diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip index c1e994e8..a6336118 100644 Binary files a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ diff --git a/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip b/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip index a86105d1..e64ddcb1 100644 Binary files a/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip and b/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip differ diff --git a/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip b/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip index 4389dc9e..7b6d6ab7 100644 Binary files a/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip and b/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip differ diff --git a/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip b/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip index d1b6e5de..852ab050 100644 Binary files a/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip and b/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip differ diff --git a/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip b/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip index 825a8874..9fae5b65 100644 Binary files a/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip and b/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip differ diff --git a/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip b/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip index a29ae5af..a0d8dd89 100644 Binary files a/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip and b/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip differ diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip index ffdb9e6e..5bfb713d 100644 Binary files a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ diff --git a/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip b/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip index c4332467..fe4a60be 100644 Binary files a/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip and b/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip differ diff --git a/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png b/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png index 94f29a8e..33c2df46 100644 Binary files a/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png and b/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png differ diff --git a/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png b/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png index 8f1e379b..c963e903 100644 Binary files a/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png and b/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png differ diff --git a/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt b/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt index 767369e1..c26edb2a 100644 --- a/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt +++ b/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt @@ -144,7 +144,7 @@ To check if the constructed PAG is a valid one in pywhy-graphs, we can simply do .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'I', 'L', 'S', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'S', 'PSH', 'G', 'L', 'I'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) True @@ -180,7 +180,7 @@ relationship. As such, the resulting graph is no longer a valid PAG. .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'I', 'L', 'S', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'S', 'PSH', 'G', 'L', 'I'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) False @@ -195,9 +195,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.188 seconds) + **Total running time of the script:** (0 minutes 1.045 seconds) -**Estimated memory usage:** 164 MB +**Estimated memory usage:** 165 MB .. _sphx_glr_download_auto_examples_intro_checking_validity_of_a_pag.py: diff --git a/dev/_sources/auto_examples/intro/inducing_path.rst.txt b/dev/_sources/auto_examples/intro/inducing_path.rst.txt index 04e1d366..05018772 100644 --- a/dev/_sources/auto_examples/intro/inducing_path.rst.txt +++ b/dev/_sources/auto_examples/intro/inducing_path.rst.txt @@ -241,9 +241,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.248 seconds) + **Total running time of the script:** (0 minutes 0.950 seconds) -**Estimated memory usage:** 162 MB +**Estimated memory usage:** 164 MB .. _sphx_glr_download_auto_examples_intro_inducing_path.py: diff --git a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt index f5862e1e..8cdf4258 100644 --- a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt +++ b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt @@ -169,7 +169,7 @@ Here, we will simulate some data to understand causal graphs in the context of S .. code-block:: none - Fitting causal models: 0%| | 0/5 [00:00 + @@ -308,7 +308,7 @@ in the graph. These unobserved confounders are graphically depicted with a bidir .. code-block:: none ['z', 'x'] - The ADMG has confounded-components: [{'y', 'x'}, {'z'}, {'w'}] + The ADMG has confounded-components: [{'x', 'y'}, {'z'}, {'w'}] 'z' is d-separated from 'x': True 'z' is d-separated from 'x' given 'y': False 'z' is d-separated from 'x' after adding a bidirected edge z<->x: False @@ -427,9 +427,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 2.338 seconds) + **Total running time of the script:** (0 minutes 2.298 seconds) -**Estimated memory usage:** 246 MB +**Estimated memory usage:** 249 MB .. _sphx_glr_download_auto_examples_intro_intro_causal_graphs.py: diff --git a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt index 66e87179..ae0b5de1 100644 --- a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:04.774** total execution time for 3 files **from auto_examples/intro**: +**00:04.293** total execution time for 3 files **from auto_examples/intro**: .. container:: @@ -33,11 +33,11 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``intro_causal_graphs.py``) - - 00:02.338 - - 246.2 - * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) - - 00:01.248 - - 161.8 + - 00:02.298 + - 249.0 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) - - 00:01.188 - - 163.5 + - 00:01.045 + - 165.4 + * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) + - 00:00.950 + - 164.0 diff --git a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt index b4054423..bb6c69fe 100644 --- a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt +++ b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt @@ -154,7 +154,7 @@ Mixed Edge Graph Properties MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types is directed: False because there are directed edges. False ['directed', 'bidirected'] - {'directed': , 'bidirected': } + {'directed': , 'bidirected': } @@ -194,7 +194,7 @@ Mixed Edge Graph Operations on Nodes .. code-block:: none - MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['Y', 'Z', 'X'] + MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['X', 'Y', 'Z'] Graph has node A: False Now graph has node A: True Graph has node A: False @@ -312,9 +312,9 @@ class properties. Moreover, one can specify the edge type. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.460 seconds) + **Total running time of the script:** (0 minutes 1.148 seconds) -**Estimated memory usage:** 168 MB +**Estimated memory usage:** 171 MB .. _sphx_glr_download_auto_examples_mixededge_plot_mixed_edge_graph.py: diff --git a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt index 4c474bc2..0f22b4f0 100644 --- a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.460** total execution time for 1 file **from auto_examples/mixededge**: +**00:01.148** total execution time for 1 file **from auto_examples/mixededge**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``plot_mixed_edge_graph.py``) - - 00:01.460 - - 168.1 + - 00:01.148 + - 170.5 diff --git a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt index f005541e..e173e83d 100644 --- a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt +++ b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt @@ -139,9 +139,9 @@ such as `Dagitty `_. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.458 seconds) + **Total running time of the script:** (0 minutes 0.399 seconds) -**Estimated memory usage:** 162 MB +**Estimated memory usage:** 164 MB .. _sphx_glr_download_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py: diff --git a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt index 227164ab..525f8e1f 100644 --- a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt +++ b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt @@ -136,9 +136,9 @@ which creates a nice default layout for time-series graphs. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.147 seconds) + **Total running time of the script:** (0 minutes 0.959 seconds) -**Estimated memory usage:** 162 MB +**Estimated memory usage:** 164 MB .. _sphx_glr_download_auto_examples_visualization_plot_timeseries_graphs.py: diff --git a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt index f8b95ba9..870dacb4 100644 --- a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.605** total execution time for 2 files **from auto_examples/visualization**: +**00:01.358** total execution time for 2 files **from auto_examples/visualization**: .. container:: @@ -33,8 +33,8 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``plot_timeseries_graphs.py``) - - 00:01.147 - - 161.8 + - 00:00.959 + - 164.0 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``draw_and_compare_graphs_with_same_layout.py``) - - 00:00.458 - - 161.8 + - 00:00.399 + - 164.0 diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt index f408f4fd..cd285e76 100644 --- a/dev/_sources/sg_execution_times.rst.txt +++ b/dev/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:07.839** total execution time for 6 files **from all galleries**: +**00:06.798** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``../examples/intro/intro_causal_graphs.py``) - - 00:02.338 - - 246.2 + - 00:02.298 + - 249.0 * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``../examples/mixededge/plot_mixed_edge_graph.py``) - - 00:01.460 - - 168.1 - * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) - - 00:01.248 - - 161.8 + - 00:01.148 + - 170.5 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) - - 00:01.188 - - 163.5 + - 00:01.045 + - 165.4 * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``../examples/visualization/plot_timeseries_graphs.py``) - - 00:01.147 - - 161.8 + - 00:00.959 + - 164.0 + * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) + - 00:00.950 + - 164.0 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``../examples/visualization/draw_and_compare_graphs_with_same_layout.py``) - - 00:00.458 - - 161.8 + - 00:00.399 + - 164.0 diff --git a/dev/auto_examples/intro/checking_validity_of_a_pag.html b/dev/auto_examples/intro/checking_validity_of_a_pag.html index ecf57574..fee637d8 100644 --- a/dev/auto_examples/intro/checking_validity_of_a_pag.html +++ b/dev/auto_examples/intro/checking_validity_of_a_pag.html @@ -533,7 +533,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'I', 'L', 'S', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x793544621e10>, included_edges=<networkx.classes.graph.Graph object at 0x793544622510>, excluded_edges=<networkx.classes.graph.Graph object at 0x793544622950>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'S', 'PSH', 'G', 'L', 'I'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7398463e5950>, included_edges=<networkx.classes.graph.Graph object at 0x7398463e6050>, excluded_edges=<networkx.classes.graph.Graph object at 0x7398463e6490>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 True
@@ -552,7 +552,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'I', 'L', 'S', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x793544635f10>, included_edges=<networkx.classes.graph.Graph object at 0x793544636610>, excluded_edges=<networkx.classes.graph.Graph object at 0x793544636a50>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'S', 'PSH', 'G', 'L', 'I'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7398463f9d90>, included_edges=<networkx.classes.graph.Graph object at 0x7398463fa490>, excluded_edges=<networkx.classes.graph.Graph object at 0x7398463fa8d0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 False
@@ -568,8 +568,8 @@

ReferencesTotal running time of the script: (0 minutes 1.188 seconds)

-

Estimated memory usage: 164 MB

+

Total running time of the script: (0 minutes 1.045 seconds)

+

Estimated memory usage: 165 MB