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ProForma: A Standard Proteoform Notation #9

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lgatto opened this issue Aug 16, 2019 · 1 comment
Open

ProForma: A Standard Proteoform Notation #9

lgatto opened this issue Aug 16, 2019 · 1 comment

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lgatto commented Aug 16, 2019

Possibly of interest: ProForma: A Standard Proteoform Notation.
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lgatto commented Aug 16, 2019

Note in particular table 1, listing modification databases:

database name CTDP recommendation URL
Unimod default http://www.unimod.org/modifications_list.php
UniProt recommended https://www.uniprot.org/docs/ptmlist
RESID recommended http://pir.georgetown.edu/resid/resid.shtml
PSI-MOD recommended http://www.ebi.ac.uk/ols/ontologies/mod
UniCarbKB acceptable http://www.unicarbkb.org/
PRO Ontology/NCBI acceptable http://pir.georgetown.edu/pro/

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