Here we deposit the code associated with the article Synthetic connectivity, emergence, and self-regeneration in the network of prebiotic chemistry by Agnieszka Wołos, Rafał Roszak, Anna Żądło-Dobrowolska, Wiktor Beker, Barbara Mikulak-Klucznik, Grzegorz Spólnik, Mirosław Dygas, Sara Szymkuć & Bartosz A. Grzybowski published in Science https://science.sciencemag.org/content/369/6511/eaaw1955
Data deposited here consiststs of two parts:
Tree of life as calculated by the Allchemy software and described in the paper are stored in subdirectory data/ An examples of scripts which demonstrate how to work with deposited data are collected in subdirectory scripts/ some calculated statistics about tree-of-life graph are stored in subdirectory precalculatedGraphStats/
Molecular properites of compounds obtained from full tree-of-life are deposited in subdirectory molecule_data/