From 3cf2b02c613a29e5151db5298b221d0d1e66f47b Mon Sep 17 00:00:00 2001 From: Ernest Prabhakar Date: Wed, 4 Oct 2023 22:02:04 -0700 Subject: [PATCH] remove Python from README --- README.md | 26 -------------------------- 1 file changed, 26 deletions(-) diff --git a/README.md b/README.md index b61f9f09..eaf06eb6 100644 --- a/README.md +++ b/README.md @@ -15,25 +15,6 @@ to read and write versioned Quilt packages stored on Amazon S3. Use the following four steps to configure NextFlow Tower or your command-line environment. -1. Install the `quilt3` command-line tool - -This is distributed as an open source Python package you can install using `pip3`, -and must be available in the PATH used by `nextflow`. - -```bash -yum install python3-pip -y -yum install git -y -pip3 install quilt3 -which quilt3 -``` - -The above instructions use the 'yum' package manager, -which NextFlow Tower uses in the "Pre-run script" -when you edit the Pipeline settings from the Launchpad. - -If you are running from the command-line, you may need to use your own package manager -(or just skip those lines if you already have Python and Git). - 1. Enable the `nf-quilt` plugin The usual way to enable a plugin is to add the following to your `nextflow.config` file, @@ -183,13 +164,6 @@ git clone https://github.com/quiltdata/nf-quilt.git cd ./nf-quilt ``` -You also need to use Python to install the `quilt3` command-line tool used by `nf-quilt`: - -```bash -pip install quilt3 -which quilt3 -``` - ### Unit Testing You can compile run unit tests with: