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def __init__(self, sao: npt.NDArray[np.int_], px: npt.NDArray[np.float_], py: npt.NDArray[np.float_], + def __init__(self, sao: npt.NDArray[np.int_], alt: npt.NDArray[np.float_], az: npt.NDArray[np.float_], px: npt.NDArray[np.float_], py: npt.NDArray[np.float_], v_mag: npt.NDArray[np.float_]) -> None: self.sao = sao + self.alt = alt + self.az = az self.px = px self.py = py self.v_mag = v_mag def _filter(self, condition: npt.NDArray[np.bool_]) -> None: self.sao = self.sao[condition] + self.alt = self.alt[condition] + self.az = self.az[condition] self.px = self.px[condition] self.py = self.py[condition] self.v_mag = self.v_mag[condition] @@ -48,6 +52,7 @@ def from_altaz_catalog(cls, altaz_catalog: AltAzCatalog, model: WorldModel) -> P return PixelCatalog( altaz_catalog.sao, + altaz_catalog.alt, altaz_catalog.az, cast(npt.NDArray[np.float_], px), cast(npt.NDArray[np.float_], py), altaz_catalog.v_mag ) diff --git a/pyobs_cloudcover/pipeline/night/cloud_map_generator/cloud_map_generator.py b/pyobs_cloudcover/pipeline/night/cloud_map_generator/cloud_map_generator.py index 758cd31..5eb0d80 100644 --- a/pyobs_cloudcover/pipeline/night/cloud_map_generator/cloud_map_generator.py +++ b/pyobs_cloudcover/pipeline/night/cloud_map_generator/cloud_map_generator.py @@ -1,8 +1,8 @@ -from typing import List +from typing import List, Optional import numpy as np import numpy.typing as npt -from cloudmap_rs import Entry, gen_cloud_map, Average +from cloudmap_rs import Entry, Average, MagnitudeMapGenerator, AltAzCoord from pyobs_cloudcover.pipeline.night.catalog.pixel_catalog import PixelCatalog @@ -11,16 +11,24 @@ class CloudMapGenerator(object): def __init__(self, radius: float): self._radius = radius - def __call__(self, catalog: PixelCatalog, matches: List[bool], height: int, width: int) -> npt.NDArray[np.float_]: - std_entries = [Entry(*entry, True) for entry in zip(catalog.sao, catalog.px, catalog.py, catalog.v_mag)] - av_std_vis_map = gen_cloud_map(std_entries, self._radius, width, height) + def __call__(self, catalog: PixelCatalog, matches: List[bool], alt_az_image_list: List[List[Optional[AltAzCoord]]]) -> npt.NDArray[np.float_]: + star_coords = [AltAzCoord(np.deg2rad(alt), np.deg2rad(az)) for alt, az in zip(catalog.alt, catalog.az)] + + map_generator = MagnitudeMapGenerator(star_coords, alt_az_image_list, np.deg2rad(self._radius)) + + std_entries = [Entry(v_mag, True) for v_mag in catalog.v_mag] + av_std_vis_map = map_generator.gen_cloud_map(std_entries) std_vis_map = self._convert_average_to_value(av_std_vis_map) - match_entries = [Entry(*entry) for entry in zip(catalog.sao, catalog.px, catalog.py, catalog.v_mag, matches)] - av_vis_map = gen_cloud_map(match_entries, self._radius, width, height) + no_entries = [Entry(v_mag, False) for v_mag in catalog.v_mag] + av_no_vis_map = map_generator.gen_cloud_map(no_entries) + no_vis_map = self._convert_average_to_value(av_no_vis_map) + + match_entries = [Entry(v_mag, found) for v_mag, found in zip(catalog.v_mag, matches)] + av_vis_map = map_generator.gen_cloud_map(match_entries) vis_map = self._convert_average_to_value(av_vis_map) - return std_vis_map - vis_map + return (std_vis_map - vis_map) / (std_vis_map - no_vis_map) @staticmethod def _convert_average_to_value(average_map: List[List[Average]]) -> npt.NDArray[np.float_]: diff --git a/pyobs_cloudcover/pipeline/night/pipeline.py b/pyobs_cloudcover/pipeline/night/pipeline.py index 2f03b71..c1c2f1e 100644 --- a/pyobs_cloudcover/pipeline/night/pipeline.py +++ b/pyobs_cloudcover/pipeline/night/pipeline.py @@ -4,6 +4,7 @@ import numpy.typing as npt from pyobs_cloudcover.cloud_coverage_info import CloudCoverageInfo +from pyobs_cloudcover.pipeline.night.altaz_map_generator.altaz_map_generator import AltAzMapGenerator from pyobs_cloudcover.pipeline.night.catalog.catalog_constructor import CatalogConstructor from pyobs_cloudcover.pipeline.night.cloud_coverage_calculator.coverage_info_calculator import CoverageInfoCalculator from pyobs_cloudcover.pipeline.night.cloud_map_generator.cloud_map_generator import CloudMapGenerator @@ -16,6 +17,7 @@ class NightPipeline(Pipeline): def __init__(self, preprocess: Preprocessor, catalog_constructor: CatalogConstructor, + alt_az_list_generator: AltAzMapGenerator, star_reverse_matcher: StarReverseMatcher, cloud_map_generator: CloudMapGenerator, coverage_info_calculator: CoverageInfoCalculator) -> None: @@ -23,6 +25,7 @@ def __init__(self, self._preprocess = preprocess self._catalog_constructor = catalog_constructor self._star_reverse_matcher = star_reverse_matcher + self._alt_az_list_generator = alt_az_list_generator self._cloud_map_generator = cloud_map_generator self._coverage_info_calculator = coverage_info_calculator @@ -33,5 +36,7 @@ def __call__(self, image: npt.NDArray[np.float_], obs_time: datetime.datetime) - catalog = self._catalog_constructor(obs_time, img_height, img_width) matches = self._star_reverse_matcher(preprocessed_image, catalog) - cloud_map = self._cloud_map_generator(catalog, matches, img_height, img_width) + alt_az_list = self._alt_az_list_generator(img_height, img_width) + + cloud_map = self._cloud_map_generator(catalog, matches, alt_az_list) return self._coverage_info_calculator(cloud_map, obs_time) diff --git a/pyobs_cloudcover/pipeline/night/pipeline_factory.py b/pyobs_cloudcover/pipeline/night/pipeline_factory.py index 3618694..a17693d 100644 --- a/pyobs_cloudcover/pipeline/night/pipeline_factory.py +++ b/pyobs_cloudcover/pipeline/night/pipeline_factory.py @@ -1,5 +1,6 @@ from astroplan import Observer +from pyobs_cloudcover.pipeline.night.altaz_map_generator.altaz_map_generator_factory import AltAzMapGeneratorFactory from pyobs_cloudcover.pipeline.night.catalog.catalog_constructor_factory import CatalogConstructorFactory from pyobs_cloudcover.pipeline.night.cloud_coverage_calculator.cloud_info_calculator_factory import \ CloudInfoCalculatorFactory @@ -19,12 +20,14 @@ def __init__(self, observer: Observer, model: WorldModel): def __call__(self, options: NightPipelineOptions) -> NightPipeline: preprocessor_factory = PreprocessorFactory(options.preprocessor_options) catalog_constructor_factory = CatalogConstructorFactory(options.catalog_options, self._model, self._observer) + altaz_map_generator_factory = AltAzMapGeneratorFactory(options.catalog_options, self._model) reverse_matcher_factory = StarReverseMatcherFactory(options.star_matcher_options) cloud_map_generator_factory = CloudMapGeneratorFactory(options.cloud_generator_options) coverage_info_calculator_factory = CloudInfoCalculatorFactory(options.coverage_info_options, self._model) preprocessor = preprocessor_factory() catalog_constructor = catalog_constructor_factory() + altaz_map_generator = altaz_map_generator_factory() star_reverse_matcher = reverse_matcher_factory() cloud_map_generator = cloud_map_generator_factory() coverage_info_calculator = coverage_info_calculator_factory() @@ -32,6 +35,7 @@ def __call__(self, options: NightPipelineOptions) -> NightPipeline: pipeline = NightPipeline( preprocessor, catalog_constructor, + altaz_map_generator, star_reverse_matcher, cloud_map_generator, coverage_info_calculator diff --git a/pyobs_cloudcover/world_model/hour_angle_converter.py b/pyobs_cloudcover/world_model/hour_angle_converter.py new file mode 100644 index 0000000..3104f1e --- /dev/null +++ b/pyobs_cloudcover/world_model/hour_angle_converter.py @@ -0,0 +1,15 @@ +import datetime + +from astroplan import Observer +from astropy.coordinates import Angle + + +class HourAngleConverter(object): + def __init__(self, observer: Observer): + self._observer = observer + + def __call__(self, ra: Angle, obs_time: datetime.datetime) -> float: + lst = self._observer.local_sidereal_time(obs_time) + self._lst = Angle(lst, unit="hourangle") + + return float((self._lst - ra).rad) \ No newline at end of file diff --git a/pyobs_cloudcover/world_model/wcs_model.py b/pyobs_cloudcover/world_model/wcs_model.py new file mode 100644 index 0000000..2de200f --- /dev/null +++ b/pyobs_cloudcover/world_model/wcs_model.py @@ -0,0 +1,45 @@ +import datetime +from typing import Union, Tuple + +import numpy as np +from astroplan import Observer +from astropy.coordinates import Angle, SkyCoord +from astropy.wcs import WCS +from numpy import typing as npt + +from pyobs_cloudcover.world_model import WorldModel +from pyobs_cloudcover.world_model.hour_angle_converter import HourAngleConverter + +from astropy import units as u + + +class WCSModel(WorldModel): + def __init__(self, wcs: WCS, observer: Observer, config_obs_time: datetime.datetime) -> None: + self._wcs = wcs + self._observer = observer + self._config_obs_time = config_obs_time + + self._ha_conv = HourAngleConverter(observer) + + def pix_to_altaz(self, x: Union[npt.NDArray[np.float_], float], y: Union[npt.NDArray[np.float_], float]) -> \ + Union[Tuple[npt.NDArray[np.float_], npt.NDArray[np.float_]], Tuple[float, float]]: + + coord = self._wcs.pixel_to_world(x, y) + ha = self._ha_conv(Angle(coord.ra.deg, unit="deg"), self._config_obs_time) + + coord = SkyCoord(ra=ha * u.rad, dec=coord.dec, location=self._observer.location, obstime=self._config_obs_time) + coord = coord.transform_to("altaz") + return coord.alt.rad, coord.az.rad + + def altaz_to_pix(self, alt: Union[npt.NDArray[np.float_], float], az: Union[npt.NDArray[np.float_], float]) -> \ + Union[Tuple[npt.NDArray[np.float_], npt.NDArray[np.float_]], Tuple[float, float]]: + + coord = SkyCoord(alt=alt * u.rad, az=az * u.rad, frame="altaz", + location=self._observer.location, obstime=self._config_obs_time) + coord = coord.transform_to(frame="icrs") + ha = self._ha_conv(Angle(coord.ra.deg, unit="deg"), self._config_obs_time) + + coord = SkyCoord(ra=ha * u.rad, dec=coord.dec, location=self._observer.location, obstime=self._config_obs_time) + + pixel = self._wcs.world_to_pixel(coord) + return pixel[0], pixel[1] diff --git a/pyobs_cloudcover/world_model/wcs_model_loader.py b/pyobs_cloudcover/world_model/wcs_model_loader.py new file mode 100644 index 0000000..0cfc1b8 --- /dev/null +++ b/pyobs_cloudcover/world_model/wcs_model_loader.py @@ -0,0 +1,28 @@ +import datetime + +from astroplan import Observer +from astropy.wcs import WCS +from pyobs.images import Image + +from astropy import units as u +from pyobs_cloudcover.world_model.wcs_model import WCSModel + + +class WCSModelLoader(object): + def __init__(self, file_path: str) -> None: + self._file_path = file_path + + def __call__(self) -> WCSModel: + wcs_image = Image.from_file(self._file_path) + + wcs = WCS(header=wcs_image.header) + config_obs_time = datetime.datetime.fromisoformat(wcs_image.header["DATE-OBS"]) + + observer = Observer( + latitude=wcs_image.header["LATITUDE"] * u.deg, + longitude=wcs_image.header["LONGITUD"] * u.deg, + elevation=wcs_image.header["HEIGHT"] * u.m, + ) + + return WCSModel(wcs=wcs, observer=observer, config_obs_time=config_obs_time) + diff --git a/pyproject.toml b/pyproject.toml index 550755a..ebb0b93 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -8,8 +8,8 @@ packages = [{include = "pyobs_cloudcover"}] [tool.poetry.dependencies] python = ">=3.11,<3.12" -pyobs-core = {version = ">=1.13.0", extras = ["full"]} -influxdb-client = "^1.42.0" +#pyobs-core = {version = ">=1.13.0", extras = ["full"]} +#influxdb-client = "^1.42.0" [tool.poetry.group.dev.dependencies] pytest = "^7.4.0" diff --git a/src/alt_az_coord.rs b/src/alt_az_coord.rs index ab7ab3b..00158d8 100644 --- a/src/alt_az_coord.rs +++ b/src/alt_az_coord.rs @@ -129,6 +129,16 @@ mod tests assert!(to.distance(&from) - PI/2.0 < 1e-10); } + #[test] + fn test_distance_alt_eq() + { + let from = AltAzCoord::new(PI/2.0, 0.0); + let to1 = AltAzCoord::new(PI/4.0, 0.0); + let to2 = AltAzCoord::new(PI/4.0, PI); + + assert!(from.distance(&to2) - from.distance(&to1) < 1e-10); + } + #[test] fn test_distance_az() { diff --git a/src/average.rs b/src/average.rs index 1f5bd6d..5fffb91 100644 --- a/src/average.rs +++ b/src/average.rs @@ -1,6 +1,7 @@ use pyo3::prelude::*; #[pyclass] +#[derive(Debug)] pub struct Average { #[pyo3(get)] @@ -30,16 +31,16 @@ impl Average pub fn calc_weighted(values: &Vec, weights: &Vec) -> Option { - let average = Self::calc(values)?; let norm: f64 = weights.iter().fold(0.0, |acc, x| acc + x); let sum: f64 = values.iter().zip(weights).fold(0.0, |acc, (x, w)| acc + x * w); let weighted_average: f64 = sum/norm; - let weighted_std: f64 = average.get_std() * weights.iter().fold(0.0, |acc, x| acc + x.powf(2.0)).sqrt(); + let weighted_std: f64 = values.iter().zip(weights).map(|(x, w)| (weighted_average - x).powi(2)/w.powi(2)).sum(); + let std: f64 = (weighted_std/((values.len() as f64 - 1.0) * weights.iter().map(|x| 1.0/x.powi(2)).sum::())).sqrt(); - Some(Average {value: weighted_average, std: weighted_std}) + Some(Average {value: weighted_average, std}) } pub fn get_value(&self) -> f64 @@ -53,6 +54,13 @@ impl Average } } +impl PartialEq for Average +{ + fn eq(&self, other: &Self) -> bool { + self.value == other.value && self.std == other.std + } +} + #[cfg(test)] mod tests { diff --git a/src/cloud_map_generator.rs b/src/cloud_map_generator.rs index 32210e1..8b5231a 100644 --- a/src/cloud_map_generator.rs +++ b/src/cloud_map_generator.rs @@ -9,17 +9,17 @@ use crate::star_counter::StarCounter; use crate::weighted_value::WeightedValue; #[pyclass] -pub struct CloudMapGenerator +pub struct MagnitudeMapGenerator { neighbours: Vec>>>, length: usize, } #[pymethods] -impl CloudMapGenerator +impl MagnitudeMapGenerator { #[new] - pub fn new(alt_az_coords: Vec, image_alt_az_coords: Vec>>, distance: f64) -> CloudMapGenerator + pub fn new(alt_az_coords: Vec, image_alt_az_coords: Vec>>, distance: f64) -> MagnitudeMapGenerator { let length = alt_az_coords.len(); let indexes: Vec = (0..length).collect(); @@ -33,7 +33,7 @@ impl CloudMapGenerator ).collect() ).collect(); - CloudMapGenerator {neighbours, length} + MagnitudeMapGenerator {neighbours, length} } pub fn gen_cloud_map(&self, stars: Vec) -> Vec>> @@ -87,4 +87,31 @@ fn calc_visibility(stars: &Vec, neighbours: &Option>) - } star_counter.calc_v_mag_border_value() +} + + +#[cfg(test)] +mod tests +{ + use std::f64::consts::PI; + use super::*; + + + #[test] + fn test_gen_cloud_map() + { + let alt_az_list: Vec>> = vec![ + vec![Some(AltAzCoord::new(PI/2.0, 0.0))] + ]; + + let alt_az_coords: Vec = vec![AltAzCoord::new(PI/4.0, 0.0), AltAzCoord::new(PI/4.0, PI)]; + + let generator = MagnitudeMapGenerator::new(alt_az_coords, alt_az_list, PI/2.0); + + let stars: Vec = vec![Entry::new(1.0, false), Entry::new(0.0, true)]; + + let expected: Vec>> = vec![vec![Average::calc_weighted(&vec![0.0, 1.0], &vec![1.0, 1.0])]]; + + assert_eq!(generator.gen_cloud_map(stars), expected); + } } \ No newline at end of file diff --git a/src/entry.rs b/src/entry.rs index ae9ba57..069bb5d 100644 --- a/src/entry.rs +++ b/src/entry.rs @@ -6,13 +6,7 @@ use pyo3::prelude::*; pub struct Entry { #[pyo3(get, set)] - SAO: u64, - #[pyo3(get, set)] - CAT_PX: f64, - #[pyo3(get, set)] - CAT_PY: f64, - #[pyo3(get, set)] - Vmag: f64, + v_mag: f64, #[pyo3(get, set)] found: bool @@ -21,26 +15,16 @@ pub struct Entry impl Entry { #[new] - pub fn new(sao: u64, px: f64, py: f64, v_mag: f64, found: bool) -> Self { - Entry {SAO: sao, CAT_PX: px, CAT_PY: py, Vmag: v_mag, found } + pub fn new(v_mag: f64, found: bool) -> Self { + Entry {v_mag, found } } } impl Entry { - pub fn get_px(&self) -> f64 - { - self.CAT_PX - } - - pub fn get_py(&self) -> f64 - { - self.CAT_PY - } - pub fn get_v_mag(&self) -> f64 { - self.Vmag + self.v_mag } pub fn get_found(&self) -> bool diff --git a/src/lib.rs b/src/lib.rs index bc82067..ee3319b 100644 --- a/src/lib.rs +++ b/src/lib.rs @@ -9,18 +9,18 @@ use pyo3::impl_::wrap::OkWrap; use pyo3::prelude::*; use crate::alt_az_coord::AltAzCoord; use crate::average::Average; -use crate::cloud_map_generator::CloudMapGenerator; +use crate::cloud_map_generator::MagnitudeMapGenerator; use crate::entry::Entry; #[pymodule] -fn allsky_rs(_py: Python<'_>, m: &PyModule) -> PyResult<()> { +fn cloudmap_rs(_py: Python<'_>, m: &PyModule) -> PyResult<()> { m.add_class::()?; m.add_class::()?; m.add_class::()?; - m.add_class::()?; + m.add_class::()?; Ok(()) } diff --git a/tests/integration/test_night_pipeline.py b/tests/integration/test_night_pipeline.py index e4f73b3..4bad2bf 100644 --- a/tests/integration/test_night_pipeline.py +++ b/tests/integration/test_night_pipeline.py @@ -5,6 +5,7 @@ import astropy.units as u +from pyobs_cloudcover.pipeline.night.altaz_map_generator.altaz_map_generator import AltAzMapGenerator from pyobs_cloudcover.pipeline.night.catalog.altaz_catalog_loader import AltAzCatalogLoader from pyobs_cloudcover.pipeline.night.catalog.catalog_constructor import CatalogConstructor from pyobs_cloudcover.pipeline.night.cloud_coverage_calculator.coverage_calculator import CoverageCalculator @@ -47,6 +48,8 @@ def test_night_pipeline() -> None: altaz_catalog_loader = AltAzCatalogLoader.from_csv("tests/integration/catalog.csv") catalog_constructor = CatalogConstructor(altaz_catalog_loader, model, observer, 0.0, 3.0, 0.0) + altaz_list_generator = AltAzMapGenerator(model, 0.0) + reverse_matcher = StarReverseMatcher(SigmaThresholdDetector(3.0), ImageWindow(6.0)) cloud_map_gem = CloudMapGenerator(50.0) @@ -56,6 +59,6 @@ def test_night_pipeline() -> None: zenith_masker = ZenithMasker(80, model) cloud_coverage_info_calculator = CoverageInfoCalculator(coverage_calculator, coverage_change_calculator, zenith_masker) - pipeline = NightPipeline(preprocessor, catalog_constructor, reverse_matcher, cloud_map_gem, cloud_coverage_info_calculator) + pipeline = NightPipeline(preprocessor, catalog_constructor, altaz_list_generator, reverse_matcher, cloud_map_gem, cloud_coverage_info_calculator) pipeline(image, obs_time) diff --git a/tests/unit/pipeline/night/catalog/test_pixel_catalog.py b/tests/unit/pipeline/night/catalog/test_pixel_catalog.py index cbfd452..8bfcb59 100644 --- a/tests/unit/pipeline/night/catalog/test_pixel_catalog.py +++ b/tests/unit/pipeline/night/catalog/test_pixel_catalog.py @@ -3,16 +3,20 @@ from pyobs_cloudcover.pipeline.night.catalog.pixel_catalog import PixelCatalog -def test_filter_close(): +def test_filter_close() -> None: sao = np.array([1, 2, 3]) + alt = np.array([80, 90, 80]) + az = np.array([0, 0, 180]) px = np.array([10, 10, 20]) py = np.array([10, 15, 20]) v_mag = np.array([0, 0, 0]) - catalog = PixelCatalog(sao, px, py, v_mag) + catalog = PixelCatalog(sao, alt, az, px, py, v_mag) catalog.filter_close(5) np.testing.assert_array_equal(catalog.sao, sao[2:]) + np.testing.assert_array_equal(catalog.alt, alt[2:]) + np.testing.assert_array_equal(catalog.az, az[2:]) np.testing.assert_array_equal(catalog.px, px[2:]) np.testing.assert_array_equal(catalog.py, py[2:]) np.testing.assert_array_equal(catalog.v_mag, v_mag[2:]) diff --git a/tests/unit/pipeline/night/test_cloud_map_generator.py b/tests/unit/pipeline/night/test_cloud_map_generator.py index 9546347..1db4d03 100644 --- a/tests/unit/pipeline/night/test_cloud_map_generator.py +++ b/tests/unit/pipeline/night/test_cloud_map_generator.py @@ -1,15 +1,22 @@ import numpy as np +from cloudmap_rs import AltAzCoord from pyobs_cloudcover.pipeline.night.catalog.pixel_catalog import PixelCatalog from pyobs_cloudcover.pipeline.night.cloud_map_generator.cloud_map_generator import CloudMapGenerator def test_call() -> None: - cloud_map_generator = CloudMapGenerator(1) + cloud_map_generator = CloudMapGenerator(20) - catalog = PixelCatalog(sao=np.array([0, 1]), px=np.array([1, 1]), py=np.array([1, 1]), v_mag=np.array([0, 1])) + catalog = PixelCatalog(sao=np.array([0, 1]), alt=np.array([85, 85]), az=np.array([0.0, 180]), px=np.array([1, 1]), py=np.array([1, 1]), v_mag=np.array([0, 1])) matches = [False, True] - cloud_map = cloud_map_generator(catalog, matches, 3, 3) + alt_az_image_list = [ + [None, AltAzCoord(np.deg2rad(89), 3*np.pi/2), None], + [AltAzCoord(np.deg2rad(89), 0), AltAzCoord(np.pi/2, 0), AltAzCoord(np.deg2rad(89), np.pi)], + [None, AltAzCoord(np.deg2rad(89), np.pi/2), None] + ] - np.testing.assert_array_equal(cloud_map, 0.5 * np.array([[np.nan, 1, np.nan], [1, 1, 1], [np.nan, 1, np.nan]])) + cloud_map = cloud_map_generator(catalog, matches, alt_az_image_list) + + np.testing.assert_array_almost_equal(cloud_map, np.array([[np.nan, 0.5, np.nan], [0.4, 0.5, 0.6], [np.nan, 0.5, np.nan]]))