Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Read mulltiple sequences from a single Fasta file into an assembly #30

Open
RagnarGrootKoerkamp opened this issue Jan 21, 2021 · 2 comments
Open

Read mulltiple sequences from a single Fasta file into an assembly #30

RagnarGrootKoerkamp opened this issue Jan 21, 2021 · 2 comments
Assignees
@RagnarGrootKoerkamp

Comments

@RagnarGrootKoerkamp
Copy link
Contributor

The RefSeq fna files sometimes contain multiple sequences. We should run each sketch method on all of them, and appropriately merge the results into a single sketch for the entire assemble (i.e. the set of chromosomes/...).
@RagnarGrootKoerkamp RagnarGrootKoerkamp self-assigned this Jan 21, 2021
@jianshu93
Copy link

is this solved now? I think tensor slide also works for fragmented genomes while ordered minhash does not.

thanks

Jianshu

@danieldanciu
Copy link
Contributor

This was not implemented and its unlikely that we ever will. Sorry!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@RagnarGrootKoerkamp RagnarGrootKoerkamp

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@danieldanciu @RagnarGrootKoerkamp @jianshu93