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Ramses: R package for Antimicrobial Stewardship & Surveillance

R build status Codecov test coverage Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public. license DOI

Ramses is an analytical software package helping hospitals to monitor their antimicrobial prescribing and the management of infections using routine electronic health records.

Overview

Ramses is a start-to-finish tool for data warehousing and analysis, supporting:

  • initial data preparation and validation;
  • database loading and transformation
  • analyses of antibiotic consumption, initiation, and de-escalation
  • analyses of infection diagnosing and treatment.

Ramses supports routine electronic health records:

  • admission/discharge/transfer data and ward movements
  • antibiotic prescription and administration records
  • microbiology order requests and results
  • other clinical investigations (blood counts, vitals, point of care tests. etc.).

Features

  • measuring antibiotic consumption
  • integration with the AMR package for classification/prediction of resistance phenotypes
  • compatible with DuckDB and PostgreSQL databases

Funders

National Institute of Health Research    Economic and Social Research Council    Rosetree Trust

Licence

Copyright © 2022 University College London

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.