diff --git a/bin/windows/contrib/4.2/InterpretMSSpectrum_1.3.3.zip b/bin/windows/contrib/4.2/InterpretMSSpectrum_1.3.3.zip
index 151c9b5c..aa9863b7 100644
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diff --git a/bin/windows/contrib/4.2/PACKAGES b/bin/windows/contrib/4.2/PACKAGES
index a9421a5a..952d08f5 100644
--- a/bin/windows/contrib/4.2/PACKAGES
+++ b/bin/windows/contrib/4.2/PACKAGES
@@ -1153,7 +1153,7 @@ Suggests: knitr, rmarkdown
 License: Apache License (>= 2)
 
 Package: klaR
-Version: 1.7-2
+Version: 1.7-3
 Depends: R (>= 2.10.0), MASS
 Imports: combinat, questionr, grDevices, stats, utils, graphics
 Suggests: scatterplot3d (>= 0.3-22), som, mlbench, rpart, e1071
@@ -1973,12 +1973,12 @@ License: MIT + file LICENSE
 Archs: x64
 
 Package: recipes
-Version: 1.0.8
+Version: 1.0.9
 Depends: dplyr (>= 1.1.0), R (>= 3.6)
 Imports: cli, clock (>= 0.6.1), ellipsis, generics (>= 0.1.2), glue,
         gower, hardhat (>= 1.3.0), ipred (>= 0.9-12), lifecycle (>=
         1.0.3), lubridate (>= 1.8.0), magrittr, Matrix, purrr (>=
-        1.0.0), rlang (>= 1.0.3), stats, tibble, tidyr (>= 1.0.0),
+        1.0.0), rlang (>= 1.1.0), stats, tibble, tidyr (>= 1.0.0),
         tidyselect (>= 1.2.0), timeDate, utils, vctrs (>= 0.5.0), withr
 Suggests: covr, ddalpha, dials (>= 1.2.0), ggplot2, igraph, kernlab,
         knitr, modeldata (>= 0.1.1), parsnip (>= 0.1.7), RANN,
@@ -2410,9 +2410,9 @@ License: GPL-3
 Archs: x64
 
 Package: timeDate
-Version: 4022.108
-Depends: R (>= 3.6.0)
-Imports: graphics, utils, stats, methods
+Version: 4032.109
+Depends: R (>= 3.6.0), methods
+Imports: graphics, utils, stats
 Suggests: RUnit
 License: GPL (>= 2)
 
diff --git a/bin/windows/contrib/4.2/PACKAGES.gz b/bin/windows/contrib/4.2/PACKAGES.gz
index c73cad98..6fea0848 100644
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diff --git a/bin/windows/contrib/4.2/PACKAGES.rds b/bin/windows/contrib/4.2/PACKAGES.rds
index d74d2074..14593474 100644
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diff --git a/bin/windows/contrib/4.2/cliqueMS_1.7.1.zip b/bin/windows/contrib/4.2/cliqueMS_1.7.1.zip
index 1849c641..9908def6 100644
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diff --git a/bin/windows/contrib/4.2/klaR_1.7-2.zip b/bin/windows/contrib/4.2/klaR_1.7-2.zip
deleted file mode 100644
index ee3eb2e0..00000000
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diff --git a/bin/windows/contrib/4.2/klaR_1.7-3.zip b/bin/windows/contrib/4.2/klaR_1.7-3.zip
new file mode 100644
index 00000000..fb8dce8d
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diff --git a/bin/windows/contrib/4.2/patRoon_2.3.0.zip b/bin/windows/contrib/4.2/patRoon_2.3.0.zip
index 3f25cf75..4fd719a8 100644
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diff --git a/bin/windows/contrib/4.2/recipes_1.0.8.zip b/bin/windows/contrib/4.2/recipes_1.0.8.zip
deleted file mode 100644
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diff --git a/bin/windows/contrib/4.2/timeDate_4022.108.zip b/bin/windows/contrib/4.2/timeDate_4022.108.zip
deleted file mode 100644
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new file mode 100644
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diff --git a/bin/windows/contrib/4.3/BiocFileCache_2.10.1.zip b/bin/windows/contrib/4.3/BiocFileCache_2.10.1.zip
deleted file mode 100644
index 6b54fa31..00000000
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diff --git a/bin/windows/contrib/4.3/ComplexHeatmap_2.18.0.zip b/bin/windows/contrib/4.3/ComplexHeatmap_2.18.0.zip
deleted file mode 100644
index 394e4f6a..00000000
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diff --git a/bin/windows/contrib/4.3/GenomeInfoDb_1.38.1.zip b/bin/windows/contrib/4.3/GenomeInfoDb_1.38.2.zip
similarity index 81%
rename from bin/windows/contrib/4.3/GenomeInfoDb_1.38.1.zip
rename to bin/windows/contrib/4.3/GenomeInfoDb_1.38.2.zip
index f3f844c0..b09712ea 100644
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diff --git a/bin/windows/contrib/4.3/GetoptLong_1.0.5.zip b/bin/windows/contrib/4.3/GetoptLong_1.0.5.zip
deleted file mode 100644
index 46e38700..00000000
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diff --git a/bin/windows/contrib/4.3/HDF5Array_1.30.0.zip b/bin/windows/contrib/4.3/HDF5Array_1.30.0.zip
deleted file mode 100644
index 2f0c87d1..00000000
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diff --git a/bin/windows/contrib/4.3/InterpretMSSpectrum_1.3.3.zip b/bin/windows/contrib/4.3/InterpretMSSpectrum_1.3.3.zip
index 71adb82e..cd7cc6f2 100644
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diff --git a/bin/windows/contrib/4.3/PACKAGES b/bin/windows/contrib/4.3/PACKAGES
index 6e61fde2..eb3c1a22 100644
--- a/bin/windows/contrib/4.3/PACKAGES
+++ b/bin/windows/contrib/4.3/PACKAGES
@@ -73,14 +73,6 @@ Imports: methods, utils
 Suggests: knitr, rmarkdown, BiocStyle, tinytest
 License: Artistic-2.0
 
-Package: BiocFileCache
-Version: 2.10.1
-Depends: R (>= 3.4.0), dbplyr (>= 1.0.0)
-Imports: methods, stats, utils, dplyr, RSQLite, DBI, filelock, curl,
-        httr
-Suggests: testthat, knitr, BiocStyle, rmarkdown, rtracklayer
-License: Artistic-2.0
-
 Package: BiocGenerics
 Version: 0.48.1
 Depends: R (>= 4.0.0), methods, utils, graphics, stats
@@ -153,18 +145,6 @@ Suggests: bslib (>= 0.2.4), downlit (>= 0.4.0), htmlwidgets, jsonlite,
         (>= 3.1.0), withr (>= 2.3.0)
 License: GPL-3
 
-Package: brew
-Version: 1.0-8
-Suggests: testthat (>= 3.0.0)
-License: GPL-2
-
-Package: brio
-Version: 1.1.4
-Depends: R (>= 3.6)
-Suggests: covr, testthat (>= 3.0.0)
-License: MIT + file LICENSE
-Archs: x64
-
 Package: broom
 Version: 1.0.5
 Depends: R (>= 3.5)
@@ -391,18 +371,6 @@ Suggests: curl, testthat, xml2
 License: BSD_2_clause + file LICENSE
 Archs: x64
 
-Package: ComplexHeatmap
-Version: 2.18.0
-Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
-Imports: circlize (>= 0.4.14), GetoptLong, colorspace, clue,
-        RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges,
-        matrixStats, foreach, doParallel, codetools
-Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff,
-        fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport,
-        grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12),
-        gridGraphics, gplots, rmarkdown, Cairo, magick
-License: MIT + file LICENSE
-
 Package: conflicted
 Version: 1.2.0
 Depends: R (>= 3.2)
@@ -521,27 +489,12 @@ Imports: stats
 Enhances: robustbase
 License: GPL (>= 2)
 
-Package: desc
-Version: 1.4.3
-Depends: R (>= 3.4)
-Imports: cli, R6, utils
-Suggests: callr, covr, gh, spelling, testthat, whoami, withr
-License: MIT + file LICENSE
-
 Package: diagram
 Version: 1.6.5
 Depends: R (>= 2.01), shape
 Imports: stats, graphics
 License: GPL (>= 2)
 
-Package: diffobj
-Version: 0.3.5
-Depends: R (>= 3.1.0)
-Imports: crayon (>= 1.3.2), tools, methods, utils, stats
-Suggests: knitr, rmarkdown
-License: GPL-2 | GPL-3
-Archs: x64
-
 Package: digest
 Version: 0.6.33
 Depends: R (>= 3.3.0)
@@ -690,13 +643,6 @@ Suggests: biglm, testthat (>= 0.11.0)
 License: GPL-2 | GPL-3 | file LICENSE
 Archs: x64
 
-Package: filelock
-Version: 1.0.3
-Depends: R (>= 3.4)
-Suggests: callr (>= 2.0.0), covr, testthat (>= 3.0.0)
-License: MIT + file LICENSE
-Archs: x64
-
 Package: fingerprint
 Version: 3.5.7
 Depends: methods
@@ -843,7 +789,7 @@ Suggests: covr, pkgload, testthat (>= 3.0.0), tibble, withr
 License: MIT + file LICENSE
 
 Package: GenomeInfoDb
-Version: 1.38.1
+Version: 1.38.2
 Depends: R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>=
         0.25.12), IRanges (>= 2.13.12)
 Imports: stats, stats4, utils, RCurl, GenomeInfoDbData
@@ -881,13 +827,6 @@ Suggests: Matrix, Biobase, AnnotationDbi, annotate, Biostrings (>=
 License: Artistic-2.0
 Archs: x64
 
-Package: GetoptLong
-Version: 1.0.5
-Depends: R (>= 3.3.0)
-Imports: rjson, GlobalOptions (>= 0.1.0), methods, crayon
-Suggests: testthat (>= 1.0.0), knitr, markdown, rmarkdown
-License: MIT + file LICENSE
-
 Package: getPass
 Version: 0.2-4
 Depends: R (>= 3.0.0)
@@ -943,14 +882,6 @@ Suggests: covr, crayon, DBI, dplyr, forcats, ggplot2, knitr, magrittr,
 License: MIT + file LICENSE
 Archs: x64
 
-Package: gmm
-Version: 1.8
-Depends: R (>= 2.10.0), sandwich
-Imports: stats, methods, grDevices, graphics
-Suggests: knitr, mvtnorm, car, stabledist, MASS, timeDate, timeSeries
-License: GPL (>= 2)
-Archs: x64
-
 Package: googledrive
 Version: 2.1.1
 Depends: R (>= 3.6)
@@ -1037,19 +968,6 @@ Suggests: covr, crayon, fs, knitr, pillar (>= 1.4.0), rmarkdown,
 License: MIT + file LICENSE
 Archs: x64
 
-Package: HDF5Array
-Version: 1.30.0
-Depends: R (>= 3.4), methods, DelayedArray (>= 0.27.2), rhdf5 (>=
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-Imports: utils, stats, tools, Matrix, rhdf5filters, BiocGenerics (>=
-        0.31.5), S4Vectors, IRanges, S4Arrays (>= 1.1.1)
-LinkingTo: S4Vectors (>= 0.27.13), Rhdf5lib
-Suggests: BiocParallel, GenomicRanges, SummarizedExperiment (>=
-        1.15.1), h5vcData, ExperimentHub, TENxBrainData, zellkonverter,
-        GenomicFeatures, RUnit, SingleCellExperiment
-License: Artistic-2.0
-Archs: x64
-
 Package: heatmaply
 Version: 1.5.0
 Depends: R (>= 3.0.0), plotly (>= 4.7.1), viridis
@@ -1156,11 +1074,6 @@ Depends: R (>= 2.10)
 License: GPL-2
 Archs: x64
 
-Package: imputeLCMD
-Version: 2.1
-Depends: R (>= 2.10), tmvtnorm, norm, pcaMethods, impute
-License: GPL (>= 2)
-
 Package: InterpretMSSpectrum
 Version: 1.3.3
 Depends: R (>= 2.10.0)
@@ -1533,14 +1446,6 @@ Enhances: HDF5Array
 License: Artistic-2.0
 Archs: x64
 
-Package: msentropy
-Version: 0.1.4
-Depends: R (>= 3.5.0), Rcpp (>= 1.0.10)
-LinkingTo: Rcpp
-Suggests: testthat
-License: Apache License (== 2.0)
-Archs: x64
-
 Package: MsExperiment
 Version: 1.4.0
 Depends: R (>= 4.2), ProtGenerics (>= 1.9.1),
@@ -1611,14 +1516,6 @@ Imports: colorspace, methods
 Suggests: ggplot2, testthat
 License: MIT + file LICENSE
 
-Package: mvtnorm
-Version: 1.2-4
-Depends: R(>= 3.5.0)
-Imports: stats
-Suggests: qrng, numDeriv
-License: GPL-2
-Archs: x64
-
 Package: mzID
 Version: 1.40.0
 Depends: methods
@@ -1671,12 +1568,6 @@ Package: nontargetData
 Version: 1.1
 License: GPL-3
 
-Package: norm
-Version: 1.0-11.1
-Imports: stats
-License: GPL (>= 2)
-Archs: x64
-
 Package: numDeriv
 Version: 2016.8-1.1
 Depends: R (>= 2.11.1)
@@ -1695,12 +1586,6 @@ Version: 1.36.0
 Imports: parallel, tools, utils
 License: LGPL (>= 2.1)
 
-Package: patrick
-Version: 0.2.0
-Depends: R (>= 3.1)
-Imports: dplyr, purrr, rlang, testthat, tibble
-License: Apache License 2.0
-
 Package: patRoon
 Version: 2.3.0
 Depends: R (>= 3.5.0)
@@ -1750,29 +1635,12 @@ Suggests: bit64, DBI, debugme, DiagrammeR, dplyr, formattable, ggplot2,
         tibble, units (>= 0.7.2), vdiffr, withr
 License: MIT + file LICENSE
 
-Package: pkgbuild
-Version: 1.4.3
-Depends: R (>= 3.5)
-Imports: callr (>= 3.2.0), cli (>= 3.4.0), desc, processx, R6
-Suggests: covr, cpp11, knitr, mockery, Rcpp, rmarkdown, testthat (>=
-        3.0.0), withr (>= 2.3.0)
-License: MIT + file LICENSE
-
 Package: pkgconfig
 Version: 2.0.3
 Imports: utils
 Suggests: covr, testthat, disposables (>= 1.0.3)
 License: MIT + file LICENSE
 
-Package: pkgload
-Version: 1.3.3
-Depends: R (>= 3.4.0)
-Imports: cli (>= 3.3.0), crayon, desc, fs, glue, methods, pkgbuild,
-        rlang (>= 1.1.1), rprojroot, utils, withr (>= 2.4.3)
-Suggests: bitops, covr, mathjaxr, mockr, pak, Rcpp, remotes,
-        rstudioapi, testthat (>= 3.1.0)
-License: GPL-3
-
 Package: plogr
 Version: 0.2.0
 Suggests: Rcpp
@@ -1815,11 +1683,6 @@ Depends: R (>= 2.9.0)
 License: GPL-2 | GPL-3
 Archs: x64
 
-Package: praise
-Version: 1.0.0
-Suggests: testthat
-License: MIT + file LICENSE
-
 Package: preprocessCore
 Version: 1.64.0
 Imports: stats
@@ -2226,23 +2089,6 @@ Suggests: knitr, rmarkdown, shiny (>= 0.13), miniUI (>= 0.1.1),
         rstudioapi (>= 0.6), htmltools
 License: MIT + file LICENSE
 
-Package: rhdf5
-Version: 2.46.1
-Depends: R (>= 4.0.0), methods
-Imports: Rhdf5lib (>= 1.13.4), rhdf5filters, S4Vectors
-LinkingTo: Rhdf5lib
-Suggests: bit64, BiocStyle, knitr, rmarkdown, testthat, bench, dplyr,
-        ggplot2, mockery, BiocParallel
-License: Artistic-2.0
-Archs: x64
-
-Package: rhdf5filters
-Version: 1.14.1
-LinkingTo: Rhdf5lib
-Suggests: BiocStyle, knitr, rmarkdown, tinytest, rhdf5 (>= 2.34.0)
-License: BSD_2_clause + file LICENSE
-Archs: x64
-
 Package: Rhdf5lib
 Version: 1.24.1
 Depends: R (>= 4.2.0)
@@ -2256,12 +2102,6 @@ Depends: R (>= 3.6.0), methods
 License: LGPL-2.1
 Archs: x64
 
-Package: rjson
-Version: 0.2.21
-Depends: R (>= 4.0.0)
-License: GPL-2
-Archs: x64
-
 Package: rlang
 Version: 1.1.2
 Depends: R (>= 3.5.0)
@@ -2319,19 +2159,6 @@ Suggests: BiocGenerics, BiocStyle, knitr, multtest, omicade4,
         rmarkdown, testthat
 License: CeCILL
 
-Package: roxygen2
-Version: 7.2.3
-Depends: R (>= 3.3)
-Imports: brew, cli (>= 3.3.0), commonmark, desc (>= 1.2.0), knitr,
-        methods, pkgload (>= 1.0.2), purrr (>= 0.3.3), R6 (>= 2.1.2),
-        rlang (>= 1.0.6), stringi, stringr (>= 1.0.0), utils, withr,
-        xml2
-LinkingTo: cpp11
-Suggests: covr, R.methodsS3, R.oo, rmarkdown (>= 2.16), testthat (>=
-        3.1.2), yaml
-License: MIT + file LICENSE
-Archs: x64
-
 Package: rpart
 Version: 4.1.23
 Priority: recommended
@@ -2347,13 +2174,6 @@ Suggests: covr, knitr, lifecycle, mockr, rlang, rmarkdown, testthat (>=
         3.0.0), withr
 License: MIT + file LICENSE
 
-Package: rpx
-Version: 2.10.0
-Depends: R (>= 3.5.0), methods
-Imports: BiocFileCache, jsonlite, xml2, RCurl, curl, utils
-Suggests: Biostrings, BiocStyle, testthat, knitr, tibble, rmarkdown
-License: GPL-2
-
 Package: rsm
 Version: 2.10.4
 Imports: estimability
@@ -2406,15 +2226,6 @@ Suggests: IRanges, GenomicRanges, SummarizedExperiment, Matrix,
 License: Artistic-2.0
 Archs: x64
 
-Package: sandwich
-Version: 3.1-0
-Depends: R (>= 3.0.0)
-Imports: stats, utils, zoo
-Suggests: AER, car, geepack, lattice, lme4, lmtest, MASS, multiwayvcov,
-        parallel, pcse, plm, pscl, scatterplot3d, stats4, strucchange,
-        survival
-License: GPL-2 | GPL-3
-
 Package: sass
 Version: 0.4.8
 Imports: fs (>= 1.2.4), rlang (>= 0.4.10), htmltools (>= 0.5.1), R6,
@@ -2469,12 +2280,6 @@ Suggests: datasets, Cairo (>= 1.5-5), testthat (>= 3.0.0), knitr (>=
         magrittr, yaml, future, dygraphs, ragg, showtext, sass
 License: GPL-3 | file LICENSE
 
-Package: shinydashboard
-Version: 0.7.2
-Depends: R (>= 3.0)
-Imports: utils, shiny (>= 1.0.0), htmltools (>= 0.2.6), promises
-License: GPL (>= 2) | file LICENSE
-
 Package: shinyjs
 Version: 2.1.0
 Depends: R (>= 3.1.0)
@@ -2483,15 +2288,6 @@ Suggests: htmltools (>= 0.2.9), knitr (>= 1.7), rmarkdown, shinyAce,
         shinydisconnect, testthat (>= 0.9.1)
 License: MIT + file LICENSE
 
-Package: SingleCellExperiment
-Version: 1.24.0
-Depends: SummarizedExperiment
-Imports: methods, utils, stats, S4Vectors, BiocGenerics, GenomicRanges,
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-Suggests: testthat, BiocStyle, knitr, rmarkdown, Matrix, scRNAseq (>=
-        2.9.1), Rtsne
-License: GPL-3
-
 Package: slam
 Version: 0.1-50
 Depends: R (>= 3.4.0)
@@ -2635,20 +2431,6 @@ Suggests: covr, knitr, rmarkdown, testthat (>= 2.1.0), tools
 License: MIT + file LICENSE
 Archs: x64
 
-Package: testthat
-Version: 3.2.1
-Depends: R (>= 3.6.0)
-Imports: brio (>= 1.1.3), callr (>= 3.7.3), cli (>= 3.6.1), desc (>=
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-        pkgload (>= 1.3.2.1), praise (>= 1.0.0), processx (>= 3.8.2),
-        ps (>= 1.7.5), R6 (>= 2.5.1), rlang (>= 1.1.1), utils, waldo
-        (>= 0.5.1), withr (>= 2.5.0)
-Suggests: covr, curl (>= 0.9.5), diffviewer (>= 0.1.0), knitr,
-        rmarkdown, rstudioapi, shiny, usethis, vctrs (>= 0.1.0), xml2
-License: MIT + file LICENSE
-Archs: x64
-
 Package: textshaping
 Version: 0.3.7
 Depends: R (>= 3.2.0)
@@ -2721,9 +2503,9 @@ License: GPL-3
 Archs: x64
 
 Package: timeDate
-Version: 4022.108
-Depends: R (>= 3.6.0)
-Imports: graphics, utils, stats, methods
+Version: 4032.109
+Depends: R (>= 3.6.0), methods
+Imports: graphics, utils, stats
 Suggests: RUnit
 License: GPL (>= 2)
 
@@ -2733,14 +2515,6 @@ Imports: xfun (>= 0.29)
 Suggests: testit, rstudioapi
 License: MIT + file LICENSE
 
-Package: tmvtnorm
-Version: 1.6
-Depends: R (>= 1.9.0), mvtnorm, utils, Matrix, stats4, gmm
-Imports: stats, methods
-Suggests: lattice
-License: GPL (>= 2)
-Archs: x64
-
 Package: TSP
 Version: 1.2-4
 Depends: R (>= 3.5.0)
@@ -2749,14 +2523,6 @@ Suggests: maps, doParallel, testthat
 License: GPL-3
 Archs: x64
 
-Package: tweedie
-Version: 2.3.5
-Depends: R (>= 2.8.0)
-Imports: methods
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-License: GPL (>= 2)
-Archs: x64
-
 Package: tzdb
 Version: 0.4.0
 Depends: R (>= 3.5.0)
@@ -2798,16 +2564,6 @@ Suggests: bit64, covr, crayon, dplyr (>= 0.8.5), generics, knitr,
 License: MIT + file LICENSE
 Archs: x64
 
-Package: vdiffr
-Version: 1.0.7
-Depends: R (>= 3.2.0)
-Imports: diffobj, glue, grDevices, htmltools, lifecycle, rlang,
-        testthat (>= 3.0.3), xml2 (>= 1.0.0)
-LinkingTo: cpp11
-Suggests: covr, ggplot2 (>= 3.2.0), roxygen2, withr
-License: MIT + file LICENSE
-Archs: x64
-
 Package: vegan
 Version: 2.6-4
 Depends: permute (>= 0.9-0), lattice, R (>= 3.4.0)
@@ -2871,14 +2627,6 @@ Suggests: affydata, hgu95av2cdf, BiocStyle, knitr, rmarkdown, dplyr,
 License: Artistic-2.0
 Archs: x64
 
-Package: waldo
-Version: 0.5.2
-Depends: R (>= 3.6)
-Imports: cli, diffobj (>= 0.3.4), fansi, glue, methods, rematch2, rlang
-        (>= 1.0.0), tibble
-Suggests: covr, R6, testthat (>= 3.0.0), withr, xml2
-License: MIT + file LICENSE
-
 Package: webchem
 Version: 1.3.0
 Depends: R (>= 3.0)
@@ -2984,12 +2732,3 @@ Version: 1.48.0
 Suggests: BiocStyle
 License: Artistic-2.0 + file LICENSE
 Archs: x64
-
-Package: zoo
-Version: 1.8-12
-Depends: R (>= 3.1.0), stats
-Imports: utils, graphics, grDevices, lattice (>= 0.20-27)
-Suggests: AER, coda, chron, ggplot2 (>= 3.0.0), mondate, scales,
-        stinepack, strucchange, timeDate, timeSeries, tis, tseries, xts
-License: GPL-2 | GPL-3
-Archs: x64
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index 80561ca3..26d6f3fe 100644
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index 8320d0f0..00000000
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diff --git a/bin/windows/contrib/4.3/testthat_3.2.1.zip b/bin/windows/contrib/4.3/testthat_3.2.1.zip
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index 00000000..33ce2e5b
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index 8d580031..00000000
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diff --git a/bin/windows/contrib/4.3/tweedie_2.3.5.zip b/bin/windows/contrib/4.3/tweedie_2.3.5.zip
deleted file mode 100644
index 2dee8dec..00000000
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diff --git a/bin/windows/contrib/4.3/vdiffr_1.0.7.zip b/bin/windows/contrib/4.3/vdiffr_1.0.7.zip
deleted file mode 100644
index 2efdbf0e..00000000
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diff --git a/bin/windows/contrib/4.3/waldo_0.5.2.zip b/bin/windows/contrib/4.3/waldo_0.5.2.zip
deleted file mode 100644
index f15c7f0c..00000000
Binary files a/bin/windows/contrib/4.3/waldo_0.5.2.zip and /dev/null differ
diff --git a/bin/windows/contrib/4.3/zoo_1.8-12.zip b/bin/windows/contrib/4.3/zoo_1.8-12.zip
deleted file mode 100644
index f27fb509..00000000
Binary files a/bin/windows/contrib/4.3/zoo_1.8-12.zip and /dev/null differ
diff --git a/patRoonDeps-4.2.tsv b/patRoonDeps-4.2.tsv
index 0424a138..e177f332 100644
--- a/patRoonDeps-4.2.tsv
+++ b/patRoonDeps-4.2.tsv
@@ -138,7 +138,7 @@ kableExtra	1.3.4
 kernlab	0.9-32	
 KernSmooth	2.23-22	
 keys	0.1.1	
-klaR	1.7-2	
+klaR	1.7-3	
 knitr	1.45	
 KPIC	2.4.0	dd0dddb0cac9bc7882eb1a420c82c9713a8aa0ce
 labeling	0.4.3	
@@ -186,7 +186,7 @@ nontargetData	1.1	75b2a92cd549f72cc71dfe7b86bd42947d62f2c4
 numDeriv	2016.8-1.1	
 openssl	2.1.1	
 parallelly	1.36.0	
-patRoon	2.3.0	80d3175c10387b1d1f9fc83a9e3c69b78b90fbe3
+patRoon	2.3.0	53ea5e848c94917befc269d0994b63234376d8cb
 pcaMethods	1.90.0	
 permute	0.9-7	
 pillar	1.9.0	
@@ -239,7 +239,7 @@ reactR	0.5.0
 readMzXmlData	2.8.3	
 readr	2.1.4	
 readxl	1.4.3	
-recipes	1.0.8	
+recipes	1.0.9	
 registry	0.5-1	
 rematch	2.0.0	
 rematch2	2.1.2	
@@ -289,7 +289,7 @@ tidyr	1.3.0
 tidyselect	1.2.0	
 tidyverse	2.0.0	
 timechange	0.2.0	
-timeDate	4022.108	
+timeDate	4032.109	
 tinytex	0.49	
 TSP	1.2-4	
 tzdb	0.4.0	
diff --git a/patRoonDeps-4.3.tsv b/patRoonDeps-4.3.tsv
index 75e9420f..39bd94b6 100644
--- a/patRoonDeps-4.3.tsv
+++ b/patRoonDeps-4.3.tsv
@@ -10,7 +10,6 @@ base64enc	0.1-3
 BH	1.81.0-1	
 Biobase	2.62.0	
 BiocBaseUtils	1.4.0	
-BiocFileCache	2.10.1	
 BiocGenerics	0.48.1	
 BiocManager	1.30.22	
 BiocParallel	1.36.0	
@@ -20,8 +19,6 @@ bit64	4.0.5
 bitops	1.0-7	
 blob	1.2.4	
 bookdown	0.37	
-brew	1.0-8	
-brio	1.1.4	
 broom	1.0.5	
 bslib	0.6.1	
 ca	0.71.1	
@@ -47,7 +44,6 @@ codetools	0.2-19
 colorspace	2.1-0	
 combinat	0.0-8	
 commonmark	1.9.0	
-ComplexHeatmap	2.18.0	
 conflicted	1.2.0	
 cpp11	0.4.7	
 crayon	1.5.2	
@@ -61,9 +57,7 @@ dbscan	1.1-12
 DelayedArray	0.28.0	
 dendextend	1.17.1	
 DEoptimR	1.1-3	
-desc	1.4.3	
 diagram	1.6.5	
-diffobj	0.3.5	
 digest	0.6.33	
 docopt	0.7.1	
 doParallel	1.0.17	
@@ -84,7 +78,6 @@ fastAdaboost	1.0.0	f331ff8ccfe2e7f318448a29bc72af646dfaf2c1
 fastcluster	1.2.3	
 fastmap	1.1.1	
 ff	4.0.9	
-filelock	1.0.3	
 fingerprint	3.5.7	
 flexdashboard	0.6.2	
 fontawesome	0.5.2	
@@ -104,17 +97,15 @@ GA	3.2.3
 gargle	1.5.2	
 gclus	1.3.2	
 generics	0.1.3	
-GenomeInfoDb	1.38.1	
+GenomeInfoDb	1.38.2	
 GenomeInfoDbData	1.2.11	f3111730888a3d83e9465ffa2552003de153bbf2
 GenomicRanges	1.54.1	
-GetoptLong	1.0.5	
 getPass	0.2-4	
 ggplot2	3.4.4	
 ggrepel	0.9.4	
 GlobalOptions	0.1.2	
 globals	0.16.2	
 glue	1.6.2	
-gmm	1.8	
 googledrive	2.1.1	
 googlesheets4	1.1.1	
 gower	1.0.1	
@@ -125,7 +116,6 @@ gtable	0.3.4
 gtools	3.9.5	
 hardhat	1.3.0	
 haven	2.5.4	
-HDF5Array	1.30.0	
 heatmaply	1.5.0	
 highr	0.10	
 Hmisc	5.1-1	
@@ -138,7 +128,6 @@ httr	1.4.7
 ids	1.0.1	
 igraph	1.6.0	
 impute	1.76.0	
-imputeLCMD	2.1	
 InterpretMSSpectrum	1.3.3	0731d92accdf5db2a6d7b03c24b2d324b67b1c72
 ipred	0.9-14	
 IRanges	2.36.0	
@@ -185,7 +174,6 @@ modelr	0.1.11
 MS2Quant	1.1.0	46e0c77ef4961a29a73a388105eeb28e33839630
 MS2Tox	0.3.2	7e5574291c834b1ab9e50f8adf74a703188f6a6f
 MsCoreUtils	1.14.1	
-msentropy	0.1.4	
 MsExperiment	1.4.0	
 MsFeatures	1.10.0	
 MSnbase	2.28.1	
@@ -193,7 +181,6 @@ MultiAssayExperiment	1.28.0
 MultiDataSet	1.30.0	
 multtest	2.58.0	
 munsell	0.5.0	
-mvtnorm	1.2-4	
 mzID	1.40.0	
 mzR	2.36.0	
 ncdf4	1.22	
@@ -201,24 +188,19 @@ nlme	3.1-164
 nnet	7.3-19	
 nontarget	2.2	e30221585182bc66e1f8e1113b2c1103a0f2cb56
 nontargetData	1.1	75b2a92cd549f72cc71dfe7b86bd42947d62f2c4
-norm	1.0-11.1	
 numDeriv	2016.8-1.1	
 openssl	2.1.1	
 parallelly	1.36.0	
-patrick	0.2.0	
-patRoon	2.3.0	80d3175c10387b1d1f9fc83a9e3c69b78b90fbe3
+patRoon	2.3.0	53ea5e848c94917befc269d0994b63234376d8cb
 pcaMethods	1.94.0	
 permute	0.9-7	
 pillar	1.9.0	
-pkgbuild	1.4.3	
 pkgconfig	2.0.3	
-pkgload	1.3.3	
 plogr	0.2.0	
 plotly	4.10.3	
 plotrix	3.8-4	
 plyr	1.8.9	
 png	0.1-8	
-praise	1.0.0	
 preprocessCore	1.64.0	
 prettyunits	1.2.0	
 pROC	1.18.5	
@@ -271,37 +253,29 @@ reprex	2.0.2
 reshape2	1.4.4	
 Rgraphviz	2.46.0	
 rhandsontable	0.3.8	
-rhdf5	2.46.1	
-rhdf5filters	1.14.1	
 Rhdf5lib	1.24.1	
 rJava	1.0-10	
-rjson	0.2.21	
 rlang	1.1.2	
 rlist	0.4.6.2	
 rmarkdown	2.25	
 robustbase	0.99-1	
 ROCR	1.0-11	
 ropls	1.34.0	
-roxygen2	7.2.3	
 rpart	4.1.23	
 rprojroot	2.0.4	
-rpx	2.10.0	
 rsm	2.10.4	
 RSQLite	2.3.4	
 rstudioapi	0.15.0	
 rvest	1.0.3	
 S4Arrays	1.2.0	
 S4Vectors	0.40.2	
-sandwich	3.1-0	
 sass	0.4.8	
 scales	1.3.0	
 selectr	0.4-2	
 seriation	1.5.4	
 shape	1.4.6	
 shiny	1.8.0	
-shinydashboard	0.7.2	
 shinyjs	2.1.0	
-SingleCellExperiment	1.24.0	
 slam	0.1-50	
 snow	0.4-4	
 sourcetools	0.1.7-1	
@@ -319,24 +293,20 @@ survival	3.5-7
 svglite	2.1.3	
 sys	3.4.2	
 systemfonts	1.0.5	
-testthat	3.2.1	
 textshaping	0.3.7	
 tibble	3.2.1	
 tidyr	1.3.0	
 tidyselect	1.2.0	
 tidyverse	2.0.0	
 timechange	0.2.0	
-timeDate	4022.108	
+timeDate	4032.109	
 tinytex	0.49	
-tmvtnorm	1.6	
 TSP	1.2-4	
-tweedie	2.3.5	
 tzdb	0.4.0	
 UpSetR	1.4.0	
 utf8	1.2.4	
 uuid	1.1-1	
 vctrs	0.6.5	
-vdiffr	1.0.7	
 vegan	2.6-4	
 VennDiagram	1.7.3	
 viridis	0.6.4	
@@ -344,7 +314,6 @@ viridisLite	0.4.2
 visNetwork	2.1.2	
 vroom	1.6.5	
 vsn	3.70.0	
-waldo	0.5.2	
 webchem	1.3.0	
 webshot	0.5.5	
 withr	2.5.2	
@@ -357,4 +326,3 @@ xtable	1.8-4
 XVector	0.42.0	
 yaml	2.3.8	
 zlibbioc	1.48.0	
-zoo	1.8-12