Scripts and results associated with "RNA-dependent structures of the RNA-binding loop in the flavivirus NS3 helicase".
Crystal_structure_alignments/ Holds aligned pdb files of all flavivirus NS3h structures. Aligned to 2JLV_chainA.
Multiple_Sequence_Alignments/ Holds fasta files and clstr files associated with the multiple sequence alignment performed with \textit{Flaviviridae} NS3 structures.
Essential_Dynamics/ Holds data files associated with the essential dynamics analysis of the Lb3b4 conformations observed in the ZIKV apo NS3h unbiased MD simulation.