From f944df33afa8745d1f6c5ce10e1483207296c489 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 10:54:29 +0800
Subject: [PATCH 01/32] Update to Python 3.13

---
 scripts/Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/Dockerfile b/scripts/Dockerfile
index e6fac122ff..5684e6d289 100644
--- a/scripts/Dockerfile
+++ b/scripts/Dockerfile
@@ -1,4 +1,4 @@
-FROM python:3.12-slim-bullseye
+FROM python:3.13-slim-bullseye
 COPY --from=ghcr.io/astral-sh/uv:latest /uv /bin/uv
 
 WORKDIR /

From b9f0faf5164ac9617689c08f005bf023965ded99 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 10:59:46 +0800
Subject: [PATCH 02/32] Update to Python 3.13

---
 docs/source/user_guide/installation/gnu-linux-mac.rst | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/docs/source/user_guide/installation/gnu-linux-mac.rst b/docs/source/user_guide/installation/gnu-linux-mac.rst
index 97171b53b7..421597e1fd 100644
--- a/docs/source/user_guide/installation/gnu-linux-mac.rst
+++ b/docs/source/user_guide/installation/gnu-linux-mac.rst
@@ -6,7 +6,7 @@ GNU/Linux & macOS
 Prerequisites
 -------------
 
-To use PyBaMM, you must have Python 3.9, 3.10, 3.11, or 3.12 installed.
+To use PyBaMM, you must have Python 3.9, 3.10, 3.11, 3.12, or 3.13 installed.
 
 .. tab:: Debian-based distributions (Debian, Ubuntu)
 
@@ -43,7 +43,7 @@ User install
 
 We recommend to install PyBaMM within a virtual environment, in order
 not to alter any distribution Python files.
-First, make sure you are using Python 3.9, 3.10, 3.11, or 3.12.
+First, make sure you are using Python 3.9, 3.10, 3.11, 3.12, or 3.13.
 To create a virtual environment ``env`` within your current directory type:
 
 .. code:: bash

From d1458aba51d8a049af336e425d07274a3ccb4818 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:06:47 +0800
Subject: [PATCH 03/32] Update to Python 3.13

---
 .readthedocs.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index ae6a74a5cf..b99d232f7d 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -19,7 +19,7 @@ build:
     - "graphviz"
   os: ubuntu-22.04
   tools:
-    python: "3.12"
+    python: "3.13"
   jobs:
     # Unshallow the git clone otherwise this may cause issues with Sphinx extensions
     post_checkout:

From 26377a2ec1c9e0d4b505d37963526f8a68c592c9 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:07:24 +0800
Subject: [PATCH 04/32] Update to Python 3.13

---
 docs/source/user_guide/installation/install-from-source.rst | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/source/user_guide/installation/install-from-source.rst b/docs/source/user_guide/installation/install-from-source.rst
index ea664b4a5b..62e698d6a6 100644
--- a/docs/source/user_guide/installation/install-from-source.rst
+++ b/docs/source/user_guide/installation/install-from-source.rst
@@ -25,7 +25,7 @@ or download the source archive on the repository's homepage.
 
 To install PyBaMM, you will need:
 
-- Python 3 (PyBaMM supports versions 3.9, 3.10, 3.11, and 3.12)
+- Python 3 (PyBaMM supports versions 3.9, 3.10, 3.11, 3.12, and 3.13)
 - The Python headers file for your current Python version.
 - A BLAS library (for instance `openblas <https://www.openblas.net/>`_).
 - A C compiler (ex: ``gcc``).

From d27c53bd8c5e664803125b9a3932d9907a17f2af Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:09:43 +0800
Subject: [PATCH 05/32] Update to Python 3.13

---
 pyproject.toml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pyproject.toml b/pyproject.toml
index 1db7c927a3..de5506305a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -32,6 +32,7 @@ classifiers = [
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
     "Topic :: Scientific/Engineering",
 ]
 dependencies = [

From bf0810645177c6acc54c22d355223af9322f8bdd Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:10:17 +0800
Subject: [PATCH 06/32] Update to Python 3.13

---
 docs/source/user_guide/installation/windows.rst | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/source/user_guide/installation/windows.rst b/docs/source/user_guide/installation/windows.rst
index 44dc79a7d3..1bb5f80d27 100644
--- a/docs/source/user_guide/installation/windows.rst
+++ b/docs/source/user_guide/installation/windows.rst
@@ -6,7 +6,7 @@ Windows
 Prerequisites
 -------------
 
-To use PyBaMM, you must have Python 3.9, 3.10, 3.11, or 3.12 installed.
+To use PyBaMM, you must have Python 3.9, 3.10, 3.11, 3.12, or 3.13 installed.
 
 To install Python 3 download the installation files from `Python’s
 website <https://www.python.org/downloads/windows/>`__. Make sure to

From 6de83a5836a485fc0be4c4fe7b933c882742cd5b Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:10:43 +0800
Subject: [PATCH 07/32] Update to Python 3.13

---
 .github/workflows/update_version.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/update_version.yml b/.github/workflows/update_version.yml
index 899667d2de..015b348aa1 100644
--- a/.github/workflows/update_version.yml
+++ b/.github/workflows/update_version.yml
@@ -23,7 +23,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Install dependencies
         run: |

From ee33fcfd3a6a8e44dcc99c935866118a8d16e759 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:11:10 +0800
Subject: [PATCH 08/32] Update to Python 3.13

---
 .github/workflows/benchmark_on_push.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/benchmark_on_push.yml b/.github/workflows/benchmark_on_push.yml
index 2883eb5f26..c0319ef02c 100644
--- a/.github/workflows/benchmark_on_push.yml
+++ b/.github/workflows/benchmark_on_push.yml
@@ -13,10 +13,10 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Install Linux system dependencies
         run: |

From c6ae01f690f78911939f061dbc8f368445b55c00 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:11:44 +0800
Subject: [PATCH 09/32] Update to Python 3.13

---
 .github/workflows/periodic_benchmarks.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/periodic_benchmarks.yml b/.github/workflows/periodic_benchmarks.yml
index 14f97c55d8..6d2aa0be52 100644
--- a/.github/workflows/periodic_benchmarks.yml
+++ b/.github/workflows/periodic_benchmarks.yml
@@ -21,10 +21,10 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Install Linux system dependencies
         run: |
@@ -63,10 +63,10 @@ jobs:
     needs: benchmarks
     runs-on: ubuntu-latest
     steps:
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Install asv
         run: pip install asv

From 684793419921b278e4a60ffdd4e88291699c06c8 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:12:11 +0800
Subject: [PATCH 10/32] Update to Python 3.13

---
 .github/workflows/run_benchmarks_over_history.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/run_benchmarks_over_history.yml b/.github/workflows/run_benchmarks_over_history.yml
index d66704a635..043e0c7ce5 100644
--- a/.github/workflows/run_benchmarks_over_history.yml
+++ b/.github/workflows/run_benchmarks_over_history.yml
@@ -23,10 +23,10 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Install nox and asv
         run: pip install -U pip nox asv
@@ -58,10 +58,10 @@ jobs:
     needs: benchmarks
     runs-on: ubuntu-latest
     steps:
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Install asv
         run: pip install asv

From 56483484a9ae20cb26649ad089c1ae49cbf639c4 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:12:34 +0800
Subject: [PATCH 11/32] Update to Python 3.13

---
 .github/workflows/publish_pypi.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/publish_pypi.yml b/.github/workflows/publish_pypi.yml
index 89c9b057c1..b35a0d572c 100644
--- a/.github/workflows/publish_pypi.yml
+++ b/.github/workflows/publish_pypi.yml
@@ -275,7 +275,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Build SDist
         run: pipx run build --sdist

From d6ac76e2c213970a0afec7b0b4c94bcfbe86e98c Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:16:01 +0800
Subject: [PATCH 12/32] Update to Python 3.13

---
 .github/workflows/test_on_push.yml | 26 +++++++++++++-------------
 1 file changed, 13 insertions(+), 13 deletions(-)

diff --git a/.github/workflows/test_on_push.yml b/.github/workflows/test_on_push.yml
index 32e3017446..a31016b7f5 100644
--- a/.github/workflows/test_on_push.yml
+++ b/.github/workflows/test_on_push.yml
@@ -25,7 +25,7 @@ jobs:
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Set up uv
         run: python -m pip install uv
@@ -42,7 +42,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-13, macos-14, windows-latest]
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
     name: Tests (${{ matrix.os }} / Python ${{ matrix.python-version }})
 
     steps:
@@ -114,15 +114,15 @@ jobs:
         run: python -m nox -s pybamm-requires
 
       - name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
-        if: matrix.os != 'ubuntu-latest' || matrix.python-version != '3.12'
+        if: matrix.os != 'ubuntu-latest' || matrix.python-version != '3.13'
         run: python -m nox -s unit
 
       - name: Run coverage tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
-        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13'
         run: python -m nox -s coverage
 
       - name: Upload coverage report
-        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13'
         uses: codecov/codecov-action@v4.6.0
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
@@ -181,7 +181,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       fail-fast: false
-    name: Example notebooks (ubuntu-latest / Python 3.12)
+    name: Example notebooks (ubuntu-latest / Python 3.13)
 
     steps:
       - name: Check out PyBaMM repository
@@ -200,11 +200,11 @@ jobs:
           sudo dot -c
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         id: setup-python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
           cache: 'pip'
 
       - name: Set up uv
@@ -229,7 +229,7 @@ jobs:
         timeout-minutes: 10
         run: python -m nox -s pybamm-requires
 
-      - name: Run example notebooks tests for GNU/Linux with Python 3.12
+      - name: Run example notebooks tests for GNU/Linux with Python 3.13
         run: python -m nox -s examples
 
   run_scripts_tests:
@@ -237,7 +237,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       fail-fast: false
-    name: Example scripts (ubuntu-latest / Python 3.12)
+    name: Example scripts (ubuntu-latest / Python 3.13)
 
     steps:
       - name: Check out PyBaMM repository
@@ -256,11 +256,11 @@ jobs:
           sudo dot -c
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         id: setup-python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
           cache: 'pip'
 
       - name: Set up uv
@@ -285,5 +285,5 @@ jobs:
         timeout-minutes: 10
         run: python -m nox -s pybamm-requires
 
-      - name: Run example scripts tests for GNU/Linux with Python 3.12
+      - name: Run example scripts tests for GNU/Linux with Python 3.13
         run: python -m nox -s scripts

From b2e2d7b0e52436c0dc162116ebbaa3afa757c505 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:17:31 +0800
Subject: [PATCH 13/32] Update to Python 3.13

---
 .github/workflows/run_periodic_tests.yml | 24 ++++++++++++------------
 1 file changed, 12 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/run_periodic_tests.yml b/.github/workflows/run_periodic_tests.yml
index 6e86de054e..85f05a50f8 100644
--- a/.github/workflows/run_periodic_tests.yml
+++ b/.github/workflows/run_periodic_tests.yml
@@ -32,7 +32,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ ubuntu-latest, macos-13, macos-14, windows-latest ]
-        python-version: [ "3.9", "3.10", "3.11", "3.12" ]
+        python-version: [ "3.9", "3.10", "3.11", "3.12", "3.13" ]
     name: Tests (${{ matrix.os }} / Python ${{ matrix.python-version }})
 
     steps:
@@ -80,15 +80,15 @@ jobs:
         run: python -m nox -s pybamm-requires
 
       - name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
-        if: matrix.os != 'ubuntu-latest' || matrix.python-version != '3.12'
+        if: matrix.os != 'ubuntu-latest' || matrix.python-version != '3.13'
         run: python -m nox -s unit
 
       - name: Run coverage tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
-        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13'
         run: python -m nox -s coverage
 
       - name: Upload coverage report
-        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13'
         uses: codecov/codecov-action@v4.6.0
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
@@ -131,7 +131,7 @@ jobs:
 
   run_example_tests:
     runs-on: ubuntu-latest
-    name: Example notebooks (ubuntu-latest / Python 3.12)
+    name: Example notebooks (ubuntu-latest / Python 3.13)
 
     steps:
       - name: Check out PyBaMM repository
@@ -142,10 +142,10 @@ jobs:
           sudo apt-get update
           sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng
 
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Set up uv
         run: python -m pip install uv
@@ -157,12 +157,12 @@ jobs:
         timeout-minutes: 10
         run: python -m nox -s pybamm-requires
 
-      - name: Run example notebooks tests for GNU/Linux with Python 3.12
+      - name: Run example notebooks tests for GNU/Linux with Python 3.13
         run: python -m nox -s examples
 
   run_scripts_tests:
     runs-on: ubuntu-latest
-    name: Example scripts (ubuntu-latest / Python 3.12)
+    name: Example scripts (ubuntu-latest / Python 3.13)
 
     steps:
       - name: Check out PyBaMM repository
@@ -173,10 +173,10 @@ jobs:
           sudo apt-get update
           sudo apt install gfortran gcc graphviz libopenblas-dev texlive-latex-extra dvipng
 
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         uses: actions/setup-python@v5
         with:
-          python-version: 3.12
+          python-version: 3.13
 
       - name: Set up uv
         run: python -m pip install uv
@@ -188,5 +188,5 @@ jobs:
         timeout-minutes: 10
         run: python -m nox -s pybamm-requires
 
-      - name: Run example scripts tests for GNU/Linux with Python 3.12
+      - name: Run example scripts tests for GNU/Linux with Python 3.13
         run: python -m nox -s scripts

From 16db46364024ea375c0e2b5a7beb2046f095dfa2 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Thu, 31 Oct 2024 11:22:26 +0800
Subject: [PATCH 14/32] Update CHANGELOG.md

---
 CHANGELOG.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 9167391c10..1db3f43a12 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,6 +2,7 @@
 
 ## Features
 
+- Added support for Python 3.13 (#4552)
 - Adds support to `pybamm.Experiment` for the `output_variables` option in the `IDAKLUSolver`. ([#4534](https://github.com/pybamm-team/PyBaMM/pull/4534))
 - Adds an option "voltage as a state" that can be "false" (default) or "true". If "true" adds an explicit algebraic equation for the voltage. ([#4507](https://github.com/pybamm-team/PyBaMM/pull/4507))
 - Improved `QuickPlot` accuracy for simulations with Hermite interpolation. ([#4483](https://github.com/pybamm-team/PyBaMM/pull/4483))

From 381622e71904327d0dc1d20847a4ead4f51f0f07 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 1 Nov 2024 00:26:10 +0800
Subject: [PATCH 15/32] Revert to Python 3.12 in benchmark_on_push.yml

---
 .github/workflows/benchmark_on_push.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/benchmark_on_push.yml b/.github/workflows/benchmark_on_push.yml
index c0319ef02c..2883eb5f26 100644
--- a/.github/workflows/benchmark_on_push.yml
+++ b/.github/workflows/benchmark_on_push.yml
@@ -13,10 +13,10 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - name: Set up Python 3.13
+      - name: Set up Python 3.12
         uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
 
       - name: Install Linux system dependencies
         run: |

From 468a1169980bb8473eff052cc1de352092279dfa Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 1 Nov 2024 00:26:51 +0800
Subject: [PATCH 16/32] Revert to Python 3.12 in periodic_benchmarks.yml

---
 .github/workflows/periodic_benchmarks.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/periodic_benchmarks.yml b/.github/workflows/periodic_benchmarks.yml
index 6d2aa0be52..14f97c55d8 100644
--- a/.github/workflows/periodic_benchmarks.yml
+++ b/.github/workflows/periodic_benchmarks.yml
@@ -21,10 +21,10 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python 3.13
+      - name: Set up Python 3.12
         uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
 
       - name: Install Linux system dependencies
         run: |
@@ -63,10 +63,10 @@ jobs:
     needs: benchmarks
     runs-on: ubuntu-latest
     steps:
-      - name: Set up Python 3.13
+      - name: Set up Python 3.12
         uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
 
       - name: Install asv
         run: pip install asv

From 11fa05148e4274cbaffbc9e97ccd08b5e646a2dd Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 1 Nov 2024 00:27:36 +0800
Subject: [PATCH 17/32] Revert to Python 3.12 in publish_pypi.yml

---
 .github/workflows/publish_pypi.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/publish_pypi.yml b/.github/workflows/publish_pypi.yml
index b35a0d572c..89c9b057c1 100644
--- a/.github/workflows/publish_pypi.yml
+++ b/.github/workflows/publish_pypi.yml
@@ -275,7 +275,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
 
       - name: Build SDist
         run: pipx run build --sdist

From 43e202f5dc71d82e72ac800414a74e053e27b045 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 1 Nov 2024 00:28:26 +0800
Subject: [PATCH 18/32] Revert to Python 3.12 in
 run_benchmarks_over_history.yml

---
 .github/workflows/run_benchmarks_over_history.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/run_benchmarks_over_history.yml b/.github/workflows/run_benchmarks_over_history.yml
index 043e0c7ce5..d66704a635 100644
--- a/.github/workflows/run_benchmarks_over_history.yml
+++ b/.github/workflows/run_benchmarks_over_history.yml
@@ -23,10 +23,10 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - name: Set up Python 3.13
+      - name: Set up Python 3.12
         uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
 
       - name: Install nox and asv
         run: pip install -U pip nox asv
@@ -58,10 +58,10 @@ jobs:
     needs: benchmarks
     runs-on: ubuntu-latest
     steps:
-      - name: Set up Python 3.13
+      - name: Set up Python 3.12
         uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
 
       - name: Install asv
         run: pip install asv

From 2ea8116e2e3694b0ae71ddcccc5dcd2514de02d3 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 1 Nov 2024 00:37:32 +0800
Subject: [PATCH 19/32] Revert to Python 3.12 in run_periodic_tests.yml

---
 .github/workflows/run_periodic_tests.yml | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/run_periodic_tests.yml b/.github/workflows/run_periodic_tests.yml
index 85f05a50f8..d6d87fa3e3 100644
--- a/.github/workflows/run_periodic_tests.yml
+++ b/.github/workflows/run_periodic_tests.yml
@@ -131,7 +131,7 @@ jobs:
 
   run_example_tests:
     runs-on: ubuntu-latest
-    name: Example notebooks (ubuntu-latest / Python 3.13)
+    name: Example notebooks (ubuntu-latest / Python 3.12)
 
     steps:
       - name: Check out PyBaMM repository
@@ -142,10 +142,10 @@ jobs:
           sudo apt-get update
           sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng
 
-      - name: Set up Python 3.13
+      - name: Set up Python 3.12
         uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
 
       - name: Set up uv
         run: python -m pip install uv
@@ -157,12 +157,12 @@ jobs:
         timeout-minutes: 10
         run: python -m nox -s pybamm-requires
 
-      - name: Run example notebooks tests for GNU/Linux with Python 3.13
+      - name: Run example notebooks tests for GNU/Linux with Python 3.12
         run: python -m nox -s examples
 
   run_scripts_tests:
     runs-on: ubuntu-latest
-    name: Example scripts (ubuntu-latest / Python 3.13)
+    name: Example scripts (ubuntu-latest / Python 3.12)
 
     steps:
       - name: Check out PyBaMM repository
@@ -173,10 +173,10 @@ jobs:
           sudo apt-get update
           sudo apt install gfortran gcc graphviz libopenblas-dev texlive-latex-extra dvipng
 
-      - name: Set up Python 3.13
+      - name: Set up Python 3.12
         uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
 
       - name: Set up uv
         run: python -m pip install uv
@@ -188,5 +188,5 @@ jobs:
         timeout-minutes: 10
         run: python -m nox -s pybamm-requires
 
-      - name: Run example scripts tests for GNU/Linux with Python 3.13
+      - name: Run example scripts tests for GNU/Linux with Python 3.12
         run: python -m nox -s scripts

From 56b0360f5e4892c85bca75d4ab9cc062e16081df Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 1 Nov 2024 00:41:01 +0800
Subject: [PATCH 20/32] Revert to Python 3.12 in test_on_push.yml

---
 .github/workflows/test_on_push.yml | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/test_on_push.yml b/.github/workflows/test_on_push.yml
index a31016b7f5..92e9cf008a 100644
--- a/.github/workflows/test_on_push.yml
+++ b/.github/workflows/test_on_push.yml
@@ -200,11 +200,11 @@ jobs:
           sudo dot -c
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
-      - name: Set up Python 3.13
+      - name: Set up Python 3.12
         id: setup-python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
           cache: 'pip'
 
       - name: Set up uv
@@ -229,7 +229,7 @@ jobs:
         timeout-minutes: 10
         run: python -m nox -s pybamm-requires
 
-      - name: Run example notebooks tests for GNU/Linux with Python 3.13
+      - name: Run example notebooks tests for GNU/Linux with Python 3.12
         run: python -m nox -s examples
 
   run_scripts_tests:
@@ -237,7 +237,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       fail-fast: false
-    name: Example scripts (ubuntu-latest / Python 3.13)
+    name: Example scripts (ubuntu-latest / Python 3.12)
 
     steps:
       - name: Check out PyBaMM repository
@@ -256,11 +256,11 @@ jobs:
           sudo dot -c
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
-      - name: Set up Python 3.13
+      - name: Set up Python 3.12
         id: setup-python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
           cache: 'pip'
 
       - name: Set up uv
@@ -285,5 +285,5 @@ jobs:
         timeout-minutes: 10
         run: python -m nox -s pybamm-requires
 
-      - name: Run example scripts tests for GNU/Linux with Python 3.13
+      - name: Run example scripts tests for GNU/Linux with Python 3.12
         run: python -m nox -s scripts

From 8f19f650be9518430ba08198c844bc5e36f2f4ba Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 1 Nov 2024 00:42:13 +0800
Subject: [PATCH 21/32] Revert to Python 3.12 in test_on_push.yml

---
 .github/workflows/test_on_push.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test_on_push.yml b/.github/workflows/test_on_push.yml
index 92e9cf008a..a82ec2c5e3 100644
--- a/.github/workflows/test_on_push.yml
+++ b/.github/workflows/test_on_push.yml
@@ -181,7 +181,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       fail-fast: false
-    name: Example notebooks (ubuntu-latest / Python 3.13)
+    name: Example notebooks (ubuntu-latest / Python 3.12)
 
     steps:
       - name: Check out PyBaMM repository

From 13aa1ba2dc87ea6add97cf8e345e7c11a923aa03 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 1 Nov 2024 00:43:44 +0800
Subject: [PATCH 22/32] Revert to Python 3.12 in update_version.yml

---
 .github/workflows/update_version.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/update_version.yml b/.github/workflows/update_version.yml
index 015b348aa1..899667d2de 100644
--- a/.github/workflows/update_version.yml
+++ b/.github/workflows/update_version.yml
@@ -23,7 +23,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
 
       - name: Install dependencies
         run: |

From c31dd114e839cc2a2550342691e20bcbdb10495c Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 1 Nov 2024 00:44:33 +0800
Subject: [PATCH 23/32] Revert to Python 3.12 in .readthedocs.yaml

---
 .readthedocs.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index b99d232f7d..ae6a74a5cf 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -19,7 +19,7 @@ build:
     - "graphviz"
   os: ubuntu-22.04
   tools:
-    python: "3.13"
+    python: "3.12"
   jobs:
     # Unshallow the git clone otherwise this may cause issues with Sphinx extensions
     post_checkout:

From 4c7769f620b5c0c88c59f292e5ac338f82b8026a Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 1 Nov 2024 00:46:07 +0800
Subject: [PATCH 24/32] Revert to Python 3.12 in test_on_push.yml

---
 .github/workflows/test_on_push.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test_on_push.yml b/.github/workflows/test_on_push.yml
index a82ec2c5e3..ca54c560a7 100644
--- a/.github/workflows/test_on_push.yml
+++ b/.github/workflows/test_on_push.yml
@@ -25,7 +25,7 @@ jobs:
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.13
+          python-version: 3.12
 
       - name: Set up uv
         run: python -m pip install uv

From 3db7a529a99565d40580874a7e2f78f6b5a8db6b Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 1 Nov 2024 00:47:28 +0800
Subject: [PATCH 25/32] Revert to Python 3.12 in Dockerfile

---
 scripts/Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/Dockerfile b/scripts/Dockerfile
index 5684e6d289..e6fac122ff 100644
--- a/scripts/Dockerfile
+++ b/scripts/Dockerfile
@@ -1,4 +1,4 @@
-FROM python:3.13-slim-bullseye
+FROM python:3.12-slim-bullseye
 COPY --from=ghcr.io/astral-sh/uv:latest /uv /bin/uv
 
 WORKDIR /

From 05cf1b610815c693f971c3a4f73298eef46bf156 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 8 Nov 2024 21:35:45 +0800
Subject: [PATCH 26/32] Try 0.4.35

---
 .github/workflows/run_periodic_tests.yml | 6 +++---
 .github/workflows/test_on_push.yml       | 6 +++---
 CHANGELOG.md                             | 2 +-
 pyproject.toml                           | 4 ++--
 4 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/run_periodic_tests.yml b/.github/workflows/run_periodic_tests.yml
index d6d87fa3e3..6edaf09ebf 100644
--- a/.github/workflows/run_periodic_tests.yml
+++ b/.github/workflows/run_periodic_tests.yml
@@ -80,15 +80,15 @@ jobs:
         run: python -m nox -s pybamm-requires
 
       - name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
-        if: matrix.os != 'ubuntu-latest' || matrix.python-version != '3.13'
+        if: matrix.os != 'ubuntu-latest' || matrix.python-version != '3.12'
         run: python -m nox -s unit
 
       - name: Run coverage tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
-        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13'
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
         run: python -m nox -s coverage
 
       - name: Upload coverage report
-        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13'
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
         uses: codecov/codecov-action@v4.6.0
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
diff --git a/.github/workflows/test_on_push.yml b/.github/workflows/test_on_push.yml
index ca54c560a7..0cedac8e5d 100644
--- a/.github/workflows/test_on_push.yml
+++ b/.github/workflows/test_on_push.yml
@@ -114,15 +114,15 @@ jobs:
         run: python -m nox -s pybamm-requires
 
       - name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
-        if: matrix.os != 'ubuntu-latest' || matrix.python-version != '3.13'
+        if: matrix.os != 'ubuntu-latest' || matrix.python-version != '3.12'
         run: python -m nox -s unit
 
       - name: Run coverage tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
-        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13'
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
         run: python -m nox -s coverage
 
       - name: Upload coverage report
-        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13'
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
         uses: codecov/codecov-action@v4.6.0
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 1db3f43a12..dc02cda43a 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,7 +2,7 @@
 
 ## Features
 
-- Added support for Python 3.13 (#4552)
+- Added support for Python 3.13 ([#4552](https://github.com/pybamm-team/PyBaMM/pull/4552))
 - Adds support to `pybamm.Experiment` for the `output_variables` option in the `IDAKLUSolver`. ([#4534](https://github.com/pybamm-team/PyBaMM/pull/4534))
 - Adds an option "voltage as a state" that can be "false" (default) or "true". If "true" adds an explicit algebraic equation for the voltage. ([#4507](https://github.com/pybamm-team/PyBaMM/pull/4507))
 - Improved `QuickPlot` accuracy for simulations with Hermite interpolation. ([#4483](https://github.com/pybamm-team/PyBaMM/pull/4483))
diff --git a/pyproject.toml b/pyproject.toml
index de5506305a..8ae0e2e05a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -121,8 +121,8 @@ dev = [
 # Note: These must be kept in sync with the versions defined in pybamm/util.py, and
 #       must remain compatible with IREE (see noxfile.py for IREE compatibility).
 jax = [
-    "jax==0.4.27",
-    "jaxlib==0.4.27",
+    "jax==0.4.35",
+    "jaxlib==0.4.35",
 ]
 # For MLIR expression evaluation (IDAKLU Solver)
 iree = [

From 58dceff4e2227ade8edc13a15213173ba4124405 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 8 Nov 2024 21:38:39 +0800
Subject: [PATCH 27/32] Try 0.4.30

---
 pyproject.toml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 8ae0e2e05a..d619476157 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -121,8 +121,8 @@ dev = [
 # Note: These must be kept in sync with the versions defined in pybamm/util.py, and
 #       must remain compatible with IREE (see noxfile.py for IREE compatibility).
 jax = [
-    "jax==0.4.35",
-    "jaxlib==0.4.35",
+    "jax==0.4.30",
+    "jaxlib==0.4.30",
 ]
 # For MLIR expression evaluation (IDAKLU Solver)
 iree = [

From b0d022e4bac523c636f43157bceb959d03921c0c Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 8 Nov 2024 21:50:14 +0800
Subject: [PATCH 28/32] Update util.py to jax 0.4.30

---
 src/pybamm/util.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/pybamm/util.py b/src/pybamm/util.py
index 5b10b23fcb..e536d7fd09 100644
--- a/src/pybamm/util.py
+++ b/src/pybamm/util.py
@@ -13,8 +13,8 @@
 
 # Versions of jax and jaxlib compatible with PyBaMM. Note: these are also defined in
 # the extras dependencies in pyproject.toml, and therefore must be kept in sync.
-JAX_VERSION = "0.4.27"
-JAXLIB_VERSION = "0.4.27"
+JAX_VERSION = "0.4.30"
+JAXLIB_VERSION = "0.4.30"
 
 
 def root_dir():

From a987fd66cb52f5c8e4136fd247d0e3efb0e170b0 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Fri, 8 Nov 2024 21:59:26 +0800
Subject: [PATCH 29/32] Use newer jax version for python >= 3.13

---
 pyproject.toml     | 6 ++++--
 src/pybamm/util.py | 5 +++--
 2 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index d619476157..a47240b97b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -121,8 +121,10 @@ dev = [
 # Note: These must be kept in sync with the versions defined in pybamm/util.py, and
 #       must remain compatible with IREE (see noxfile.py for IREE compatibility).
 jax = [
-    "jax==0.4.30",
-    "jaxlib==0.4.30",
+    "jax==0.4.27; python_version <'3.13'",
+    "jaxlib==0.4.27; python_version <'3.13'",
+    "jax==0.4.34; python_version >='3.13'",
+    "jaxlib==0.4.34; python_version >='3.13'",
 ]
 # For MLIR expression evaluation (IDAKLU Solver)
 iree = [
diff --git a/src/pybamm/util.py b/src/pybamm/util.py
index e536d7fd09..6afe3f7d66 100644
--- a/src/pybamm/util.py
+++ b/src/pybamm/util.py
@@ -5,6 +5,7 @@
 import pathlib
 import pickle
 import subprocess
+import sys
 import timeit
 import difflib
 from warnings import warn
@@ -13,8 +14,8 @@
 
 # Versions of jax and jaxlib compatible with PyBaMM. Note: these are also defined in
 # the extras dependencies in pyproject.toml, and therefore must be kept in sync.
-JAX_VERSION = "0.4.30"
-JAXLIB_VERSION = "0.4.30"
+JAX_VERSION = "0.4.34" if sys.version_info.minor >= 13 else "0.4.27"
+JAXLIB_VERSION = "0.4.34" if sys.version_info.minor >= 13 else "0.4.27"
 
 
 def root_dir():

From 5a5fb82d07f4393942037fc3e580cefebbcd3421 Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Mon, 11 Nov 2024 06:31:31 +0800
Subject: [PATCH 30/32] Update src/pybamm/util.py

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>
---
 src/pybamm/util.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/pybamm/util.py b/src/pybamm/util.py
index 6afe3f7d66..52740cd501 100644
--- a/src/pybamm/util.py
+++ b/src/pybamm/util.py
@@ -14,8 +14,8 @@
 
 # Versions of jax and jaxlib compatible with PyBaMM. Note: these are also defined in
 # the extras dependencies in pyproject.toml, and therefore must be kept in sync.
-JAX_VERSION = "0.4.34" if sys.version_info.minor >= 13 else "0.4.27"
-JAXLIB_VERSION = "0.4.34" if sys.version_info.minor >= 13 else "0.4.27"
+JAX_VERSION = "0.4.27" if sys.version_info < (3, 10) else "0.4.34"
+JAXLIB_VERSION = "0.4.27" if sys.version_info < (3, 10) else "0.4.34"
 
 
 def root_dir():

From 50618c3117e43d520e336332ad6ebd168001c48e Mon Sep 17 00:00:00 2001
From: Wu Tingfeng <wutingfeng@outlook.com>
Date: Mon, 11 Nov 2024 06:31:48 +0800
Subject: [PATCH 31/32] Update pyproject.toml

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>
---
 pyproject.toml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index a47240b97b..e7fc62b4b3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -121,10 +121,10 @@ dev = [
 # Note: These must be kept in sync with the versions defined in pybamm/util.py, and
 #       must remain compatible with IREE (see noxfile.py for IREE compatibility).
 jax = [
-    "jax==0.4.27; python_version <'3.13'",
-    "jaxlib==0.4.27; python_version <'3.13'",
-    "jax==0.4.34; python_version >='3.13'",
-    "jaxlib==0.4.34; python_version >='3.13'",
+    "jax==0.4.27; python_version <'3.10'",
+    "jaxlib==0.4.27; python_version <'3.10'",
+    "jax==0.4.34; python_version >='3.10'",
+    "jaxlib==0.4.34; python_version >='3.10'",
 ]
 # For MLIR expression evaluation (IDAKLU Solver)
 iree = [

From 97869d78a0f3b70de17203d2ffa90f5bb7d28c7a Mon Sep 17 00:00:00 2001
From: kratman <kratmandu@gmail.com>
Date: Fri, 15 Nov 2024 16:56:17 -0500
Subject: [PATCH 32/32] Update noxfile

---
 noxfile.py | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/noxfile.py b/noxfile.py
index 5ab32f463f..4a41a50140 100644
--- a/noxfile.py
+++ b/noxfile.py
@@ -34,7 +34,16 @@ def set_iree_state():
                 ),
                 stacklevel=2,
             )
-            return "OFF"
+            state = "OFF"
+        if sys.version_info >= (3, 13):
+            warnings.warn(
+                (
+                    "IREE is not available for Python 3.13 or higher. "
+                    "Setting PYBAMM_IDAKLU_EXPR_IREE=OFF."
+                ),
+                stacklevel=2,
+            )
+            state = "OFF"
     return state