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diff --git a/evaluation/badges.html b/evaluation/badges.html
@@ -260,7 +260,7 @@ <h1 class="title">Journal badges</h1>
 <p><em>Caveat: Please note that these criteria are based on available information about each badge online, and that we have likely differences in our procedure (e.g.&nbsp;allowed troubleshooting for execution and reproduction, not under tight time pressure to complete). Moreover, we focus only on reproduction of the discrete-event simulation, and not on other aspects of the article. We cannot guarantee that the badges below would have been awarded in practice by these journals.</em></p>
 <section id="criteria" class="level2">
 <h2 class="anchored" data-anchor-id="criteria">Criteria</h2>
-<div id="9dd81398" class="cell" data-execution_count="1">
+<div id="517e2b64" class="cell" data-execution_count="1">
 <details class="code-fold">
 <summary>Code</summary>
 <div class="sourceCode cell-code" id="cb1"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> IPython.display <span class="im">import</span> display, Markdown</span>
@@ -393,7 +393,7 @@ <h2 class="anchored" data-anchor-id="criteria">Criteria</h2>
 </section>
 <section id="badges" class="level2">
 <h2 class="anchored" data-anchor-id="badges">Badges</h2>
-<div id="b69e9cee" class="cell" data-execution_count="2">
+<div id="c0323479" class="cell" data-execution_count="2">
 <details class="code-fold">
 <summary>Code</summary>
 <div class="sourceCode cell-code" id="cb2"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="co"># Full badge names</span></span>

diff --git a/evaluation/reproduction_report.html b/evaluation/reproduction_report.html
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diff --git a/logbook/logbook.html b/logbook/logbook.html
@@ -260,7 +260,7 @@ <h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-list
 
 <div class="quarto-listing quarto-listing-container-default" id="listing-listing">
 <div class="list quarto-listing-default">
-<div class="quarto-post image-right" data-index="0" data-categories="reproduction" data-listing-date-sort="1729209600000" data-listing-file-modified-sort="1729246075915" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="82">
+<div class="quarto-post image-right" data-index="0" data-categories="reproduction" data-listing-date-sort="1729209600000" data-listing-file-modified-sort="1729246813497" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="564">
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@@ -279,7 +279,7 @@ <h3 class="no-anchor listing-title">
 </div>
 </div>
 <div class="listing-description">
-<a href="../logbook/posts/2024_10_18/index.html" class="no-external">X. Total time used: X</a>
+<a href="../logbook/posts/2024_10_18/index.html" class="no-external">Review sensitivity analysis 100 million results, consensus on reproduction success, fixed issue with medication adherence scenarios and set these to re-run. Total time used…</a>
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+<div class="quarto-post image-right" data-index="1" data-categories="reproduction" data-listing-date-sort="1729036800000" data-listing-file-modified-sort="1729246813497" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="137">
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@@ -326,7 +326,7 @@ <h3 class="no-anchor listing-title">
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+<div class="quarto-post image-right" data-index="2" data-categories="reproduction" data-listing-date-sort="1728950400000" data-listing-file-modified-sort="1729246813493" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="275">
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-<div class="quarto-post image-right" data-index="3" data-categories="reproduction" data-listing-date-sort="1728864000000" data-listing-file-modified-sort="1729246075915" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="495">
+<div class="quarto-post image-right" data-index="3" data-categories="reproduction" data-listing-date-sort="1728864000000" data-listing-file-modified-sort="1729246813493" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="495">
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@@ -392,7 +392,7 @@ <h3 class="no-anchor listing-title">
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+<div class="quarto-post image-right" data-index="4" data-categories="reproduction" data-listing-date-sort="1728604800000" data-listing-file-modified-sort="1729246813493" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="131">
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+<div class="quarto-post image-right" data-index="5" data-categories="scope" data-listing-date-sort="1727136000000" data-listing-file-modified-sort="1729246813493" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="101">
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+<div class="quarto-post image-right" data-index="6" data-categories="reproduce" data-listing-date-sort="1726444800000" data-listing-file-modified-sort="1729246813493" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="150">
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@@ -491,7 +491,7 @@ <h3 class="no-anchor listing-title">
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+<div class="quarto-post image-right" data-index="7" data-categories="reproduce" data-listing-date-sort="1725926400000" data-listing-file-modified-sort="1729246813493" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="280">
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+<div class="quarto-post image-right" data-index="8" data-categories="reproduce" data-listing-date-sort="1725840000000" data-listing-file-modified-sort="1729246813493" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="319">
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+<div class="quarto-post image-right" data-index="9" data-categories="reproduce" data-listing-date-sort="1725580800000" data-listing-file-modified-sort="1729246813493" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="12" data-listing-word-count-sort="2240">
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@@ -590,7 +590,7 @@ <h3 class="no-anchor listing-title">
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+<div class="quarto-post image-right" data-index="10" data-categories="reproduce" data-listing-date-sort="1725494400000" data-listing-file-modified-sort="1729246813489" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5" data-listing-word-count-sort="971">
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+<div class="quarto-post image-right" data-index="11" data-categories="reproduce" data-listing-date-sort="1725408000000" data-listing-file-modified-sort="1729246813489" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="7" data-listing-word-count-sort="1250">
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+<div class="quarto-post image-right" data-index="12" data-categories="reproduce" data-listing-date-sort="1723593600000" data-listing-file-modified-sort="1729246813489" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="192">
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+<div class="quarto-post image-right" data-index="13" data-categories="reproduce" data-listing-date-sort="1723507200000" data-listing-file-modified-sort="1729246813489" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="564">
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@@ -722,7 +722,7 @@ <h3 class="no-anchor listing-title">
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-<div class="quarto-post image-right" data-index="14" data-categories="setup,read,scope" data-listing-date-sort="1722470400000" data-listing-file-modified-sort="1729246075911" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="501">
+<div class="quarto-post image-right" data-index="14" data-categories="setup,read,scope" data-listing-date-sort="1722470400000" data-listing-file-modified-sort="1729246813489" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="501">
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@@ -761,7 +761,7 @@ <h3 class="no-anchor listing-title">
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+<div class="quarto-post image-right" data-index="15" data-categories="setup" data-listing-date-sort="1722384000000" data-listing-file-modified-sort="1729246813489" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="273">
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diff --git a/logbook/posts/2024_07_31/index.html b/logbook/posts/2024_07_31/index.html
@@ -296,7 +296,7 @@ <h2 class="anchored" data-anchor-id="upload-code">16.34-16.46: Upload code</h2>
 </section>
 <section id="timings" class="level2">
 <h2 class="anchored" data-anchor-id="timings">Timings</h2>
-<div id="1ed1db0b" class="cell" data-execution_count="1">
+<div id="d5185f71" class="cell" data-execution_count="1">
 <div class="sourceCode cell-code" id="cb1"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> sys</span>
 <span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a>sys.path.append(<span class="st">'../'</span>)</span>
 <span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> timings <span class="im">import</span> calculate_times</span>

diff --git a/logbook/posts/2024_08_01/index.html b/logbook/posts/2024_08_01/index.html
@@ -321,7 +321,7 @@ <h2 class="anchored" data-anchor-id="read-the-article-and-outline-scope">11.09-1
 </section>
 <section id="timings" class="level2">
 <h2 class="anchored" data-anchor-id="timings">Timings</h2>
-<div id="1daecf06" class="cell" data-execution_count="1">
+<div id="f65a11cc" class="cell" data-execution_count="1">
 <div class="sourceCode cell-code" id="cb1"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> sys</span>
 <span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a>sys.path.append(<span class="st">'../'</span>)</span>
 <span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> timings <span class="im">import</span> calculate_times</span>

diff --git a/logbook/posts/2024_08_13/index.html b/logbook/posts/2024_08_13/index.html
@@ -317,7 +317,7 @@ <h2 class="anchored" data-anchor-id="import-epicr">16.01-16.41: Import epicR</h2
 </section>
 <section id="timings" class="level2">
 <h2 class="anchored" data-anchor-id="timings">Timings</h2>
-<div id="ff0143a1" class="cell" data-execution_count="1">
+<div id="4b5b3e14" class="cell" data-execution_count="1">
 <div class="sourceCode cell-code" id="cb2"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> sys</span>
 <span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a>sys.path.append(<span class="st">'../'</span>)</span>
 <span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> timings <span class="im">import</span> calculate_times</span>

diff --git a/logbook/posts/2024_08_14/index.html b/logbook/posts/2024_08_14/index.html
@@ -283,7 +283,7 @@ <h2 class="anchored" data-anchor-id="run-model">09.27-09.52, 10.20-10.21, 10.40-
 </section>
 <section id="timings" class="level2">
 <h2 class="anchored" data-anchor-id="timings">Timings</h2>
-<div id="04125517" class="cell" data-execution_count="1">
+<div id="efbf257c" class="cell" data-execution_count="1">
 <div class="sourceCode cell-code" id="cb2"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> sys</span>
 <span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a>sys.path.append(<span class="st">'../'</span>)</span>
 <span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> timings <span class="im">import</span> calculate_times</span>