diff --git a/README.md b/README.md index f3895de4..f84eef86 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ Ligand-binding site prediction based on machine learning. [![Build Status](https://github.com/rdk/p2rank/actions/workflows/develop.yml/badge.svg)](https://github.com/rdk/p2rank/actions) [![License: MIT](http://img.shields.io/badge/license-MIT-blue.svg?style=flat)](/LICENSE.txt) ![GitHub all releases](https://img.shields.io/github/downloads/rdk/p2rank/total) - + ### Description @@ -59,12 +59,12 @@ Presentation slides introducing the original version of the algorithm: [Slides ( ### Publications -If you use P2Rank, please cite relevant papers: +If you use P2Rank, please cite relevant papers: * [Software article](https://doi.org/10.1186/s13321-018-0285-8) about P2Rank pocket prediction tool - Krivak R, Hoksza D. ***P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure.*** Journal of Cheminformatics. 2018 Aug. + Krivak R, Hoksza D. ***P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure.*** Journal of Cheminformatics. 2018 Aug. * [A new web-server article](https://doi.org/10.1093/nar/gkac389) about updates in the web interface [prankweb.cz](https://prankweb.cz) - Jakubec D, Skoda P, Krivak R, Novotny M, Hoksza D. ***PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures.*** Nucleic Acids Research, Volume 50, Issue W1, 5 July 2022, Pages W593–W597 + Jakubec D, Skoda P, Krivak R, Novotny M, Hoksza D. ***PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures.*** Nucleic Acids Research, Volume 50, Issue W1, 5 July 2022, Pages W593–W597 * [Web-server article](https://doi.org/10.1093/nar/gkz424) introducing the web interface at [prankweb.cz](https://prankweb.cz) Jendele L, Krivak R, Skoda P, Novotny M, Hoksza D. ***PrankWeb: a web server for ligand binding site prediction and visualization.*** Nucleic Acids Research, Volume 47, Issue W1, 02 July 2019, Pages W345-W349 * [Conference paper](https://doi.org/10.1007/978-3-319-21233-3_4) introducing P2Rank prediction algorithm @@ -73,6 +73,7 @@ If you use P2Rank, please cite relevant papers: Krivak R, Hoksza D. ***Improving protein-ligand binding site prediction accuracy by classification of inner pocket points using local features.*** Journal of Cheminformatics. 2015 Dec. + 👨‍💻 Usage Examples --------------