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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
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<title>Software Carpentry: Intermediate R for reproducible scientific analysis</title>
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<body class="lesson">
<div class="container card">
<div class="banner">
<a href="http://software-carpentry.org" title="Software Carpentry">
<img alt="Software Carpentry banner" src="img/software-carpentry-banner.png" />
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</div>
<article>
<div class="row">
<div class="col-md-10 col-md-offset-1">
<h1 class="title">Intermediate R for reproducible scientific analysis</h1>
<p>Intermediate lessons for researchers already familiar with R, but not programming concepts.</p>
<p>The goal of this lesson is to teach researchers already experienced with R some useful programming concepts that will make writing code more efficient, modular, and reusable, as well as packages for efficient data analysis.</p>
<p>A variety of third party packages are used throughout this workshop. These are not necessarily the best, nor are they comprehensive, but they are packages we find useful.</p>
<p>Note that this workshop will not cover statistics.</p>
<section class="prereq panel panel-warning">
<div class="panel-heading">
<h2 id="prerequisites"><span class="glyphicon glyphicon-education"></span>Prerequisites</h2>
</div>
<div class="panel-body">
<p>Be familar with RStudio, project creation, and variables, and the basic data structures and types in R.</p>
</div>
</section>
<h2 id="prequisite-topics">Prequisite topics</h2>
<p>The following topics are taught in the <a href="http://swcarpentry.github.io/r-novice-gapminder">novice lessons</a> and are expected knowledge for this workshop:</p>
<ol style="list-style-type: decimal">
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/01-rstudio-intro/">Introduction to R and RStudio</a></li>
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/02-project-intro/">Project Management</a></li>
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/03-seeking-help/">Seeking help</a></li>
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/04-data-structures-part1/">Data structures</a></li>
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/05-data-structures-part2/">Exploring Data Frames</a></li>
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/06-data-subsetting/">Subsetting data</a></li>
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/09-vectorization/">Vectorisation</a></li>
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/11-writing-data/">Writing data</a></li>
</ol>
<h2 id="topics">Topics</h2>
<h3 id="session-1-4-hours">Session 1 (~ 4 hours)</h3>
<ol style="list-style-type: decimal">
<li><a href="14-data-table.html">Data.table</a></li>
<li><a href="15-reshape2.html">Reshaping data</a></li>
<li><a href="16-for.html">For loops</a></li>
<li><a href="17-apply.html">Apply functions</a></li>
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/07-control-flow/">Control flow</a></li>
</ol>
<h3 id="session-2-3-hours">Session 2 (~ 3 hours)</h3>
<ol start="6" style="list-style-type: decimal">
<li><a href="18-rmd.html">R markdown</a></li>
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/12-plyr/">plyr</a></li>
<li><a href="19-foreach.html">Parallel for loops</a></li>
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/10-functions/">Functions</a></li>
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/16-wrap-up/">Wrapping up</a></li>
</ol>
<h2 id="optional-lessons">Optional lessons</h2>
<ol start="8" style="list-style-type: decimal">
<li><a href="http://swcarpentry.github.io/r-novice-gapminder/08-plot-ggplot2/">ggplot2</a></li>
</ol>
<h2 id="other-resources">Other Resources</h2>
<ul>
<li><a href="reference.html">Reference</a></li>
<li><a href="instructors.html">Instructor’s Guide</a></li>
</ul>
</div>
</div>
</article>
<div class="footer">
<a class="label swc-blue-bg" href="http://software-carpentry.org">Software Carpentry</a>
<a class="label swc-blue-bg" href="https://github.com/swcarpentry/lesson-template">Source</a>
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<a class="label swc-blue-bg" href="LICENSE.html">License</a>
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