You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
python /media/drive12TB1/projects/software/mixer/mixer/precimed/mixer_figures.py
one
--json results_mixer/EUR_ancestry_subjects_results_maf_0.01_univariate_mixer_qc_noMHC.fit.json
--out images/EUR_ancestry_subjects_results_maf_0.01_univariate_mixer_qc_noMHC.fit
--statistic mean std
The power plot is blank and throws a warning.
The *power.csv file has results that look valid.
This error has something to do with
matplotlib
precimed/mixer/figures.py:339: UserWarning: FixedFormatter should only be used together with FixedLocator
plt.gca().set_xticklabels(labels=['10K', '100K', '1M', '10M', '100M'])
precimed/mixer/figures.py:342: UserWarning: FixedFormatter should only be used together with FixedLocator
plt.axes().set_yticklabels(labels=['0', '20', '40', '60', '80', '100'])
I added some code to set the tick positions but they just overlay and leave the old positions in there.
The text was updated successfully, but these errors were encountered:
Hi there,
I encountered the same issue today. The plotting script throws the same warning and returns a blank plot, although the trait1_trait2_trait3.fit.power.csv data looks perfectly fine.
Hope someone has a solution to the issue!
python /media/drive12TB1/projects/software/mixer/mixer/precimed/mixer_figures.py
one
--json results_mixer/EUR_ancestry_subjects_results_maf_0.01_univariate_mixer_qc_noMHC.fit.json
--out images/EUR_ancestry_subjects_results_maf_0.01_univariate_mixer_qc_noMHC.fit
--statistic mean std
The power plot is blank and throws a warning.
The *power.csv file has results that look valid.
This error has something to do with
matplotlib
precimed/mixer/figures.py:339: UserWarning: FixedFormatter should only be used together with FixedLocator
plt.gca().set_xticklabels(labels=['10K', '100K', '1M', '10M', '100M'])
precimed/mixer/figures.py:342: UserWarning: FixedFormatter should only be used together with FixedLocator
plt.axes().set_yticklabels(labels=['0', '20', '40', '60', '80', '100'])
I added some code to set the tick positions but they just overlay and leave the old positions in there.
The text was updated successfully, but these errors were encountered: