-
Notifications
You must be signed in to change notification settings - Fork 3
/
data_file_links.html
154 lines (134 loc) · 8.82 KB
/
data_file_links.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>The data files used in the documentation — PyCogent 1.9 documentation</title>
<link rel="stylesheet" href="_static/agogo.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT: './',
VERSION: '1.9',
COLLAPSE_INDEX: false,
FILE_SUFFIX: '.html',
HAS_SOURCE: true
};
</script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<link rel="top" title="PyCogent 1.9 documentation" href="index.html" />
<link rel="next" title="Cogent Usage Examples" href="examples/index.html" />
<link rel="prev" title="Coding guidelines" href="coding_guidelines.html" />
<script type="text/javascript" src="http://www.google.com/jsapi?key=ABQIAAAAbW_pA971hrPgosv-Msv7hRQZ4X-jPDmWcshBrz2j7-fJvuUABRTGWmdiw2G89JpgztGlFGG8hDxRAw"></script>\
<script type="text/javascript" src="_static/google_feed.js"></script>
</head>
<body role="document">
<div class="header-wrapper" role="banner">
<div class="header">
<div class="headertitle"><a
href="index.html">PyCogent 1.9 documentation</a></div>
<div class="rel" role="navigation" aria-label="related navigation">
<a href="coding_guidelines.html" title="Coding guidelines"
accesskey="P">previous</a> |
<a href="examples/index.html" title="Cogent Usage Examples"
accesskey="N">next</a> |
<a href="genindex.html" title="General Index"
accesskey="I">index</a>
</div>
</div>
</div>
<div class="content-wrapper">
<div class="content">
<div class="document">
<div class="documentwrapper">
<div class="bodywrapper">
<div class="body" role="main">
<div class="section" id="the-data-files-used-in-the-documentation">
<h1>The data files used in the documentation<a class="headerlink" href="#the-data-files-used-in-the-documentation" title="Permalink to this headline">¶</a></h1>
<p>All data files referred to in the documentation can be download by clicking on the links below.</p>
<div class="admonition note">
<p class="first admonition-title">Note</p>
<p class="last">not all browsers handle the file suffixes well, so you may need to rename the downloaded files in order to use them.</p>
</div>
<p><a class="reference download internal" href="_downloads/4TSV.pdb" download=""><code class="xref download docutils literal"><span class="pre">4TSV.pdb</span></code></a></p>
<p><a class="reference download internal" href="_downloads/abglobin_aa.phylip" download=""><code class="xref download docutils literal"><span class="pre">abglobin_aa.phylip</span></code></a></p>
<p><a class="reference download internal" href="_downloads/dists_for_phylo.pickle" download=""><code class="xref download docutils literal"><span class="pre">dists_for_phylo.pickle</span></code></a></p>
<p><a class="reference download internal" href="_downloads/long_testseqs.fasta" download=""><code class="xref download docutils literal"><span class="pre">long_testseqs.fasta</span></code></a></p>
<p><a class="reference download internal" href="_downloads/motif_example.fasta" download=""><code class="xref download docutils literal"><span class="pre">motif_example.fasta</span></code></a></p>
<p><a class="reference download internal" href="_downloads/motif_example_meme_results.txt" download=""><code class="xref download docutils literal"><span class="pre">motif_example_meme_results.txt</span></code></a></p>
<p><a class="reference download internal" href="_downloads/primate_brca1.fasta" download=""><code class="xref download docutils literal"><span class="pre">primate_brca1.fasta</span></code></a></p>
<p><a class="reference download internal" href="_downloads/primate_brca1.tree" download=""><code class="xref download docutils literal"><span class="pre">primate_brca1.tree</span></code></a></p>
<p><a class="reference download internal" href="_downloads/primate_cdx2_promoter.fasta" download=""><code class="xref download docutils literal"><span class="pre">primate_cdx2_promoter.fasta</span></code></a></p>
<p><a class="reference download internal" href="_downloads/test.paml" download=""><code class="xref download docutils literal"><span class="pre">test.paml</span></code></a></p>
<p><a class="reference download internal" href="_downloads/test.tree" download=""><code class="xref download docutils literal"><span class="pre">test.tree</span></code></a></p>
<p><a class="reference download internal" href="_downloads/test2.fasta" download=""><code class="xref download docutils literal"><span class="pre">test2.fasta</span></code></a></p>
<p><a class="reference download internal" href="_downloads/trna_profile.fasta" download=""><code class="xref download docutils literal"><span class="pre">trna_profile.fasta</span></code></a></p>
<p><a class="reference download internal" href="_downloads/refseqs.fasta" download=""><code class="xref download docutils literal"><span class="pre">refseqs.fasta</span></code></a></p>
<p><a class="reference download internal" href="_downloads/refseqs_protein.fasta" download=""><code class="xref download docutils literal"><span class="pre">refseqs_protein.fasta</span></code></a></p>
<p><a class="reference download internal" href="_downloads/inseqs.fasta" download=""><code class="xref download docutils literal"><span class="pre">inseqs.fasta</span></code></a></p>
<p><a class="reference download internal" href="_downloads/inseqs_protein.fasta" download=""><code class="xref download docutils literal"><span class="pre">inseqs_protein.fasta</span></code></a></p>
</div>
</div>
</div>
</div>
</div>
<div class="sidebar">
<div class="news">
<table id="feed"><tr><td><h3><a href="http://pycogent.wordpress.com/">PyCogent News and Announcements</a></h3></td>
</tr></table></div>
<h3>Table Of Contents</h3>
<ul class="current">
<li class="toctree-l1"><a class="reference internal" href="install.html">Quick installation using pip</a></li>
<li class="toctree-l1"><a class="reference internal" href="README.html">The Readme</a></li>
<li class="toctree-l1"><a class="reference internal" href="coding_guidelines.html">Coding guidelines</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="#">The data files used in the documentation</a></li>
<li class="toctree-l1"><a class="reference internal" href="examples/index.html">Cogent Usage Examples</a></li>
<li class="toctree-l1"><a class="reference internal" href="cookbook/index.html">PyCogent Cookbook</a></li>
<li class="toctree-l1"><a class="reference internal" href="developer_notes.html">For Developers</a></li>
<li class="toctree-l1"><a class="reference internal" href="scripting_guidelines.html">Scripting guidelines</a></li>
<li class="toctree-l1"><a class="reference internal" href="licenses.html">Licenses and disclaimer</a></li>
<li class="toctree-l1"><a class="reference internal" href="ChangeLog.html">Changelog</a></li>
</ul>
<div role="search">
<h3 style="margin-top: 1.5em;">Search</h3>
<form class="search" action="search.html" method="get">
<input type="text" name="q" />
<input type="submit" value="Go" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div>
<div class="clearer"></div>
</div>
</div>
<div class="footer-wrapper">
<div class="footer">
<div class="left">
<div role="navigation" aria-label="related navigaton">
<a href="coding_guidelines.html" title="Coding guidelines"
>previous</a> |
<a href="examples/index.html" title="Cogent Usage Examples"
>next</a> |
<a href="genindex.html" title="General Index"
>index</a>
</div>
<div role="note" aria-label="source link">
<br/>
<a href="_sources/data_file_links.txt"
rel="nofollow">Show Source</a>
</div>
</div>
<div class="right">
<div class="footer" role="contentinfo">
© Copyright 2016, PyCogent Team.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.4.1.
</div>
</div>
<div class="clearer"></div>
</div>
</div>
</body>
</html>