Artifact-free fat-water separation in Dixon MRI using deep learning

To use, clone the repository, install the environment and run the following commands

cd fat_water_separation
python perform_fat_water_separation.py fat_water_separation_model.pth ip_path op_path

It will save the estimated fat and water channels to nifti files that can be used for analyses.

If you use this in your research please cite the below:

Basty N, Thanaj M, Cule M, Sorokin EP, Liu Y, Thomas EL, Bell JD, Whitcher B. Artifact-free fat-water separation in Dixon MRI using deep learning. Journal of Big Data 10, 4 (2023). DOI: 10.1186/s40537-022-00677-1