diff --git a/.github/workflows/pr.yaml b/.github/workflows/pr.yaml
index 3d6df1ceb38..a2a91d1794b 100644
--- a/.github/workflows/pr.yaml
+++ b/.github/workflows/pr.yaml
@@ -88,7 +88,7 @@ jobs:
     needs: [conda-cpp-build, changed-files]
     secrets: inherit
     uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-tests.yaml@branch-24.10
-    if: fromJSON(needs.changed-files.outputs.transformed_output).test_cpp
+    if: fromJSON(needs.changed-files.outputs.changed_file_groups).test_cpp
     with:
       build_type: pull-request
   conda-cpp-checks:
@@ -109,14 +109,14 @@ jobs:
     needs: [conda-python-build, changed-files]
     secrets: inherit
     uses: rapidsai/shared-workflows/.github/workflows/conda-python-tests.yaml@branch-24.10
-    if: fromJSON(needs.changed-files.outputs.transformed_output).test_python
+    if: fromJSON(needs.changed-files.outputs.changed_file_groups).test_python
     with:
       build_type: pull-request
   conda-notebook-tests:
     needs: [conda-python-build, changed-files]
     secrets: inherit
     uses: rapidsai/shared-workflows/.github/workflows/custom-job.yaml@branch-24.10
-    if: fromJSON(needs.changed-files.outputs.transformed_output).test_notebooks
+    if: fromJSON(needs.changed-files.outputs.changed_file_groups).test_notebooks
     with:
       build_type: pull-request
       node_type: "gpu-v100-latest-1"
@@ -148,7 +148,7 @@ jobs:
     needs: [wheel-build-pylibcugraph, changed-files]
     secrets: inherit
     uses: rapidsai/shared-workflows/.github/workflows/wheels-test.yaml@branch-24.10
-    if: fromJSON(needs.changed-files.outputs.transformed_output).test_python
+    if: fromJSON(needs.changed-files.outputs.changed_file_groups).test_python
     with:
       build_type: pull-request
       script: ci/test_wheel_pylibcugraph.sh
@@ -166,7 +166,7 @@ jobs:
     needs: [wheel-build-cugraph, changed-files]
     secrets: inherit
     uses: rapidsai/shared-workflows/.github/workflows/wheels-test.yaml@branch-24.10
-    if: fromJSON(needs.changed-files.outputs.transformed_output).test_python
+    if: fromJSON(needs.changed-files.outputs.changed_file_groups).test_python
     with:
       build_type: pull-request
       script: ci/test_wheel_cugraph.sh
@@ -181,7 +181,7 @@ jobs:
     needs: [wheel-build-nx-cugraph, changed-files]
     secrets: inherit
     uses: rapidsai/shared-workflows/.github/workflows/wheels-test.yaml@branch-24.10
-    if: fromJSON(needs.changed-files.outputs.transformed_output).test_python
+    if: fromJSON(needs.changed-files.outputs.changed_file_groups).test_python
     with:
       build_type: pull-request
       script: ci/test_wheel_nx-cugraph.sh
@@ -196,7 +196,7 @@ jobs:
     needs: [wheel-build-cugraph-dgl, changed-files]
     secrets: inherit
     uses: rapidsai/shared-workflows/.github/workflows/wheels-test.yaml@branch-24.10
-    if: fromJSON(needs.changed-files.outputs.transformed_output).test_python
+    if: fromJSON(needs.changed-files.outputs.changed_file_groups).test_python
     with:
       build_type: pull-request
       script: ci/test_wheel_cugraph-dgl.sh
@@ -212,7 +212,7 @@ jobs:
     needs: [wheel-build-cugraph-pyg, changed-files]
     secrets: inherit
     uses: rapidsai/shared-workflows/.github/workflows/wheels-test.yaml@branch-24.10
-    if: fromJSON(needs.changed-files.outputs.transformed_output).test_python
+    if: fromJSON(needs.changed-files.outputs.changed_file_groups).test_python
     with:
       build_type: pull-request
       script: ci/test_wheel_cugraph-pyg.sh
@@ -227,7 +227,7 @@ jobs:
     needs: [wheel-build-cugraph-equivariant, changed-files]
     secrets: inherit
     uses: rapidsai/shared-workflows/.github/workflows/wheels-test.yaml@branch-24.10
-    if: fromJSON(needs.changed-files.outputs.transformed_output).test_python
+    if: fromJSON(needs.changed-files.outputs.changed_file_groups).test_python
     with:
       build_type: pull-request
       script: ci/test_wheel_cugraph-equivariant.sh