DESCRIPTION

Package: ascend
Type: Package
Title: ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression
Version: 0.99.69
Author: c(person("Anne", "Senabouth", email = "a.senabouth@garvan.org.au", rol = "aut, cre"), person("Quan", "Nguygen", email = "quan.nguyen@imb.uq.edu.au", rol = "aut"))
Maintainer: Anne Senabouth <a.senabouth@garvan.org.au>
Description: Provides a series of tools for cleaning, normalisation and analysis of data produced by single cell experiments.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Imports: 
    utils,
    stats,
    fields,
    grDevices,
    graphics,
    ggplot2,
    ggbeeswarm,
    RColorBrewer,
    gridExtra,
    dynamicTreeCut,
    dendextend,
    data.table,
    reshape2,
    dplyr,
    tidyr,
    MASS,
    BiocGenerics,
    umap,
    Rtsne,
    irlba,
    fastcluster,
    Rcpp,
    RcppArmadillo
Suggests: 
    scater,
    scran,
    Seurat,
    scone,
    devtools,
    knitr,
    locfit,    
    rmarkdown,
    testthat,
    KernSmooth,
    DESeq,
    DESeq2,
    sctransform
VignetteBuilder: knitr
Depends: R (>= 3.6.0),
    methods,
    Matrix,
    S4Vectors,
    SummarizedExperiment,
    SingleCellExperiment,
    BiocParallel
Collate: 
    'RcppExports.R'
    'ascend.R'
    'ascend_DESeq.R'
    'ascend_DESeq2.R'
    'ascend_confoundingfactors.R'
    'ascend_objects.R'
    'ascend_getters.R'
    'ascend_setters.R'
    'ascend_methods.R'
    'ascend_cellranger.R'
    'ascend_dimreduction.R'
    'ascend_clustering.R'
    'ascend_diffexpression.R'
    'ascend_filtering.R'
    'ascend_imports.R'
    'ascend_normalisation.R'
    'ascend_plots.R'
    'ascend_scran.R'
    'ascend_sctransform.R'
    'ascend_subsetters.R'
    'ascend_utilities.R'
    'data.R'
biocViews: Software, 
    WorkflowStep, 
    Preprocessing, 
    QualityControl, 
    Normalization,
    BatchEffect,
    GeneExpression,
    SingleCell,
    DifferentialExpression
LinkingTo:
    Rcpp,
    RcppArmadillo