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feat(reproduction): process results from 100 million base case
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@amyheather
amyheather committed Oct 15, 2024
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Binary file modified reproduction/outputs/appendix6-1.png
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34 changes: 17 additions & 17 deletions reproduction/outputs/tab3.csv
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"Scenario","Testing interval","Costs per patient","QALYs per patient","ICER","INMB (ranking)"
"S0: No case detection",NA,"$2149",12.545,NA,NA
"(S1a) CDQ ≥ 17 points","3 years","$2440",12.562,17669,"533(1)"
"(S1a) CDQ ≥ 17 points","5 years","$2355",12.556,19073,"335(2)"
"(S1b) Screening spirometry","3 years","$2362",12.553,26497,"189(5)"
"(S1b) Screening spirometry","5 years","$2298",12.552,22920,"177(8)"
"(S1c) CDQ + screening spirometry","3 years","$2387",12.55,46445,"18(16)"
"(S1c) CDQ + screening spirometry","5 years","$2314",12.551,27818,"132(9)"
"(S2a) Screening spirometry","3 years","$2286",12.553,18082,"242(4)"
"(S2a) Screening spirometry","5 years","$2241",12.549,27650,"74(11)"
"(S3a) CDQ ≥ 19.5 points","3 years","$2234",12.548,28714,"63(14)"
"(S3a) CDQ ≥ 19.5 points","5 years","$2203",12.548,22107,"68(12)"
"(S3b) CDQ ≥ 16.5 points","3 years","$2289",12.552,21354,"188(6)"
"(S3b) CDQ ≥ 16.5 points","5 years","$2245",12.552,13503,"260(3)"
"(S3c) Screening spirometry","3 years","$2253",12.549,28161,"81(10)"
"(S3c) Screening spirometry","5 years","$2220",12.55,14224,"178(7)"
"(S3d) CDQ + screening spirometry","3 years","$2262",12.549,33377,"56(15)"
"(S3d) CDQ + screening spirometry","5 years","$2223",12.548,26612,"65(13)"
"S0: No case detection",NA,"$2150",12.545,NA,NA
"(S1a) CDQ ≥ 17 points","3 years","$2439",12.56,19472,"453(1)"
"(S1a) CDQ ≥ 17 points","5 years","$2357",12.557,18717,"346(2)"
"(S1b) Screening spirometry","3 years","$2363",12.554,25644,"202(4)"
"(S1b) Screening spirometry","5 years","$2298",12.551,25236,"146(8)"
"(S1c) CDQ + screening spirometry","3 years","$2385",12.551,39678,"61(13)"
"(S1c) CDQ + screening spirometry","5 years","$2311",12.55,39400,"43(15)"
"(S2a) Screening spirometry","3 years","$2286",12.552,21002,"188(5)"
"(S2a) Screening spirometry","5 years","$2245",12.551,17109,"182(6)"
"(S3a) CDQ ≥ 19.5 points","3 years","$2234",12.548,34157,"39(16)"
"(S3a) CDQ ≥ 19.5 points","5 years","$2205",12.548,25648,"52(14)"
"(S3b) CDQ ≥ 16.5 points","3 years","$2291",12.553,19763,"216(3)"
"(S3b) CDQ ≥ 16.5 points","5 years","$2248",12.551,18093,"173(7)"
"(S3c) Screening spirometry","3 years","$2255",12.55,24778,"107(10)"
"(S3c) Screening spirometry","5 years","$2220",12.549,18842,"117(9)"
"(S3d) CDQ + screening spirometry","3 years","$2263",12.549,28562,"85(12)"
"(S3d) CDQ + screening spirometry","5 years","$2225",12.549,22545,"91(11)"
34 changes: 17 additions & 17 deletions reproduction/outputs/tab3_compare_to_original.csv
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"Scenario","Interval","CostpAgent_paper","CostpAgentAll","CostpAgentAll_repo","CostMyDiff","CostMyPerc","CostRepoDiff","CostRepoPerc","QALYpAgent_paper","QALYpAgentAll","QALYpAgentAll_repo","QALYMyDiff","QALYMyPerc","QALYRepoDiff","QALYRepoPerc","ICER_paper","ICERAdj","ICERAdj_repo","ICERMyDiff","ICERMyPerc","ICERRepoDiff","ICERRepoPerc","IncrementalNMB_paper","INMB","INMB_repo","INMBMyDiff","INMBMyPerc","INMBRepoDiff","INMBRepoPerc"
"S0",NA,2151,2149,2151,2,"0.1%",0,"0.0%",12.546,12.545,12.545,0.000999999999999446,"0%",0.000999999999999446,"0%",NA,NA,NA,NA,NA,NA,NA,NA,NA,0,NA,NA,NA,NA
"S1a","3 years",2438,2440,2439,-2,"-0.1%",-1,"0.0%",12.56,12.562,12.56,-0.00199999999999889,"0%",0,"0%",19632,17669,19665,1963,"11.1%",-33,"-0.2%",444,533,446,-89,"-16.7%",-2,"-0.40%"
"S1a","5 years",2356,2355,2355,1,"0.0%",1,"0.0%",12.556,12.556,12.557,0,"0%",-0.00100000000000122,"0%",19847,19073,16600,774,"4.1%",3247,"19.6%",312,335,411,-23,"-6.9%",-99,"-24.10%"
"S1b","3 years",2363,2362,2365,1,"0.0%",-2,"-0.1%",12.554,12.553,12.552,0.000999999999999446,"0%",0.00200000000000067,"0%",25894,26497,31076,-603,"-2.3%",-5182,"-16.7%",198,189,131,9,"4.8%",67,"51.10%"
"S1b","5 years",2296,2298,2298,-2,"-0.1%",-2,"-0.1%",12.552,12.552,12.551,0,"0%",0.000999999999999446,"0%",23187,22920,25501,267,"1.2%",-2314,"-9.1%",168,177,142,-9,"-5.1%",26,"18.30%"
"S1c","3 years",2386,2387,2386,-1,"0.0%",0,"0.0%",12.551,12.55,12.551,0.000999999999999446,"0%",0,"0%",46956,46445,42697,511,"1.1%",4259,"10.0%",15,18,40,-3,"-16.7%",-25,"-62.50%"
"S1c","5 years",2313,2314,2311,-1,"0.0%",2,"0.1%",12.55,12.551,12.551,-0.000999999999999446,"0%",-0.000999999999999446,"0%",38673,27818,29600,10855,"39.0%",9073,"30.7%",47,132,110,-85,"-64.4%",-63,"-57.30%"
"S2a","3 years",2286,2286,2287,0,"0.0%",-1,"0.0%",12.553,12.553,12.552,0,"0%",0.00100000000000122,"0%",18908,18082,21184,826,"4.6%",-2276,"-10.7%",223,242,186,-19,"-7.9%",37,"19.90%"
"S2a","5 years",2246,2241,2245,5,"0.2%",1,"0.0%",12.551,12.549,12.55,0.00200000000000067,"0%",0.000999999999999446,"0%",17514,27650,20394,-10136,"-36.7%",-2880,"-14.1%",176,74,137,102,"137.8%",39,"28.50%"
"S3a","3 years",2234,2234,2232,0,"0.0%",2,"0.1%",12.548,12.548,12.548,0,"0%",0,"0%",30366,28714,32247,1652,"5.8%",-1881,"-5.8%",54,63,45,-9,"-14.3%",9,"20.00%"
"S3a","5 years",2207,2203,2207,4,"0.2%",0,"0.0%",12.548,12.548,12.548,0,"0%",0,"0%",22636,22107,22694,529,"2.4%",-58,"-0.3%",68,68,67,0,"0.0%",1,"1.50%"
"S3b","3 years",2292,2289,2289,3,"0.1%",3,"0.1%",12.553,12.552,12.553,0.00100000000000122,"0%",0,"0%",18438,21354,18157,-2916,"-13.7%",281,"1.5%",241,188,243,53,"28.2%",-2,"-0.80%"
"S3b","5 years",2250,2245,2248,5,"0.2%",2,"0.1%",12.552,12.552,12.551,0,"0%",0.000999999999999446,"0%",16251,13503,17325,2748,"20.4%",-1074,"-6.2%",206,260,183,-54,"-20.8%",23,"12.60%"
"S3c","3 years",2256,2253,2255,3,"0.1%",1,"0.0%",12.55,12.549,12.55,0.00100000000000122,"0%",0,"0%",23972,28161,20700,-4189,"-14.9%",3272,"15.8%",114,81,148,33,"40.7%",-34,"-23.00%"
"S3c","5 years",2224,2220,2221,4,"0.2%",3,"0.1%",12.549,12.55,12.549,-0.00100000000000122,"0%",0,"0%",20278,14224,19250,6054,"42.6%",1028,"5.3%",107,178,113,-71,"-39.9%",-6,"-5.30%"
"S3d","3 years",2263,2262,2261,1,"0.0%",2,"0.1%",12.549,12.549,12.55,0,"0%",-0.00100000000000122,"0%",28245,33377,23462,-5132,"-15.4%",4783,"20.4%",86,56,124,30,"53.6%",-38,"-30.60%"
"S3d","5 years",2227,2223,2226,4,"0.2%",1,"0.0%",12.548,12.548,12.548,0,"0%",0,"0%",27591,26612,26517,979,"3.7%",1074,"4.1%",62,65,67,-3,"-4.6%",-5,"-7.50%"
"S0",NA,2151,2150,2151,1,"0.0%",0,"0.0%",12.546,12.545,12.545,0.000999999999999446,"0%",0.000999999999999446,"0%",NA,NA,NA,NA,NA,NA,NA,NA,NA,0,NA,NA,NA,NA
"S1a","3 years",2438,2439,2439,-1,"0.0%",-1,"0.0%",12.56,12.56,12.56,0,"0%",0,"0%",19632,19472,19665,160,"0.8%",-33,"-0.2%",444,453,446,-9,"-2.0%",-2,"-0.40%"
"S1a","5 years",2356,2357,2355,-1,"0.0%",1,"0.0%",12.556,12.557,12.557,-0.00100000000000122,"0%",-0.00100000000000122,"0%",19847,18717,16600,1130,"6.0%",3247,"19.6%",312,346,411,-34,"-9.8%",-99,"-24.10%"
"S1b","3 years",2363,2363,2365,0,"0.0%",-2,"-0.1%",12.554,12.554,12.552,0,"0%",0.00200000000000067,"0%",25894,25644,31076,250,"1.0%",-5182,"-16.7%",198,202,131,-4,"-2.0%",67,"51.10%"
"S1b","5 years",2296,2298,2298,-2,"-0.1%",-2,"-0.1%",12.552,12.551,12.551,0.000999999999999446,"0%",0.000999999999999446,"0%",23187,25236,25501,-2049,"-8.1%",-2314,"-9.1%",168,146,142,22,"15.1%",26,"18.30%"
"S1c","3 years",2386,2385,2386,1,"0.0%",0,"0.0%",12.551,12.551,12.551,0,"0%",0,"0%",46956,39678,42697,7278,"18.3%",4259,"10.0%",15,61,40,-46,"-75.4%",-25,"-62.50%"
"S1c","5 years",2313,2311,2311,2,"0.1%",2,"0.1%",12.55,12.55,12.551,0,"0%",-0.000999999999999446,"0%",38673,39400,29600,-727,"-1.8%",9073,"30.7%",47,43,110,4,"9.3%",-63,"-57.30%"
"S2a","3 years",2286,2286,2287,0,"0.0%",-1,"0.0%",12.553,12.552,12.552,0.00100000000000122,"0%",0.00100000000000122,"0%",18908,21002,21184,-2094,"-10.0%",-2276,"-10.7%",223,188,186,35,"18.6%",37,"19.90%"
"S2a","5 years",2246,2245,2245,1,"0.0%",1,"0.0%",12.551,12.551,12.55,0,"0%",0.000999999999999446,"0%",17514,17109,20394,405,"2.4%",-2880,"-14.1%",176,182,137,-6,"-3.3%",39,"28.50%"
"S3a","3 years",2234,2234,2232,0,"0.0%",2,"0.1%",12.548,12.548,12.548,0,"0%",0,"0%",30366,34157,32247,-3791,"-11.1%",-1881,"-5.8%",54,39,45,15,"38.5%",9,"20.00%"
"S3a","5 years",2207,2205,2207,2,"0.1%",0,"0.0%",12.548,12.548,12.548,0,"0%",0,"0%",22636,25648,22694,-3012,"-11.7%",-58,"-0.3%",68,52,67,16,"30.8%",1,"1.50%"
"S3b","3 years",2292,2291,2289,1,"0.0%",3,"0.1%",12.553,12.553,12.553,0,"0%",0,"0%",18438,19763,18157,-1325,"-6.7%",281,"1.5%",241,216,243,25,"11.6%",-2,"-0.80%"
"S3b","5 years",2250,2248,2248,2,"0.1%",2,"0.1%",12.552,12.551,12.551,0.000999999999999446,"0%",0.000999999999999446,"0%",16251,18093,17325,-1842,"-10.2%",-1074,"-6.2%",206,173,183,33,"19.1%",23,"12.60%"
"S3c","3 years",2256,2255,2255,1,"0.0%",1,"0.0%",12.55,12.55,12.55,0,"0%",0,"0%",23972,24778,20700,-806,"-3.3%",3272,"15.8%",114,107,148,7,"6.5%",-34,"-23.00%"
"S3c","5 years",2224,2220,2221,4,"0.2%",3,"0.1%",12.549,12.549,12.549,0,"0%",0,"0%",20278,18842,19250,1436,"7.6%",1028,"5.3%",107,117,113,-10,"-8.5%",-6,"-5.30%"
"S3d","3 years",2263,2263,2261,0,"0.0%",2,"0.1%",12.549,12.549,12.55,0,"0%",-0.00100000000000122,"0%",28245,28562,23462,-317,"-1.1%",4783,"20.4%",86,85,124,1,"1.2%",-38,"-30.60%"
"S3d","5 years",2227,2225,2226,2,"0.1%",1,"0.0%",12.548,12.549,12.548,-0.000999999999999446,"0%",0,"0%",27591,22545,26517,5046,"22.4%",1074,"4.1%",62,91,67,-29,"-31.9%",-5,"-7.50%"
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