diff --git a/draft.md b/draft.md index 71d7f9db..e1f7bd9a 100644 --- a/draft.md +++ b/draft.md @@ -8,8 +8,7 @@ image: https://rweekly.org/public/facebook.png + [How to have (my) content shared by R Weekly?](https://github.com/rweekly/rweekly.org#how-to-have-my-content-shared-by-r-weekly) -This week’s release was curated by [](), with help from the R Weekly team members and contributors. - +This week’s release was curated by [Batool Almarzouq](https://batool-almarzouq.netlify.app/), with help from the R Weekly team members and contributors. ### Highlight @@ -22,7 +21,7 @@ This week’s release was curated by [](), with help from the R Weekly team memb ### R in the Real World - ++ [Shiny Gatherings x Pharmaverse: Building Clinical Data Analysis Apps with {teal} ](https://www.appsilon.com/post/building-clinical-data-analysis-apps-with-teal) + [SpendDash: a free online dashboard that allows you to keep track of your spending habits over time](https://rpubs.com/mkranj/SP) @@ -32,12 +31,17 @@ This week’s release was curated by [](), with help from the R Weekly team memb ### R in Academia ++ [Comparison of spatial patterns in categorical raster data for overlapping regions using R](https://jakubnowosad.com/posts/2024-11-03-spatcomp-bp4/) ### Resources + [Talk recordings and workshop materials from posit::conf(2024)](https://posit.co/blog/talks-and-workshops-from-posit-conf-2024/) ++ [10 New Books added to Big Book of R + R community on BlueSky](https://oscarbaruffa.com/bbor_20241029/) + ++ [Ordinal State Transition Models as a Unifying Risk Prediction Framework](https://fharrell.com/talk/icsa/) + ### New Packages @@ -46,8 +50,55 @@ This week’s release was curated by [](), with help from the R Weekly team memb **CRAN** ++ [Rcpp 1.0.13-1 on CRAN: Hot Fix](http://dirk.eddelbuettel.com/blog/2024/11/02#rcpp_1.0.13-1) ++ [gcbd 0.2.7 on CRAN: More Mere Maintenance](http://dirk.eddelbuettel.com/blog/2024/10/29#gcbd_0.2.7) + ++ [Tapyr 0.2 Update: Package Management with uv and Shiny for Python Testing API](https://www.appsilon.com/post/tapyr-0-2-release) + + [{favawesome} 0.1.1](https://favawesome.shinyworks.org/): Use Font Awesome Icons as Shiny favicons ++ [{trtswitch} 0.1.1](https://cran.r-project.org/package=trtswitch): Treatment Switching ++ [{surveydown} 0.4.0](https://cran.r-project.org/package=surveydown): Markdown-Based Surveys Using 'Quarto' and 'shiny' ++ [{StabilityApp} 0.1.0](https://cran.r-project.org/package=StabilityApp): Stability Analysis App for GEI in Multi-Environment Trials ++ [{srppp} 1.0.1](https://cran.r-project.org/package=srppp): Read the Swiss Register of Plant Protection Products ++ [{SensIAT} 0.1.0](https://cran.r-project.org/package=SensIAT): Sensitivity Analysis for Irregular Assessment Times ++ [{rcollectadhd} 0.8](https://cran.r-project.org/package=rcollectadhd): Collection of Data Sets Containing ADHD Related Data ++ [{poth} 0.2-0](https://cran.r-project.org/package=poth): Precision of Treatment Hierarchy (POTH) ++ [{OPSR} 0.1.2](https://cran.r-project.org/package=OPSR): Ordinal Probit Switching Regression ++ [{legendry} 0.1.0](https://cran.r-project.org/package=legendry): Extended Legends and Axes for 'ggplot2' ++ [{gofIG} 1.0](https://cran.r-project.org/package=gofIG): Goodness-of-Fit Tests for the Inverse Gaussian Distribution ++ [{favawesome} 0.1.1](https://cran.r-project.org/package=favawesome): 'Font Awesome' Icons as 'shiny' 'favicons' ++ [{CADF} 0.1](https://cran.r-project.org/package=CADF): Customer Analytics Data Formatting ++ [{vchartr} 0.1.3](https://cran.r-project.org/package=vchartr): Interactive Charts with the 'JavaScript' 'VChart' Library ++ [{SudokuDesigns} 1.0.0](https://cran.r-project.org/package=SudokuDesigns): Sudoku as an Experimental Design ++ [{mapindiatools} 1.0.1](https://cran.r-project.org/package=mapindiatools): Mapping Data for 'mapindia' Package ++ [{Largevars} 1.0.2](https://cran.r-project.org/package=Largevars): Testing Large VARs for the Presence of Cointegration ++ [{ip2locationio} 1.0.0](https://cran.r-project.org/package=ip2locationio): Lookup Geolocation and Proxy Information using 'IP2Location.io' +API ++ [{dsTidyverseClient} 1.0.0](https://cran.r-project.org/package=dsTidyverseClient): 'DataSHIELD' 'Tidyverse' Clientside Package ++ [{dawaR} 0.2.3](https://cran.r-project.org/package=dawaR): An API Wrapper for 'DAWA' - 'The Danish Address Web API' ++ [{BSTZINB} 1.0.1](https://cran.r-project.org/package=BSTZINB): Association Among Disease Counts and Socio-Environmental Factors ++ [{PublicWorksFinanceIT} 0.3.0](https://cran.r-project.org/package=PublicWorksFinanceIT): Soil Defense Investments in Italy: Data Retrieval, Analysis, +Visualization ++ [{redatamx} 1.0.0](https://cran.r-project.org/package=redatamx): R Interface to 'Redatam' Library ++ [{mxcc} 0.0.1](https://cran.r-project.org/package=mxcc): Maxwell Control Charts ++ [{TMTI} 1.0.3](https://cran.r-project.org/package=TMTI): Too Many, Too Improbable (TMTI) Test Procedures ++ [{dhis2r} 0.2.0](https://cran.r-project.org/package=dhis2r): Client for the 'DHIS2' Web API ++ [{tapLock} 0.2.0](https://cran.r-project.org/package=tapLock): Seamless Single Sign-on for 'shiny' ++ [{ShinyWizard} 1.1.3.11](https://cran.r-project.org/package=ShinyWizard): An Interactive Wizard to Design, Build, and Deploy R Packages +Demo Presentation ++ [{ProTrackR2} 0.0.4](https://cran.r-project.org/package=ProTrackR2): Manipulate and Play 'ProTracker' Modules ++ [{primarycensored} 1.0.0](https://cran.r-project.org/package=primarycensored): Primary Event Censored Distributions ++ [{picohdr} 0.1.1](https://cran.r-project.org/package=picohdr): Read, Write and Manipulate High Dynamic Range Images ++ [{monad} 0.1.1](https://cran.r-project.org/package=monad): Operators and Generics for Monads ++ [{icmstate} 0.1.0](https://cran.r-project.org/package=icmstate): Interval Censored Multi-State Models ++ [{ggpca} 0.1.2](https://cran.r-project.org/package=ggpca): Publication-Ready PCA, t-SNE, and UMAP Plots ++ [{fastdid} 1.0.2](https://cran.r-project.org/package=fastdid): Fast Staggered Difference-in-Difference Estimators ++ [{eyetools} 0.7.2](https://cran.r-project.org/package=eyetools): Analyse Eye Data ++ [{enderecobr} 0.2.0](https://cran.r-project.org/package=enderecobr): Padronizador de Endereços Brasileiros (Brazilian Addresses +Standardizer) ++ [{classicaltest} 0.7.0](https://cran.r-project.org/package=classicaltest): Classical Test Theory (CTT) Analysis ++ [{bfpwr} 0.1.3](https://cran.r-project.org/package=bfpwr): Power and Sample Size Calculations for Bayes Factor Analysis **Bioconductor** @@ -60,6 +111,224 @@ This week’s release was curated by [](), with help from the R Weekly team memb 🔍 [Search on R-universe](https://r-universe.dev/search/) 🔍 ++ [{NeuralEstimators} 0.1.1](https://cran.r-project.org/package=NeuralEstimators): Likelihood-Free Parameter Estimation using Neural Networks - [diffify](https://diffify.com/R/NeuralEstimators) ++ [{DSI} 1.7.1](https://cran.r-project.org/package=DSI): 'DataSHIELD' Interface - [diffify](https://diffify.com/R/DSI) ++ [{kyotil} 2024.11-01](https://cran.r-project.org/package=kyotil): Utility Functions for Statistical Analysis Report Generation and +Monte Carlo Studies - [diffify](https://diffify.com/R/kyotil) ++ [{enmSdmX} 1.1.9](https://cran.r-project.org/package=enmSdmX): Species Distribution Modeling and Ecological Niche Modeling - [diffify](https://diffify.com/R/enmSdmX) ++ [{ogrdbstats} 0.5.2](https://cran.r-project.org/package=ogrdbstats): Analysis of Adaptive Immune Receptor Repertoire Germ Line +Statistics - [diffify](https://diffify.com/R/ogrdbstats) ++ [{spatstat.utils} 3.1-1](https://cran.r-project.org/package=spatstat.utils): Utility Functions for 'spatstat' - [diffify](https://diffify.com/R/spatstat.utils) ++ [{robmed} 1.1.0](https://cran.r-project.org/package=robmed): (Robust) Mediation Analysis - [diffify](https://diffify.com/R/robmed) ++ [{RLoptimal} 1.1.0](https://cran.r-project.org/package=RLoptimal): Optimal Adaptive Allocation Using Deep Reinforcement Learning - [diffify](https://diffify.com/R/RLoptimal) ++ [{reformulas} 0.4.0](https://cran.r-project.org/package=reformulas): Machinery for Processing Random Effect Formulas - [diffify](https://diffify.com/R/reformulas) ++ [{MazamaSpatialUtils} 0.8.7](https://cran.r-project.org/package=MazamaSpatialUtils): Spatial Data Download and Utility Functions - [diffify](https://diffify.com/R/MazamaSpatialUtils) ++ [{ggeasy} 0.1.5](https://cran.r-project.org/package=ggeasy): Easy Access to 'ggplot2' Commands - [diffify](https://diffify.com/R/ggeasy) ++ [{daltoolbox} 1.0.787](https://cran.r-project.org/package=daltoolbox): Leveraging Experiment Lines to Data Analytics - [diffify](https://diffify.com/R/daltoolbox) ++ [{crew} 0.10.1](https://cran.r-project.org/package=crew): A Distributed Worker Launcher Framework - [diffify](https://diffify.com/R/crew) ++ [{collapse} 2.0.17](https://cran.r-project.org/package=collapse): Advanced and Fast Data Transformation - [diffify](https://diffify.com/R/collapse) ++ [{PvSTATEM} 0.1.1](https://cran.r-project.org/package=PvSTATEM): Reading, Quality Control and Preprocessing of MBA (Multiplex +Bead Assay) Data - [diffify](https://diffify.com/R/PvSTATEM) ++ [{Rcpp} 1.0.13-1](https://cran.r-project.org/package=Rcpp): Seamless R and C++ Integration - [diffify](https://diffify.com/R/Rcpp) ++ [{EIEntropy} 0.0.1.2](https://cran.r-project.org/package=EIEntropy): Ecological Inference Applying Entropy - [diffify](https://diffify.com/R/EIEntropy) ++ [{multinet} 4.2.1](https://cran.r-project.org/package=multinet): Analysis and mining of multilayer social networks - [diffify](https://diffify.com/R/multinet) ++ [{LadderFuelsR} 0.0.7](https://cran.r-project.org/package=LadderFuelsR): Automated Tool for Vertical Fuel Continuity Analysis using +Airborne Laser Scanning Data - [diffify](https://diffify.com/R/LadderFuelsR) ++ [{semhelpinghands} 0.1.12](https://cran.r-project.org/package=semhelpinghands): Helper Functions for Structural Equation Modeling - [diffify](https://diffify.com/R/semhelpinghands) ++ [{dataCompare} 1.0.1](https://cran.r-project.org/package=dataCompare): A 'shiny' App to Compare Two Data Frames - [diffify](https://diffify.com/R/dataCompare) ++ [{NMsim} 0.1.4](https://cran.r-project.org/package=NMsim): Seamless 'Nonmem' Simulation Platform - [diffify](https://diffify.com/R/NMsim) ++ [{wxgenR} 1.4.2](https://cran.r-project.org/package=wxgenR): A Stochastic Weather Generator with Seasonality - [diffify](https://diffify.com/R/wxgenR) ++ [{PakPC2023} 0.2.0](https://cran.r-project.org/package=PakPC2023): Pakistan Population Census 2023 - [diffify](https://diffify.com/R/PakPC2023) ++ [{RaceID} 0.3.7](https://cran.r-project.org/package=RaceID): Identification of Cell Types, Inference of Lineage Trees, and +Prediction of Noise Dynamics from Single-Cell RNA-Seq Data - [diffify](https://diffify.com/R/RaceID) ++ [{iccmult} 1.0.1](https://cran.r-project.org/package=iccmult): Intracluster Correlation Coefficient (ICC) in Clustered +Categorical Data - [diffify](https://diffify.com/R/iccmult) ++ [{landscapeR} 1.3](https://cran.r-project.org/package=landscapeR): Categorical Landscape Simulation Facility - [diffify](https://diffify.com/R/landscapeR) ++ [{iimi} 1.2.1](https://cran.r-project.org/package=iimi): Identifying Infection with Machine Intelligence - [diffify](https://diffify.com/R/iimi) ++ [{rSRD} 0.1.8](https://cran.r-project.org/package=rSRD): Sum of Ranking Differences Statistical Test - [diffify](https://diffify.com/R/rSRD) ++ [{gdm} 1.6.0-3](https://cran.r-project.org/package=gdm): Generalized Dissimilarity Modeling - [diffify](https://diffify.com/R/gdm) ++ [{ReliaGrowR} 0.1.1](https://cran.r-project.org/package=ReliaGrowR): Reliability Growth Analysis - [diffify](https://diffify.com/R/ReliaGrowR) ++ [{R.oo} 1.27.0](https://cran.r-project.org/package=R.oo): R Object-Oriented Programming with or without References - [diffify](https://diffify.com/R/R.oo) ++ [{CDGHMM} 0.1.1](https://cran.r-project.org/package=CDGHMM): Hidden Markov Models for Multivariate Panel Data - [diffify](https://diffify.com/R/CDGHMM) ++ [{PxWebApiData} 1.0.0](https://cran.r-project.org/package=PxWebApiData): PX-Web Data by API - [diffify](https://diffify.com/R/PxWebApiData) ++ [{tinytex} 0.54](https://cran.r-project.org/package=tinytex): Helper Functions to Install and Maintain TeX Live, and Compile +LaTeX Documents - [diffify](https://diffify.com/R/tinytex) ++ [{AlphaSimR} 1.6.1](https://cran.r-project.org/package=AlphaSimR): Breeding Program Simulations - [diffify](https://diffify.com/R/AlphaSimR) ++ [{basemaps} 0.0.8](https://cran.r-project.org/package=basemaps): Accessing Spatial Basemaps in R - [diffify](https://diffify.com/R/basemaps) ++ [{mapgl} 0.1.4](https://cran.r-project.org/package=mapgl): Interactive Maps with 'Mapbox GL JS' and 'MapLibre GL JS' - [diffify](https://diffify.com/R/mapgl) ++ [{priorsense} 1.0.4](https://cran.r-project.org/package=priorsense): Prior Diagnostics and Sensitivity Analysis - [diffify](https://diffify.com/R/priorsense) ++ [{gitignore} 0.1.8](https://cran.r-project.org/package=gitignore): Create Useful .gitignore Files for your Project - [diffify](https://diffify.com/R/gitignore) ++ [{CICI} 0.9.3](https://cran.r-project.org/package=CICI): Causal Inference with Continuous (Multiple Time Point) +Interventions - [diffify](https://diffify.com/R/CICI) ++ [{crosstable} 0.8.1](https://cran.r-project.org/package=crosstable): Crosstables for Descriptive Analyses - [diffify](https://diffify.com/R/crosstable) ++ [{blockCV} 3.1-5](https://cran.r-project.org/package=blockCV): Spatial and Environmental Blocking for K-Fold and LOO +Cross-Validation - [diffify](https://diffify.com/R/blockCV) ++ [{NetworkReg} 2.0](https://cran.r-project.org/package=NetworkReg): Generalized Linear Regression Models on Network-Linked Data with +Statistical Inference - [diffify](https://diffify.com/R/NetworkReg) ++ [{ggstatsplot} 0.12.5](https://cran.r-project.org/package=ggstatsplot): 'ggplot2' Based Plots with Statistical Details - [diffify](https://diffify.com/R/ggstatsplot) ++ [{slca} 1.2.0](https://cran.r-project.org/package=slca): Structural Modeling for Multiple Latent Class Variables - [diffify](https://diffify.com/R/slca) ++ [{cpfa} 1.1-6](https://cran.r-project.org/package=cpfa): Classification with Parallel Factor Analysis - [diffify](https://diffify.com/R/cpfa) ++ [{ASMap} 1.0-8](https://cran.r-project.org/package=ASMap): Linkage Map Construction using the MSTmap Algorithm - [diffify](https://diffify.com/R/ASMap) ++ [{GLMMcosinor} 0.2.1](https://cran.r-project.org/package=GLMMcosinor): Fit a Cosinor Model Using a Generalized Mixed Modeling Framework - [diffify](https://diffify.com/R/GLMMcosinor) ++ [{ieegio} 0.0.2](https://cran.r-project.org/package=ieegio): File IO for Intracranial Electroencephalography - [diffify](https://diffify.com/R/ieegio) ++ [{autometric} 0.1.1](https://cran.r-project.org/package=autometric): Background Resource Logging - [diffify](https://diffify.com/R/autometric) ++ [{scicomptools} 1.1.0](https://cran.r-project.org/package=scicomptools): Tools Developed by the NCEAS Scientific Computing Support Team - [diffify](https://diffify.com/R/scicomptools) ++ [{Quartet} 1.2.7](https://cran.r-project.org/package=Quartet): Comparison of Phylogenetic Trees Using Quartet and Split +Measures - [diffify](https://diffify.com/R/Quartet) ++ [{IncidencePrevalence} 0.8.1](https://cran.r-project.org/package=IncidencePrevalence): Estimate Incidence and Prevalence using the OMOP Common Data +Model - [diffify](https://diffify.com/R/IncidencePrevalence) ++ [{BSTZINB} 1.0.1](https://cran.r-project.org/package=BSTZINB): Association Among Disease Counts and Socio-Environmental Factors - [diffify](https://diffify.com/R/BSTZINB) ++ [{scoringutils} 2.0.0](https://cran.r-project.org/package=scoringutils): Utilities for Scoring and Assessing Predictions - [diffify](https://diffify.com/R/scoringutils) ++ [{predictoR} 4.1.1](https://cran.r-project.org/package=predictoR): Predictive Data Analysis System - [diffify](https://diffify.com/R/predictoR) ++ [{ympes} 1.6.0](https://cran.r-project.org/package=ympes): Collection of Helper Functions - [diffify](https://diffify.com/R/ympes) ++ [{xfun} 0.49](https://cran.r-project.org/package=xfun): Supporting Functions for Packages Maintained by 'Yihui Xie' - [diffify](https://diffify.com/R/xfun) ++ [{optbin} 1.4](https://cran.r-project.org/package=optbin): Optimal Binning of Data - [diffify](https://diffify.com/R/optbin) ++ [{mlflow} 2.17.2](https://cran.r-project.org/package=mlflow): Interface to 'MLflow' - [diffify](https://diffify.com/R/mlflow) ++ [{flexlsx} 0.3.0](https://cran.r-project.org/package=flexlsx): Exporting 'flextable' to 'xlsx' Files - [diffify](https://diffify.com/R/flexlsx) ++ [{EDCimport} 0.5.1](https://cran.r-project.org/package=EDCimport): Import Data from EDC Software - [diffify](https://diffify.com/R/EDCimport) ++ [{wintime} 0.3.0](https://cran.r-project.org/package=wintime): Win Time Methods for Time-to-Event Data in Clinical Trials - [diffify](https://diffify.com/R/wintime) ++ [{tsDyn} 11.0.5.2](https://cran.r-project.org/package=tsDyn): Nonlinear Time Series Models with Regime Switching - [diffify](https://diffify.com/R/tsDyn) ++ [{inlamemi} 1.1.0](https://cran.r-project.org/package=inlamemi): Missing Data and Measurement Error Modelling in INLA - [diffify](https://diffify.com/R/inlamemi) ++ [{iForecast} 1.0.9](https://cran.r-project.org/package=iForecast): Machine Learning Time Series Forecasting - [diffify](https://diffify.com/R/iForecast) ++ [{icr} 0.6.6](https://cran.r-project.org/package=icr): Compute Krippendorff's Alpha - [diffify](https://diffify.com/R/icr) ++ [{FinNet} 0.2.1](https://cran.r-project.org/package=FinNet): Quickly Build and Manipulate Financial Networks - [diffify](https://diffify.com/R/FinNet) ++ [{BayesMultiMode} 0.7.3](https://cran.r-project.org/package=BayesMultiMode): Bayesian Mode Inference - [diffify](https://diffify.com/R/BayesMultiMode) ++ [{EpiNow2} 1.6.1](https://cran.r-project.org/package=EpiNow2): Estimate Real-Time Case Counts and Time-Varying Epidemiological +Parameters - [diffify](https://diffify.com/R/EpiNow2) ++ [{dunlin} 0.1.8](https://cran.r-project.org/package=dunlin): Preprocessing Tools for Clinical Trial Data - [diffify](https://diffify.com/R/dunlin) ++ [{DisaggregateTS} 3.0.1](https://cran.r-project.org/package=DisaggregateTS): High-Dimensional Temporal Disaggregation - [diffify](https://diffify.com/R/DisaggregateTS) ++ [{meta} 8.0-1](https://cran.r-project.org/package=meta): General Package for Meta-Analysis - [diffify](https://diffify.com/R/meta) ++ [{vdiffr} 1.0.8](https://cran.r-project.org/package=vdiffr): Visual Regression Testing and Graphical Diffing - [diffify](https://diffify.com/R/vdiffr) ++ [{TropFishR} 1.6.5](https://cran.r-project.org/package=TropFishR): Tropical Fisheries Analysis - [diffify](https://diffify.com/R/TropFishR) ++ [{SpatialDDLS} 1.0.3](https://cran.r-project.org/package=SpatialDDLS): Deconvolution of Spatial Transcriptomics Data Based on Neural +Networks - [diffify](https://diffify.com/R/SpatialDDLS) ++ [{NMdata} 0.1.8](https://cran.r-project.org/package=NMdata): Preparation, Checking and Post-Processing Data for PK/PD +Modeling - [diffify](https://diffify.com/R/NMdata) ++ [{miniPCH} 0.4.0](https://cran.r-project.org/package=miniPCH): Survival Distributions with Piece-Wise Constant Hazards - [diffify](https://diffify.com/R/miniPCH) ++ [{greenfeedr} 1.0.1](https://cran.r-project.org/package=greenfeedr): Process and Report 'GreenFeed' Data - [diffify](https://diffify.com/R/greenfeedr) ++ [{lingtypology} 1.1.20](https://cran.r-project.org/package=lingtypology): Linguistic Typology and Mapping - [diffify](https://diffify.com/R/lingtypology) ++ [{LDATree} 0.2.0](https://cran.r-project.org/package=LDATree): Oblique Classification Trees with Uncorrelated Linear +Discriminant Analysis Splits - [diffify](https://diffify.com/R/LDATree) ++ [{dataRetrieval} 2.7.17](https://cran.r-project.org/package=dataRetrieval): Retrieval Functions for USGS and EPA Hydrology and Water Quality +Data - [diffify](https://diffify.com/R/dataRetrieval) ++ [{ggsector} 1.7.0](https://cran.r-project.org/package=ggsector): Draw Sectors - [diffify](https://diffify.com/R/ggsector) ++ [{file2meco} 0.9.0](https://cran.r-project.org/package=file2meco): Transform Files to 'microtable' Object with 'microeco' Package - [diffify](https://diffify.com/R/file2meco) ++ [{survML} 1.2.0](https://cran.r-project.org/package=survML): Tools for Flexible Survival Analysis Using Machine Learning - [diffify](https://diffify.com/R/survML) ++ [{statsExpressions} 1.6.1](https://cran.r-project.org/package=statsExpressions): Tidy Dataframes and Expressions with Statistical Details - [diffify](https://diffify.com/R/statsExpressions) ++ [{smacpod} 2.6.4](https://cran.r-project.org/package=smacpod): Statistical Methods for the Analysis of Case-Control Point Data - [diffify](https://diffify.com/R/smacpod) ++ [{MSCquartets} 3.0](https://cran.r-project.org/package=MSCquartets): Analyzing Gene Tree Quartets under the Multi-Species Coalescent - [diffify](https://diffify.com/R/MSCquartets) ++ [{ColOpenData} 0.3.1](https://cran.r-project.org/package=ColOpenData): Download Colombian Demographic, Climate and Geospatial Data - [diffify](https://diffify.com/R/ColOpenData) ++ [{samc} 4.0.0](https://cran.r-project.org/package=samc): Spatial Absorbing Markov Chains - [diffify](https://diffify.com/R/samc) ++ [{Rpolyhedra} 0.5.5](https://cran.r-project.org/package=Rpolyhedra): Polyhedra Database - [diffify](https://diffify.com/R/Rpolyhedra) ++ [{micromap} 1.9.10](https://cran.r-project.org/package=micromap): Linked Micromap Plots - [diffify](https://diffify.com/R/micromap) ++ [{rangeBuilder} 2.2](https://cran.r-project.org/package=rangeBuilder): Occurrence Filtering, Geographic Standardization and Generation +of Species Range Polygons - [diffify](https://diffify.com/R/rangeBuilder) ++ [{COMMA} 1.1.0](https://cran.r-project.org/package=COMMA): Correcting Misclassified Mediation Analysis - [diffify](https://diffify.com/R/COMMA) ++ [{smof} 1.2.1](https://cran.r-project.org/package=smof): Scoring Methodology for Ordered Factors - [diffify](https://diffify.com/R/smof) ++ [{proffer} 0.2.1](https://cran.r-project.org/package=proffer): Profile R Code and Visualize with 'Pprof' - [diffify](https://diffify.com/R/proffer) ++ [{MSTest} 0.1.3](https://cran.r-project.org/package=MSTest): Hypothesis Testing for Markov Switching Models - [diffify](https://diffify.com/R/MSTest) ++ [{cureplots} 1.1.1](https://cran.r-project.org/package=cureplots): CURE (Cumulative Residual) Plots - [diffify](https://diffify.com/R/cureplots) ++ [{mappeR} 1.3.0](https://cran.r-project.org/package=mappeR): Construct and Visualize TDA Mapper Graphs - [diffify](https://diffify.com/R/mappeR) ++ [{pbdSLAP} 0.3-6](https://cran.r-project.org/package=pbdSLAP): Programming with Big Data -- Scalable Linear Algebra Packages - [diffify](https://diffify.com/R/pbdSLAP) ++ [{bWGR} 2.2.11](https://cran.r-project.org/package=bWGR): Bayesian Whole-Genome Regression - [diffify](https://diffify.com/R/bWGR) ++ [{COMBO} 1.2.0](https://cran.r-project.org/package=COMBO): Correcting Misclassified Binary Outcomes in Association Studies - [diffify](https://diffify.com/R/COMBO) ++ [{DescToolsAddIns} 1.12](https://cran.r-project.org/package=DescToolsAddIns): Interactive Functions to be Used as Shortcuts in 'RStudio' - [diffify](https://diffify.com/R/DescToolsAddIns) ++ [{GD} 10.6](https://cran.r-project.org/package=GD): Geographical Detectors for Assessing Spatial Factors - [diffify](https://diffify.com/R/GD) ++ [{compareGroups} 4.9.1](https://cran.r-project.org/package=compareGroups): Descriptive Analysis by Groups - [diffify](https://diffify.com/R/compareGroups) ++ [{survminer} 0.5.0](https://cran.r-project.org/package=survminer): Drawing Survival Curves using 'ggplot2' - [diffify](https://diffify.com/R/survminer) ++ [{FKF.SP} 0.3.3](https://cran.r-project.org/package=FKF.SP): Fast Kalman Filtering Through Sequential Processing - [diffify](https://diffify.com/R/FKF.SP) ++ [{PEPBVS} 2.0](https://cran.r-project.org/package=PEPBVS): Bayesian Variable Selection using Power-Expected-Posterior Prior - [diffify](https://diffify.com/R/PEPBVS) ++ [{MM4LMM} 3.0.3](https://cran.r-project.org/package=MM4LMM): Inference of Linear Mixed Models Through MM Algorithm - [diffify](https://diffify.com/R/MM4LMM) ++ [{rtoot} 0.3.5](https://cran.r-project.org/package=rtoot): Collecting and Analyzing Mastodon Data - [diffify](https://diffify.com/R/rtoot) ++ [{ggtangle} 0.0.4](https://cran.r-project.org/package=ggtangle): Draw Network with Data - [diffify](https://diffify.com/R/ggtangle) ++ [{duckdb} 1.1.2](https://cran.r-project.org/package=duckdb): DBI Package for the DuckDB Database Management System - [diffify](https://diffify.com/R/duckdb) ++ [{softclassval} 1.1.0](https://cran.r-project.org/package=softclassval): Soft Classification Performance Measures - [diffify](https://diffify.com/R/softclassval) ++ [{fuzzySim} 4.26](https://cran.r-project.org/package=fuzzySim): Fuzzy Similarity in Species Distributions - [diffify](https://diffify.com/R/fuzzySim) ++ [{FuzzyImputationTest} 0.3.4](https://cran.r-project.org/package=FuzzyImputationTest): Imputation Procedures and Quality Tests for Fuzzy Data - [diffify](https://diffify.com/R/FuzzyImputationTest) ++ [{fs} 1.6.5](https://cran.r-project.org/package=fs): Cross-Platform File System Operations Based on 'libuv' - [diffify](https://diffify.com/R/fs) ++ [{rxode2} 3.0.2](https://cran.r-project.org/package=rxode2): Facilities for Simulating from ODE-Based Models - [diffify](https://diffify.com/R/rxode2) ++ [{rice} 0.4.0](https://cran.r-project.org/package=rice): Radiocarbon Equations - [diffify](https://diffify.com/R/rice) ++ [{refseqR} 1.1.5](https://cran.r-project.org/package=refseqR): Common Computational Operations Working with RefSeq Entries +(GenBank) - [diffify](https://diffify.com/R/refseqR) ++ [{modEvA} 3.20](https://cran.r-project.org/package=modEvA): Model Evaluation and Analysis - [diffify](https://diffify.com/R/modEvA) ++ [{elhmc} 1.2.1](https://cran.r-project.org/package=elhmc): Sampling from a Empirical Likelihood Bayesian Posterior of +Parameters Using Hamiltonian Monte Carlo - [diffify](https://diffify.com/R/elhmc) ++ [{rliger} 2.1.0](https://cran.r-project.org/package=rliger): Linked Inference of Genomic Experimental Relationships - [diffify](https://diffify.com/R/rliger) ++ [{gcbd} 0.2.7](https://cran.r-project.org/package=gcbd): 'GPU'/CPU Benchmarking in Debian-Based Systems - [diffify](https://diffify.com/R/gcbd) ++ [{dexisensitivity} 1.0.1](https://cran.r-project.org/package=dexisensitivity): 'DEXi' Decision Tree Analysis and Visualization - [diffify](https://diffify.com/R/dexisensitivity) ++ [{bravo} 3.2.2](https://cran.r-project.org/package=bravo): Bayesian Screening and Variable Selection - [diffify](https://diffify.com/R/bravo) ++ [{bio3d} 2.4-5](https://cran.r-project.org/package=bio3d): Biological Structure Analysis - [diffify](https://diffify.com/R/bio3d) ++ [{folda} 0.2.0](https://cran.r-project.org/package=folda): Forward Stepwise Discriminant Analysis with Pillai's Trace - [diffify](https://diffify.com/R/folda) ++ [{manynet} 1.3.1](https://cran.r-project.org/package=manynet): Many Ways to Make, Modify, Map, Mark, and Measure Myriad +Networks - [diffify](https://diffify.com/R/manynet) ++ [{ordinalForest} 2.4-4](https://cran.r-project.org/package=ordinalForest): Ordinal Forests: Prediction and Variable Ranking with Ordinal +Target Variables - [diffify](https://diffify.com/R/ordinalForest) ++ [{nlmixr2extra} 3.0.1](https://cran.r-project.org/package=nlmixr2extra): Nonlinear Mixed Effects Models in Population PK/PD, Extra +Support Functions - [diffify](https://diffify.com/R/nlmixr2extra) ++ [{rqPen} 4.1.2](https://cran.r-project.org/package=rqPen): Penalized Quantile Regression - [diffify](https://diffify.com/R/rqPen) ++ [{ggseqplot} 0.8.5](https://cran.r-project.org/package=ggseqplot): Render Sequence Plots using 'ggplot2' - [diffify](https://diffify.com/R/ggseqplot) ++ [{MCARtest} 1.2.2](https://cran.r-project.org/package=MCARtest): Optimal Nonparametric Testing of Missing Completely at Random - [diffify](https://diffify.com/R/MCARtest) ++ [{rstpm2} 1.6.6](https://cran.r-project.org/package=rstpm2): Smooth Survival Models, Including Generalized Survival Models - [diffify](https://diffify.com/R/rstpm2) ++ [{reactable.extras} 0.2.1](https://cran.r-project.org/package=reactable.extras): Extra Features for 'reactable' Package - [diffify](https://diffify.com/R/reactable.extras) ++ [{RcmdrPlugin.DoE} 0.12-6](https://cran.r-project.org/package=RcmdrPlugin.DoE): R Commander Plugin for (Industrial) Design of Experiments - [diffify](https://diffify.com/R/RcmdrPlugin.DoE) ++ [{microeco} 1.10.0](https://cran.r-project.org/package=microeco): Microbial Community Ecology Data Analysis - [diffify](https://diffify.com/R/microeco) ++ [{biostat3} 0.2.2](https://cran.r-project.org/package=biostat3): Utility Functions, Datasets and Extended Examples for Survival +Analysis - [diffify](https://diffify.com/R/biostat3) ++ [{xplorerr} 0.2.0](https://cran.r-project.org/package=xplorerr): Tools for Interactive Data Exploration - [diffify](https://diffify.com/R/xplorerr) ++ [{rspm} 0.6.1](https://cran.r-project.org/package=rspm): 'RStudio' Package Manager - [diffify](https://diffify.com/R/rspm) ++ [{QuadratiK} 1.1.2](https://cran.r-project.org/package=QuadratiK): Collection of Methods Constructed using Kernel-Based Quadratic +Distances - [diffify](https://diffify.com/R/QuadratiK) ++ [{TDApplied} 3.0.4](https://cran.r-project.org/package=TDApplied): Machine Learning and Inference for Topological Data Analysis - [diffify](https://diffify.com/R/TDApplied) ++ [{sfaR} 1.0.1](https://cran.r-project.org/package=sfaR): Stochastic Frontier Analysis Routines - [diffify](https://diffify.com/R/sfaR) ++ [{rminer} 1.4.8](https://cran.r-project.org/package=rminer): Data Mining Classification and Regression Methods - [diffify](https://diffify.com/R/rminer) ++ [{gtfsrouter} 0.1.3](https://cran.r-project.org/package=gtfsrouter): Routing with 'GTFS' (General Transit Feed Specification) Data - [diffify](https://diffify.com/R/gtfsrouter) ++ [{ECG} 0.5.2](https://cran.r-project.org/package=ECG): Center of Gravity Methods - [diffify](https://diffify.com/R/ECG) ++ [{Directional} 6.9](https://cran.r-project.org/package=Directional): A Collection of Functions for Directional Data Analysis - [diffify](https://diffify.com/R/Directional) ++ [{statgenMPP} 1.0.3](https://cran.r-project.org/package=statgenMPP): QTL Mapping for Multi Parent Populations - [diffify](https://diffify.com/R/statgenMPP) ++ [{TLIC} 0.3](https://cran.r-project.org/package=TLIC): The LIC for T Distribution Regression Analysis - [diffify](https://diffify.com/R/TLIC) ++ [{progressr} 0.15.0](https://cran.r-project.org/package=progressr): An Inclusive, Unifying API for Progress Updates - [diffify](https://diffify.com/R/progressr) ++ [{dapper} 1.0.1](https://cran.r-project.org/package=dapper): Data Augmentation for Private Posterior Estimation - [diffify](https://diffify.com/R/dapper) ++ [{SVDNF} 0.1.11](https://cran.r-project.org/package=SVDNF): Discrete Nonlinear Filtering for Stochastic Volatility Models - [diffify](https://diffify.com/R/SVDNF) ++ [{nixtlar} 0.6.2](https://cran.r-project.org/package=nixtlar): A Software Development Kit for 'Nixtla''s 'TimeGPT' - [diffify](https://diffify.com/R/nixtlar) ++ [{ps} 1.8.1](https://cran.r-project.org/package=ps): List, Query, Manipulate System Processes - [diffify](https://diffify.com/R/ps) ++ [{nlmixr2} 3.0.1](https://cran.r-project.org/package=nlmixr2): Nonlinear Mixed Effects Models in Population PK/PD - [diffify](https://diffify.com/R/nlmixr2) ++ [{MomTrunc} 6.1](https://cran.r-project.org/package=MomTrunc): Moments of Folded and Doubly Truncated Multivariate +Distributions - [diffify](https://diffify.com/R/MomTrunc) ++ [{pingr} 2.0.4](https://cran.r-project.org/package=pingr): Check if a Remote Computer is Up - [diffify](https://diffify.com/R/pingr) ++ [{numberize} 1.0.1](https://cran.r-project.org/package=numberize): Convert Words to Numbers in Multiple Languages - [diffify](https://diffify.com/R/numberize) ++ [{gge} 1.9](https://cran.r-project.org/package=gge): Genotype Plus Genotype-by-Environment Biplots - [diffify](https://diffify.com/R/gge) ++ [{fastcmprsk} 1.24.10](https://cran.r-project.org/package=fastcmprsk): Fine-Gray Regression via Forward-Backward Scan - [diffify](https://diffify.com/R/fastcmprsk) ++ [{XDNUTS} 1.5](https://cran.r-project.org/package=XDNUTS): Discontinuous Hamiltonian Monte Carlo with Varying Trajectory +Length - [diffify](https://diffify.com/R/XDNUTS) ++ [{SNPassoc} 2.1-2](https://cran.r-project.org/package=SNPassoc): SNPs-Based Whole Genome Association Studies - [diffify](https://diffify.com/R/SNPassoc) ++ [{Rdiagnosislist} 1.3](https://cran.r-project.org/package=Rdiagnosislist): Manipulate SNOMED CT Diagnosis Lists - [diffify](https://diffify.com/R/Rdiagnosislist) ++ [{pdp} 0.8.2](https://cran.r-project.org/package=pdp): Partial Dependence Plots - [diffify](https://diffify.com/R/pdp) ++ [{diceplot} 0.1.2](https://cran.r-project.org/package=diceplot): High Dimensional Categorical Data Visualization - [diffify](https://diffify.com/R/diceplot) ++ [{rsconnect} 1.3.2](https://cran.r-project.org/package=rsconnect): Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io', +and 'RPubs' - [diffify](https://diffify.com/R/rsconnect) ++ [{quaxnat} 1.0.1](https://cran.r-project.org/package=quaxnat): Estimation of Natural Regeneration Potential - [diffify](https://diffify.com/R/quaxnat) ++ [{pkgbuild} 1.4.5](https://cran.r-project.org/package=pkgbuild): Find Tools Needed to Build R Packages - [diffify](https://diffify.com/R/pkgbuild) ++ [{MRG} 0.3.1](https://cran.r-project.org/package=MRG): Create Non-Confidential Multi-Resolution Grids - [diffify](https://diffify.com/R/MRG) ++ [{emoji} 16.0.0](https://cran.r-project.org/package=emoji): Data and Function to Work with Emojis - [diffify](https://diffify.com/R/emoji) ++ [{combat.enigma} 1.1.1](https://cran.r-project.org/package=combat.enigma): Fit and Apply ComBat, LMM, or Prescaling Harmonization for +ENIGMA and Other Multisite MRI Data - [diffify](https://diffify.com/R/combat.enigma) ++ [{stochvol} 3.2.5](https://cran.r-project.org/package=stochvol): Efficient Bayesian Inference for Stochastic Volatility (SV) +Models - [diffify](https://diffify.com/R/stochvol) ++ [{AdverseEvents} 0.0.2](https://cran.r-project.org/package=AdverseEvents): 'shiny' Application for Adverse Event Analysis of 'OnCore' Data - [diffify](https://diffify.com/R/AdverseEvents) ++ [{withr} 3.0.2](https://cran.r-project.org/package=withr): Run Code 'With' Temporarily Modified Global State - [diffify](https://diffify.com/R/withr) ++ [{occCite} 0.5.9](https://cran.r-project.org/package=occCite): Querying and Managing Large Biodiversity Occurrence Datasets - [diffify](https://diffify.com/R/occCite) ++ [{standby} 0.2.0](https://cran.r-project.org/package=standby): Alerts, Notifications and Loading Screen in 'Shiny' - [diffify](https://diffify.com/R/standby) ++ [{link2GI} 0.6-2](https://cran.r-project.org/package=link2GI): Linking Geographic Information Systems, Remote Sensing and Other +Command Line Tools - [diffify](https://diffify.com/R/link2GI) ++ [{rgl} 1.3.12](https://cran.r-project.org/package=rgl): 3D Visualization Using OpenGL - [diffify](https://diffify.com/R/rgl) ++ [{liver} 1.17](https://cran.r-project.org/package=liver): "Eating the Liver of Data Science" - [diffify](https://diffify.com/R/liver) ++ [{EL} 1.3](https://cran.r-project.org/package=EL): Two-Sample Empirical Likelihood - [diffify](https://diffify.com/R/EL) ++ [{HIMA} 2.3.0](https://cran.r-project.org/package=HIMA): High-Dimensional Mediation Analysis - [diffify](https://diffify.com/R/HIMA) ++ [{Hmisc} 5.2-0](https://cran.r-project.org/package=Hmisc): Harrell Miscellaneous - [diffify](https://diffify.com/R/Hmisc) ++ [{crrstep} 2024.1.1](https://cran.r-project.org/package=crrstep): Stepwise Covariate Selection for the Fine & Gray Competing Risks +Regression Model - [diffify](https://diffify.com/R/crrstep) ++ [{circumplex} 1.0.0](https://cran.r-project.org/package=circumplex): Analysis and Visualization of Circular Data - [diffify](https://diffify.com/R/circumplex) + ### Videos and Podcasts + [Listen to the R-Weekly Highlights Podcast](https://serve.podhome.fm/r-weekly-highlights) @@ -79,6 +348,20 @@ This week’s release was curated by [](), with help from the R Weekly team memb ### Tutorials ++ [Vetiver: Monitoring Models in Production](https://www.jumpingrivers.com/blog/vetiver-monitoring-mlops-deployment/) + ++ [Predictive scenarios simulation in R, Python and Excel using Techtonique API](https://thierrymoudiki.github.io/blog/2024/11/03/python/r/techtonique/scenario-simulations-techtonique) ++ [Delimiting the modelling background for scattered uneven occurrence data](https://modtools.wordpress.com/2024/10/31/delimiting-the-modelling-background-for-scattered-uneven-occurrence-data/) ++ [Street names: Day 2 of 30DayMapChallenge. Trying to find the genders in Lyon street names](https://r.iresmi.net/posts/2024/street_names/) ++ [Lidar: Day 1 of 30DayMapChallenge. Playing with points](https://r.iresmi.net/posts/2024/lidar/) + ++ [Parameterized plots and reports with R and Quarto](https://nrennie.rbind.io/blog/parameterized-plots-reports-r-quarto/) ++ [How to Use ‘OR’ Operator in R: A Comprehensive Guide for Beginners](https://www.spsanderson.com/steveondata/posts/2024-10-31/) ++ [The Ultimate Guide to Creating Lists in R: From Basics to Advanced Examples](https://www.spsanderson.com/steveondata/posts/2024-10-29/) ++ [How to Iterate Over Rows of Data Frame in R: A Complete Guide for Beginners](https://www.spsanderson.com/steveondata/posts/2024-10-28/) ++ [Reading in multiple files without loops](https://drmowinckels.io/blog/2024/lapply-files/) ++ [3MW (Automate Anything With R & GitHub Actions)](https://3mw.albert-rapp.de/p/automate-anything-with-r-github-actions) ++ [Connecting R to Postgres: From Database Creation to Data Manipulation and Charts](https://www.appsilon.com/post/connecting-r-to-postgres) @@ -90,7 +373,7 @@ Updates from [R Core](http://developer.r-project.org/blosxom.cgi/R-devel/NEWS): Updates from the [R Contribution Working Group (RCWG)](https://contributor.r-project.org/working-group): - Announcing [R Dev Day @ LatinR 2024](https://latinr.org/en/cronograma/r-dev-day/rdevday-en.html): online, Monday 18 and Tuesday 19 November, 5:30pm - 8pm (UTC-3). Join us to work on contributions to the code, documentation and translations in base R. Free and open registration, deadline **Saturday 16 Nov**. - ![Participants sitting around a desk with their laptops at an R Dev Day, turning to smile at the camera. The group appears to be predominantly women of multiple nationalities and one of the group may be recognised as the well-known R developer, Hadley Wickham.](https://raw.githubusercontent.com/rweekly/image/master/2024/W45/PXL_20240712_115920989_600.jpg) +![Participants sitting around a desk with their laptops at an R Dev Day, turning to smile at the camera. The group appears to be predominantly women of multiple nationalities and one of the group may be recognised as the well-known R developer, Hadley Wickham.](https://raw.githubusercontent.com/rweekly/image/master/2024/W45/PXL_20240712_115920989_600.jpg) ### Call for Participation