diff --git a/.github/workflows/deploy_pypi.yml b/.github/workflows/deploy_pypi.yml
index 3668459b..2a5f405c 100644
--- a/.github/workflows/deploy_pypi.yml
+++ b/.github/workflows/deploy_pypi.yml
@@ -13,7 +13,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v2
         with:
-          python-version: 3.7
+          python-version: 3.8
 
       - name: Set up Poetry
         run: |
diff --git a/.github/workflows/unit-tests.yml b/.github/workflows/unit-tests.yml
index 6135ee18..7ab8b56c 100644
--- a/.github/workflows/unit-tests.yml
+++ b/.github/workflows/unit-tests.yml
@@ -12,7 +12,7 @@ jobs:
     - name: Set up Python for linting, formatting, type checking
       uses: actions/setup-python@v2
       with:
-        python-version: '3.6'
+        python-version: '3.8'
     - name: Set up Poetry for linting, formatting, type checking
       run: |
         pip install poetry
@@ -21,7 +21,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: .venv
-        key: venv-lint-python3.6-${{ hashFiles('**/poetry.lock') }}
+        key: venv-lint-python3.8-${{ hashFiles('**/poetry.lock') }}
     - name: Install dependencies
       run: poetry install -E linting --no-dev
     - name: Lint with flake8
@@ -43,7 +43,7 @@ jobs:
     - name: Set up Python for testing
       uses: actions/setup-python@v2
       with:
-        python-version: '3.6'
+        python-version: '3.8'
     - name: Set up Poetry for testing
       run: |
         pip install poetry
@@ -52,7 +52,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: .venv
-        key: venv-python3.6-${{ hashFiles('**/poetry.lock') }}
+        key: venv-python3.8-${{ hashFiles('**/poetry.lock') }}
     - name: Install dependencies
       run: poetry install
     - name: Unit Test with pytest
@@ -71,7 +71,7 @@ jobs:
     - name: Set up Python for testing
       uses: actions/setup-python@v2
       with:
-        python-version: '3.6'
+        python-version: '3.8'
     - name: Set up Poetry for testing
       run: |
         pip install poetry
@@ -80,7 +80,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: .venv
-        key: venv-python3.6-${{ hashFiles('**/poetry.lock') }}
+        key: venv-python3.8-${{ hashFiles('**/poetry.lock') }}
     - name: Install dependencies
       run: poetry install
     - name: Integration Test with pytest
@@ -99,7 +99,7 @@ jobs:
     - name: Set up Python for testing
       uses: actions/setup-python@v2
       with:
-        python-version: '3.6'
+        python-version: '3.8'
     - name: Set up Poetry for testing
       run: |
         pip install poetry
@@ -136,7 +136,7 @@ jobs:
     - name: Set up pypy for testing
       uses: actions/setup-python@v2
       with:
-        python-version: pypy-3.6
+        python-version: pypy-3.8
     - name: Set up Poetry for testing
       run: |
         pip install poetry
@@ -145,7 +145,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: .venv
-        key: venv-pypy3.6-${{ hashFiles('**/poetry.lock') }}
+        key: venv-pypy3.8-${{ hashFiles('**/poetry.lock') }}
     - name: Install dependencies
       run: poetry install --no-dev
 
diff --git a/poetry.lock b/poetry.lock
index 4127c042..4afcce2c 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,11 +1,3 @@
-[[package]]
-name = "appdirs"
-version = "1.4.4"
-description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-category = "main"
-optional = true
-python-versions = "*"
-
 [[package]]
 name = "astunparse"
 version = "1.6.3"
@@ -16,10 +8,11 @@ python-versions = "*"
 
 [package.dependencies]
 six = ">=1.6.1,<2.0"
+wheel = ">=0.23.0,<1.0"
 
 [[package]]
 name = "atomicwrites"
-version = "1.4.0"
+version = "1.4.1"
 description = "Atomic file writes."
 category = "dev"
 optional = false
@@ -27,96 +20,73 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "attrs"
-version = "21.2.0"
+version = "22.2.0"
 description = "Classes Without Boilerplate"
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.6"
 
 [package.extras]
-dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"]
-docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
-tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"]
-tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"]
+cov = ["attrs[tests]", "coverage-enable-subprocess", "coverage[toml] (>=5.3)"]
+dev = ["attrs[docs,tests]"]
+docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope.interface"]
+tests = ["attrs[tests-no-zope]", "zope.interface"]
+tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=0.971,<0.990)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+tests_no_zope = ["cloudpickle", "hypothesis", "mypy (>=0.971,<0.990)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
 
 [[package]]
 name = "black"
-version = "20.8b1"
+version = "23.1.0"
 description = "The uncompromising code formatter."
 category = "main"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
-appdirs = "*"
-click = ">=7.1.2"
-dataclasses = {version = ">=0.6", markers = "python_version < \"3.7\""}
+click = ">=8.0.0"
 mypy-extensions = ">=0.4.3"
-pathspec = ">=0.6,<1"
-regex = ">=2020.1.8"
-toml = ">=0.10.1"
-typed-ast = ">=1.4.0"
-typing-extensions = ">=3.7.4"
+packaging = ">=22.0"
+pathspec = ">=0.9.0"
+platformdirs = ">=2"
+tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
+typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
 colorama = ["colorama (>=0.4.3)"]
-d = ["aiohttp (>=3.3.2)", "aiohttp-cors"]
-
-[[package]]
-name = "cached-property"
-version = "1.5.2"
-description = "A decorator for caching properties in classes."
-category = "main"
-optional = true
-python-versions = "*"
+d = ["aiohttp (>=3.7.4)"]
+jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
+uvloop = ["uvloop (>=0.15.2)"]
 
 [[package]]
 name = "click"
-version = "8.0.3"
+version = "8.1.3"
 description = "Composable command line interface toolkit"
 category = "main"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 colorama = {version = "*", markers = "platform_system == \"Windows\""}
-importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
 
 [[package]]
 name = "colorama"
-version = "0.4.4"
+version = "0.4.6"
 description = "Cross-platform colored terminal text."
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 
 [[package]]
 name = "coverage"
-version = "6.2"
+version = "7.1.0"
 description = "Code coverage measurement for Python"
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.extras]
 toml = ["tomli"]
 
-[[package]]
-name = "dataclasses"
-version = "0.8"
-description = "A backport of the dataclasses module for Python 3.6"
-category = "main"
-optional = true
-python-versions = ">=3.6, <3.7"
-
-[[package]]
-name = "decorator"
-version = "4.4.2"
-description = "Decorators for Humans"
-category = "main"
-optional = false
-python-versions = ">=2.6, !=3.0.*, !=3.1.*"
-
 [[package]]
 name = "flake8"
 version = "3.9.2"
@@ -126,14 +96,13 @@ optional = true
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
 [package.dependencies]
-importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
 mccabe = ">=0.6.0,<0.7.0"
 pycodestyle = ">=2.7.0,<2.8.0"
 pyflakes = ">=2.3.0,<2.4.0"
 
 [[package]]
 name = "ghp-import"
-version = "2.0.2"
+version = "2.1.0"
 description = "Copy your docs directly to the gh-pages branch."
 category = "main"
 optional = true
@@ -143,40 +112,39 @@ python-versions = "*"
 python-dateutil = ">=2.8.1"
 
 [package.extras]
-dev = ["twine", "markdown", "flake8", "wheel"]
+dev = ["flake8", "markdown", "twine", "wheel"]
 
 [[package]]
 name = "importlib-metadata"
-version = "4.8.2"
+version = "6.0.0"
 description = "Read metadata from Python packages"
 category = "main"
-optional = false
-python-versions = ">=3.6"
+optional = true
+python-versions = ">=3.7"
 
 [package.dependencies]
-typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""}
 zipp = ">=0.5"
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
+docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 perf = ["ipython"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"]
+testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
 
 [[package]]
 name = "iniconfig"
-version = "1.1.1"
-description = "iniconfig: brain-dead simple config-ini parsing"
+version = "2.0.0"
+description = "brain-dead simple config-ini parsing"
 category = "dev"
 optional = false
-python-versions = "*"
+python-versions = ">=3.7"
 
 [[package]]
-name = "jinja2"
-version = "3.0.3"
+name = "Jinja2"
+version = "3.1.2"
 description = "A very fast and expressive template engine."
 category = "main"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 MarkupSafe = ">=2.0"
@@ -185,12 +153,12 @@ MarkupSafe = ">=2.0"
 i18n = ["Babel (>=2.7)"]
 
 [[package]]
-name = "markdown"
-version = "3.3.6"
+name = "Markdown"
+version = "3.4.1"
 description = "Python implementation of Markdown."
 category = "main"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
@@ -199,12 +167,12 @@ importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
 testing = ["coverage", "pyyaml"]
 
 [[package]]
-name = "markupsafe"
-version = "2.0.1"
+name = "MarkupSafe"
+version = "2.1.2"
 description = "Safely add untrusted strings to HTML/XML markup."
 category = "main"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "mccabe"
@@ -224,7 +192,7 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "mkdocs"
-version = "1.2.3"
+version = "1.3.0"
 description = "Project documentation with Markdown."
 category = "main"
 optional = true
@@ -233,8 +201,8 @@ python-versions = ">=3.6"
 [package.dependencies]
 click = ">=3.3"
 ghp-import = ">=1.0"
-importlib-metadata = ">=3.10"
-Jinja2 = ">=2.10.1"
+importlib-metadata = ">=4.3"
+Jinja2 = ">=2.10.2"
 Markdown = ">=3.2.1"
 mergedeep = ">=1.3.4"
 packaging = ">=20.5"
@@ -274,11 +242,11 @@ pymdown-extensions = ">=7.0"
 
 [[package]]
 name = "mkdocs-material-extensions"
-version = "1.0.3"
-description = "Extension pack for Python Markdown."
+version = "1.1.1"
+description = "Extension pack for Python Markdown and MkDocs Material."
 category = "main"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "mkdocstrings"
@@ -299,27 +267,30 @@ pytkdocs = ">=0.2.0,<0.12.0"
 
 [[package]]
 name = "mypy"
-version = "0.812"
+version = "1.0.0"
 description = "Optional static typing for Python"
 category = "main"
 optional = true
-python-versions = ">=3.5"
+python-versions = ">=3.7"
 
 [package.dependencies]
-mypy-extensions = ">=0.4.3,<0.5.0"
-typed-ast = ">=1.4.0,<1.5.0"
-typing-extensions = ">=3.7.4"
+mypy-extensions = ">=0.4.3"
+tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
+typing-extensions = ">=3.10"
 
 [package.extras]
 dmypy = ["psutil (>=4.0)"]
+install-types = ["pip"]
+python2 = ["typed-ast (>=1.4.0,<2)"]
+reports = ["lxml"]
 
 [[package]]
 name = "mypy-extensions"
-version = "0.4.3"
-description = "Experimental type system extensions for programs checked with the mypy typechecker."
+version = "1.0.0"
+description = "Type system extensions for programs checked with the mypy type checker."
 category = "main"
 optional = true
-python-versions = "*"
+python-versions = ">=3.5"
 
 [[package]]
 name = "nanoid"
@@ -331,35 +302,26 @@ python-versions = "*"
 
 [[package]]
 name = "networkx"
-version = "2.5.1"
+version = "2.8.8"
 description = "Python package for creating and manipulating graphs and networks"
 category = "main"
 optional = false
-python-versions = ">=3.6"
-
-[package.dependencies]
-decorator = ">=4.3,<5"
+python-versions = ">=3.8"
 
 [package.extras]
-all = ["numpy", "scipy", "pandas", "matplotlib", "pygraphviz", "pydot", "pyyaml", "lxml", "pytest"]
-gdal = ["gdal"]
-lxml = ["lxml"]
-matplotlib = ["matplotlib"]
-numpy = ["numpy"]
-pandas = ["pandas"]
-pydot = ["pydot"]
-pygraphviz = ["pygraphviz"]
-pytest = ["pytest"]
-pyyaml = ["pyyaml"]
-scipy = ["scipy"]
+default = ["matplotlib (>=3.4)", "numpy (>=1.19)", "pandas (>=1.3)", "scipy (>=1.8)"]
+developer = ["mypy (>=0.982)", "pre-commit (>=2.20)"]
+doc = ["nb2plots (>=0.6)", "numpydoc (>=1.5)", "pillow (>=9.2)", "pydata-sphinx-theme (>=0.11)", "sphinx (>=5.2)", "sphinx-gallery (>=0.11)", "texext (>=0.6.6)"]
+extra = ["lxml (>=4.6)", "pydot (>=1.4.2)", "pygraphviz (>=1.9)", "sympy (>=1.10)"]
+test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"]
 
 [[package]]
 name = "numpy"
-version = "1.19.5"
-description = "NumPy is the fundamental package for array computing with Python."
+version = "1.24.2"
+description = "Fundamental package for array computing in Python"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 
 [[package]]
 name = "oyaml"
@@ -374,14 +336,11 @@ pyyaml = "*"
 
 [[package]]
 name = "packaging"
-version = "21.3"
+version = "23.0"
 description = "Core utilities for Python packages"
 category = "main"
 optional = false
-python-versions = ">=3.6"
-
-[package.dependencies]
-pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
+python-versions = ">=3.7"
 
 [[package]]
 name = "paraml"
@@ -396,11 +355,23 @@ oyaml = ">=1.0,<2.0"
 
 [[package]]
 name = "pathspec"
-version = "0.9.0"
+version = "0.11.0"
 description = "Utility library for gitignore style pattern matching of file paths."
 category = "main"
 optional = true
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
+python-versions = ">=3.7"
+
+[[package]]
+name = "platformdirs"
+version = "3.0.0"
+description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
+category = "main"
+optional = true
+python-versions = ">=3.7"
+
+[package.extras]
+docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx (>=6.1.3)", "sphinx-autodoc-typehints (>=1.22,!=1.23.4)"]
+test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest (>=7.2.1)", "pytest-cov (>=4)", "pytest-mock (>=3.10)"]
 
 [[package]]
 name = "pluggy"
@@ -410,9 +381,6 @@ category = "dev"
 optional = false
 python-versions = ">=3.6"
 
-[package.dependencies]
-importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""}
-
 [package.extras]
 dev = ["pre-commit", "tox"]
 testing = ["pytest", "pytest-benchmark"]
@@ -442,12 +410,15 @@ optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
-name = "pygments"
-version = "2.10.0"
+name = "Pygments"
+version = "2.14.0"
 description = "Pygments is a syntax highlighting package written in Python."
 category = "main"
 optional = true
-python-versions = ">=3.5"
+python-versions = ">=3.6"
+
+[package.extras]
+plugins = ["importlib-metadata"]
 
 [[package]]
 name = "pymdown-extensions"
@@ -460,17 +431,6 @@ python-versions = ">=3.6"
 [package.dependencies]
 Markdown = ">=3.2"
 
-[[package]]
-name = "pyparsing"
-version = "3.0.6"
-description = "Python parsing module"
-category = "main"
-optional = false
-python-versions = ">=3.6"
-
-[package.extras]
-diagrams = ["jinja2", "railroad-diagrams"]
-
 [[package]]
 name = "pytest"
 version = "6.2.5"
@@ -483,7 +443,6 @@ python-versions = ">=3.6"
 atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""}
 attrs = ">=19.2.0"
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
-importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""}
 iniconfig = "*"
 packaging = "*"
 pluggy = ">=0.12,<2.0"
@@ -507,7 +466,7 @@ pytest = ">=4.6"
 toml = "*"
 
 [package.extras]
-testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"]
+testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtualenv"]
 
 [[package]]
 name = "python-dateutil"
@@ -522,23 +481,20 @@ six = ">=1.5"
 
 [[package]]
 name = "pytkdocs"
-version = "0.11.0"
+version = "0.11.1"
 description = "Load Python objects documentation."
 category = "main"
 optional = true
-python-versions = ">=3.6,<4.0"
+python-versions = ">=3.6.1,<4.0.0"
 
 [package.dependencies]
 astunparse = {version = ">=1.6.3,<2.0.0", markers = "python_version < \"3.9\""}
-cached-property = {version = ">=1.5.2,<2.0.0", markers = "python_version < \"3.8\""}
-dataclasses = {version = ">=0.7,<0.9", markers = "python_version == \"3.6\""}
-typing-extensions = {version = ">=3.7.4.3,<4.0.0.0", markers = "python_version < \"3.8\""}
 
 [package.extras]
 numpy-style = ["docstring_parser (>=0.7.3,<0.8.0)"]
 
 [[package]]
-name = "pyyaml"
+name = "PyYAML"
 version = "6.0"
 description = "YAML parser and emitter for Python"
 category = "main"
@@ -546,7 +502,7 @@ optional = false
 python-versions = ">=3.6"
 
 [[package]]
-name = "pyyaml-env-tag"
+name = "pyyaml_env_tag"
 version = "0.1"
 description = "A custom YAML tag for referencing environment variables in YAML files. "
 category = "main"
@@ -556,14 +512,6 @@ python-versions = ">=3.6"
 [package.dependencies]
 pyyaml = "*"
 
-[[package]]
-name = "regex"
-version = "2021.11.10"
-description = "Alternative regular expression module, to replace re."
-category = "main"
-optional = true
-python-versions = "*"
-
 [[package]]
 name = "six"
 version = "1.16.0"
@@ -576,29 +524,29 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 name = "toml"
 version = "0.10.2"
 description = "Python Library for Tom's Obvious, Minimal Language"
-category = "main"
+category = "dev"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 
 [[package]]
-name = "typed-ast"
-version = "1.4.3"
-description = "a fork of Python 2 and 3 ast modules with type comment support"
+name = "tomli"
+version = "2.0.1"
+description = "A lil' TOML parser"
 category = "main"
 optional = true
-python-versions = "*"
+python-versions = ">=3.7"
 
 [[package]]
 name = "typing-extensions"
-version = "3.10.0.2"
-description = "Backported and Experimental Type Hints for Python 3.5+"
+version = "4.5.0"
+description = "Backported and Experimental Type Hints for Python 3.7+"
 category = "main"
-optional = false
-python-versions = "*"
+optional = true
+python-versions = ">=3.7"
 
 [[package]]
 name = "watchdog"
-version = "2.1.6"
+version = "2.2.1"
 description = "Filesystem events monitoring"
 category = "main"
 optional = true
@@ -607,17 +555,28 @@ python-versions = ">=3.6"
 [package.extras]
 watchmedo = ["PyYAML (>=3.10)"]
 
+[[package]]
+name = "wheel"
+version = "0.38.4"
+description = "A built-package format for Python"
+category = "main"
+optional = true
+python-versions = ">=3.7"
+
+[package.extras]
+test = ["pytest (>=3.0.0)"]
+
 [[package]]
 name = "zipp"
-version = "3.6.0"
+version = "3.13.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 category = "main"
-optional = false
-python-versions = ">=3.6"
+optional = true
+python-versions = ">=3.7"
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
-testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy"]
+docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["flake8 (<5)", "func-timeout", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
 
 [extras]
 docs = ["mkdocs", "mkdocs-material", "mkdocstrings"]
@@ -625,192 +584,184 @@ linting = ["black", "flake8", "mypy"]
 
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+python-versions = "^3.8"
+content-hash = "aa9c0440f65f4b3ac2f56f39e586442e2e54098a702b1087630a0831a03d5a78"
 
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+]
+wheel = [
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+    {file = "wheel-0.38.4.tar.gz", hash = "sha256:965f5259b566725405b05e7cf774052044b1ed30119b5d586b2703aafe8719ac"},
 ]
 zipp = [
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-    {file = "zipp-3.6.0.tar.gz", hash = "sha256:71c644c5369f4a6e07636f0aa966270449561fcea2e3d6747b8d23efaa9d7832"},
+    {file = "zipp-3.13.0-py3-none-any.whl", hash = "sha256:e8b2a36ea17df80ffe9e2c4fda3f693c3dad6df1697d3cd3af232db680950b0b"},
+    {file = "zipp-3.13.0.tar.gz", hash = "sha256:23f70e964bc11a34cef175bc90ba2914e1e4545ea1e3e2f67c079671883f9cb6"},
 ]
diff --git a/pyproject.toml b/pyproject.toml
index 49192653..9a56a416 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "titan-model"
-version = "3.2.0"
+version = "3.2.1"
 description = "TITAN Agent Based Model"
 license = "GPL-3.0-only"
 authors = ["Sam Bessey <sam_bessey@brown.edu>", "Mary McGrath <mary_mcgrath@brown.edu>"]
@@ -12,14 +12,14 @@ classifiers = ["Operating System :: OS Independent"]
 packages = [{ include = "titan" }]
 
 [tool.poetry.dependencies]
-python = "^3.6"
+python = "^3.8"
 paraml= "^0.1"
 networkx = "^2.4"
 nanoid = "^2.0"
-numpy = "^1.18"
-black = {version = "^20.8b1", optional = true}
+numpy = "^1.23"
+black = {version = "^23.1.0", optional = true}
 flake8 = {version = "^3.8", optional = true}
-mypy = {version = "^0.812", optional = true}
+mypy = {version = "^1.0.0", optional = true}
 mkdocs = {version = "^1.1", optional = true}
 mkdocs-material = {version = "^7.0", optional = true}
 mkdocstrings = {version = "^0.15.0", optional = true}
diff --git a/tests/conftest.py b/tests/conftest.py
index 9f7d7ecb..8d8249cb 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -9,6 +9,7 @@
 from titan.agent import Agent, Relationship
 from titan.location import Location
 
+
 # helper method to generate a fake number deterministically
 class FakeRandom:
     def __init__(self, num: float, fake_choice: int = 0):
diff --git a/tests/exposures/knowledge_test.py b/tests/exposures/knowledge_test.py
index 93f6eb11..6b262db2 100644
--- a/tests/exposures/knowledge_test.py
+++ b/tests/exposures/knowledge_test.py
@@ -89,7 +89,6 @@ def test_knowledge_influence(make_model, make_agent):
 
 @pytest.mark.unit
 def test_knowledge_exposure(make_model, make_agent, params):
-
     # test update all agents for knowledge
     params.exposures.knowledge = True
     params.knowledge.prob = 0.0
diff --git a/tests/integration_test.py b/tests/integration_test.py
index 760f65c8..eb37b43f 100644
--- a/tests/integration_test.py
+++ b/tests/integration_test.py
@@ -13,6 +13,7 @@
 from titan.model import TITAN
 from titan.run_titan import script_init
 
+
 # overwrite
 @pytest.fixture
 def params_integration(tmpdir):
diff --git a/titan/exposures/base_exposure.py b/titan/exposures/base_exposure.py
index c42db438..b0459951 100644
--- a/titan/exposures/base_exposure.py
+++ b/titan/exposures/base_exposure.py
@@ -6,7 +6,6 @@
 
 
 class BaseExposure:
-
     name: str = ""
     """Name of exposure in the params file.  Also used to name the attribute in Agent"""
 
diff --git a/titan/exposures/hiv.py b/titan/exposures/hiv.py
index ce53de1e..84679790 100644
--- a/titan/exposures/hiv.py
+++ b/titan/exposures/hiv.py
@@ -8,7 +8,6 @@
 
 
 class HIV(base_exposure.BaseExposure):
-
     name: str = "hiv"
     stats: List[str] = ["hiv", "hiv_dx", "hiv_aids", "hiv_new", "hiv_dx_new"]
     """
diff --git a/titan/exposures/knowledge.py b/titan/exposures/knowledge.py
index abc3a8a5..b464e517 100644
--- a/titan/exposures/knowledge.py
+++ b/titan/exposures/knowledge.py
@@ -11,7 +11,6 @@
 
 
 class Knowledge(base_exposure.BaseExposure):
-
     name: str = "knowledge"
     stats: List[str] = ["knowledge_aware"]
     """
diff --git a/titan/exposures/monkeypox.py b/titan/exposures/monkeypox.py
index 230fd843..ae1d42ae 100644
--- a/titan/exposures/monkeypox.py
+++ b/titan/exposures/monkeypox.py
@@ -8,7 +8,6 @@
 
 
 class MonkeyPox(base_exposure.BaseExposure):
-
     name: str = "monkeypox"
     stats: List[str] = [
         "monkeypox",
diff --git a/titan/features/external_exposure.py b/titan/features/external_exposure.py
index 3f3d24ec..b0bf0f27 100644
--- a/titan/features/external_exposure.py
+++ b/titan/features/external_exposure.py
@@ -5,7 +5,6 @@
 
 
 class ExternalExposure(base_feature.BaseFeature):
-
     name = "external_exposure"
 
     def __init__(self, agent: "agent.Agent"):
diff --git a/titan/features/high_risk.py b/titan/features/high_risk.py
index 7277904d..8ce14054 100644
--- a/titan/features/high_risk.py
+++ b/titan/features/high_risk.py
@@ -11,7 +11,6 @@
 
 
 class HighRisk(base_feature.BaseFeature):
-
     name = "high_risk"
     stats = [
         "high_risk_new",
@@ -76,7 +75,6 @@ def update_agent(self, model: "model.TITAN"):
 
             # incarcerated last step, evaluate agent's partners for high risk
             elif self.agent.incar.time == model.time - 1:  # type: ignore[attr-defined]
-
                 # put partners in high risk
                 for partner in self.agent.get_partners(
                     self.agent.location.params.high_risk.partnership_types
@@ -130,7 +128,7 @@ def set_stats(self, stats: Dict[str, int], time: int):
     # ============== HELPER METHODS ================
 
     def become_high_risk(
-        self, pop: "population.Population", time: int, duration: int = None
+        self, pop: "population.Population", time: int, duration: Optional[int] = None
     ):
         """
         Mark an agent as high risk and assign a duration to their high risk period
diff --git a/titan/features/incar.py b/titan/features/incar.py
index a4a6ee40..3f705956 100644
--- a/titan/features/incar.py
+++ b/titan/features/incar.py
@@ -8,7 +8,6 @@
 
 
 class Incar(base_feature.BaseFeature):
-
     name = "incar"
     stats = ["incar", "incar_hiv", "new_release", "new_release_hiv"]
     """
diff --git a/titan/features/partner_tracing.py b/titan/features/partner_tracing.py
index 5194d3f0..2f1ac74e 100644
--- a/titan/features/partner_tracing.py
+++ b/titan/features/partner_tracing.py
@@ -4,7 +4,6 @@
 
 
 class PartnerTracing(base_feature.BaseFeature):
-
     name = "partner_tracing"
 
     def __init__(self, agent: "agent.Agent"):
diff --git a/titan/features/prep.py b/titan/features/prep.py
index 6ff569c7..b4ba8574 100644
--- a/titan/features/prep.py
+++ b/titan/features/prep.py
@@ -11,7 +11,6 @@
 
 
 class Prep(base_feature.BaseFeature):
-
     name = "prep"
     stats = ["prep", "prep_new", "prep_injectable", "prep_oral"]
     """
diff --git a/titan/features/random_trial.py b/titan/features/random_trial.py
index 7928f10e..707560ff 100644
--- a/titan/features/random_trial.py
+++ b/titan/features/random_trial.py
@@ -9,7 +9,6 @@
 
 
 class RandomTrial(base_feature.BaseFeature):
-
     name = "random_trial"
     stats = [
         "random_trial",
diff --git a/titan/features/syringe_services.py b/titan/features/syringe_services.py
index 89ca25ea..fda212fe 100644
--- a/titan/features/syringe_services.py
+++ b/titan/features/syringe_services.py
@@ -6,7 +6,6 @@
 
 
 class SyringeServices(base_feature.BaseFeature):
-
     name = "syringe_services"
 
     enrolled_risk = 0.0
diff --git a/titan/features/vaccine.py b/titan/features/vaccine.py
index 0a41c6a3..b880ce15 100644
--- a/titan/features/vaccine.py
+++ b/titan/features/vaccine.py
@@ -9,7 +9,6 @@
 
 
 class Vaccine(base_feature.BaseFeature):
-
     name = "vaccine"
     stats = ["vaccine"]
     """
diff --git a/titan/interactions/base_interaction.py b/titan/interactions/base_interaction.py
index 23d14c65..ca01dda5 100644
--- a/titan/interactions/base_interaction.py
+++ b/titan/interactions/base_interaction.py
@@ -3,7 +3,6 @@
 
 
 class BaseInteraction:
-
     name: str = ""
     """Name of interaction in the params file."""
 
diff --git a/titan/interactions/injection.py b/titan/interactions/injection.py
index 909ae7a5..c3ba5fd9 100644
--- a/titan/interactions/injection.py
+++ b/titan/interactions/injection.py
@@ -6,7 +6,6 @@
 
 
 class Injection(base_interaction.BaseInteraction):
-
     name = "injection"
 
     @classmethod
diff --git a/titan/interactions/pca.py b/titan/interactions/pca.py
index 908784d7..f4a5301e 100644
--- a/titan/interactions/pca.py
+++ b/titan/interactions/pca.py
@@ -5,7 +5,6 @@
 
 
 class PCA(base_interaction.BaseInteraction):
-
     name = "pca"
 
     @classmethod
diff --git a/titan/interactions/sex.py b/titan/interactions/sex.py
index dc0a25f8..edc76c95 100644
--- a/titan/interactions/sex.py
+++ b/titan/interactions/sex.py
@@ -5,7 +5,6 @@
 
 
 class Sex(base_interaction.BaseInteraction):
-
     name = "sex"
 
     @classmethod
diff --git a/titan/location.py b/titan/location.py
index 9f6fdbae..89d50837 100644
--- a/titan/location.py
+++ b/titan/location.py
@@ -129,7 +129,6 @@ def add_weight(d, v, w):
 # * how will mobility be implemented?
 # * assorting?
 class LocationEdge:
-
     next_edge_id = 0
 
     @classmethod
diff --git a/titan/model.py b/titan/model.py
index 57aa2c0d..e70ad942 100644
--- a/titan/model.py
+++ b/titan/model.py
@@ -192,9 +192,9 @@ def step(self, outdir: str):
             "  STARTING HIV count:{}  Total Incarcerated:{}  HR+:{}  "
             "PrEP:{}".format(
                 len(exposures.HIV.agents),
-                sum([1 for a in self.pop.all_agents if a.incar.active]),  # type: ignore[attr-defined]
-                sum([1 for a in self.pop.all_agents if a.high_risk.active]),  # type: ignore[attr-defined]
-                sum([1 for a in self.pop.all_agents if a.prep.active]),  # type: ignore[attr-defined]
+                sum([1 for a in self.pop.all_agents if a.incar.active]),  # type: ignore[misc, attr-defined]
+                sum([1 for a in self.pop.all_agents if a.high_risk.active]),  # type: ignore[misc, attr-defined]
+                sum([1 for a in self.pop.all_agents if a.prep.active]),  # type: ignore[misc, attr-defined]
             )
         )
 
diff --git a/titan/output.py b/titan/output.py
index 15f876a9..0c7e9ed4 100644
--- a/titan/output.py
+++ b/titan/output.py
@@ -301,7 +301,7 @@ def print_components(
             "\tdensity\tEffectiveSize\tdeg_cent\n"
         )
 
-    for (id, comp) in enumerate(components):
+    for id, comp in enumerate(components):
         num_nodes = comp.number_of_nodes()
 
         average_size = effective_size(comp) / num_nodes
diff --git a/titan/population.py b/titan/population.py
index b0cbeed0..8845fa31 100644
--- a/titan/population.py
+++ b/titan/population.py
@@ -411,7 +411,6 @@ def update_partner_assignments(self, t: int):
             while eligible_agents:
                 agent = eligible_agents.popleft()
                 if len(agent.partners[bond]) < agent.target_partners[bond]:
-
                     # no match
                     if self.update_agent_partners(agent, bond, network_components):
                         attempts[agent] += 1
diff --git a/titan/utils.py b/titan/utils.py
index fc35d929..757efdf5 100644
--- a/titan/utils.py
+++ b/titan/utils.py
@@ -391,7 +391,7 @@ def grid_file_to_edges(file_path: str, diagonal_neighbors: bool = False) -> Dict
                     add_edge(edges, loc, grid[i + 1][j - 1])
 
     res = {}
-    for (i, edge) in enumerate(edges):
+    for i, edge in enumerate(edges):
         res[f"edge_{i+1}"] = {"location_1": edge[0], "location_2": edge[1]}
 
     return res