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feat(reproduction): actual run with 100million for sensitivity analys…
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…is (earlier commit was accidentally 50 million)
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@amyheather
amyheather committed Oct 18, 2024
1 parent 831d330 commit 432e186
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Showing 112 changed files with 1,456 additions and 1,456 deletions.
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22 changes: 11 additions & 11 deletions reproduction/outputs/Sen1_No_Smoking_Cessationceplane.csv
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"Scenario","Agents","PropAgents","Cost","CostpAgent","CostpAgentExcluded","CostpAgentAll","QALY","QALYpAgent","QALYpAgentExcluded","QALYpAgentAll","IncrementalCosts","IncrementalQALY","ICERAdj","ICER","INMB"
"S1NoCDAvg",37198402,1,79611221702.1073,2140.17854052191,0,2140.17854052191,466612084.315661,12.5438744469631,0,12.5438744469631,0,0,NA,NA,0
"S1a",37192142,1,90029166180.6185,2420.6502056434,0,2420.6502056434,467067251.851173,12.5582240423575,0,12.5582240423575,280.471665121491,0.0143495953943766,19545.6148701867,18424.9596168519,437.008104597335
"S1b",37187925,1,87358830750.2865,2349.1181815142,0,2349.1181815142,466782406.198794,12.5519884800992,0,12.5519884800992,208.939640992292,0.00811403313612935,25750.4051914635,23225.5913763347,196.762015814078
"S1c",37195823,1,88369606438.0401,2375.79382066745,0,2375.79382066745,466792527.490138,12.5495953534927,0,12.5495953534927,235.615280145537,0.00572090652963908,41184.9553781123,35616.3831043441,50.4300463363761
"S2NoCD",22078475,0.593532888859043,58623262797.6865,2655.22246430908,1388.09922193545,2140.17854052191,270860548.807215,12.268082320324,12.9465926329172,12.5438744469631,0,0,NA,NA,0
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"S3NoCD",17251004,0.463756588253442,49706422473.1814,2881.36403383718,1499.18296255611,2140.17854052191,193732612.293423,11.2302224434834,13.6799532461446,12.5438744469631,0,0,NA,NA,1.16415321826935e-10
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"S3c",17252836,0.463805837680877,53445425795.8674,3097.77626100818,1499.18296255611,2240.61986645571,193919004.9689,11.2398335536778,13.6799532461446,12.5482114881384,100.441325933803,0.00433704117531697,23158.9514310899,22516.881275472,116.410732832272
"S3d",17252575,0.46379882125044,53805052917.5154,3118.66796217466,1499.18296255611,2250.29819641196,193882222.110877,11.2378715705266,13.6799532461446,12.5473186435957,110.119655890053,0.00344419663255913,31972.5229532646,31023.6615236639,62.0901757380925
"S1NoCDAvg",74395846,1,159200698334.965,2139.91382536226,0,2139.91382536226,933196560.713127,12.5436649646401,0,12.5436649646401,0,0,NA,NA,0
"S1a",74394771,1,180319782952.753,2423.82334845486,0,2423.82334845486,934242430.529448,12.5579045136042,0,12.5579045136042,283.9095230926,0.0142395489640812,19938.0980260508,19674.8879668881,428.067925111391
"S1b",74384118,1,174899343545.033,2351.29955490005,0,2351.29955490005,933542719.911734,12.5502962865236,0,12.5502962865236,211.385729537788,0.00663132188351767,31876.8615444823,30896.9670850523,120.180364638101
"S1c",74390209,1,176728465905.913,2375.69524647945,0,2375.69524647945,933496178.014765,12.5486430346602,0,12.5486430346602,235.781421117188,0.00497807002009409,47364.0226363732,45347.3564636064,13.1220798874274
"S2NoCD",44166055,0.593662917684947,117144112005.875,2652.35624974599,1391.22980800924,2139.91381098032,541887055.653208,12.2693108010939,12.9444991882319,12.5436648803366,0,0,NA,NA,-0.00420079461764544
"S2a",44161595,0.593602968101203,127021423439.75,2876.28704171011,1391.22980800924,2272.76418973424,542294219.918781,12.2797697845556,12.9444991882319,12.5499138412255,132.850378753921,0.00624896088892868,21259.595173542,21410.3782441873,179.593464897829
"S3NoCD",34500349,0.463740260444111,99418734053.99,2881.67328550763,1498.46395649551,2139.91381098032,387394494.859054,11.2287123489404,13.680793746073,12.5436648803366,0,0,NA,NA,-0.00420079461764544
"S3a",34498365,0.463713592288473,105579216551.398,3060.41218334255,1498.46395649551,2222.76057973536,387503366.075873,11.2325139488748,13.680793746073,12.5454931263869,82.8467687550437,0.00182824605033716,45314.8900498188,47016.756345148,8.56133296713233
"S3b",34505121,0.463804403810396,109490006078.717,3173.15235841998,1498.46395649551,2275.19181231827,387996999.196217,11.2446207389395,13.680793746073,12.5508859769205,135.278001337954,0.00722109658389769,18733.7199781555,18322.3489573076,225.772627062281
"S3c",34505668,0.463811756371451,107022937523.222,3101.60456894277,1498.46395649551,2242.01941966508,387810722.961726,11.23904405971,13.680793746073,12.5482815354215,102.105608684763,0.004616655084968,22116.7938270335,21287.015126507,128.722944768961
"S3d",34507875,0.463841422006277,107608997576.599,3118.38957271635,1498.46395649551,2249.85255786778,387745307.909577,11.2364295949715,13.680793746073,12.5469964023249,109.938746887462,0.00333152198833631,32999.5561405144,30673.6737762919,56.6331517347135
22 changes: 11 additions & 11 deletions reproduction/outputs/Sen1_No_Smoking_Cessationceplane_5y.csv
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"Scenario","Agents","PropAgents","Cost","CostpAgent","CostpAgentExcluded","CostpAgentAll","QALY","QALYpAgent","QALYpAgentExcluded","QALYpAgentAll","IncrementalCosts","IncrementalQALY","ICERAdj","ICER","INMB"
"S1NoCDAvg",37198402,1,79611221702.1073,2140.17854052191,0,2140.17854052191,466612084.315661,12.5438744469631,0,12.5438744469631,0,0,NA,NA,0
"S1a",37195208,1,87015658430.0403,2339.43196204307,0,2339.43196204307,466968791.714576,12.5545417494258,0,12.5545417494258,199.253421521165,0.0106673024627,18678.8948956766,20352.8249394169,334.111701613874
"S1b",37197852,1,85019682450.6848,2285.60731008567,0,2285.60731008567,466815724.569652,12.5495344346672,0,12.5495344346672,145.428769563759,0.00565998770405685,25694.1847169601,30493.8034325589,137.570615638979
"S1c",37186225,1,85476215420.646,2298.5988876431,0,2298.5988876431,466624752.222822,12.5483227249559,0,12.5483227249559,158.420347121191,0.00444827799278613,35613.8594256259,44640.360839816,63.9935525180772
"S2NoCD",22087417,0.593773275529417,58618311506.2402,2653.92334043588,1389.24829823251,2140.17854052191,271012140.254789,12.2699788868381,12.9442219723514,12.5438744469631,0,0,NA,NA,0
"S2a",22083208,0.593660125507542,62093405680.7366,2811.79281926505,1389.24829823251,2233.75625712876,271120515.09004,12.2772250793472,12.9442219723514,12.5482525131374,93.5777166068483,0.00437806617427938,21374.2124677343,21786.5421917709,125.325592107023
"S3NoCD",17252656,0.463800998763334,49824346254.2723,2887.923242327,1493.39490474986,2140.17854052191,193730581.266238,11.2290293892278,13.6811881114611,12.5438744469631,0,0,NA,NA,0
"S3a",17243481,0.46355434838303,51742662652.5135,3000.70865346234,1493.39490474986,2192.11674734306,193656912.259667,11.2307319073026,13.6811881114611,12.5452684825013,51.9382068211494,0.00139403553818163,37257.4481773236,66246.2342129985,17.7635700878454
"S3b",17247748,0.463669057611668,53304765552.954,3090.53480796183,1493.39490474986,2233.93925854614,193842442.780176,11.2387102814916,13.6811881114611,12.5486867178018,93.7607180242344,0.00481227083865576,19483.674374908,20929.0177097903,146.852823908557
"S3c",17255289,0.463871781373834,52372898312.0746,3035.17943466925,1493.39490474986,2208.58524113819,193880135.434407,11.2359830910051,13.6811881114611,12.546926502798,68.40670061628,0.00305205583487123,22413.3188635346,21176.66202229,84.1960911272326
"S3d",17249786,0.463723844911402,52605759305.2856,3049.64706839178,1493.39490474986,2215.06614172558,193811770.80811,11.2356043610112,13.6811881114611,12.5471126116496,74.8876012036731,0.00323816468655025,23126.5573102935,24596.8851871209,87.0206331236986
"S1NoCDAvg",74395846,1,159200698334.965,2139.91382536226,0,2139.91382536226,933196560.713127,12.5436649646401,0,12.5436649646401,0,0,NA,NA,0
"S1a",74386358,1,174028848972.41,2339.52640849025,0,2339.52640849025,933898758.48662,12.5547047011849,0,12.5547047011849,199.612583127985,0.0110397365447703,18081.2814072583,18392.327010137,352.374244110542
"S1b",74391545,1,169947664016.912,2284.50241243023,0,2284.50241243023,933536456.1998,12.5489591081863,0,12.5489591081863,144.588587067969,0.00529414354620172,27311.0439500084,28424.0238846907,120.118590242113
"S1c",74393824,1,171127045500.989,2300.28564603681,0,2300.28564603681,933458732.305095,12.5475299173369,0,12.5475299173369,160.371820674552,0.00386495269680687,41493.8637689012,44006.436191652,32.8758141656872
"S2NoCD",44157584,0.593549053800665,117261957082.6,2655.53380553157,1386.94284917449,2139.91381098032,541767606.755468,12.268959433004,12.944823150142,12.5436648803366,0,0,NA,NA,-0.00420079461764544
"S2a",44167644,0.593684276404357,124138133750.894,2810.61253235274,1386.94284917449,2232.15315487099,542293812.182945,12.2780787714859,12.944823150142,12.5489874961528,92.2393438906761,0.00532261581629356,17329.7016118115,17005.4798525458,173.887246129336
"S3NoCD",34503305,0.463779993845355,99600427723.9674,2886.69238277224,1494.02041376601,2139.91381098032,387416790.773151,11.2283965484799,13.6812485807805,12.5436648803366,0,0,NA,NA,-0.00420079461764544
"S3a",34502959,0.463775343048051,103657451678.375,3004.3061430869,1494.02041376601,2194.45369598238,387588699.796419,11.2334915911537,13.6812485807805,12.546039243218,54.5398850020615,0.00237436288146498,22970.3241352942,23083.9598108719,64.1740582765779
"S3b",34499019,0.463722383101874,106572608911.429,3089.14896714682,1494.02041376601,2233.7172278936,387784278.062257,11.2404436213754,13.6812485807805,12.5493926883182,93.8034169132857,0.00572780798169248,16376.8438490091,16805.4585651054,192.582781376666
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"S3d",34499680,0.46373126800655,104999032656.045,3043.47845127968,1494.02041376601,2212.55255422516,387583597.491654,11.2344113769071,13.6812485807805,12.5465736616227,72.6387432448455,0.00290878128610395,24972.2258568772,26066.5903286192,72.7961202656152
22 changes: 11 additions & 11 deletions reproduction/outputs/Sen1_No_Smoking_Cessationclinicalresults.csv
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@@ -1,12 +1,12 @@
"Scenario","PropAgents","ProppPatientYears","ProppCopdPYs","SABAAll","LAMAAll","LAMALABAAll","ICSLAMALABAAll","MildpAgentAll","ModeratepAgentAll","SeverepAgentAll","VerySeverepAgentAll","NoCOPDpPYAll","GOLD1pPYAll","GOLD2pPYAll","GOLD3pPYAll","GOLD4pPYAll","DiagnosedpPYAll"
"S1NoCDAvg",1,1,1,0.0190548174246026,0.135446802262772,0.151331601806446,0.0796706179684278,0.414576424546409,0.0774587978268529,0.130292895377603,0.0112390715063513,0.842525131960795,0.0461019085701448,0.0491003989994473,0.0110213130086141,0.00191229417435485,0.186194060423021
"S1a",1,1,1,0.0264454468360299,0.158359380406053,0.309086725751088,0.0938684682886393,0.401373440658513,0.0753646025550236,0.127161995671021,0.0110095568036926,0.842443868497273,0.0460517274286689,0.0491607809226874,0.0110686165279358,0.00192954195101687,0.464376476791797
"S1b",1,1,1,0.0216383548237469,0.147534380773731,0.240228427710615,0.0873070792232327,0.406993963766465,0.0763274369301326,0.128610778902023,0.0111314626992498,0.842425567890996,0.0460984402418726,0.0491518214404969,0.0110580698929056,0.00192427062852478,0.333999629803126
"S1c",1,1,1,0.0201783233063182,0.143831911608648,0.214122624693358,0.084992318136224,0.409279154812625,0.0768345682255774,0.129130951074802,0.0111616296270686,0.842424672770761,0.0460713602497146,0.0491646248526053,0.0110728391960319,0.00192519468853352,0.288509307771604
"S2NoCD",0.593532888859043,0.58224202899343,0.705569444449141,0.0190548174246026,0.135446802262772,0.151331601806446,0.0796706179684278,0.414576424546409,0.0774587978268529,0.130292895377602,0.0112390715063513,0.842525131960795,0.0461019085701448,0.0491003989994473,0.0110213130086141,0.00191229417435485,0.186194060423021
"S2a",0.593475762749163,0.582305124658785,0.705458838857616,0.0223999719282123,0.146108740417515,0.228424810190541,0.08657134879005,0.40740515210631,0.0764552066117195,0.128757466723239,0.0111115672885393,0.842542734688797,0.0460897134449722,0.0490808910111249,0.0110346695973592,0.00191137123114457,0.309928927161259
"S3NoCD",0.463756588253442,0.415526544326985,0.586756562487125,0.0190548174246026,0.135446802262772,0.151331601806446,0.0796706179684278,0.414576424546409,0.0774587978268529,0.130292895377603,0.0112390715063513,0.842525131960795,0.0461019085701448,0.0491003989994473,0.0110213130086141,0.00191229417435485,0.186194060423021
"S3a",0.463706317276748,0.415379456864573,0.586978692022244,0.0201724891280893,0.139182669649564,0.18061459420176,0.0822113440667067,0.411828268680443,0.0772011779928308,0.129862823715872,0.0112297370967753,0.842487355323,0.0461145795875551,0.0491019204489365,0.0110298057657046,0.00192270579825817,0.231159293307654
"S3b",0.46373548519638,0.415533872887848,0.587106834359327,0.0227387434685853,0.146521606832711,0.232958003609601,0.0870327131350745,0.407378133180258,0.076521014511238,0.12881243857292,0.0111091251255703,0.842489237050869,0.0460946396218897,0.0491013087511228,0.0110452971937639,0.00192941238085603,0.317770312040096
"S3c",0.463805837680877,0.415603403927939,0.586851957778309,0.0213772593756792,0.142918398689647,0.207204102734025,0.0846795014422536,0.409469478185061,0.0768155464661331,0.129312918698576,0.0111385167932226,0.842522590482225,0.0460943278748357,0.0490880469817344,0.0110316735115724,0.00192444712768483,0.274038001486602
"S3d",0.46379882125044,0.415599078609114,0.587245606487595,0.0208136426086128,0.141185505125505,0.195300913100731,0.0836057621083008,0.410339860540738,0.0769590190480498,0.129608354246181,0.0111651862765627,0.842477393233695,0.0461184308556459,0.0491177741790075,0.0110249850806031,0.00192229559549136,0.254508030689352
"S1NoCDAvg",1,1,1,0.0190473049074471,0.135283634050003,0.151140951480401,0.0795532286181811,0.414823859923577,0.0774716104444864,0.130259994623893,0.0112362590782286,0.842485491998997,0.0461135275232879,0.0491143834985112,0.0110301791002256,0.00191571908774902,0.186025490152701
"S1a",1,1,1,0.0264236332734017,0.158508229366565,0.309599367787139,0.0937869497099445,0.402103206957919,0.0755534686705333,0.127419761800194,0.0110160564913897,0.842377516199942,0.0460989459861558,0.0491853154956286,0.0110685937112575,0.00192971361751565,0.464468309708502
"S1b",1,1,1,0.0216557132041627,0.147709336891779,0.240339282715445,0.087535649098251,0.407298531119237,0.0763675385651545,0.128812268769524,0.011117090882223,0.842378827202628,0.046121162421782,0.0491562814893104,0.011069455811699,0.00193066896562442,0.334071604580599
"S1c",1,1,1,0.0201668879758684,0.143921880619591,0.214150086536029,0.0851948404551918,0.409107910961777,0.076676313679936,0.129220002594696,0.0111515212976482,0.84250560481954,0.046031751332229,0.0491385157411519,0.0110559053230559,0.00192451023591186,0.288333183331823
"S2NoCD",0.593662917684947,0.58241822916295,0.705150952047846,0.0190473049074471,0.135283634050003,0.151140951480401,0.0795532286181811,0.414823859923577,0.0774716104444864,0.130259994623893,0.0112362590782286,0.842485491998997,0.0461135275232879,0.0491143834985112,0.0110301791002256,0.00191571908774902,0.186025490152701
"S2a",0.593602968101203,0.58241402548022,0.705342728682376,0.0224079836515832,0.146109445458714,0.228525350394662,0.0866425414774965,0.407684645652499,0.0764996395734143,0.128891003892322,0.0111278073533347,0.842462613258148,0.0460507065600692,0.0491680235785348,0.0110538810781277,0.00192251639219235,0.310008382503835
"S3NoCD",0.463740260444111,0.415451055390394,0.586152959630864,0.0190473049074471,0.135283634050003,0.151140951480401,0.0795532286181811,0.414823859923577,0.0774716104444864,0.130259994623893,0.0112362590782286,0.842485491998997,0.0461135275232879,0.0491143834985112,0.0110301791002256,0.00191571908774902,0.186025490152701
"S3a",0.463713592288473,0.415410520903306,0.586730765038499,0.0201579517312019,0.139026502119212,0.180388692225143,0.0821315148935111,0.412165641966074,0.0771194642091519,0.129809674672672,0.011207731686269,0.842419878208727,0.0461140947417048,0.0491531978313321,0.0110467384714033,0.00192529186214027,0.230912090044021
"S3b",0.463804403810396,0.415635446836524,0.587096964653946,0.0227315602197262,0.14623407205971,0.232462301392697,0.0869038618868361,0.408055629179509,0.0763702662446643,0.128678816248485,0.0111235684382867,0.842398812891398,0.0461084418706195,0.049154421812074,0.0110670769913818,0.00193118868859615,0.317545206686976
"S3c",0.463811756371451,0.415586303111819,0.587102454197951,0.0213684596521233,0.142645328340196,0.206868014690635,0.0845366934160244,0.409850512737668,0.0767430133340044,0.129314313487351,0.0111695612856069,0.842396604947955,0.0461341055318016,0.049153499488423,0.0110503875417815,0.00192691821755138,0.273852461306965
"S3d",0.463841422006277,0.415577489268392,0.586488320897399,0.0207966965779384,0.141058016136999,0.195070284382104,0.0834918590243405,0.411007003855059,0.076889275897912,0.129526606179602,0.0111702139696136,0.842460541163522,0.0461084531134985,0.049121919701292,0.0110474023654893,0.00192191304695143,0.254325727448637
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