diff --git a/Cargo.lock b/Cargo.lock
index 55c4f366b0b1e..5716f1186370f 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -321,7 +321,7 @@ dependencies = [
  "bytes",
  "futures",
  "paste",
- "prost",
+ "prost 0.11.9",
  "tokio",
  "tonic",
 ]
@@ -1717,8 +1717,8 @@ version = "0.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c2895653b4d9f1538a83970077cb01dfc77a4810524e51a110944688e916b18e"
 dependencies = [
- "prost",
- "prost-types",
+ "prost 0.11.9",
+ "prost-types 0.11.9",
  "tonic",
  "tracing-core",
 ]
@@ -1735,7 +1735,7 @@ dependencies = [
  "futures",
  "hdrhistogram",
  "humantime",
- "prost-types",
+ "prost-types 0.11.9",
  "serde",
  "serde_json",
  "thread_local",
@@ -2625,7 +2625,7 @@ version = "0.11.1"
 source = "git+https://github.com/risingwavelabs/etcd-client.git?rev=d55550a#d55550a182f2119e39e64858771468e1b26f6777"
 dependencies = [
  "http",
- "prost",
+ "prost 0.11.9",
  "tokio",
  "tokio-stream",
  "tonic",
@@ -3238,8 +3238,8 @@ version = "0.11.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "5453af21ac0cc1f3b2cfb5b687c174e701c10ec2d5c286aff7ca8cbbf08d31b4"
 dependencies = [
- "prost",
- "prost-types",
+ "prost 0.11.9",
+ "prost-types 0.11.9",
  "tonic",
 ]
 
@@ -3266,7 +3266,7 @@ dependencies = [
  "google-cloud-gax",
  "google-cloud-googleapis",
  "google-cloud-token",
- "prost-types",
+ "prost-types 0.11.9",
  "thiserror",
  "tokio",
  "tokio-util",
@@ -5072,7 +5072,7 @@ dependencies = [
  "opentelemetry-semantic-conventions",
  "opentelemetry_api",
  "opentelemetry_sdk",
- "prost",
+ "prost 0.11.9",
  "thiserror",
  "tokio",
  "tonic",
@@ -5086,7 +5086,7 @@ checksum = "b1e3f814aa9f8c905d0ee4bde026afd3b2577a97c10e1699912e3e44f0c4cbeb"
 dependencies = [
  "opentelemetry_api",
  "opentelemetry_sdk",
- "prost",
+ "prost 0.11.9",
  "tonic",
 ]
 
@@ -5355,14 +5355,14 @@ dependencies = [
 
 [[package]]
 name = "pbjson-build"
-version = "0.5.1"
+version = "0.6.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bdbb7b706f2afc610f3853550cdbbf6372fd324824a087806bd4480ea4996e24"
+checksum = "2580e33f2292d34be285c5bc3dba5259542b083cfad6037b6d70345f24dcb735"
 dependencies = [
  "heck 0.4.1",
- "itertools 0.10.5",
- "prost",
- "prost-types",
+ "itertools 0.11.0",
+ "prost 0.12.1",
+ "prost-types 0.12.1",
 ]
 
 [[package]]
@@ -5874,7 +5874,17 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0b82eaa1d779e9a4bc1c3217db8ffbeabaae1dca241bf70183242128d48681cd"
 dependencies = [
  "bytes",
- "prost-derive",
+ "prost-derive 0.11.9",
+]
+
+[[package]]
+name = "prost"
+version = "0.12.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "f4fdd22f3b9c31b53c060df4a0613a1c7f062d4115a2b984dd15b1858f7e340d"
+dependencies = [
+ "bytes",
+ "prost-derive 0.12.1",
 ]
 
 [[package]]
@@ -5891,8 +5901,8 @@ dependencies = [
  "multimap",
  "petgraph",
  "prettyplease",
- "prost",
- "prost-types",
+ "prost 0.11.9",
+ "prost-types 0.11.9",
  "regex",
  "syn 1.0.109",
  "tempfile",
@@ -5912,6 +5922,19 @@ dependencies = [
  "syn 1.0.109",
 ]
 
+[[package]]
+name = "prost-derive"
+version = "0.12.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "265baba7fabd416cf5078179f7d2cbeca4ce7a9041111900675ea7c4cb8a4c32"
+dependencies = [
+ "anyhow",
+ "itertools 0.11.0",
+ "proc-macro2",
+ "quote",
+ "syn 2.0.33",
+]
+
 [[package]]
 name = "prost-helpers"
 version = "0.1.0"
@@ -5929,8 +5952,8 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "6b823de344848e011658ac981009100818b322421676740546f8b52ed5249428"
 dependencies = [
  "once_cell",
- "prost",
- "prost-types",
+ "prost 0.11.9",
+ "prost-types 0.11.9",
 ]
 
 [[package]]
@@ -5939,7 +5962,16 @@ version = "0.11.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "213622a1460818959ac1181aaeb2dc9c7f63df720db7d788b3e24eacd1983e13"
 dependencies = [
- "prost",
+ "prost 0.11.9",
+]
+
+[[package]]
+name = "prost-types"
+version = "0.12.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e081b29f63d83a4bc75cfc9f3fe424f9156cf92d8a4f0c9407cce9a1b67327cf"
+dependencies = [
+ "prost 0.12.1",
 ]
 
 [[package]]
@@ -6023,9 +6055,9 @@ dependencies = [
  "oauth2",
  "openidconnect",
  "pem 1.1.1",
- "prost",
+ "prost 0.11.9",
  "prost-build",
- "prost-derive",
+ "prost-derive 0.11.9",
  "rand",
  "regex",
  "serde",
@@ -6421,7 +6453,7 @@ dependencies = [
  "bytes",
  "itertools 0.11.0",
  "parking_lot 0.12.1",
- "prost",
+ "prost 0.11.9",
  "risingwave_common",
  "risingwave_hummock_sdk",
  "risingwave_object_store",
@@ -6629,7 +6661,7 @@ dependencies = [
  "pretty_assertions",
  "procfs 0.15.1",
  "prometheus",
- "prost",
+ "prost 0.11.9",
  "rand",
  "regex",
  "reqwest",
@@ -6838,10 +6870,10 @@ dependencies = [
  "parking_lot 0.12.1",
  "paste",
  "prometheus",
- "prost",
+ "prost 0.11.9",
  "prost-build",
  "prost-reflect",
- "prost-types",
+ "prost-types 0.11.9",
  "protobuf-native",
  "pulsar",
  "rand",
@@ -7102,7 +7134,7 @@ dependencies = [
  "madsim-tokio",
  "mockall",
  "parking_lot 0.12.1",
- "prost",
+ "prost 0.11.9",
  "risingwave_common",
  "risingwave_hummock_sdk",
  "risingwave_pb",
@@ -7114,7 +7146,7 @@ dependencies = [
 name = "risingwave_java_binding"
 version = "0.1.0"
 dependencies = [
- "prost",
+ "prost 0.11.9",
  "risingwave_common",
  "risingwave_expr",
  "risingwave_jni_core",
@@ -7132,7 +7164,7 @@ dependencies = [
  "itertools 0.11.0",
  "jni",
  "madsim-tokio",
- "prost",
+ "prost 0.11.9",
  "risingwave_common",
  "risingwave_expr",
  "risingwave_hummock_sdk",
@@ -7180,7 +7212,7 @@ dependencies = [
  "parking_lot 0.12.1",
  "prometheus",
  "prometheus-http-query",
- "prost",
+ "prost 0.11.9",
  "rand",
  "regex",
  "reqwest",
@@ -7249,7 +7281,7 @@ dependencies = [
  "madsim-tonic-build",
  "pbjson",
  "pbjson-build",
- "prost",
+ "prost 0.11.9",
  "prost-helpers",
  "serde",
  "walkdir",
@@ -7525,7 +7557,7 @@ dependencies = [
  "parking_lot 0.12.1",
  "procfs 0.15.1",
  "prometheus",
- "prost",
+ "prost 0.11.9",
  "rand",
  "risingwave_backup",
  "risingwave_common",
@@ -7588,7 +7620,7 @@ dependencies = [
  "parse-display",
  "pin-project",
  "prometheus",
- "prost",
+ "prost 0.11.9",
  "rand",
  "risingwave_common",
  "risingwave_connector",
@@ -9165,7 +9197,7 @@ dependencies = [
  "hyper-timeout",
  "percent-encoding",
  "pin-project",
- "prost",
+ "prost 0.11.9",
  "rustls-pemfile",
  "tokio",
  "tokio-rustls 0.24.1",
@@ -10002,7 +10034,7 @@ dependencies = [
  "postgres-types",
  "proc-macro2",
  "prometheus",
- "prost",
+ "prost 0.11.9",
  "rand",
  "rand_chacha",
  "rand_core",
diff --git a/src/prost/Cargo.toml b/src/prost/Cargo.toml
index dc6375662f806..d43aa8ffb3119 100644
--- a/src/prost/Cargo.toml
+++ b/src/prost/Cargo.toml
@@ -20,7 +20,7 @@ workspace-hack = { path = "../workspace-hack" }
 
 [build-dependencies]
 fs-err = "2.9"
-pbjson-build = "0.5"
+pbjson-build = "0.6"
 tonic-build = { workspace = true }
 walkdir = "2"