From 16ed1ea0c141f90867f6bf5809fc3f3e6731344d Mon Sep 17 00:00:00 2001 From: Maxim V4S Date: Mon, 13 Jan 2025 16:21:46 +0300 Subject: [PATCH] feat: move config to separated repo --- poetry.lock | 940 ++++++++++-------- pyproject.toml | 4 +- qualibrate_runner/__main__.py | 3 +- qualibrate_runner/api/dependencies.py | 15 +- qualibrate_runner/cli/__init__.py | 3 +- qualibrate_runner/cli/config.py | 162 --- qualibrate_runner/cli/start.py | 7 +- qualibrate_runner/config/__init__.py | 14 +- qualibrate_runner/config/file.py | 58 -- qualibrate_runner/config/models.py | 15 +- .../config/references/__init__.py | 0 qualibrate_runner/config/references/models.py | 19 - .../config/references/resolvers.py | 202 ---- qualibrate_runner/config/resolvers.py | 36 +- qualibrate_runner/config/validation.py | 46 - qualibrate_runner/config/vars.py | 6 +- 16 files changed, 553 insertions(+), 977 deletions(-) delete mode 100644 qualibrate_runner/cli/config.py delete mode 100644 qualibrate_runner/config/file.py 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python-versions = "^3.9" -content-hash = "91d16249b5f4468c0f7d423fa0bc3ce671c475700ae121d472831f3778892c6b" +content-hash = "e4fe8ff734bf2dfe8fc7f457824a30304c9c4e63b82fa84c99ba4c94191d5570" diff --git a/pyproject.toml b/pyproject.toml index 51f5a3e..6c212a1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -15,6 +15,7 @@ tomli = { version = "^2.0.1", python = "<3.11" } tomli-w = "^1.0.0" jsonpatch = "^1.33" qualibrate-core = "^0.2.0" +qualibrate-config = "^0.1.0" [tool.poetry.group.dev.dependencies] mypy = "^1.10.0" @@ -22,7 +23,8 @@ ruff = "^0.7.0" poethepoet = "^0.26.1" #[tool.poetry.group.qm-dev.dependencies] -#qualibrate-core = {path = "../qualibrate-core", optional = true} +#qualibrate-config = {path = "../qualibrate-config", develop = true} +#qualibrate-core = {path = "../qualibrate-core", develop = true} [tool.poetry.scripts] qualibrate-runner = "qualibrate_runner.__main__:main" diff --git a/qualibrate_runner/__main__.py b/qualibrate_runner/__main__.py index 7bd6e9f..4e62e33 100644 --- a/qualibrate_runner/__main__.py +++ b/qualibrate_runner/__main__.py @@ -1,6 +1,7 @@ import click +from qualibrate_config.cli.config import config_command -from qualibrate_runner.cli import config_command, start_command +from qualibrate_runner.cli import start_command @click.group() diff --git a/qualibrate_runner/api/dependencies.py b/qualibrate_runner/api/dependencies.py index 8b02970..06017eb 100644 --- a/qualibrate_runner/api/dependencies.py +++ b/qualibrate_runner/api/dependencies.py @@ -1,14 +1,11 @@ from collections.abc import Mapping from functools import cache -from typing import Annotated +from typing import Annotated, cast from fastapi import Depends, HTTPException +from qualibrate_config.models import CalibrationLibraryConfig -from qualibrate_runner.config import ( - QualibrateRunnerSettings, - State, - get_settings, -) +from qualibrate_runner.config import State, get_settings from qualibrate_runner.core.types import QGraphType, QLibraryType, QNodeType @@ -19,11 +16,9 @@ def get_state() -> State: @cache def get_cached_library( - settings: Annotated[QualibrateRunnerSettings, Depends(get_settings)], + config: Annotated[CalibrationLibraryConfig, Depends(get_settings)], ) -> QLibraryType: - return settings.calibration_library_resolver( - settings.calibration_library_folder - ) + return cast(QLibraryType, config.resolver(config.folder)) def get_library( diff --git a/qualibrate_runner/cli/__init__.py b/qualibrate_runner/cli/__init__.py index 85007c5..ce793ab 100644 --- a/qualibrate_runner/cli/__init__.py +++ b/qualibrate_runner/cli/__init__.py @@ -1,4 +1,3 @@ -from .config import config_command from .start import start_command -__all__ = ["start_command", "config_command"] +__all__ = ["start_command"] diff --git a/qualibrate_runner/cli/config.py b/qualibrate_runner/cli/config.py deleted file mode 100644 index bb3e5a0..0000000 --- a/qualibrate_runner/cli/config.py +++ /dev/null @@ -1,162 +0,0 @@ -import os -import sys -from collections.abc import Mapping -from pathlib import Path -from typing import Any - -import click -import tomli_w -from click.core import ParameterSource - -from qualibrate_runner.config import ( - CONFIG_KEY as QUALIBRATE_RUNNER_CONFIG_KEY, -) -from qualibrate_runner.config import ( - DEFAULT_CONFIG_FILENAME, - QUALIBRATE_PATH, - QualibrateRunnerSettings, - get_config_file, -) -from qualibrate_runner.config.validation import get_config_model_or_print_error - -if sys.version_info[:2] < (3, 11): - import tomli as tomllib -else: - import tomllib - -__all__ = ["config_command"] - - -def not_default(ctx: click.Context, arg_key: str) -> bool: - return ctx.get_parameter_source(arg_key) in ( - ParameterSource.COMMANDLINE, - ParameterSource.ENVIRONMENT, - ) - - -def get_config(config_path: Path) -> tuple[dict[str, Any], Path]: - """Returns config and path to file""" - config_file = get_config_file(config_path, raise_not_exists=False) - if config_file.is_file(): - return tomllib.loads(config_file.read_text()), config_path - return {}, config_file - - -def _config_from_sources( - ctx: click.Context, from_file: dict[str, Any] -) -> dict[str, Any]: - config_keys = QualibrateRunnerSettings.model_fields.keys() - runner_mapping: dict[str, str] = {k: k for k in config_keys} - for arg_key, arg_value in ctx.params.items(): - not_default_arg = not_default(ctx, arg_key) - if arg_key in runner_mapping and ( - not_default_arg or runner_mapping[arg_key] not in from_file - ): - from_file[runner_mapping[arg_key]] = arg_value - return from_file - - -def write_config( - config_file: Path, - common_config: dict[str, Any], - qrs: QualibrateRunnerSettings, - confirm: bool = True, -) -> None: - exported_data = qrs.model_dump(mode="json") - if confirm: - _confirm(config_file, exported_data) - if not config_file.parent.exists(): - config_file.parent.mkdir(parents=True) - common_config[QUALIBRATE_RUNNER_CONFIG_KEY] = exported_data - with config_file.open("wb") as f_out: - tomli_w.dump(common_config, f_out) - - -def _print_config(data: Mapping[str, Any], depth: int = 0) -> None: - max_key_len = max(map(len, map(str, data.keys()))) - click.echo( - os.linesep.join( - f"{' ' * 4 * depth}{f'{k} :':<{max_key_len + 3}} {v}" - for k, v in data.items() - if not isinstance(v, Mapping) - ) - ) - mappings = filter(lambda x: isinstance(x[1], Mapping), data.items()) - for mapping_k, mapping_v in mappings: - click.echo(f"{' ' * 4 * depth}{mapping_k} :") - _print_config(mapping_v, depth + 1) - - -def _confirm(config_file: Path, exported_data: dict[str, Any]) -> None: - click.echo(f"Config file path: {config_file}") - click.echo(click.style("Generated config:", bold=True)) - _print_config(exported_data) - confirmed = click.confirm("Do you confirm config?", default=True) - if not confirmed: - click.echo( - click.style( - ( - "The configuration has not been confirmed. " - "Rerun config script." - ), - fg="yellow", - ) - ) - exit(1) - - -@click.command(name="config") -@click.option( - "--config-path", - type=click.Path( - exists=False, - path_type=Path, - ), - default=QUALIBRATE_PATH / DEFAULT_CONFIG_FILENAME, - show_default=True, -) -@click.option( - "--auto-accept", - type=bool, - is_flag=True, - default=False, - show_default=True, -) -@click.option( - "--overwrite", - type=bool, - default=False, - is_flag=True, - help="Ignore existing config and force overwrite values", -) -@click.option( - "--calibration-library-resolver", - type=click.STRING, - default="qualibrate.QualibrationLibrary", -) -@click.option( - "--calibration-library-folder", - type=click.Path(exists=True, file_okay=False, dir_okay=True), - default=QUALIBRATE_PATH / "calibrations", -) -@click.pass_context -def config_command( - ctx: click.Context, - config_path: Path, - auto_accept: bool, - overwrite: bool, - calibration_library_resolver: str, - calibration_library_folder: Path, -) -> None: - common_config, config_file = get_config(config_path) - runner_config = ( - common_config.get(QUALIBRATE_RUNNER_CONFIG_KEY, {}) - if not overwrite - else {} - ) - runner_config = _config_from_sources(ctx, runner_config) - - qrs = get_config_model_or_print_error(runner_config) - if qrs is None: - return - write_config(config_file, common_config, qrs, confirm=not auto_accept) diff --git a/qualibrate_runner/cli/start.py b/qualibrate_runner/cli/start.py index bd96bfb..78ef04e 100644 --- a/qualibrate_runner/cli/start.py +++ b/qualibrate_runner/cli/start.py @@ -2,12 +2,9 @@ from pathlib import Path import click +from qualibrate_config.vars import DEFAULT_CONFIG_FILENAME, QUALIBRATE_PATH -from qualibrate_runner.config import ( - CONFIG_PATH_ENV_NAME, - DEFAULT_CONFIG_FILENAME, - QUALIBRATE_PATH, -) +from qualibrate_runner.config import CONFIG_PATH_ENV_NAME @click.command(name="start") diff --git a/qualibrate_runner/config/__init__.py b/qualibrate_runner/config/__init__.py index 076ad1d..d58e492 100644 --- a/qualibrate_runner/config/__init__.py +++ b/qualibrate_runner/config/__init__.py @@ -1,24 +1,16 @@ -from .file import get_config_file, read_config_file -from .models import QualibrateRunnerSettings, State +from .models import State from .resolvers import get_config_path, get_settings from .vars import ( CONFIG_KEY, CONFIG_PATH_ENV_NAME, - DEFAULT_CONFIG_FILENAME, - DEFAULT_QUALIBRATE_CONFIG_FILENAME, - QUALIBRATE_PATH, + DEFAULT_QUALIBRATE_RUNNER_CONFIG_FILENAME, ) __all__ = [ "CONFIG_KEY", - "DEFAULT_CONFIG_FILENAME", - "DEFAULT_QUALIBRATE_CONFIG_FILENAME", - "QUALIBRATE_PATH", + "DEFAULT_QUALIBRATE_RUNNER_CONFIG_FILENAME", "CONFIG_PATH_ENV_NAME", "State", - "QualibrateRunnerSettings", - "get_config_file", - "read_config_file", "get_config_path", "get_settings", ] diff --git a/qualibrate_runner/config/file.py b/qualibrate_runner/config/file.py deleted file mode 100644 index c9bed22..0000000 --- a/qualibrate_runner/config/file.py +++ /dev/null @@ -1,58 +0,0 @@ -import sys -from pathlib import Path -from typing import Any, Optional, Union - -from qualibrate_runner.config.references.resolvers import resolve_references -from qualibrate_runner.config.vars import ( - DEFAULT_CONFIG_FILENAME, - DEFAULT_QUALIBRATE_CONFIG_FILENAME, - QUALIBRATE_PATH, -) - -if sys.version_info[:2] < (3, 11): - import tomli as tomllib -else: - import tomllib - - -__all__ = ["get_config_file", "read_config_file"] - - -def _get_config_file_from_dir( - dir_path: Path, raise_not_exists: bool = True -) -> Path: - default_qualibrate = dir_path / DEFAULT_QUALIBRATE_CONFIG_FILENAME - if default_qualibrate.is_file(): - return default_qualibrate - default_common = dir_path / DEFAULT_CONFIG_FILENAME - if default_common.is_file(): - return default_common - if raise_not_exists: - raise FileNotFoundError(f"Config file in dir {dir_path} does not exist") - return default_common - - -def get_config_file( - config_path: Optional[Union[str, Path]], raise_not_exists: bool = True -) -> Path: - if config_path is not None: - config_path_ = Path(config_path) - if config_path_.is_file(): - return config_path_ - if config_path_.is_dir(): - return _get_config_file_from_dir(config_path_) - if raise_not_exists: - raise OSError("Unexpected config file path") - return config_path_ - if config_path is None: - return _get_config_file_from_dir(QUALIBRATE_PATH) - - -def read_config_file( - config_file: Path, solve_references: bool = True -) -> dict[str, Any]: - with config_file.open("rb") as fin: - config = tomllib.load(fin) - if not solve_references: - return config - return resolve_references(config) diff --git a/qualibrate_runner/config/models.py b/qualibrate_runner/config/models.py index 5029f8a..0e3b385 100644 --- a/qualibrate_runner/config/models.py +++ b/qualibrate_runner/config/models.py @@ -1,11 +1,9 @@ -from pathlib import Path -from typing import Callable, Optional, Union +from typing import Optional, Union -from pydantic import BaseModel, ConfigDict, DirectoryPath, ImportString -from pydantic_settings import BaseSettings, SettingsConfigDict +from pydantic import BaseModel, ConfigDict from qualibrate_runner.core.models.last_run import LastRun, RunStatus -from qualibrate_runner.core.types import QGraphType, QLibraryType, QNodeType +from qualibrate_runner.core.types import QGraphType, QNodeType class State(BaseModel): @@ -20,10 +18,3 @@ def is_running(self) -> bool: self.last_run is not None and self.last_run.status == RunStatus.RUNNING ) - - -class QualibrateRunnerSettings(BaseSettings): - model_config = SettingsConfigDict(frozen=True) - - calibration_library_resolver: ImportString[Callable[[Path], QLibraryType]] - calibration_library_folder: DirectoryPath diff --git a/qualibrate_runner/config/references/__init__.py b/qualibrate_runner/config/references/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/qualibrate_runner/config/references/models.py b/qualibrate_runner/config/references/models.py deleted file mode 100644 index 888a87b..0000000 --- a/qualibrate_runner/config/references/models.py +++ /dev/null @@ -1,19 +0,0 @@ -from typing import Any - -from pydantic import BaseModel, Field - - -class Reference(BaseModel): - config_path: str - reference_path: str - index_start: int - index_end: int - value: Any = None - solved: bool = False - - -class PathWithSolvingReferences(BaseModel): - config_path: str - value: Any = None - solved: bool = False - references: list[Reference] = Field(default_factory=list) diff --git a/qualibrate_runner/config/references/resolvers.py b/qualibrate_runner/config/references/resolvers.py deleted file mode 100644 index 7c8cf11..0000000 --- a/qualibrate_runner/config/references/resolvers.py +++ /dev/null @@ -1,202 +0,0 @@ -from collections import defaultdict -from collections.abc import Mapping, Sequence -from typing import Any, Optional, cast - -import jsonpatch -import jsonpointer - -from qualibrate_runner.config.references.models import ( - PathWithSolvingReferences, - Reference, -) - -TEMPLATE_START = "${#" - - -def find_all_references( - document: Mapping[str, Any], current_path: Optional[list[str]] = None -) -> Sequence[Reference]: - if current_path is None: - current_path = [] - to_resolve: list[Reference] = [] - for key, value in document.items(): - if isinstance(value, Mapping): - to_resolve.extend(find_all_references(value, current_path + [key])) - elif isinstance(value, str): - config_path = "/" + "/".join(current_path + [key]) - template_start_index = value.find(TEMPLATE_START) - while template_start_index != -1: - template_end_index = value.find("}", template_start_index) - if template_end_index == -1: - break - to_resolve.append( - Reference( - config_path=config_path, - reference_path=value[ - template_start_index + 3 : template_end_index - ].strip(), - index_start=template_start_index, - index_end=template_end_index, - ) - ) - template_start_index = value.find( - TEMPLATE_START, template_end_index + 1 - ) - return to_resolve - - -def check_cycles_in_references( - references: Mapping[str, Sequence[str]], -) -> tuple[bool, Optional[Sequence[str]]]: - """Return True if the references has a cycle. - - >>> check_cycles_in_references({"a": ("b",), "b": ("c",), "c": ("a",)}) - (True, ['a', 'b', 'c', 'a']) - >>> check_cycles_in_references({"a": ("b",), "b": ("c",), "c": ("d",)}) - (False, None) - - """ - path: list[str] = [] - visited: set[str] = set() - cycled_item: str = "" - - def visit(vertex: str) -> bool: - nonlocal cycled_item - if vertex in visited: - return False - visited.add(vertex) - path.append(vertex) - for neighbour in references.get(vertex, ()): - if neighbour in path or visit(neighbour): - cycled_item = vertex - return True - path.pop() # == path.remove(vertex): - return False - - if any(visit(v) for v in references): - return True, [*path, cycled_item] - return False, None - - -def _resolve_references( - path: str, - path_with_references: dict[str, PathWithSolvingReferences], - original_config: Mapping[str, Any], - solved_references: dict[str, Any], -) -> None: - if path_with_references[path].solved: - # path already solved - return - config_item = path_with_references[path] - references: list[Reference] = config_item.references - not_solved_refs = filter(lambda ref: not ref.solved, references) - for ref in not_solved_refs: - if ref.reference_path in solved_references: - ref.value = solved_references[ref.reference_path] - ref.solved = True - elif ref.reference_path in path_with_references: - _resolve_references( - ref.reference_path, - path_with_references, - original_config, - solved_references, - ) - if ref.reference_path not in solved_references: - raise ValueError( - f"Subreference '{ref.reference_path}' " - f"for '{ref.config_path}' not solved." - ) - ref.value = solved_references[ref.reference_path] - ref.solved = True - else: - value = jsonpointer.resolve_pointer( - original_config, ref.reference_path, None - ) - if value is None: - raise ValueError( - f"Can't resolve reference item '{ref.reference_path}' " - f"for config path '{ref.config_path}'" - ) - ref.value = value - ref.solved = True - solved_references[ref.reference_path] = value - verify_all_solved = all(map(lambda ref: ref.solved, references)) - if not verify_all_solved: - not_solved_refs = filter(lambda ref: not ref.solved, references) - references_errors = ( - ( - f"- config path: '{ref.config_path}', " - f"reference: '{ref.reference_path}';" - ) - for ref in not_solved_refs - ) - raise ValueError( - "\n".join( - [ - "Some issues with solving references. Issued references:", - *references_errors, - ] - ) - ) - config_value = jsonpointer.resolve_pointer( - original_config, config_item.config_path, None - ) - if config_value is None or not isinstance(config_value, str): - raise ValueError( - f"Can't resolve config item '{config_item.config_path}'" - ) - for ref in sorted( - references, key=lambda ref: ref.index_start, reverse=True - ): - config_value = ( - f"{config_value[:ref.index_start]}" - f"{ref.value}{config_value[ref.index_end + 1:]}" - ) - config_item.value = config_value - config_item.solved = True - solved_references[config_item.config_path] = config_value - - -def resolve_references(config: dict[str, Any]) -> dict[str, Any]: - references = find_all_references(config) - references_seq = defaultdict(list) - for reference in references: - references_seq[reference.config_path].append(reference.reference_path) - has_cycles, cycle = check_cycles_in_references(references_seq) - if has_cycles: - raise ValueError(f"Config contains cycle: {cycle}") - solved_references: dict[str, Any] = {} - path_with_references: dict[str, PathWithSolvingReferences] = {} - for reference in references: - path_with_refs = path_with_references.setdefault( - reference.config_path, - PathWithSolvingReferences(config_path=reference.config_path), - ) - path_with_refs.references.append(reference) - for path in path_with_references: - _resolve_references( - path, - path_with_references, - config, - solved_references, - ) - patches = [ - {"op": "replace", "path": path.config_path, "value": path.value} - for path in path_with_references.values() - ] - return cast(dict[str, Any], jsonpatch.apply_patch(config, patches)) - - -if __name__ == "__main__": - _config = { - "qualibrate": {"project": "my_project"}, - # "qualibrate": {"project": "${#/data_handler/project}"}, - "data_handler": { - "root_data_folder": "/data/${#/data_handler/project}/subpath", - "project": "${#/qualibrate/project}", - # "project": "${#/qualibrate/project_}", - }, - } - res = resolve_references(_config) - print(_config) - print(res) diff --git a/qualibrate_runner/config/resolvers.py b/qualibrate_runner/config/resolvers.py index 39def5c..9dd7f44 100644 --- a/qualibrate_runner/config/resolvers.py +++ b/qualibrate_runner/config/resolvers.py @@ -4,37 +4,33 @@ from typing import Annotated from fastapi import Depends +from qualibrate_config.file import get_config_file +from qualibrate_config.models import CalibrationLibraryConfig +from qualibrate_config.resolvers import get_qualibrate_config -from qualibrate_runner.config.file import get_config_file -from qualibrate_runner.config.models import QualibrateRunnerSettings -from qualibrate_runner.config.validation import ( - get_config_model_or_print_error, - get_config_solved_references_or_print_error, -) from qualibrate_runner.config.vars import ( - CONFIG_KEY, CONFIG_PATH_ENV_NAME, + DEFAULT_QUALIBRATE_RUNNER_CONFIG_FILENAME, ) -__all__ = [ - "get_config_path", - "get_settings", -] +__all__ = ["get_config_path", "get_settings"] @lru_cache def get_config_path() -> Path: - return get_config_file(os.environ.get(CONFIG_PATH_ENV_NAME)) + return get_config_file( + config_path=os.environ.get(CONFIG_PATH_ENV_NAME), + default_config_specific_filename=DEFAULT_QUALIBRATE_RUNNER_CONFIG_FILENAME, + raise_not_exists=True, + ) @lru_cache def get_settings( config_path: Annotated[Path, Depends(get_config_path)], -) -> QualibrateRunnerSettings: - config = get_config_solved_references_or_print_error(config_path) - if config is None: - raise RuntimeError("Couldn't read config file") - qrs = get_config_model_or_print_error(config.get(CONFIG_KEY, {})) - if qrs is None: - raise RuntimeError("Couldn't read config file") - return qrs +) -> CalibrationLibraryConfig: + q_config = get_qualibrate_config(config_path) + q_lib = q_config.calibration_library + if q_lib is None: + raise ValueError("Calibration library is not specified in config") + return q_lib diff --git a/qualibrate_runner/config/validation.py b/qualibrate_runner/config/validation.py deleted file mode 100644 index bb091dd..0000000 --- a/qualibrate_runner/config/validation.py +++ /dev/null @@ -1,46 +0,0 @@ -from collections.abc import Mapping -from pathlib import Path -from typing import Any, Optional - -import click -from pydantic import ValidationError - -from qualibrate_runner.config.file import read_config_file -from qualibrate_runner.config.models import QualibrateRunnerSettings -from qualibrate_runner.config.vars import CONFIG_KEY - -SUGGEST_MSG = ( - "Can't parse existing config. Fix it or overwrite " - "by default values using `--overwrite` flag." -) - - -def get_config_solved_references_or_print_error( - config_path: Path, -) -> Optional[dict[str, Any]]: - try: - return read_config_file(config_path, solve_references=True) - except ValueError as ex: - click.secho(str(ex), fg="red") - click.secho(SUGGEST_MSG, fg="yellow") - return None - - -def get_config_model_or_print_error( - config: Mapping[str, Any], -) -> Optional[QualibrateRunnerSettings]: - try: - return QualibrateRunnerSettings(**config) - except ValidationError as ex: - errors = [ - ( - f"Message: {error.get('msg')}. " - "Path: " - f"{'.'.join([CONFIG_KEY, *map(str, error.get('loc', []))])}. " - f"Value: {error.get('input')}" - ) - for error in ex.errors() - ] - click.secho("\n".join(errors), fg="red") - click.secho(SUGGEST_MSG, fg="yellow") - return None diff --git a/qualibrate_runner/config/vars.py b/qualibrate_runner/config/vars.py index e529b53..9919c85 100644 --- a/qualibrate_runner/config/vars.py +++ b/qualibrate_runner/config/vars.py @@ -1,7 +1,3 @@ -from pathlib import Path - CONFIG_KEY = "qualibrate_runner" -QUALIBRATE_PATH = Path().home() / ".qualibrate" -DEFAULT_CONFIG_FILENAME = "config.toml" -DEFAULT_QUALIBRATE_CONFIG_FILENAME = "qualibrate-runner.toml" +DEFAULT_QUALIBRATE_RUNNER_CONFIG_FILENAME = "qualibrate-runner.toml" CONFIG_PATH_ENV_NAME = "QUALIBRATE_RUNNER_CONFIG_FILE"