From 80585848606d6759d3a820e73b13d32785bdf77f Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Thu, 5 Dec 2024 16:44:18 -0800 Subject: [PATCH 1/2] remove nf-validation from subworkflow --- subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf | 2 -- 1 file changed, 2 deletions(-) diff --git a/subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf b/subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf index 0c4307b5..c83a843f 100644 --- a/subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf +++ b/subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf @@ -9,8 +9,6 @@ */ include { UTILS_NFVALIDATION_PLUGIN } from '../../nf-core/utils_nfvalidation_plugin' -include { fromSamplesheet } from 'plugin/nf-validation' -include { paramsSummaryMap } from 'plugin/nf-validation' include { UTILS_NEXTFLOW_PIPELINE } from '../../nf-core/utils_nextflow_pipeline' include { completionEmail } from '../../nf-core/utils_nfcore_pipeline' include { completionSummary } from '../../nf-core/utils_nfcore_pipeline' From 764fd185cdde90bdaad04128b4083769ec3ce150 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Thu, 5 Dec 2024 16:47:56 -0800 Subject: [PATCH 2/2] remove nfvalidation subworkflow --- subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf | 1 - 1 file changed, 1 deletion(-) diff --git a/subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf b/subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf index c83a843f..971c89be 100644 --- a/subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf +++ b/subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf @@ -8,7 +8,6 @@ ======================================================================================== */ -include { UTILS_NFVALIDATION_PLUGIN } from '../../nf-core/utils_nfvalidation_plugin' include { UTILS_NEXTFLOW_PIPELINE } from '../../nf-core/utils_nextflow_pipeline' include { completionEmail } from '../../nf-core/utils_nfcore_pipeline' include { completionSummary } from '../../nf-core/utils_nfcore_pipeline'