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    FjdT;K>LG1SLb{>JVO62i(dC&;MY@huna(_y)+tEWkSZO~*2zd$ zkt)*Zx=*K9OOKayUUf#I^Qkk^HBIB` z)Ml~%w=}J|t;zA~H;vuzXgdG9rl)^sI(Sc0zKNz36mZu_2E%-9id` zthQegOL(QLptx2x*Pbp4~-89|IuIaZNngTsFdFL|8-W5Ln zOHWVJbC@+Kw=4ZTZQHjs{j%#*IgeeX`}jYDgL$br3TVF<-kOg1Xqr-3(*s|V?3Uk* zk1JJ~d;U~X+X|G@)Uu4Gs%0}$ymiFi`O~@yMV;TIRLNx**gk$h4wrO0ao_j>V`KRA zmS)wcl+%|rH07wNsb3vUiF7)d)SX2N4pTePP*an}ngYMjw7R)TcH7z$I$n|GtO}JKswl-zmgv+Dle6%n7Xw6Eb*GMhK5S4b`TY3s~^ znu07%OQSW7jM0>JgrFGr!%x5T46T~Z z$#&M9SfYTmrO(o~klEbtRLhCe{iLndTy0yy$&R)rMii8`bIICPb3XUGIey|0UupY5 z=K;x!+}Fu%y_QUTTS(e+Ez-7Oob18dCyw@#wi=7IZ5b!~zqE;0UFlnL`S`^0<(u+z zd9?yHYc#z;YPMEwDbjPK*iEL@ZvJxO!5~?q|5mM^%E|WgpLD^u=@Ij398G5~$muBA z_G&tXl)O*Pk4{dIy7fpy>HGxih+VVJq#Gq=X+iYA8>u>sG(AnN9j#GXA0ll%s@D9N zNp`o0NmD)ZnEwwAvmTzLPkHjpqRxX0>J+s-q9!GH6g4f@S^8r#{|_nNdQ1Nx8lD^< I-@D@f0p#9^7ytkO diff --git a/.doctrees/nbsphinx/tutorial/capsul_tutorial.ipynb b/.doctrees/nbsphinx/tutorial/capsul_tutorial.ipynb index bae5a414..231a3482 100644 --- a/.doctrees/nbsphinx/tutorial/capsul_tutorial.ipynb +++ b/.doctrees/nbsphinx/tutorial/capsul_tutorial.ipynb @@ -53,10 +53,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.396802Z", - "iopub.status.busy": "2024-04-02T08:26:28.396603Z", - "iopub.status.idle": "2024-04-02T08:26:28.404629Z", - "shell.execute_reply": "2024-04-02T08:26:28.403995Z" + "iopub.execute_input": "2024-04-11T14:17:33.931959Z", + "iopub.status.busy": "2024-04-11T14:17:33.931752Z", + "iopub.status.idle": "2024-04-11T14:17:33.939817Z", + "shell.execute_reply": "2024-04-11T14:17:33.939204Z" } }, "outputs": [], @@ -82,10 +82,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.407244Z", - "iopub.status.busy": "2024-04-02T08:26:28.406738Z", - "iopub.status.idle": "2024-04-02T08:26:28.411015Z", - "shell.execute_reply": "2024-04-02T08:26:28.410367Z" + "iopub.execute_input": "2024-04-11T14:17:33.942200Z", + "iopub.status.busy": "2024-04-11T14:17:33.942003Z", + "iopub.status.idle": "2024-04-11T14:17:33.946227Z", + "shell.execute_reply": "2024-04-11T14:17:33.945620Z" } }, "outputs": [ @@ -124,10 +124,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.448896Z", - "iopub.status.busy": "2024-04-02T08:26:28.448458Z", - "iopub.status.idle": "2024-04-02T08:26:28.693232Z", - "shell.execute_reply": "2024-04-02T08:26:28.692623Z" + "iopub.execute_input": "2024-04-11T14:17:33.983489Z", + "iopub.status.busy": "2024-04-11T14:17:33.982861Z", + "iopub.status.idle": "2024-04-11T14:17:34.227309Z", + "shell.execute_reply": "2024-04-11T14:17:34.226706Z" } }, "outputs": [ @@ -185,10 +185,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.695913Z", - "iopub.status.busy": "2024-04-02T08:26:28.695466Z", - "iopub.status.idle": "2024-04-02T08:26:28.699944Z", - "shell.execute_reply": "2024-04-02T08:26:28.699403Z" + "iopub.execute_input": "2024-04-11T14:17:34.229865Z", + "iopub.status.busy": "2024-04-11T14:17:34.229616Z", + "iopub.status.idle": "2024-04-11T14:17:34.233808Z", + "shell.execute_reply": "2024-04-11T14:17:34.233315Z" } }, "outputs": [], @@ -226,10 +226,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.702496Z", - "iopub.status.busy": "2024-04-02T08:26:28.702124Z", - "iopub.status.idle": "2024-04-02T08:26:28.705617Z", - "shell.execute_reply": "2024-04-02T08:26:28.705036Z" + "iopub.execute_input": "2024-04-11T14:17:34.236342Z", + "iopub.status.busy": "2024-04-11T14:17:34.235965Z", + "iopub.status.idle": "2024-04-11T14:17:34.239382Z", + "shell.execute_reply": "2024-04-11T14:17:34.238740Z" } }, "outputs": [], @@ -268,10 +268,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.708046Z", - "iopub.status.busy": "2024-04-02T08:26:28.707671Z", - "iopub.status.idle": "2024-04-02T08:26:28.711289Z", - "shell.execute_reply": "2024-04-02T08:26:28.710606Z" + "iopub.execute_input": "2024-04-11T14:17:34.241930Z", + "iopub.status.busy": "2024-04-11T14:17:34.241513Z", + "iopub.status.idle": "2024-04-11T14:17:34.245014Z", + "shell.execute_reply": "2024-04-11T14:17:34.244451Z" } }, "outputs": [], @@ -299,10 +299,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.713592Z", - "iopub.status.busy": "2024-04-02T08:26:28.713396Z", - "iopub.status.idle": "2024-04-02T08:26:28.717911Z", - "shell.execute_reply": "2024-04-02T08:26:28.717297Z" + "iopub.execute_input": "2024-04-11T14:17:34.247539Z", + "iopub.status.busy": "2024-04-11T14:17:34.247165Z", + "iopub.status.idle": "2024-04-11T14:17:34.251724Z", + "shell.execute_reply": "2024-04-11T14:17:34.251065Z" } }, "outputs": [ @@ -340,10 +340,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.720214Z", - "iopub.status.busy": "2024-04-02T08:26:28.720021Z", - "iopub.status.idle": "2024-04-02T08:26:28.724434Z", - "shell.execute_reply": "2024-04-02T08:26:28.723892Z" + "iopub.execute_input": "2024-04-11T14:17:34.254196Z", + "iopub.status.busy": "2024-04-11T14:17:34.253815Z", + "iopub.status.idle": "2024-04-11T14:17:34.258279Z", + "shell.execute_reply": "2024-04-11T14:17:34.257743Z" } }, "outputs": [], @@ -386,10 +386,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.726695Z", - "iopub.status.busy": "2024-04-02T08:26:28.726476Z", - "iopub.status.idle": "2024-04-02T08:26:28.733372Z", - "shell.execute_reply": "2024-04-02T08:26:28.732753Z" + "iopub.execute_input": "2024-04-11T14:17:34.260588Z", + "iopub.status.busy": "2024-04-11T14:17:34.260386Z", + "iopub.status.idle": "2024-04-11T14:17:34.267352Z", + "shell.execute_reply": "2024-04-11T14:17:34.266773Z" } }, "outputs": [], @@ -425,10 +425,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.735801Z", - "iopub.status.busy": "2024-04-02T08:26:28.735446Z", - "iopub.status.idle": "2024-04-02T08:26:28.739821Z", - "shell.execute_reply": "2024-04-02T08:26:28.739183Z" + "iopub.execute_input": "2024-04-11T14:17:34.269623Z", + "iopub.status.busy": "2024-04-11T14:17:34.269423Z", + "iopub.status.idle": "2024-04-11T14:17:34.273807Z", + "shell.execute_reply": "2024-04-11T14:17:34.273266Z" } }, "outputs": [], @@ -478,10 +478,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.742255Z", - "iopub.status.busy": "2024-04-02T08:26:28.741875Z", - "iopub.status.idle": "2024-04-02T08:26:28.745562Z", - "shell.execute_reply": "2024-04-02T08:26:28.745026Z" + "iopub.execute_input": "2024-04-11T14:17:34.276289Z", + "iopub.status.busy": "2024-04-11T14:17:34.275932Z", + "iopub.status.idle": "2024-04-11T14:17:34.279581Z", + "shell.execute_reply": "2024-04-11T14:17:34.279050Z" } }, "outputs": [], @@ -517,10 +517,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.747939Z", - "iopub.status.busy": "2024-04-02T08:26:28.747738Z", - "iopub.status.idle": "2024-04-02T08:26:28.751371Z", - "shell.execute_reply": "2024-04-02T08:26:28.750794Z" + "iopub.execute_input": "2024-04-11T14:17:34.281803Z", + "iopub.status.busy": "2024-04-11T14:17:34.281606Z", + "iopub.status.idle": "2024-04-11T14:17:34.285315Z", + "shell.execute_reply": "2024-04-11T14:17:34.284780Z" } }, "outputs": [], @@ -545,10 +545,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.753715Z", - "iopub.status.busy": "2024-04-02T08:26:28.753357Z", - "iopub.status.idle": "2024-04-02T08:26:28.759277Z", - "shell.execute_reply": "2024-04-02T08:26:28.758714Z" + "iopub.execute_input": "2024-04-11T14:17:34.287542Z", + "iopub.status.busy": "2024-04-11T14:17:34.287344Z", + "iopub.status.idle": "2024-04-11T14:17:34.293193Z", + "shell.execute_reply": "2024-04-11T14:17:34.292561Z" } }, "outputs": [], @@ -579,10 +579,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.761674Z", - "iopub.status.busy": "2024-04-02T08:26:28.761300Z", - "iopub.status.idle": "2024-04-02T08:26:28.773651Z", - "shell.execute_reply": "2024-04-02T08:26:28.772999Z" + "iopub.execute_input": "2024-04-11T14:17:34.295690Z", + "iopub.status.busy": "2024-04-11T14:17:34.295383Z", + "iopub.status.idle": "2024-04-11T14:17:34.308718Z", + "shell.execute_reply": "2024-04-11T14:17:34.307990Z" } }, "outputs": [ @@ -621,10 +621,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.776386Z", - "iopub.status.busy": "2024-04-02T08:26:28.775980Z", - "iopub.status.idle": "2024-04-02T08:26:28.781098Z", - "shell.execute_reply": "2024-04-02T08:26:28.780585Z" + "iopub.execute_input": "2024-04-11T14:17:34.311531Z", + "iopub.status.busy": "2024-04-11T14:17:34.311310Z", + "iopub.status.idle": "2024-04-11T14:17:34.316731Z", + "shell.execute_reply": "2024-04-11T14:17:34.316121Z" }, "scrolled": false }, @@ -693,10 +693,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.783441Z", - "iopub.status.busy": "2024-04-02T08:26:28.783075Z", - "iopub.status.idle": "2024-04-02T08:26:28.805713Z", - "shell.execute_reply": "2024-04-02T08:26:28.805150Z" + "iopub.execute_input": "2024-04-11T14:17:34.319210Z", + "iopub.status.busy": "2024-04-11T14:17:34.318857Z", + "iopub.status.idle": "2024-04-11T14:17:34.342203Z", + "shell.execute_reply": "2024-04-11T14:17:34.341678Z" } }, "outputs": [ @@ -766,10 +766,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.808340Z", - "iopub.status.busy": "2024-04-02T08:26:28.807961Z", - "iopub.status.idle": "2024-04-02T08:26:28.811799Z", - "shell.execute_reply": "2024-04-02T08:26:28.811205Z" + "iopub.execute_input": "2024-04-11T14:17:34.344616Z", + "iopub.status.busy": "2024-04-11T14:17:34.344413Z", + "iopub.status.idle": "2024-04-11T14:17:34.348317Z", + "shell.execute_reply": "2024-04-11T14:17:34.347805Z" } }, "outputs": [], @@ -813,10 +813,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.814197Z", - "iopub.status.busy": "2024-04-02T08:26:28.813830Z", - "iopub.status.idle": "2024-04-02T08:26:28.817637Z", - "shell.execute_reply": "2024-04-02T08:26:28.817077Z" + "iopub.execute_input": "2024-04-11T14:17:34.350644Z", + "iopub.status.busy": "2024-04-11T14:17:34.350448Z", + "iopub.status.idle": "2024-04-11T14:17:34.354298Z", + "shell.execute_reply": "2024-04-11T14:17:34.353777Z" } }, "outputs": [], @@ -841,10 +841,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.820119Z", - "iopub.status.busy": "2024-04-02T08:26:28.819747Z", - "iopub.status.idle": "2024-04-02T08:26:28.827204Z", - "shell.execute_reply": "2024-04-02T08:26:28.826615Z" + "iopub.execute_input": "2024-04-11T14:17:34.356609Z", + "iopub.status.busy": "2024-04-11T14:17:34.356413Z", + "iopub.status.idle": "2024-04-11T14:17:34.363815Z", + "shell.execute_reply": "2024-04-11T14:17:34.363285Z" } }, "outputs": [], @@ -875,10 +875,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.829645Z", - "iopub.status.busy": "2024-04-02T08:26:28.829262Z", - "iopub.status.idle": "2024-04-02T08:26:28.832729Z", - "shell.execute_reply": "2024-04-02T08:26:28.832143Z" + "iopub.execute_input": "2024-04-11T14:17:34.366223Z", + "iopub.status.busy": "2024-04-11T14:17:34.365844Z", + "iopub.status.idle": "2024-04-11T14:17:34.369418Z", + "shell.execute_reply": "2024-04-11T14:17:34.368886Z" } }, "outputs": [], @@ -899,10 +899,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.835159Z", - "iopub.status.busy": "2024-04-02T08:26:28.834784Z", - "iopub.status.idle": "2024-04-02T08:26:28.846076Z", - "shell.execute_reply": "2024-04-02T08:26:28.845331Z" + "iopub.execute_input": "2024-04-11T14:17:34.371974Z", + "iopub.status.busy": "2024-04-11T14:17:34.371516Z", + "iopub.status.idle": "2024-04-11T14:17:34.382424Z", + "shell.execute_reply": "2024-04-11T14:17:34.381704Z" } }, "outputs": [ @@ -936,10 +936,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.848802Z", - "iopub.status.busy": "2024-04-02T08:26:28.848400Z", - "iopub.status.idle": "2024-04-02T08:26:28.852991Z", - "shell.execute_reply": "2024-04-02T08:26:28.852431Z" + "iopub.execute_input": "2024-04-11T14:17:34.385269Z", + "iopub.status.busy": "2024-04-11T14:17:34.384892Z", + "iopub.status.idle": "2024-04-11T14:17:34.389394Z", + "shell.execute_reply": "2024-04-11T14:17:34.388775Z" } }, "outputs": [ @@ -1083,10 +1083,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.855462Z", - "iopub.status.busy": "2024-04-02T08:26:28.855085Z", - "iopub.status.idle": "2024-04-02T08:26:28.886133Z", - "shell.execute_reply": "2024-04-02T08:26:28.885561Z" + "iopub.execute_input": "2024-04-11T14:17:34.391807Z", + "iopub.status.busy": "2024-04-11T14:17:34.391468Z", + "iopub.status.idle": "2024-04-11T14:17:34.422420Z", + "shell.execute_reply": "2024-04-11T14:17:34.421858Z" } }, "outputs": [ @@ -1157,10 +1157,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.888621Z", - "iopub.status.busy": "2024-04-02T08:26:28.888246Z", - "iopub.status.idle": "2024-04-02T08:26:28.892163Z", - "shell.execute_reply": "2024-04-02T08:26:28.891592Z" + "iopub.execute_input": "2024-04-11T14:17:34.425020Z", + "iopub.status.busy": "2024-04-11T14:17:34.424572Z", + "iopub.status.idle": "2024-04-11T14:17:34.428463Z", + "shell.execute_reply": "2024-04-11T14:17:34.427951Z" } }, "outputs": [], @@ -1200,10 +1200,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.894623Z", - "iopub.status.busy": "2024-04-02T08:26:28.894257Z", - "iopub.status.idle": "2024-04-02T08:26:28.898608Z", - "shell.execute_reply": "2024-04-02T08:26:28.898059Z" + "iopub.execute_input": "2024-04-11T14:17:34.430922Z", + "iopub.status.busy": "2024-04-11T14:17:34.430505Z", + "iopub.status.idle": "2024-04-11T14:17:34.434951Z", + "shell.execute_reply": "2024-04-11T14:17:34.434334Z" } }, "outputs": [], @@ -1240,10 +1240,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.901073Z", - "iopub.status.busy": "2024-04-02T08:26:28.900645Z", - "iopub.status.idle": "2024-04-02T08:26:28.908241Z", - "shell.execute_reply": "2024-04-02T08:26:28.907636Z" + "iopub.execute_input": "2024-04-11T14:17:34.437130Z", + "iopub.status.busy": "2024-04-11T14:17:34.436933Z", + "iopub.status.idle": "2024-04-11T14:17:34.444412Z", + "shell.execute_reply": "2024-04-11T14:17:34.443783Z" } }, "outputs": [], @@ -1291,10 +1291,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.910936Z", - "iopub.status.busy": "2024-04-02T08:26:28.910531Z", - "iopub.status.idle": "2024-04-02T08:26:28.939362Z", - "shell.execute_reply": "2024-04-02T08:26:28.938655Z" + "iopub.execute_input": "2024-04-11T14:17:34.446926Z", + "iopub.status.busy": "2024-04-11T14:17:34.446707Z", + "iopub.status.idle": "2024-04-11T14:17:34.474828Z", + "shell.execute_reply": "2024-04-11T14:17:34.474197Z" } }, "outputs": [ @@ -1332,10 +1332,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.942011Z", - "iopub.status.busy": "2024-04-02T08:26:28.941671Z", - "iopub.status.idle": "2024-04-02T08:26:28.947705Z", - "shell.execute_reply": "2024-04-02T08:26:28.947126Z" + "iopub.execute_input": "2024-04-11T14:17:34.477389Z", + "iopub.status.busy": "2024-04-11T14:17:34.477018Z", + "iopub.status.idle": "2024-04-11T14:17:34.482881Z", + "shell.execute_reply": "2024-04-11T14:17:34.482244Z" } }, "outputs": [], @@ -1377,10 +1377,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.950131Z", - "iopub.status.busy": "2024-04-02T08:26:28.949672Z", - "iopub.status.idle": "2024-04-02T08:26:28.956326Z", - "shell.execute_reply": "2024-04-02T08:26:28.955699Z" + "iopub.execute_input": "2024-04-11T14:17:34.485465Z", + "iopub.status.busy": "2024-04-11T14:17:34.484950Z", + "iopub.status.idle": "2024-04-11T14:17:34.491691Z", + "shell.execute_reply": "2024-04-11T14:17:34.491014Z" } }, "outputs": [], @@ -1413,10 +1413,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.959001Z", - "iopub.status.busy": "2024-04-02T08:26:28.958499Z", - "iopub.status.idle": "2024-04-02T08:26:28.965209Z", - "shell.execute_reply": "2024-04-02T08:26:28.964688Z" + "iopub.execute_input": "2024-04-11T14:17:34.493981Z", + "iopub.status.busy": "2024-04-11T14:17:34.493785Z", + "iopub.status.idle": "2024-04-11T14:17:34.500159Z", + "shell.execute_reply": "2024-04-11T14:17:34.499614Z" } }, "outputs": [ @@ -1449,10 +1449,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.967376Z", - "iopub.status.busy": "2024-04-02T08:26:28.967180Z", - "iopub.status.idle": "2024-04-02T08:26:28.970424Z", - "shell.execute_reply": "2024-04-02T08:26:28.969800Z" + "iopub.execute_input": "2024-04-11T14:17:34.502313Z", + "iopub.status.busy": "2024-04-11T14:17:34.502113Z", + "iopub.status.idle": "2024-04-11T14:17:34.505369Z", + "shell.execute_reply": "2024-04-11T14:17:34.504807Z" } }, "outputs": [], @@ -1480,10 +1480,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.972758Z", - "iopub.status.busy": "2024-04-02T08:26:28.972421Z", - "iopub.status.idle": "2024-04-02T08:26:28.976359Z", - "shell.execute_reply": "2024-04-02T08:26:28.975732Z" + "iopub.execute_input": "2024-04-11T14:17:34.507652Z", + "iopub.status.busy": "2024-04-11T14:17:34.507454Z", + "iopub.status.idle": "2024-04-11T14:17:34.511433Z", + "shell.execute_reply": "2024-04-11T14:17:34.510863Z" } }, "outputs": [], @@ -1507,10 +1507,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.978659Z", - "iopub.status.busy": "2024-04-02T08:26:28.978303Z", - "iopub.status.idle": "2024-04-02T08:26:28.986053Z", - "shell.execute_reply": "2024-04-02T08:26:28.985409Z" + "iopub.execute_input": "2024-04-11T14:17:34.513579Z", + "iopub.status.busy": "2024-04-11T14:17:34.513385Z", + "iopub.status.idle": "2024-04-11T14:17:34.521236Z", + "shell.execute_reply": "2024-04-11T14:17:34.520701Z" } }, "outputs": [], @@ -1543,10 +1543,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.988534Z", - "iopub.status.busy": "2024-04-02T08:26:28.988186Z", - "iopub.status.idle": "2024-04-02T08:26:28.994586Z", - "shell.execute_reply": "2024-04-02T08:26:28.994079Z" + "iopub.execute_input": "2024-04-11T14:17:34.523437Z", + "iopub.status.busy": "2024-04-11T14:17:34.523244Z", + "iopub.status.idle": "2024-04-11T14:17:34.529124Z", + "shell.execute_reply": "2024-04-11T14:17:34.528581Z" } }, "outputs": [ @@ -1574,10 +1574,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.996743Z", - "iopub.status.busy": "2024-04-02T08:26:28.996549Z", - "iopub.status.idle": "2024-04-02T08:26:28.999349Z", - "shell.execute_reply": "2024-04-02T08:26:28.998845Z" + "iopub.execute_input": "2024-04-11T14:17:34.531522Z", + "iopub.status.busy": "2024-04-11T14:17:34.531148Z", + "iopub.status.idle": "2024-04-11T14:17:34.534080Z", + "shell.execute_reply": "2024-04-11T14:17:34.533556Z" } }, "outputs": [], @@ -1594,10 +1594,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.001687Z", - "iopub.status.busy": "2024-04-02T08:26:29.001323Z", - "iopub.status.idle": "2024-04-02T08:26:29.004451Z", - "shell.execute_reply": "2024-04-02T08:26:29.003896Z" + "iopub.execute_input": "2024-04-11T14:17:34.536377Z", + "iopub.status.busy": "2024-04-11T14:17:34.536006Z", + "iopub.status.idle": "2024-04-11T14:17:34.539343Z", + "shell.execute_reply": "2024-04-11T14:17:34.538659Z" } }, "outputs": [], @@ -1613,10 +1613,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.006764Z", - "iopub.status.busy": "2024-04-02T08:26:29.006364Z", - "iopub.status.idle": "2024-04-02T08:26:29.009652Z", - "shell.execute_reply": "2024-04-02T08:26:29.009092Z" + "iopub.execute_input": "2024-04-11T14:17:34.541789Z", + "iopub.status.busy": "2024-04-11T14:17:34.541412Z", + "iopub.status.idle": "2024-04-11T14:17:34.544577Z", + "shell.execute_reply": "2024-04-11T14:17:34.544002Z" } }, "outputs": [], @@ -1647,10 +1647,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.012008Z", - "iopub.status.busy": "2024-04-02T08:26:29.011633Z", - "iopub.status.idle": "2024-04-02T08:26:29.016606Z", - "shell.execute_reply": "2024-04-02T08:26:29.016048Z" + "iopub.execute_input": "2024-04-11T14:17:34.546951Z", + "iopub.status.busy": "2024-04-11T14:17:34.546553Z", + "iopub.status.idle": "2024-04-11T14:17:34.551599Z", + "shell.execute_reply": "2024-04-11T14:17:34.550987Z" } }, "outputs": [ @@ -1676,10 +1676,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.018929Z", - "iopub.status.busy": "2024-04-02T08:26:29.018522Z", - "iopub.status.idle": "2024-04-02T08:26:29.021841Z", - "shell.execute_reply": "2024-04-02T08:26:29.021223Z" + "iopub.execute_input": "2024-04-11T14:17:34.553980Z", + "iopub.status.busy": "2024-04-11T14:17:34.553606Z", + "iopub.status.idle": "2024-04-11T14:17:34.556830Z", + "shell.execute_reply": "2024-04-11T14:17:34.556306Z" } }, "outputs": [], @@ -1732,10 +1732,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.024235Z", - "iopub.status.busy": "2024-04-02T08:26:29.024039Z", - "iopub.status.idle": "2024-04-02T08:26:29.077798Z", - "shell.execute_reply": "2024-04-02T08:26:29.077159Z" + "iopub.execute_input": "2024-04-11T14:17:34.559239Z", + "iopub.status.busy": "2024-04-11T14:17:34.558816Z", + "iopub.status.idle": "2024-04-11T14:17:34.610420Z", + "shell.execute_reply": "2024-04-11T14:17:34.609798Z" } }, "outputs": [ @@ -1767,7 +1767,7 @@ "somaworkflow_config_file : \n", "somaworkflow_keep_failed_workflows : True\n", "somaworkflow_keep_succeeded_workflows : False\n", - "somaworkflow_computing_resources_config : \n", + "somaworkflow_computing_resources_config : \n", "spm_directory : \n", "spm_standalone : \n", "spm_version : \n", @@ -1823,10 +1823,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.080801Z", - "iopub.status.busy": "2024-04-02T08:26:29.080251Z", - "iopub.status.idle": "2024-04-02T08:26:29.103647Z", - "shell.execute_reply": "2024-04-02T08:26:29.102967Z" + "iopub.execute_input": "2024-04-11T14:17:34.613189Z", + "iopub.status.busy": "2024-04-11T14:17:34.612668Z", + "iopub.status.idle": "2024-04-11T14:17:34.634794Z", + "shell.execute_reply": "2024-04-11T14:17:34.634230Z" } }, "outputs": [ @@ -1896,10 +1896,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.106161Z", - "iopub.status.busy": "2024-04-02T08:26:29.105955Z", - "iopub.status.idle": "2024-04-02T08:26:29.118394Z", - "shell.execute_reply": "2024-04-02T08:26:29.117726Z" + "iopub.execute_input": "2024-04-11T14:17:34.637088Z", + "iopub.status.busy": "2024-04-11T14:17:34.636885Z", + "iopub.status.idle": "2024-04-11T14:17:34.649159Z", + "shell.execute_reply": "2024-04-11T14:17:34.648510Z" } }, "outputs": [ @@ -1947,10 +1947,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.121253Z", - "iopub.status.busy": "2024-04-02T08:26:29.120842Z", - "iopub.status.idle": "2024-04-02T08:26:29.127886Z", - "shell.execute_reply": "2024-04-02T08:26:29.127241Z" + "iopub.execute_input": "2024-04-11T14:17:34.651672Z", + "iopub.status.busy": "2024-04-11T14:17:34.651462Z", + "iopub.status.idle": "2024-04-11T14:17:34.658370Z", + "shell.execute_reply": "2024-04-11T14:17:34.657835Z" } }, "outputs": [], @@ -1996,10 +1996,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.130402Z", - "iopub.status.busy": "2024-04-02T08:26:29.129946Z", - "iopub.status.idle": "2024-04-02T08:26:29.145439Z", - "shell.execute_reply": "2024-04-02T08:26:29.144837Z" + "iopub.execute_input": "2024-04-11T14:17:34.660736Z", + "iopub.status.busy": "2024-04-11T14:17:34.660396Z", + "iopub.status.idle": "2024-04-11T14:17:34.675710Z", + "shell.execute_reply": "2024-04-11T14:17:34.675151Z" } }, "outputs": [ @@ -2007,8 +2007,8 @@ "name": "stdout", "output_type": "stream", "text": [ - "jobs: [, ]\n", - "dependencies: {(, )}\n" + "jobs: [, ]\n", + "dependencies: {(, )}\n" ] } ], @@ -2039,10 +2039,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.148109Z", - "iopub.status.busy": "2024-04-02T08:26:29.147737Z", - "iopub.status.idle": "2024-04-02T08:26:32.210048Z", - "shell.execute_reply": "2024-04-02T08:26:32.209374Z" + "iopub.execute_input": "2024-04-11T14:17:34.677905Z", + "iopub.status.busy": "2024-04-11T14:17:34.677698Z", + "iopub.status.idle": "2024-04-11T14:17:37.803426Z", + "shell.execute_reply": "2024-04-11T14:17:37.802699Z" } }, "outputs": [ @@ -2110,10 +2110,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:32.212829Z", - "iopub.status.busy": "2024-04-02T08:26:32.212452Z", - "iopub.status.idle": "2024-04-02T08:26:32.215487Z", - "shell.execute_reply": "2024-04-02T08:26:32.214973Z" + "iopub.execute_input": "2024-04-11T14:17:37.805999Z", + "iopub.status.busy": "2024-04-11T14:17:37.805833Z", + "iopub.status.idle": "2024-04-11T14:17:37.809246Z", + "shell.execute_reply": "2024-04-11T14:17:37.808734Z" } }, "outputs": [], @@ -2141,10 +2141,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:32.217724Z", - "iopub.status.busy": "2024-04-02T08:26:32.217413Z", - "iopub.status.idle": "2024-04-02T08:26:35.273919Z", - "shell.execute_reply": "2024-04-02T08:26:35.273277Z" + "iopub.execute_input": "2024-04-11T14:17:37.811432Z", + "iopub.status.busy": "2024-04-11T14:17:37.811285Z", + "iopub.status.idle": "2024-04-11T14:17:40.863575Z", + "shell.execute_reply": "2024-04-11T14:17:40.862775Z" } }, "outputs": [ @@ -2182,10 +2182,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:35.277140Z", - "iopub.status.busy": "2024-04-02T08:26:35.276768Z", - "iopub.status.idle": "2024-04-02T08:26:38.506888Z", - "shell.execute_reply": "2024-04-02T08:26:38.506225Z" + "iopub.execute_input": "2024-04-11T14:17:40.866567Z", + "iopub.status.busy": "2024-04-11T14:17:40.866385Z", + "iopub.status.idle": "2024-04-11T14:17:44.130646Z", + "shell.execute_reply": "2024-04-11T14:17:44.129982Z" } }, "outputs": [ @@ -2249,10 +2249,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.509567Z", - "iopub.status.busy": "2024-04-02T08:26:38.509391Z", - "iopub.status.idle": "2024-04-02T08:26:38.513258Z", - "shell.execute_reply": "2024-04-02T08:26:38.512631Z" + "iopub.execute_input": "2024-04-11T14:17:44.133531Z", + "iopub.status.busy": "2024-04-11T14:17:44.133140Z", + "iopub.status.idle": "2024-04-11T14:17:44.136972Z", + "shell.execute_reply": "2024-04-11T14:17:44.136327Z" } }, "outputs": [ @@ -2288,10 +2288,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.515459Z", - "iopub.status.busy": "2024-04-02T08:26:38.515311Z", - "iopub.status.idle": "2024-04-02T08:26:38.550751Z", - "shell.execute_reply": "2024-04-02T08:26:38.550177Z" + "iopub.execute_input": "2024-04-11T14:17:44.139687Z", + "iopub.status.busy": "2024-04-11T14:17:44.139204Z", + "iopub.status.idle": "2024-04-11T14:17:44.174220Z", + "shell.execute_reply": "2024-04-11T14:17:44.173685Z" } }, "outputs": [], @@ -2336,10 +2336,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.553592Z", - "iopub.status.busy": "2024-04-02T08:26:38.553388Z", - "iopub.status.idle": "2024-04-02T08:26:38.590940Z", - "shell.execute_reply": "2024-04-02T08:26:38.590290Z" + "iopub.execute_input": "2024-04-11T14:17:44.177074Z", + "iopub.status.busy": "2024-04-11T14:17:44.176764Z", + "iopub.status.idle": "2024-04-11T14:17:44.212853Z", + "shell.execute_reply": "2024-04-11T14:17:44.212186Z" } }, "outputs": [ @@ -2422,10 +2422,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.593480Z", - "iopub.status.busy": "2024-04-02T08:26:38.593320Z", - "iopub.status.idle": "2024-04-02T08:26:38.626599Z", - "shell.execute_reply": "2024-04-02T08:26:38.625953Z" + "iopub.execute_input": "2024-04-11T14:17:44.215622Z", + "iopub.status.busy": "2024-04-11T14:17:44.215155Z", + "iopub.status.idle": "2024-04-11T14:17:44.247191Z", + "shell.execute_reply": "2024-04-11T14:17:44.246613Z" } }, "outputs": [ @@ -2473,10 +2473,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.629148Z", - "iopub.status.busy": "2024-04-02T08:26:38.628984Z", - "iopub.status.idle": "2024-04-02T08:26:38.632286Z", - "shell.execute_reply": "2024-04-02T08:26:38.631763Z" + "iopub.execute_input": "2024-04-11T14:17:44.249879Z", + "iopub.status.busy": "2024-04-11T14:17:44.249467Z", + "iopub.status.idle": "2024-04-11T14:17:44.252572Z", + "shell.execute_reply": "2024-04-11T14:17:44.252048Z" } }, "outputs": [], @@ -2506,10 +2506,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.634720Z", - "iopub.status.busy": "2024-04-02T08:26:38.634389Z", - "iopub.status.idle": "2024-04-02T08:26:38.651036Z", - "shell.execute_reply": "2024-04-02T08:26:38.650365Z" + "iopub.execute_input": "2024-04-11T14:17:44.255145Z", + "iopub.status.busy": "2024-04-11T14:17:44.254742Z", + "iopub.status.idle": "2024-04-11T14:17:44.270925Z", + "shell.execute_reply": "2024-04-11T14:17:44.270304Z" } }, "outputs": [], @@ -2584,10 +2584,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.653874Z", - "iopub.status.busy": "2024-04-02T08:26:38.653514Z", - "iopub.status.idle": "2024-04-02T08:26:38.657323Z", - "shell.execute_reply": "2024-04-02T08:26:38.656734Z" + "iopub.execute_input": "2024-04-11T14:17:44.273489Z", + "iopub.status.busy": "2024-04-11T14:17:44.273054Z", + "iopub.status.idle": "2024-04-11T14:17:44.276560Z", + "shell.execute_reply": "2024-04-11T14:17:44.276068Z" } }, "outputs": [], @@ -2622,10 +2622,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.659919Z", - "iopub.status.busy": "2024-04-02T08:26:38.659569Z", - "iopub.status.idle": "2024-04-02T08:26:38.664945Z", - "shell.execute_reply": "2024-04-02T08:26:38.664444Z" + "iopub.execute_input": "2024-04-11T14:17:44.278921Z", + "iopub.status.busy": "2024-04-11T14:17:44.278572Z", + "iopub.status.idle": "2024-04-11T14:17:44.283757Z", + "shell.execute_reply": "2024-04-11T14:17:44.283143Z" } }, "outputs": [ @@ -2703,10 +2703,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.667395Z", - "iopub.status.busy": "2024-04-02T08:26:38.667054Z", - "iopub.status.idle": "2024-04-02T08:26:38.802238Z", - "shell.execute_reply": "2024-04-02T08:26:38.801545Z" + "iopub.execute_input": "2024-04-11T14:17:44.286142Z", + "iopub.status.busy": "2024-04-11T14:17:44.285751Z", + "iopub.status.idle": "2024-04-11T14:17:44.424375Z", + "shell.execute_reply": "2024-04-11T14:17:44.423719Z" } }, "outputs": [ @@ -2797,10 +2797,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.804975Z", - "iopub.status.busy": "2024-04-02T08:26:38.804806Z", - "iopub.status.idle": "2024-04-02T08:26:38.817671Z", - "shell.execute_reply": "2024-04-02T08:26:38.817092Z" + "iopub.execute_input": "2024-04-11T14:17:44.427228Z", + "iopub.status.busy": "2024-04-11T14:17:44.426871Z", + "iopub.status.idle": "2024-04-11T14:17:44.440124Z", + "shell.execute_reply": "2024-04-11T14:17:44.439620Z" } }, "outputs": [ @@ -2845,10 +2845,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.820390Z", - "iopub.status.busy": "2024-04-02T08:26:38.819974Z", - "iopub.status.idle": "2024-04-02T08:26:38.823303Z", - "shell.execute_reply": "2024-04-02T08:26:38.822802Z" + "iopub.execute_input": "2024-04-11T14:17:44.442570Z", + "iopub.status.busy": "2024-04-11T14:17:44.442243Z", + "iopub.status.idle": "2024-04-11T14:17:44.445577Z", + "shell.execute_reply": "2024-04-11T14:17:44.444915Z" } }, "outputs": [], diff --git a/.doctrees/tutorial/capsul_tutorial.doctree b/.doctrees/tutorial/capsul_tutorial.doctree index aa8e909178b4bd4407c57f521840c63fdd2dd6bf..7727e3bbef61010cde7a3df3d28e324930ed40ac 100644 GIT binary patch delta 592 zcmZ41Ah4`KprM6v3zMfSr@5t>iGihsMbh>)-b_oFwtsVHTFZtrdv-E`f)MN~AQxE{XwlvsOr0=UAQxGd7`@WqfSYc;i)jKM+~)>%Itn(^ z8MiU%!b}Dl#lM@$38uu@9HB%6Nt%)OQK$`?M#o5^fv5Z zGJ$g~r}yk+f&?MRRhH9HWDTb8-NDoeS8RYPON3r&aKKHs-o-S54-{@-pBvceDA-JA z+{UB}H`#JJ|86EHxDrc*5)mYAnzd6h*kh+;*iE0fi^&SE+5n-N2m|3t4BD6MVcNcA I4|9_<0J>|nNB{r; diff --git a/_modules/capsul/process/runprocess.html b/_modules/capsul/process/runprocess.html index 81cd6a62..9d1a66dd 100644 --- a/_modules/capsul/process/runprocess.html +++ b/_modules/capsul/process/runprocess.html @@ -431,6 +431,20 @@

    Source code for capsul.process.runprocess

                           'studyconfig file). If not specified neither on the '
                           'commandline nor study configfile, taken as the same as '
                           'input.')
    +    group1.add_option('--params', dest='paramsfile', default=None,
    +                      help='specify a file containing commandline parameters. '
    +                      'The file will contain arguments for this commandline '
    +                      '(argv): it is an alternative to providing them here. '
    +                      'It can be useful to reuse parameters, or when the '
    +                      'parameters are too long (in a large iteration, '
    +                      'typically). The file syntax is one line per parameter, '
    +                      'with no further parsing. It will be processed after '
    +                      'all the current commanline arguments, not right now as '
    +                      'the argument appears. But if a parameter has already '
    +                      'been set (via commandline), it will not be replaced: '
    +                      'first set arguments have priority. If the params file '
    +                      'itself contains a --params parameter, then another '
    +                      'file will be read afterwards, and so on.')
         parser.add_option_group(group1)
     
         group2 = OptionGroup(parser, 'Processing',
    @@ -515,6 +529,17 @@ 

    Source code for capsul.process.runprocess

         parser.disable_interspersed_args()
         (options, args) = parser.parse_args()
     
    +    while options.paramsfile:
    +        pfile = options.paramsfile
    +        options.paramsfile = None
    +        with open(pfile) as f:
    +            new_argv = [l.strip() for l in f.readlines()]
    +        new_options, new_args = parser.parse_args(new_argv)
    +        for k, v in new_options.__dict__.items():
    +            if not getattr(options, k, None):
    +                setattr(options, k, v)
    +        args += new_args
    +
         if options.config:
             engine = capsul_engine()
             with open(options.config) as f:
    diff --git a/searchindex.js b/searchindex.js
    index aa76291d..db3a3fe5 100644
    --- a/searchindex.js
    +++ b/searchindex.js
    @@ -1 +1 @@
    -Search.setIndex({"docnames": ["api/api", "api/attributes", "api/engine", "api/in_context", "api/index", "api/info", "api/pipeline", "api/plugins", "api/process", "api/qt_apps", "api/qt_gui", "api/sphinxext", "api/study_config", "api/subprocess", "api/utils", "documentation", "index", "installation", "status", "tutorial/capsul_tutorial", "user_guide_tree/advanced_usage", "user_guide_tree/index", "user_guide_tree/xml_spec"], "filenames": ["api/api.rst", "api/attributes.rst", "api/engine.rst", "api/in_context.rst", "api/index.rst", "api/info.rst", "api/pipeline.rst", "api/plugins.rst", "api/process.rst", "api/qt_apps.rst", "api/qt_gui.rst", "api/sphinxext.rst", "api/study_config.rst", "api/subprocess.rst", "api/utils.rst", "documentation.rst", "index.rst", "installation.rst", "status.rst", "tutorial/capsul_tutorial.ipynb", "user_guide_tree/advanced_usage.rst", "user_guide_tree/index.rst", "user_guide_tree/xml_spec.rst"], "titles": ["capsul.api module", "capsul.attributes module", "capsul.engine module", "capsul.in_context module", "CAPSUL programming API documentation", "<no title>", "capsul.pipeline module", "capsul.plugins module", "capsul.process", "capsul.qt_apps module", "capsul.qt_gui module", "capsul.sphinxext module", "capsul.study_config module", "capsul.subprocess module", "capsul.utils module", "Documentation of the CAPSUL tools", "CAPSUL", "CAPSUL installation", "CAPSUL status", "CAPSUL: chain algorithms in pipelines", "Parameters completion", "User Guide", "XML 2.0 specification"], "terms": {"The": [0, 1, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 15, 16, 19, 20, 21], "high": 0, "level": [0, 1, 2, 6, 9, 10, 12, 19, 21, 22], "pre": 0, "import": [0, 1, 2, 3, 6, 8, 11, 12, 19, 20, 21, 22], "main": [0, 3, 6, 10, 11, 12, 15, 21], "object": [0, 1, 2, 3, 6, 8, 10, 12, 19, 22], "from": [0, 1, 2, 3, 6, 8, 9, 10, 11, 12, 13, 16, 17, 19, 21, 22], "sever": [0, 2, 6, 8, 19, 20, 21, 22], "sub": [0, 1, 6, 9, 10, 11, 19, 22], "process": [0, 1, 2, 3, 6, 9, 10, 11, 12, 14, 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"disable-runtime-steps-with-existing-outputs"]], "nodes_with_existing_outputs()": [[6, "nodes-with-existing-outputs"]], "nodes_with_missing_inputs()": [[6, "nodes-with-missing-inputs"]], "where_is_plug_value_from()": [[6, "where-is-plug-value-from"]], "dump_pipeline_state_as_dict()": [[6, "dump-pipeline-state-as-dict"]], "set_pipeline_state_from_dict()": [[6, "set-pipeline-state-from-dict"]], "get_output_directories()": [[6, "get-output-directories"]], "create_output_directories()": [[6, "create-output-directories"]], "save_pipeline()": [[6, "save-pipeline"]], "load_pipeline_parameters()": [[6, "load-pipeline-parameters"]], "save_pipeline_parameters()": [[6, "save-pipeline-parameters"]], "is_node_enabled()": [[6, "is-node-enabled"]], "capsul.pipeline.pipeline_workflow submodule": [[6, "module-capsul.pipeline.pipeline_workflow"]], "workflow_from_pipeline()": [[6, "workflow-from-pipeline"]], "workflow_run()": [[6, "workflow-run"]], "capsul.pipeline.process_iteration submodule": [[6, "module-capsul.pipeline.process_iteration"]], "ProcessIteration": [[6, "processiteration"]], "capsul.pipeline.python_export submodule": [[6, "module-capsul.pipeline.python_export"]], "save_py_pipeline()": [[6, "save-py-pipeline"]], "capsul.pipeline.topological_sort submodule": [[6, "module-capsul.pipeline.topological_sort"]], "GraphNode": [[6, "graphnode"]], "capsul.pipeline.xml submodule": [[6, "module-capsul.pipeline.xml"]], "create_xml_pipeline()": [[6, "create-xml-pipeline"]], "save_xml_pipeline()": [[6, "save-xml-pipeline"]], "capsul.pipeline.custom_nodes submodule": [[6, "module-capsul.pipeline.custom_nodes"]], "capsul.pipeline.custom_nodes.strcat_node": [[6, "module-capsul.pipeline.custom_nodes.strcat_node"]], "StrCatNode": [[6, "strcatnode"]], "capsul.pipeline.custom_nodes.strconv": [[6, "module-capsul.pipeline.custom_nodes.strconv"]], "StrConvNode": [[6, "strconvnode"]], "capsul.pipeline.custom_nodes.cv_node": [[6, "module-capsul.pipeline.custom_nodes.cv_node"]], "CrossValidationFoldNode": [[6, "crossvalidationfoldnode"]], "capsul.pipeline.custom_nodes.loo_node": [[6, "module-capsul.pipeline.custom_nodes.loo_node"]], "LeaveOneOutNode": [[6, "leaveoneoutnode"]], "capsul.pipeline.custom_nodes.map_node": [[6, "module-capsul.pipeline.custom_nodes.map_node"]], "MapNode": [[6, "mapnode"]], "capsul.pipeline.custom_nodes.reduce_node": [[6, "module-capsul.pipeline.custom_nodes.reduce_node"]], "ReduceNode": [[6, "reducenode"]], "capsul.plugins module": [[7, "capsul-plugins-module"]], "capsul.process": [[8, "capsul-process"]], "capsul.process.process submodule": [[8, "module-capsul.process.process"]], "Process": [[8, "process"]], "FileCopyProcess": [[8, "filecopyprocess"]], "InteractiveProcess": [[8, "interactiveprocess"]], "NipypeProcess": [[8, "nipypeprocess"]], "ProcessMeta": [[8, "processmeta"]], "ProcessResult": [[8, "processresult"]], "capsul.process.nipype_process submodule": [[8, "module-capsul.process.nipype_process"]], "nipype_factory()": [[8, "nipype-factory"]], "capsul.process.runprocess submodule": [[8, "module-capsul.process.runprocess"]], "ProcessParamError": [[8, "processparamerror"]], "set_process_param_from_str()": [[8, "set-process-param-from-str"]], "get_process_with_params()": [[8, "get-process-with-params"]], "run_process_with_distribution()": [[8, "run-process-with-distribution"]], "convert_commandline_parameter()": [[8, "convert-commandline-parameter"]], "main()": [[8, "main"]], "capsul.process.xml submodule": [[8, "module-capsul.process.xml"]], "XMLProcess": [[8, "xmlprocess"]], "string_to_value()": [[8, "string-to-value"]], "trait_from_xml()": [[8, "trait-from-xml"]], "create_xml_process()": [[8, "create-xml-process"]], "Decorator": [[8, "decorator"]], "xml_process()": [[8, "xml-process"]], "capsul.qt_apps module": [[9, "capsul-qt-apps-module"]], "capsul.qt_apps.main_window submodule": [[9, "capsul-qt-apps-main-window-submodule"]], "capsul.qt_apps.pipeline_viewer_app submodule": [[9, "capsul-qt-apps-pipeline-viewer-app-submodule"]], "capsul.qt_apps.utils submodule": [[9, "module-capsul.qt_apps.utils"]], "capsul.qt_apps.utils.application submodule": [[9, "module-capsul.qt_apps.utils.application"]], "Application": [[9, "application"]], "EmittingStream": [[9, "emittingstream"]], "capsul.qt_apps.utils.fill_treectrl submodule": [[9, "module-capsul.qt_apps.utils.fill_treectrl"]], "fill_treectrl()": [[9, "fill-treectrl"]], "add_tree_nodes()": [[9, "add-tree-nodes"]], "search_in_menu()": [[9, "search-in-menu"]], "capsul.qt_apps.utils.find_pipelines submodule": [[9, "module-capsul.qt_apps.utils.find_pipelines"]], "find_pipelines_from_description()": [[9, "find-pipelines-from-description"]], "find_pipeline_and_process()": [[9, "find-pipeline-and-process"]], "lists2dict()": [[9, "lists2dict"]], "capsul.qt_apps.utils.window submodule": [[9, "module-capsul.qt_apps.utils.window"]], "MyQUiLoader": [[9, "myquiloader"]], "capsul.qt_gui module": [[10, "capsul-qt-gui-module"]], "capsul.qt_gui.board_widget submodule": [[10, "module-capsul.qt_gui.board_widget"]], "BoardWidget": [[10, "boardwidget"]], "capsul.qt_gui.widgets.activation_inspector submodule": [[10, "module-capsul.qt_gui.widgets.activation_inspector"]], "ActivationInspectorApp": [[10, "activationinspectorapp"]], "ActivationInspector": [[10, "activationinspector"]], "capsul.qt_gui.widgets.attributed_process_widget submodule": [[10, "module-capsul.qt_gui.widgets.attributed_process_widget"]], "AttributedProcessWidget": [[10, "attributedprocesswidget"]], "capsul.qt_gui.widgets.links_debugger submodule": [[10, "module-capsul.qt_gui.widgets.links_debugger"]], "CapsulLinkDebuggerView": [[10, "capsullinkdebuggerview"]], "capsul.qt_gui.widgets.pipeline_developer_view submodule": [[10, "module-capsul.qt_gui.widgets.pipeline_developer_view"]], "ColorType": [[10, "colortype"]], "EmbeddedSubPipelineItem": [[10, "embeddedsubpipelineitem"]], "boxItem": [[10, "boxitem"]], "NodeGWidget": [[10, "nodegwidget"]], "HandleItem": [[10, "handleitem"]], "Link": [[10, "link"]], "PipelineScene": [[10, "pipelinescene"]], "PipelineDeveloperView": [[10, "pipelinedeveloperview"]], "capsul.qt_gui.widgets.pipeline_file_warning_widget submodule": [[10, "module-capsul.qt_gui.widgets.pipeline_file_warning_widget"]], "PipelineFileWarningWidget": [[10, "pipelinefilewarningwidget"]], "capsul.qt_gui.widgets.pipeline_user_view submodule": [[10, "module-capsul.qt_gui.widgets.pipeline_user_view"]], "PipelineUserView": [[10, "pipelineuserview"]], "capsul.qt_gui.widgets.viewer_widget submodule": [[10, "module-capsul.qt_gui.widgets.viewer_widget"]], "ViewerWidget": [[10, "viewerwidget"]], "capsul.sphinxext module": [[11, "capsul-sphinxext-module"]], "Commands": [[11, "commands"]], "capsul.study_config module": [[12, "capsul-study-config-module"]], "capsul.study_config.config_utils submodule": [[12, "module-capsul.study_config.config_utils"]], "environment()": [[12, "environment"]], "capsul.study_config.memory 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"StudyConfigModule": [[12, "studyconfigmodule"]], "default_study_config()": [[12, "default-study-config"]], "capsul.study_config.config_modules submodule": [[12, "capsul-study-config-config-modules-submodule"]], "capsul.study_config.config_modules.attributes_config submodule": [[12, "capsul-study-config-config-modules-attributes-config-submodule"]], "AttributesConfig": [[12, "attributesconfig"]], "capsul.study_config.config_modules.brainvisa_config submodule": [[12, "module-capsul.study_config.config_modules.brainvisa_config"]], "BrainVISAConfig": [[12, "brainvisaconfig"]], "capsul.study_config.config_modules.fom_config submodule": [[12, "module-capsul.study_config.config_modules.fom_config"]], "capsul.study_config.config_modules.freesurfer_config submodule": [[12, "module-capsul.study_config.config_modules.freesurfer_config"]], "FreeSurferConfig": [[12, "freesurferconfig"]], "capsul.study_config.config_modules.fsl_config submodule": [[12, "module-capsul.study_config.config_modules.fsl_config"]], "FSLConfig": [[12, "fslconfig"]], "capsul.study_config.config_modules.matlab_config submodule": [[12, "module-capsul.study_config.config_modules.matlab_config"]], "MatlabConfig": [[12, "matlabconfig"]], "capsul.study_config.config_modules.nipype_config submodule": [[12, "module-capsul.study_config.config_modules.nipype_config"]], "NipypeConfig": [[12, "nipypeconfig"]], "capsul.study_config.config_modules.smartcaching_config submodule": [[12, "module-capsul.study_config.config_modules.smartcaching_config"]], "SmartCachingConfig": [[12, "smartcachingconfig"]], "capsul.study_config.config_modules.somaworkflow_config submodule": [[12, "module-capsul.study_config.config_modules.somaworkflow_config"]], "ResourceController": [[12, "resourcecontroller"]], "SomaWorkflowConfig": [[12, "somaworkflowconfig"]], "capsul.study_config.config_modules.spm_config submodule": [[12, "module-capsul.study_config.config_modules.spm_config"]], "SPMConfig": [[12, "spmconfig"]], "capsul.subprocess module": [[13, "capsul-subprocess-module"]], "capsul.subprocess.fsl submodule": [[13, "module-capsul.subprocess.fsl"]], "Popen": [[13, "popen"], [13, "id2"]], "fsl_command_with_environment()": [[13, "fsl-command-with-environment"]], "check_fsl_configuration()": [[13, "check-fsl-configuration"]], "check_configuration_values()": [[13, "check-configuration-values"], [13, "id4"]], "auto_configuration()": [[13, "auto-configuration"], [13, "id5"]], "call()": [[13, "call"], [13, "id6"]], "check_call()": [[13, "check-call"], [13, "id7"]], "check_output()": [[13, "check-output"], [13, "id8"]], "capsul.subprocess.spm submodule": [[13, "module-capsul.subprocess.spm"]], "find_spm()": [[13, "find-spm"]], "check_spm_configuration()": [[13, "check-spm-configuration"]], "spm_command()": [[13, "spm-command"]], "capsul.utils module": [[14, "capsul-utils-module"]], "find_processes()": [[14, "find-processes"]], "get_tool_version()": [[14, 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exportations": [[19, "Links-and-exportations"]], "Switches": [[19, "Switches"]], "Using the Python API": [[19, "Using-the-Python-API"]], "Iteration over a process or pipeline": [[19, "Iteration-over-a-process-or-pipeline"]], "FOM definition": [[19, "FOM-definition"]], "Now Cleanup the files we have created\u2026": [[19, "Now-Cleanup-the-files-we-have-created..."]], "Parameters completion": [[20, "parameters-completion"]], "Completion model": [[20, "completion-model"]], "Using completion": [[20, "using-completion"]], "Graphical interface": [[20, "graphical-interface"]], "Defining a custom completion system": [[20, "defining-a-custom-completion-system"]], "Path building from attributes": [[20, "path-building-from-attributes"]], "Declaring attributes sets": [[20, "declaring-attributes-sets"]], "Declaring process and parameters attributes": [[20, "declaring-process-and-parameters-attributes"]], "Putting things together": [[20, "putting-things-together"]], "File Organization Model (FOM)": [[20, "file-organization-model-fom"]], "Using FOMs": [[20, "using-foms"]], "Defining FOMs": [[20, "defining-foms"]], "Iterating processing over multiple data": [[20, "iterating-processing-over-multiple-data"]], "User Guide": [[21, "user-guide"]], "Tutorial": [[21, "tutorial"]], "Running Capsul": [[21, "running-capsul"]], "Running as commandline": [[21, "running-as-commandline"]], "XML Specifications": [[21, "xml-specifications"]], "Documenting CAPSUL processes and pipelines with Sphinx": [[21, "documenting-capsul-processes-and-pipelines-with-sphinx"]], "Advanced usage": [[21, "advanced-usage"]], "XML 2.0 specification": [[22, "xml-2-0-specification"]], "Table of content": [[22, "table-of-content"]], "Processes": [[22, "processes"]], "Parameter types": [[22, "parameter-types"]], "Process roles": [[22, "process-roles"]], "Association between a Python function and an XML string": [[22, "association-between-a-python-function-and-an-xml-string"]], "Processes examples": [[22, 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    \ No newline at end of file
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[1, 9, 12, 17], "call": [1, 2, 3, 4, 6, 8, 12, 19, 20, 22], "add_trait": [1, 6, 8, 12, 19], "order": [1, 2, 6, 8, 9, 10, 12, 16, 19, 21, 22], "share": [1, 2, 6, 12, 19, 20], "between": [1, 2, 6, 8, 10, 12, 16, 19], "schema_dict": [1, 20], "base": [1, 2, 4, 6, 8, 9, 10, 12, 16, 17, 20], "manag": [1, 2, 12, 16, 17, 20], "It": [1, 2, 4, 6, 8, 10, 11, 12, 13, 16, 17, 19, 20, 21, 22], "store": [1, 2, 3, 6, 8, 10, 11, 12, 21], "associ": [1, 2, 6, 8, 11, 20], "each": [1, 2, 6, 8, 9, 10, 11, 12, 19, 20, 22], "its": [1, 2, 6, 8, 10, 12, 19, 20, 21, 22], "valu": [1, 2, 6, 8, 10, 12, 14, 18, 19, 20, 22], "global": [1, 2, 6, 8, 12, 19, 22], "whole": [1, 6], "Or": [1, 2], "mai": [1, 2, 6, 8, 10, 12, 13, 17, 19, 20, 21, 22], "individu": [1, 2, 6, 10, 21], "get_parameters_attribut": [1, 20], "To": [1, 2, 3, 6, 8, 12, 19, 21], "programm": [1, 6], "subclass": [1, 2, 6, 8, 12, 19], "some": [1, 2, 3, 6, 8, 9, 10, 17, 19, 22], "should": [1, 2, 6, 8, 10, 12, 19, 20, 21, 22], "regist": [1, 20], "link": [1, 2, 4, 6, 8, 11, 12, 16, 21], "factory_id": [1, 20], "variabl": [1, 2, 3, 6, 8, 10, 12, 13, 19, 20, 22], "see": [1, 2, 4, 6, 10, 12, 19, 21, 22], "advanc": [1, 19], "usag": [1, 4], "doc": [1, 4, 6, 11, 16, 19, 21], "detail": [1, 2, 6], "copi": [1, 6, 8, 22], "with_valu": 1, "true": [1, 2, 3, 6, 8, 9, 10, 11, 12, 14, 19, 20, 21, 22], "overload": [1, 6, 8, 10], "copy_to_singl": 1, "similar": [1, 3, 13, 16, 22], "except": [1, 2, 6, 8, 12, 19, 22], "convert": [1, 6, 8, 9, 11, 19], "list": [1, 2, 6, 8, 9, 10, 11, 12, 19, 20, 22], "singl": [1, 2, 6, 12, 22], "get": [1, 2, 3, 6, 8, 10, 11, 12, 14, 17, 19, 20, 21, 22], "allow": [1, 2, 6, 8, 10, 11, 12, 16, 19, 21, 22], "determin": [1, 2, 6, 8, 10, 19], "path": [1, 2, 3, 6, 8, 9, 10, 11, 12, 13, 19, 21, 22], "mere": [1, 2], "end": [1, 2, 8, 10, 11, 22], "set_parameter_attribut": [1, 20], "editable_attribut": 1, "fixed_attibute_valu": 1, "allow_list": 1, "str": [1, 2, 6, 8, 9, 10, 11, 12, 13, 14, 19, 20], "input": [1, 2, 6, 8, 10, 12, 19, 20], "output": [1, 2, 6, 8, 9, 10, 12, 19, 20], "them": [1, 2, 6, 8, 9, 10, 11, 14, 16, 22], "id": [1, 2, 6, 8, 12, 19], "dict": [1, 6, 8, 9, 10, 11, 12, 14, 19, 20], "non": [1, 2, 6, 8, 10, 12, 19], "edit": [1, 2, 10, 16], "bool": [1, 2, 6, 8, 9, 10, 11, 12, 19], "default": [1, 2, 6, 8, 9, 10, 11, 12, 13, 17, 19, 22], "transform": [1, 6, 12, 18, 20], "instanti": [1, 2, 6, 8, 12, 22], "get_completion_engin": [1, 19, 20], "none": [1, 2, 6, 8, 9, 10, 11, 12, 13, 14, 19, 22], "context": [1, 2, 3, 6, 12, 19, 22], "given": [1, 2, 3, 6, 8, 10, 12, 13, 15, 20, 21, 22], "study_config": [1, 2, 6, 8, 10, 13, 19, 20, 21], "": [1, 2, 6, 8, 10, 12, 19, 22], "fom": [1, 10, 12, 18, 21], "noth": [1, 2, 6, 12], "configur": [1, 2, 3, 6, 8, 12, 13, 14, 16, 19, 20, 21], "return": [1, 2, 3, 6, 8, 9, 10, 11, 12, 13, 14, 18, 19, 20, 22], "abl": [1, 2, 9, 19], "perform": [1, 2, 3, 6, 19, 22], "conform": 1, "api": [1, 2, 8, 11, 12, 15, 20, 21], "deal": [1, 2, 12, 16], "iter": [1, 2, 6, 8, 10, 12, 14, 16, 18, 21, 22], "intern": [1, 2, 6, 8, 10, 12], "machineri": [1, 6], "special": [1, 2, 6, 8, 10, 13, 22], "get_iterated_attribut": 1, "step": [1, 2, 6, 10, 19], "self": [1, 2, 6, 8, 10, 11, 12, 19, 20], "capsul_iteration_step": 1, "complete_iteration_step": 1, "complete_paramet": [1, 6, 20], "process_input": 1, "complete_iter": 1, "file": [1, 2, 3, 6, 8, 9, 10, 11, 12, 16, 21, 22], "includ": [1, 2, 6, 10, 11, 12, 21, 22], "both": [1, 2, 6, 8, 19], "regular": [1, 10], "option": [1, 2, 6, 8, 9, 10, 11, 12, 16, 19, 20, 21, 22], "dictionari": [1, 2, 6, 8, 9, 12, 14, 19, 20, 22], "under": [1, 6, 16], "kei": [1, 2, 6, 8, 9, 11, 12, 14, 19, 20, 22], "capsul_attribut": 1, "fals": [1, 2, 6, 8, 9, 10, 11, 12, 19, 22], "insid": [1, 2, 6, 10, 11, 12, 19, 20, 22], "run": [1, 3, 6, 8, 10, 11, 13, 16, 19, 20, 22], "own": [1, 2, 6, 8, 12], "thu": [1, 2, 6, 8, 12, 16, 19], "correctli": [1, 8, 21], "howev": [1, 6, 8, 10, 16, 22], "2": [1, 2, 6, 8, 10, 16, 17, 19, 20], "advantag": [1, 19], "1": [1, 2, 6, 10, 12, 19, 20, 22], "prevent": [1, 6, 10, 12], "modif": [1, 2], "do": [1, 2, 6, 8, 10, 11, 12, 19], "anywai": [1, 6, 10], "done": [1, 2, 3, 6, 8, 12, 13, 19, 20, 21], "again": [1, 6, 19], "when": [1, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 19, 20, 22], "build": [1, 2, 6, 8, 10, 11, 12, 16, 17, 19, 22], "workflow": [1, 2, 6, 8, 10, 12, 16, 18, 19, 20, 21], "pipeline_workflow": [1, 2, 4, 19], "workflow_from_pipelin": [1, 4, 19], "get_attribute_valu": [1, 19, 20], "type": [1, 2, 6, 8, 9, 10, 11, 12, 13, 14, 19, 20], "get_induced_iterative_paramet": 1, "over": [1, 2, 6, 8, 14, 16], "trigger": [1, 6, 10], "through": [1, 2, 6, 8, 9, 10, 12, 19, 20, 21], "impli": 1, "other": [1, 2, 6, 8, 11, 22], "also": [1, 2, 4, 6, 8, 9, 12, 17, 19, 20, 22], "vari": 1, "ex": [1, 6, 8, 20, 21], "chang": [1, 2, 6, 8, 10, 12, 19, 20], "induc": 1, "give": [1, 17, 19, 22], "implement": [1, 2, 6, 8, 12, 20], "specif": [1, 2, 3, 6, 8, 10, 12, 13, 19], "allowed_extens": [1, 22], "possibl": [1, 2, 6, 8, 10, 12, 19, 20, 21, 22], "extens": [1, 6, 11, 22], "allowed_format": 1, "format": [1, 2, 6, 8, 11, 12, 19, 20, 21, 22], "attributes_to_path": [1, 20], "data": [1, 2, 10, 12, 19, 21], "organ": [1, 2, 6, 9, 12, 19, 21], "deleg": [1, 6], "engin": [1, 3, 6, 10, 12, 19, 21], "note": [1, 2, 6, 8, 11, 12, 19, 20], "assign": [1, 2, 6, 8, 10, 19, 20], "perman": 1, "print": [1, 2, 6, 8, 11, 12, 19, 22], "specific_process_attribut": 1, "onc": [1, 2, 6, 8, 20], "have": [1, 2, 6, 8, 9, 10, 12, 20, 21, 22], "up": [1, 6, 10, 12, 19, 20], "install_auto_complet": [1, 19], "least": [1, 13, 19, 21], "provid": [1, 2, 3, 6, 8, 10, 12, 13, 16, 21], "correct": 1, "model": [1, 2, 12, 19], "set_paramet": [1, 8], "get_path_completion_engin": [1, 20], "remove_auto_complet": 1, "attributes_chang": [1, 20], "obj": [1, 12], "old": [1, 6, 22], "new": [1, 2, 3, 4, 6, 8, 10, 12, 13, 17, 21, 22], "callback": [1, 6, 10, 12, 20], "updat": [1, 2, 6, 8, 10, 12], "basic": [1, 6, 8, 9, 11, 16], "after": [1, 6, 8, 12, 19, 20, 21], "check": [1, 2, 6, 8, 10, 12, 13, 14, 19], "normal": [1, 2, 3, 6, 8, 9, 22], "been": [1, 2, 6, 8, 10, 12, 13, 17, 19, 22], "doe": [1, 2, 6, 8, 12, 16, 19, 21, 22], "merg": [1, 12], "children": [1, 6, 22], "static": [1, 2, 6, 8, 12], "queri": [1, 2, 8], "overrid": 1, "monitor": [1, 12, 16], "influenc": [1, 2, 12], "recomput": 1, "nodes_selection_chang": 1, "remove_attribut": 1, "clear": [1, 12], "cach": [1, 12, 19], "rebuild": 1, "gener": [1, 2, 4, 6, 8, 11, 12, 19, 20, 21, 22], "attach": [1, 6, 8, 19, 22], "remov": [1, 2, 6, 8, 10, 11, 12, 19], "auto": [1, 19, 20, 21], "revert": 1, "remove_switch_observ": 1, "notif": [1, 20], "previous": [1, 2, 6], "listen": 1, "state": [1, 2, 6, 10, 19], "underli": [1, 6, 10], "quit": 1, "incomplet": 1, "specisl": 1, "propag": [1, 6, 10, 19], "select": [1, 2, 6, 8, 10, 12, 13, 19, 22], "correspond": [1, 2, 6, 8, 12, 14, 21, 22], "thei": [1, 2, 6, 8, 12, 16, 19, 20, 21, 22], "retriev": [1, 2, 12], "otherwis": [1, 2, 6, 8, 9, 10, 11, 12, 19, 22], "countrari": 1, "tri": 1, 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12, 17, 19, 20, 21, 22], "execut": [2, 3, 6, 8, 9, 10, 11, 12, 13, 16, 18, 19, 22], "mandatori": [2, 3, 6, 8, 9, 10, 11, 12, 14, 16, 19, 22], "Such": [2, 6, 12], "database_loc": 2, "config": [2, 6, 8, 12, 19, 20, 21], "entri": [2, 6], "point": [2, 21, 22], "softwar": [2, 3, 12, 13, 16, 19, 21, 22], "metadata": [2, 6], "environ": [2, 3, 6, 8, 13, 16, 19, 22], "possibli": [2, 6], "remot": [2, 8, 12, 16, 19, 21, 22], "must": [2, 3, 6, 8, 11, 12, 13, 19, 20, 21, 22], "For": [2, 3, 6, 8, 9, 12, 13, 17, 19, 20, 22], "ce": [2, 3, 8, 19], "necessari": [2, 8, 17, 19, 22], "modifi": [2, 6, 8, 10, 12, 19, 22], "appli": [2, 10, 12], "nipyp": [2, 8, 10, 11, 12, 14, 16, 19], "explicitli": [2, 6, 19, 22], "activ": [2, 3, 6, 10, 20, 22], "follow": [2, 6, 10, 12, 13, 17, 19, 21, 22], "code": [2, 6, 8, 10, 11, 12, 22], "here": [2, 6, 9, 12, 19, 22], "select_configur": 2, "ani": [2, 3, 6, 8, 9, 10, 11, 13, 16, 19, 21, 22], "replac": [2, 4, 6, 8, 11, 12, 13, 19, 21, 22], "older": [2, 21], "still": [2, 4, 6, 8, 13, 16, 22], "present": [2, 6, 8, 19], "backward": [2, 10], "compat": [2, 6, 12, 16, 19, 22], "disappear": 2, "later": [2, 6, 8], "version": [2, 6, 8, 12, 13, 14, 17, 19, 22], "exist": [2, 6, 8, 10, 11, 12, 19, 20, 22], "synchron": 2, "mean": [2, 6, 10, 11, 19, 22], "wai": [2, 3, 6, 8, 12, 19, 22], "item": [2, 6, 9, 12, 22], "vice": 2, "versa": 2, "move": [2, 8, 10], "being": [2, 6], "wrapper": [2, 4, 8, 10], "independ": [2, 16, 20, 22], "ax": [2, 10], "addit": [2, 6, 8, 9, 12, 19, 21, 22], "typic": [2, 6, 8, 12, 22], "repres": [2, 6, 8, 10, 19, 22], "comput": [2, 6, 8, 12, 16, 21, 22], "resourc": [2, 6, 8, 12, 16], "connect": [2, 6, 8, 10, 12, 16, 19, 22], "server": [2, 21], "differ": [2, 6, 8, 9, 12, 19, 20, 21], "client": [2, 12, 19], "one": [2, 6, 8, 10, 11, 12, 17, 19, 21, 22], "avail": [2, 6, 10, 12, 20, 21, 22], "extern": [2, 3, 6, 12, 19, 21], "etc": [2, 3, 6, 10, 12, 19, 20, 21], "so": [2, 6, 10, 12, 19], "section": [2, 4, 8, 9, 10, 19], "split": [2, 6, 9], "As": [2, 6, 19, 22], "littl": 2, "bit": [2, 6, 8], "complex": [2, 16], "first": [2, 3, 6, 8, 12, 13, 19], "what": [2, 6, 19], "maintain": 2, "common": [2, 16], "work": [2, 6, 8, 12, 13, 15, 16, 19, 20, 21, 22], "local": [2, 8, 12, 16, 19, 21], "machin": [2, 8, 19], "especi": 2, "who": 2, "either": [2, 6, 8, 10, 12, 16, 17, 19, 21, 22], "persist": [2, 12], "found": [2, 9, 10, 12, 14, 19, 21], "occur": 2, "session": 2, "block": [2, 6, 19, 22], "global_config": 2, "whenev": [2, 6], "ad": [2, 3, 6, 9, 10, 11, 13, 19, 22], "oper": [2, 6, 12], "runtim": [2, 6, 8], "ones": [2, 6, 8, 16, 22], "requir": [2, 6, 8, 12, 17, 19, 20, 22], "request": [2, 6, 8], "element": [2, 3, 6, 8, 9, 12, 13, 19, 20], "per": [2, 22], "amongst": [2, 6, 19], "dedic": 2, "topic": 2, "add": [2, 6, 8, 9, 10, 11, 12, 19, 22], "tabl": [2, 8], "program": [2, 8, 12, 15, 16, 21], "come": [2, 6], "predefin": 2, "constructor": [2, 6, 8, 9, 10, 12], "instead": [2, 6, 8, 12, 17], "computing_resourc": 2, "connected_to": 2, "detailed_inform": 2, "execution_id": 2, "big": 2, "inform": [2, 6, 8, 12, 14, 19, 22], "about": [2, 6, 8, 21, 22], "disconnect": [2, 6, 12, 22], "dispos": 2, "condit": 2, "current": [2, 6, 8, 9, 10, 12, 16, 19], "free": [2, 8, 16], "somaworkflow": 2, "keep": [2, 6, 8, 12, 22], "succeed": [2, 12], "fail": [2, 6, 8, 12, 19, 22], "start": [2, 11, 19, 21, 22], "rais": [2, 6, 12, 13, 19, 22], "get_iteration_pipelin": [2, 12, 20], "pipeline_nam": [2, 12], "node_nam": [2, 6, 10, 12], "process_or_id": [2, 12], "iterative_plug": [2, 6, 12, 19, 20], "do_not_export": [2, 6, 12], "make_opt": [2, 6, 12], "descript": [2, 6, 8, 9, 10, 11, 12, 15, 19], "pass": [2, 6, 8, 9, 12, 19, 21, 22], "add_iterative_process": [2, 6, 10, 12, 19, 20], "offici": 2, "now": [2, 8, 11, 12, 22], "simpli": [2, 12, 19, 22], "futur": [2, 6, 15], "import_config": 2, "config_dict": 2, "cont_on_error": 2, "compar": [2, 12], "load": [2, 6, 8, 10, 11, 12, 19, 21], "interrupt": 2, "try": [2, 10, 12, 13, 19, 22], "stop": [2, 6], 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"nipype-factory"]], "capsul.process.runprocess submodule": [[8, "module-capsul.process.runprocess"]], "ProcessParamError": [[8, "processparamerror"]], "set_process_param_from_str()": [[8, "set-process-param-from-str"]], "get_process_with_params()": [[8, "get-process-with-params"]], "run_process_with_distribution()": [[8, "run-process-with-distribution"]], "convert_commandline_parameter()": [[8, "convert-commandline-parameter"]], "main()": [[8, "main"]], "capsul.process.xml submodule": [[8, "module-capsul.process.xml"]], "XMLProcess": [[8, "xmlprocess"]], "string_to_value()": [[8, "string-to-value"]], "trait_from_xml()": [[8, "trait-from-xml"]], "create_xml_process()": [[8, "create-xml-process"]], "Decorator": [[8, "decorator"]], "xml_process()": [[8, "xml-process"]], "capsul.qt_apps module": [[9, "capsul-qt-apps-module"]], "capsul.qt_apps.main_window submodule": [[9, "capsul-qt-apps-main-window-submodule"]], "capsul.qt_apps.pipeline_viewer_app submodule": [[9, "capsul-qt-apps-pipeline-viewer-app-submodule"]], "capsul.qt_apps.utils submodule": [[9, "module-capsul.qt_apps.utils"]], "capsul.qt_apps.utils.application submodule": [[9, "module-capsul.qt_apps.utils.application"]], "Application": [[9, "application"]], "EmittingStream": [[9, "emittingstream"]], "capsul.qt_apps.utils.fill_treectrl submodule": [[9, "module-capsul.qt_apps.utils.fill_treectrl"]], "fill_treectrl()": [[9, "fill-treectrl"]], "add_tree_nodes()": [[9, "add-tree-nodes"]], "search_in_menu()": [[9, "search-in-menu"]], "capsul.qt_apps.utils.find_pipelines submodule": [[9, "module-capsul.qt_apps.utils.find_pipelines"]], "find_pipelines_from_description()": [[9, "find-pipelines-from-description"]], "find_pipeline_and_process()": [[9, "find-pipeline-and-process"]], "lists2dict()": [[9, "lists2dict"]], "capsul.qt_apps.utils.window submodule": [[9, "module-capsul.qt_apps.utils.window"]], "MyQUiLoader": [[9, "myquiloader"]], "capsul.qt_gui module": [[10, "capsul-qt-gui-module"]], "capsul.qt_gui.board_widget submodule": [[10, "module-capsul.qt_gui.board_widget"]], "BoardWidget": [[10, "boardwidget"]], "capsul.qt_gui.widgets.activation_inspector submodule": [[10, "module-capsul.qt_gui.widgets.activation_inspector"]], "ActivationInspectorApp": [[10, "activationinspectorapp"]], "ActivationInspector": [[10, "activationinspector"]], "capsul.qt_gui.widgets.attributed_process_widget submodule": [[10, "module-capsul.qt_gui.widgets.attributed_process_widget"]], "AttributedProcessWidget": [[10, "attributedprocesswidget"]], "capsul.qt_gui.widgets.links_debugger submodule": [[10, "module-capsul.qt_gui.widgets.links_debugger"]], "CapsulLinkDebuggerView": [[10, "capsullinkdebuggerview"]], "capsul.qt_gui.widgets.pipeline_developer_view submodule": [[10, "module-capsul.qt_gui.widgets.pipeline_developer_view"]], "ColorType": [[10, "colortype"]], "EmbeddedSubPipelineItem": [[10, "embeddedsubpipelineitem"]], "boxItem": [[10, "boxitem"]], "NodeGWidget": [[10, "nodegwidget"]], "HandleItem": [[10, "handleitem"]], "Link": [[10, "link"]], "PipelineScene": [[10, "pipelinescene"]], "PipelineDeveloperView": [[10, "pipelinedeveloperview"]], "capsul.qt_gui.widgets.pipeline_file_warning_widget submodule": [[10, "module-capsul.qt_gui.widgets.pipeline_file_warning_widget"]], "PipelineFileWarningWidget": [[10, "pipelinefilewarningwidget"]], "capsul.qt_gui.widgets.pipeline_user_view submodule": [[10, "module-capsul.qt_gui.widgets.pipeline_user_view"]], "PipelineUserView": [[10, "pipelineuserview"]], "capsul.qt_gui.widgets.viewer_widget submodule": [[10, "module-capsul.qt_gui.widgets.viewer_widget"]], "ViewerWidget": [[10, "viewerwidget"]], "capsul.sphinxext module": [[11, "capsul-sphinxext-module"]], "Commands": [[11, "commands"]], "capsul.study_config module": [[12, "capsul-study-config-module"]], "capsul.study_config.config_utils submodule": [[12, "module-capsul.study_config.config_utils"]], "environment()": [[12, "environment"]], "capsul.study_config.memory 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"StudyConfigModule": [[12, "studyconfigmodule"]], "default_study_config()": [[12, "default-study-config"]], "capsul.study_config.config_modules submodule": [[12, "capsul-study-config-config-modules-submodule"]], "capsul.study_config.config_modules.attributes_config submodule": [[12, "capsul-study-config-config-modules-attributes-config-submodule"]], "AttributesConfig": [[12, "attributesconfig"]], "capsul.study_config.config_modules.brainvisa_config submodule": [[12, "module-capsul.study_config.config_modules.brainvisa_config"]], "BrainVISAConfig": [[12, "brainvisaconfig"]], "capsul.study_config.config_modules.fom_config submodule": [[12, "module-capsul.study_config.config_modules.fom_config"]], "capsul.study_config.config_modules.freesurfer_config submodule": [[12, "module-capsul.study_config.config_modules.freesurfer_config"]], "FreeSurferConfig": [[12, "freesurferconfig"]], "capsul.study_config.config_modules.fsl_config submodule": [[12, "module-capsul.study_config.config_modules.fsl_config"]], "FSLConfig": [[12, "fslconfig"]], "capsul.study_config.config_modules.matlab_config submodule": [[12, "module-capsul.study_config.config_modules.matlab_config"]], "MatlabConfig": [[12, "matlabconfig"]], "capsul.study_config.config_modules.nipype_config submodule": [[12, "module-capsul.study_config.config_modules.nipype_config"]], "NipypeConfig": [[12, "nipypeconfig"]], "capsul.study_config.config_modules.smartcaching_config submodule": [[12, "module-capsul.study_config.config_modules.smartcaching_config"]], "SmartCachingConfig": [[12, "smartcachingconfig"]], "capsul.study_config.config_modules.somaworkflow_config submodule": [[12, "module-capsul.study_config.config_modules.somaworkflow_config"]], "ResourceController": [[12, "resourcecontroller"]], "SomaWorkflowConfig": [[12, "somaworkflowconfig"]], "capsul.study_config.config_modules.spm_config submodule": [[12, "module-capsul.study_config.config_modules.spm_config"]], "SPMConfig": [[12, "spmconfig"]], "capsul.subprocess module": [[13, "capsul-subprocess-module"]], "capsul.subprocess.fsl submodule": [[13, "module-capsul.subprocess.fsl"]], "Popen": [[13, "popen"], [13, "id2"]], "fsl_command_with_environment()": [[13, "fsl-command-with-environment"]], "check_fsl_configuration()": [[13, "check-fsl-configuration"]], "check_configuration_values()": [[13, "check-configuration-values"], [13, "id4"]], "auto_configuration()": [[13, "auto-configuration"], [13, "id5"]], "call()": [[13, "call"], [13, "id6"]], "check_call()": [[13, "check-call"], [13, "id7"]], "check_output()": [[13, "check-output"], [13, "id8"]], "capsul.subprocess.spm submodule": [[13, "module-capsul.subprocess.spm"]], "find_spm()": [[13, "find-spm"]], "check_spm_configuration()": [[13, "check-spm-configuration"]], "spm_command()": [[13, "spm-command"]], "capsul.utils module": [[14, "capsul-utils-module"]], "find_processes()": [[14, "find-processes"]], "get_tool_version()": [[14, 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exportations": [[19, "Links-and-exportations"]], "Switches": [[19, "Switches"]], "Using the Python API": [[19, "Using-the-Python-API"]], "Iteration over a process or pipeline": [[19, "Iteration-over-a-process-or-pipeline"]], "FOM definition": [[19, "FOM-definition"]], "Now Cleanup the files we have created\u2026": [[19, "Now-Cleanup-the-files-we-have-created..."]], "Parameters completion": [[20, "parameters-completion"]], "Completion model": [[20, "completion-model"]], "Using completion": [[20, "using-completion"]], "Graphical interface": [[20, "graphical-interface"]], "Defining a custom completion system": [[20, "defining-a-custom-completion-system"]], "Path building from attributes": [[20, "path-building-from-attributes"]], "Declaring attributes sets": [[20, "declaring-attributes-sets"]], "Declaring process and parameters attributes": [[20, "declaring-process-and-parameters-attributes"]], "Putting things together": [[20, "putting-things-together"]], "File Organization Model (FOM)": [[20, "file-organization-model-fom"]], "Using FOMs": [[20, "using-foms"]], "Defining FOMs": [[20, "defining-foms"]], "Iterating processing over multiple data": [[20, "iterating-processing-over-multiple-data"]], "User Guide": [[21, "user-guide"]], "Tutorial": [[21, "tutorial"]], "Running Capsul": [[21, "running-capsul"]], "Running as commandline": [[21, "running-as-commandline"]], "XML Specifications": [[21, "xml-specifications"]], "Documenting CAPSUL processes and pipelines with Sphinx": [[21, "documenting-capsul-processes-and-pipelines-with-sphinx"]], "Advanced usage": [[21, "advanced-usage"]], "XML 2.0 specification": [[22, "xml-2-0-specification"]], "Table of content": [[22, "table-of-content"]], "Processes": [[22, "processes"]], "Parameter types": [[22, "parameter-types"]], "Process roles": [[22, "process-roles"]], "Association between a Python function and an XML string": [[22, "association-between-a-python-function-and-an-xml-string"]], "Processes examples": [[22, 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"fsl_check_call() (in module capsul.in_context.fsl)": [[3, "capsul.in_context.fsl.fsl_check_call"]], "fsl_check_output() (in module capsul.in_context.fsl)": [[3, "capsul.in_context.fsl.fsl_check_output"]], "fsl_command_with_environment() (in module capsul.in_context.fsl)": [[3, "capsul.in_context.fsl.fsl_command_with_environment"]], "fsl_env() (in module capsul.in_context.fsl)": [[3, "capsul.in_context.fsl.fsl_env"]], "spm_call() (in module capsul.in_context.spm)": [[3, "capsul.in_context.spm.spm_call"]], "spm_check_call() (in module capsul.in_context.spm)": [[3, "capsul.in_context.spm.spm_check_call"]], "spm_check_output() (in module capsul.in_context.spm)": [[3, "capsul.in_context.spm.spm_check_output"]], "capsul.info": [[5, "module-capsul.info"]], "constructedpipeline (class in capsul.pipeline.pipeline_construction)": [[6, "capsul.pipeline.pipeline_construction.ConstructedPipeline"]], "crossvalidationfoldnode (class in capsul.pipeline.custom_nodes.cv_node)": [[6, 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"capsul.study_config.memory.file_fingerprint"]], "generate_logging (capsul.study_config.study_config.studyconfig attribute)": [[12, "capsul.study_config.study_config.StudyConfig.generate_logging"]], "get_configuration_dict() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.get_configuration_dict"]], "get_iteration_pipeline() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.get_iteration_pipeline"]], "get_node_class() (in module capsul.study_config.process_instance)": [[12, "capsul.study_config.process_instance.get_node_class"]], "get_node_instance() (in module capsul.study_config.process_instance)": [[12, "capsul.study_config.process_instance.get_node_instance"]], "get_process_instance() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.get_process_instance"]], "get_process_instance() (in module capsul.study_config.process_instance)": [[12, "capsul.study_config.process_instance.get_process_instance"]], "get_process_signature() (in module capsul.study_config.memory)": [[12, "capsul.study_config.memory.get_process_signature"]], "get_resource_id() (capsul.study_config.config_modules.somaworkflow_config.somaworkflowconfig method)": [[12, "capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.get_resource_id"], [12, "id25"]], "get_trait() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.get_trait"], [12, "id7"]], "get_trait_value() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.get_trait_value"], [12, "id8"]], "get_workflow_controller() (capsul.study_config.config_modules.somaworkflow_config.somaworkflowconfig method)": [[12, "capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.get_workflow_controller"], [12, "id26"]], "has_attribute() (in module capsul.study_config.memory)": [[12, "capsul.study_config.memory.has_attribute"]], "initialize_callbacks() (capsul.study_config.config_modules.attributes_config.attributesconfig method)": [[12, "capsul.study_config.config_modules.attributes_config.AttributesConfig.initialize_callbacks"]], "initialize_callbacks() (capsul.study_config.config_modules.brainvisa_config.brainvisaconfig method)": [[12, "capsul.study_config.config_modules.brainvisa_config.BrainVISAConfig.initialize_callbacks"]], "initialize_callbacks() (capsul.study_config.config_modules.fom_config.fomconfig method)": [[12, "capsul.study_config.config_modules.fom_config.FomConfig.initialize_callbacks"]], "initialize_callbacks() (capsul.study_config.config_modules.freesurfer_config.freesurferconfig method)": [[12, "capsul.study_config.config_modules.freesurfer_config.FreeSurferConfig.initialize_callbacks"]], "initialize_callbacks() (capsul.study_config.config_modules.fsl_config.fslconfig method)": [[12, "capsul.study_config.config_modules.fsl_config.FSLConfig.initialize_callbacks"]], "initialize_callbacks() (capsul.study_config.config_modules.matlab_config.matlabconfig method)": [[12, "capsul.study_config.config_modules.matlab_config.MatlabConfig.initialize_callbacks"]], "initialize_callbacks() (capsul.study_config.config_modules.nipype_config.nipypeconfig method)": [[12, "capsul.study_config.config_modules.nipype_config.NipypeConfig.initialize_callbacks"]], "initialize_callbacks() (capsul.study_config.config_modules.somaworkflow_config.somaworkflowconfig method)": [[12, "capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.initialize_callbacks"]], "initialize_callbacks() (capsul.study_config.config_modules.spm_config.spmconfig method)": [[12, "capsul.study_config.config_modules.spm_config.SPMConfig.initialize_callbacks"]], "initialize_callbacks() (capsul.study_config.study_config.studyconfigmodule method)": [[12, "capsul.study_config.study_config.StudyConfigModule.initialize_callbacks"]], "initialize_module() (capsul.study_config.config_modules.attributes_config.attributesconfig method)": [[12, "capsul.study_config.config_modules.attributes_config.AttributesConfig.initialize_module"]], "initialize_module() (capsul.study_config.config_modules.brainvisa_config.brainvisaconfig method)": [[12, "capsul.study_config.config_modules.brainvisa_config.BrainVISAConfig.initialize_module"]], "initialize_module() (capsul.study_config.config_modules.fom_config.fomconfig method)": [[12, "capsul.study_config.config_modules.fom_config.FomConfig.initialize_module"]], "initialize_module() (capsul.study_config.config_modules.freesurfer_config.freesurferconfig method)": [[12, "capsul.study_config.config_modules.freesurfer_config.FreeSurferConfig.initialize_module"]], "initialize_module() (capsul.study_config.config_modules.fsl_config.fslconfig method)": [[12, "capsul.study_config.config_modules.fsl_config.FSLConfig.initialize_module"]], "initialize_module() (capsul.study_config.config_modules.matlab_config.matlabconfig method)": [[12, "capsul.study_config.config_modules.matlab_config.MatlabConfig.initialize_module"]], "initialize_module() (capsul.study_config.config_modules.nipype_config.nipypeconfig method)": [[12, "capsul.study_config.config_modules.nipype_config.NipypeConfig.initialize_module"]], "initialize_module() (capsul.study_config.config_modules.spm_config.spmconfig method)": [[12, "capsul.study_config.config_modules.spm_config.SPMConfig.initialize_module"]], "initialize_module() (capsul.study_config.study_config.studyconfigmodule method)": [[12, "capsul.study_config.study_config.StudyConfigModule.initialize_module"]], "initialize_modules() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.initialize_modules"]], "input_directory (capsul.study_config.study_config.studyconfig attribute)": [[12, "capsul.study_config.study_config.StudyConfig.input_directory"]], "is_pipeline_node() (in module capsul.study_config.process_instance)": [[12, "capsul.study_config.process_instance.is_pipeline_node"]], "is_process() (in module capsul.study_config.process_instance)": [[12, "capsul.study_config.process_instance.is_process"]], "load_module() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.load_module"]], "name (capsul.study_config.study_config.studyconfigmodule property)": [[12, "capsul.study_config.study_config.StudyConfigModule.name"]], "output_directory (capsul.study_config.study_config.studyconfig attribute)": [[12, "capsul.study_config.study_config.StudyConfig.output_directory"]], "path_translations (capsul.study_config.config_modules.somaworkflow_config.resourcecontroller attribute)": [[12, "capsul.study_config.config_modules.somaworkflow_config.ResourceController.path_translations"]], "process_output_directory (capsul.study_config.study_config.studyconfig attribute)": [[12, "capsul.study_config.study_config.StudyConfig.process_output_directory"]], "queue (capsul.study_config.config_modules.somaworkflow_config.resourcecontroller attribute)": [[12, "capsul.study_config.config_modules.somaworkflow_config.ResourceController.queue"]], "read_configuration() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.read_configuration"]], "reset_process_counter() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.reset_process_counter"], [12, "id9"]], "run() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.run"], [12, "id10"]], "run_process() (in module capsul.study_config.run)": [[12, "capsul.study_config.run.run_process"]], "save_configuration() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.save_configuration"]], "set_computing_resource_password() (capsul.study_config.config_modules.somaworkflow_config.somaworkflowconfig method)": [[12, "capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.set_computing_resource_password"], [12, "id27"]], "set_study_configuration() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.set_study_configuration"], [12, "id11"]], "set_trait_value() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.set_trait_value"], [12, "id12"]], "somaworkflow_computing_resource (capsul.study_config.config_modules.somaworkflow_config.somaworkflowconfig attribute)": [[12, "capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.somaworkflow_computing_resource"]], "somaworkflow_computing_resources_config (capsul.study_config.config_modules.somaworkflow_config.somaworkflowconfig attribute)": [[12, "capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.somaworkflow_computing_resources_config"]], "somaworkflow_config_file (capsul.study_config.config_modules.somaworkflow_config.somaworkflowconfig attribute)": [[12, "capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.somaworkflow_config_file"]], "somaworkflow_keep_failed_workflows (capsul.study_config.config_modules.somaworkflow_config.somaworkflowconfig attribute)": [[12, "capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.somaworkflow_keep_failed_workflows"]], "somaworkflow_keep_succeeded_workflows (capsul.study_config.config_modules.somaworkflow_config.somaworkflowconfig attribute)": [[12, "capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.somaworkflow_keep_succeeded_workflows"]], "transfer_paths (capsul.study_config.config_modules.somaworkflow_config.resourcecontroller attribute)": [[12, "capsul.study_config.config_modules.somaworkflow_config.ResourceController.transfer_paths"]], "tuple_json_encoder() (in module capsul.study_config.memory)": [[12, "capsul.study_config.memory.tuple_json_encoder"]], "update_study_configuration() (capsul.study_config.study_config.studyconfig method)": [[12, "capsul.study_config.study_config.StudyConfig.update_study_configuration"], [12, "id13"]], "use_soma_workflow (capsul.study_config.config_modules.somaworkflow_config.somaworkflowconfig attribute)": [[12, "capsul.study_config.config_modules.somaworkflow_config.SomaWorkflowConfig.use_soma_workflow"]], "popen (class in capsul.subprocess.fsl)": [[13, "capsul.subprocess.fsl.Popen"]], "popen (class in capsul.subprocess.spm)": [[13, "capsul.subprocess.spm.Popen"]], "auto_configuration() (in module capsul.subprocess.fsl)": [[13, "capsul.subprocess.fsl.auto_configuration"]], "auto_configuration() (in module capsul.subprocess.spm)": [[13, "capsul.subprocess.spm.auto_configuration"]], "call() (in module capsul.subprocess.fsl)": [[13, "capsul.subprocess.fsl.call"]], "call() (in module capsul.subprocess.spm)": [[13, "capsul.subprocess.spm.call"]], "capsul.subprocess": [[13, "module-capsul.subprocess"]], "capsul.subprocess.fsl": [[13, "module-capsul.subprocess.fsl"]], "capsul.subprocess.spm": [[13, "module-capsul.subprocess.spm"]], "check_call() (in module capsul.subprocess.fsl)": [[13, "capsul.subprocess.fsl.check_call"]], "check_call() (in module capsul.subprocess.spm)": [[13, "capsul.subprocess.spm.check_call"]], "check_configuration_values() (in module capsul.subprocess.fsl)": [[13, "capsul.subprocess.fsl.check_configuration_values"]], "check_configuration_values() (in module capsul.subprocess.spm)": [[13, "capsul.subprocess.spm.check_configuration_values"]], "check_fsl_configuration() (in module capsul.subprocess.fsl)": [[13, "capsul.subprocess.fsl.check_fsl_configuration"]], "check_output() (in module capsul.subprocess.fsl)": [[13, "capsul.subprocess.fsl.check_output"]], "check_output() (in module capsul.subprocess.spm)": [[13, "capsul.subprocess.spm.check_output"]], "check_spm_configuration() (in module capsul.subprocess.spm)": [[13, "capsul.subprocess.spm.check_spm_configuration"]], "find_spm() (in module capsul.subprocess.spm)": [[13, "capsul.subprocess.spm.find_spm"]], "fsl_command_with_environment() (in module capsul.subprocess.fsl)": [[13, "capsul.subprocess.fsl.fsl_command_with_environment"]], "capsul.utils": [[14, "module-capsul.utils"]], "capsul.utils.finder": [[14, "module-capsul.utils.finder"]], "capsul.utils.version_utils": [[14, "module-capsul.utils.version_utils"]], "find_processes() (in module capsul.utils.finder)": [[14, "capsul.utils.finder.find_processes"]], "get_nipype_interfaces_versions() (in module capsul.utils.version_utils)": [[14, "capsul.utils.version_utils.get_nipype_interfaces_versions"]], "get_tool_version() (in module capsul.utils.version_utils)": [[14, "capsul.utils.version_utils.get_tool_version"]]}})
    \ No newline at end of file
    diff --git a/tutorial/capsul_tutorial.html b/tutorial/capsul_tutorial.html
    index 93c41535..65b545fb 100644
    --- a/tutorial/capsul_tutorial.html
    +++ b/tutorial/capsul_tutorial.html
    @@ -1144,7 +1144,7 @@ 

    StudyConfig

    somaworkflow_config_file : <undefined> somaworkflow_keep_failed_workflows : True somaworkflow_keep_succeeded_workflows : False -somaworkflow_computing_resources_config : <soma.controller.controller.OpenKeyController object at 0x7fe5308b5720> +somaworkflow_computing_resources_config : <soma.controller.controller.OpenKeyController object at 0x7f79640988b0> spm_directory : <undefined> spm_standalone : <undefined> spm_version : <undefined> @@ -1303,8 +1303,8 @@

    Distributed execution using Soma-Workflow

    -jobs: [<soma_workflow.client_types.Job object at 0x7fe530b9ed00>, <soma_workflow.client_types.Job object at 0x7fe530b9ed90>]
    -dependencies: {(<soma_workflow.client_types.Job object at 0x7fe530b9ed90>, <soma_workflow.client_types.Job object at 0x7fe530b9ed00>)}
    +jobs: [<soma_workflow.client_types.Job object at 0x7f7950c4e2b0>, <soma_workflow.client_types.Job object at 0x7f7950c4e370>]
    +dependencies: {(<soma_workflow.client_types.Job object at 0x7f7950c4e370>, <soma_workflow.client_types.Job object at 0x7f7950c4e2b0>)}
     

    The workwlow can be saved and reloaded in soma_workflow_gui, or used in a soma-workflow controller:

    diff --git a/tutorial/capsul_tutorial.ipynb b/tutorial/capsul_tutorial.ipynb index bae5a414..231a3482 100644 --- a/tutorial/capsul_tutorial.ipynb +++ b/tutorial/capsul_tutorial.ipynb @@ -53,10 +53,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.396802Z", - "iopub.status.busy": "2024-04-02T08:26:28.396603Z", - "iopub.status.idle": "2024-04-02T08:26:28.404629Z", - "shell.execute_reply": "2024-04-02T08:26:28.403995Z" + "iopub.execute_input": "2024-04-11T14:17:33.931959Z", + "iopub.status.busy": "2024-04-11T14:17:33.931752Z", + "iopub.status.idle": "2024-04-11T14:17:33.939817Z", + "shell.execute_reply": "2024-04-11T14:17:33.939204Z" } }, "outputs": [], @@ -82,10 +82,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.407244Z", - "iopub.status.busy": "2024-04-02T08:26:28.406738Z", - "iopub.status.idle": "2024-04-02T08:26:28.411015Z", - "shell.execute_reply": "2024-04-02T08:26:28.410367Z" + "iopub.execute_input": "2024-04-11T14:17:33.942200Z", + "iopub.status.busy": "2024-04-11T14:17:33.942003Z", + "iopub.status.idle": "2024-04-11T14:17:33.946227Z", + "shell.execute_reply": "2024-04-11T14:17:33.945620Z" } }, "outputs": [ @@ -124,10 +124,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.448896Z", - "iopub.status.busy": "2024-04-02T08:26:28.448458Z", - "iopub.status.idle": "2024-04-02T08:26:28.693232Z", - "shell.execute_reply": "2024-04-02T08:26:28.692623Z" + "iopub.execute_input": "2024-04-11T14:17:33.983489Z", + "iopub.status.busy": "2024-04-11T14:17:33.982861Z", + "iopub.status.idle": "2024-04-11T14:17:34.227309Z", + "shell.execute_reply": "2024-04-11T14:17:34.226706Z" } }, "outputs": [ @@ -185,10 +185,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.695913Z", - "iopub.status.busy": "2024-04-02T08:26:28.695466Z", - "iopub.status.idle": "2024-04-02T08:26:28.699944Z", - "shell.execute_reply": "2024-04-02T08:26:28.699403Z" + "iopub.execute_input": "2024-04-11T14:17:34.229865Z", + "iopub.status.busy": "2024-04-11T14:17:34.229616Z", + "iopub.status.idle": "2024-04-11T14:17:34.233808Z", + "shell.execute_reply": "2024-04-11T14:17:34.233315Z" } }, "outputs": [], @@ -226,10 +226,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.702496Z", - "iopub.status.busy": "2024-04-02T08:26:28.702124Z", - "iopub.status.idle": "2024-04-02T08:26:28.705617Z", - "shell.execute_reply": "2024-04-02T08:26:28.705036Z" + "iopub.execute_input": "2024-04-11T14:17:34.236342Z", + "iopub.status.busy": "2024-04-11T14:17:34.235965Z", + "iopub.status.idle": "2024-04-11T14:17:34.239382Z", + "shell.execute_reply": "2024-04-11T14:17:34.238740Z" } }, "outputs": [], @@ -268,10 +268,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.708046Z", - "iopub.status.busy": "2024-04-02T08:26:28.707671Z", - "iopub.status.idle": "2024-04-02T08:26:28.711289Z", - "shell.execute_reply": "2024-04-02T08:26:28.710606Z" + "iopub.execute_input": "2024-04-11T14:17:34.241930Z", + "iopub.status.busy": "2024-04-11T14:17:34.241513Z", + "iopub.status.idle": "2024-04-11T14:17:34.245014Z", + "shell.execute_reply": "2024-04-11T14:17:34.244451Z" } }, "outputs": [], @@ -299,10 +299,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.713592Z", - "iopub.status.busy": "2024-04-02T08:26:28.713396Z", - "iopub.status.idle": "2024-04-02T08:26:28.717911Z", - "shell.execute_reply": "2024-04-02T08:26:28.717297Z" + "iopub.execute_input": "2024-04-11T14:17:34.247539Z", + "iopub.status.busy": "2024-04-11T14:17:34.247165Z", + "iopub.status.idle": "2024-04-11T14:17:34.251724Z", + "shell.execute_reply": "2024-04-11T14:17:34.251065Z" } }, "outputs": [ @@ -340,10 +340,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.720214Z", - "iopub.status.busy": "2024-04-02T08:26:28.720021Z", - "iopub.status.idle": "2024-04-02T08:26:28.724434Z", - "shell.execute_reply": "2024-04-02T08:26:28.723892Z" + "iopub.execute_input": "2024-04-11T14:17:34.254196Z", + "iopub.status.busy": "2024-04-11T14:17:34.253815Z", + "iopub.status.idle": "2024-04-11T14:17:34.258279Z", + "shell.execute_reply": "2024-04-11T14:17:34.257743Z" } }, "outputs": [], @@ -386,10 +386,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.726695Z", - "iopub.status.busy": "2024-04-02T08:26:28.726476Z", - "iopub.status.idle": "2024-04-02T08:26:28.733372Z", - "shell.execute_reply": "2024-04-02T08:26:28.732753Z" + "iopub.execute_input": "2024-04-11T14:17:34.260588Z", + "iopub.status.busy": "2024-04-11T14:17:34.260386Z", + "iopub.status.idle": "2024-04-11T14:17:34.267352Z", + "shell.execute_reply": "2024-04-11T14:17:34.266773Z" } }, "outputs": [], @@ -425,10 +425,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.735801Z", - "iopub.status.busy": "2024-04-02T08:26:28.735446Z", - "iopub.status.idle": "2024-04-02T08:26:28.739821Z", - "shell.execute_reply": "2024-04-02T08:26:28.739183Z" + "iopub.execute_input": "2024-04-11T14:17:34.269623Z", + "iopub.status.busy": "2024-04-11T14:17:34.269423Z", + "iopub.status.idle": "2024-04-11T14:17:34.273807Z", + "shell.execute_reply": "2024-04-11T14:17:34.273266Z" } }, "outputs": [], @@ -478,10 +478,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.742255Z", - "iopub.status.busy": "2024-04-02T08:26:28.741875Z", - "iopub.status.idle": "2024-04-02T08:26:28.745562Z", - "shell.execute_reply": "2024-04-02T08:26:28.745026Z" + "iopub.execute_input": "2024-04-11T14:17:34.276289Z", + "iopub.status.busy": "2024-04-11T14:17:34.275932Z", + "iopub.status.idle": "2024-04-11T14:17:34.279581Z", + "shell.execute_reply": "2024-04-11T14:17:34.279050Z" } }, "outputs": [], @@ -517,10 +517,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.747939Z", - "iopub.status.busy": "2024-04-02T08:26:28.747738Z", - "iopub.status.idle": "2024-04-02T08:26:28.751371Z", - "shell.execute_reply": "2024-04-02T08:26:28.750794Z" + "iopub.execute_input": "2024-04-11T14:17:34.281803Z", + "iopub.status.busy": "2024-04-11T14:17:34.281606Z", + "iopub.status.idle": "2024-04-11T14:17:34.285315Z", + "shell.execute_reply": "2024-04-11T14:17:34.284780Z" } }, "outputs": [], @@ -545,10 +545,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.753715Z", - "iopub.status.busy": "2024-04-02T08:26:28.753357Z", - "iopub.status.idle": "2024-04-02T08:26:28.759277Z", - "shell.execute_reply": "2024-04-02T08:26:28.758714Z" + "iopub.execute_input": "2024-04-11T14:17:34.287542Z", + "iopub.status.busy": "2024-04-11T14:17:34.287344Z", + "iopub.status.idle": "2024-04-11T14:17:34.293193Z", + "shell.execute_reply": "2024-04-11T14:17:34.292561Z" } }, "outputs": [], @@ -579,10 +579,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.761674Z", - "iopub.status.busy": "2024-04-02T08:26:28.761300Z", - "iopub.status.idle": "2024-04-02T08:26:28.773651Z", - "shell.execute_reply": "2024-04-02T08:26:28.772999Z" + "iopub.execute_input": "2024-04-11T14:17:34.295690Z", + "iopub.status.busy": "2024-04-11T14:17:34.295383Z", + "iopub.status.idle": "2024-04-11T14:17:34.308718Z", + "shell.execute_reply": "2024-04-11T14:17:34.307990Z" } }, "outputs": [ @@ -621,10 +621,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.776386Z", - "iopub.status.busy": "2024-04-02T08:26:28.775980Z", - "iopub.status.idle": "2024-04-02T08:26:28.781098Z", - "shell.execute_reply": "2024-04-02T08:26:28.780585Z" + "iopub.execute_input": "2024-04-11T14:17:34.311531Z", + "iopub.status.busy": "2024-04-11T14:17:34.311310Z", + "iopub.status.idle": "2024-04-11T14:17:34.316731Z", + "shell.execute_reply": "2024-04-11T14:17:34.316121Z" }, "scrolled": false }, @@ -693,10 +693,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.783441Z", - "iopub.status.busy": "2024-04-02T08:26:28.783075Z", - "iopub.status.idle": "2024-04-02T08:26:28.805713Z", - "shell.execute_reply": "2024-04-02T08:26:28.805150Z" + "iopub.execute_input": "2024-04-11T14:17:34.319210Z", + "iopub.status.busy": "2024-04-11T14:17:34.318857Z", + "iopub.status.idle": "2024-04-11T14:17:34.342203Z", + "shell.execute_reply": "2024-04-11T14:17:34.341678Z" } }, "outputs": [ @@ -766,10 +766,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.808340Z", - "iopub.status.busy": "2024-04-02T08:26:28.807961Z", - "iopub.status.idle": "2024-04-02T08:26:28.811799Z", - "shell.execute_reply": "2024-04-02T08:26:28.811205Z" + "iopub.execute_input": "2024-04-11T14:17:34.344616Z", + "iopub.status.busy": "2024-04-11T14:17:34.344413Z", + "iopub.status.idle": "2024-04-11T14:17:34.348317Z", + "shell.execute_reply": "2024-04-11T14:17:34.347805Z" } }, "outputs": [], @@ -813,10 +813,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.814197Z", - "iopub.status.busy": "2024-04-02T08:26:28.813830Z", - "iopub.status.idle": "2024-04-02T08:26:28.817637Z", - "shell.execute_reply": "2024-04-02T08:26:28.817077Z" + "iopub.execute_input": "2024-04-11T14:17:34.350644Z", + "iopub.status.busy": "2024-04-11T14:17:34.350448Z", + "iopub.status.idle": "2024-04-11T14:17:34.354298Z", + "shell.execute_reply": "2024-04-11T14:17:34.353777Z" } }, "outputs": [], @@ -841,10 +841,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.820119Z", - "iopub.status.busy": "2024-04-02T08:26:28.819747Z", - "iopub.status.idle": "2024-04-02T08:26:28.827204Z", - "shell.execute_reply": "2024-04-02T08:26:28.826615Z" + "iopub.execute_input": "2024-04-11T14:17:34.356609Z", + "iopub.status.busy": "2024-04-11T14:17:34.356413Z", + "iopub.status.idle": "2024-04-11T14:17:34.363815Z", + "shell.execute_reply": "2024-04-11T14:17:34.363285Z" } }, "outputs": [], @@ -875,10 +875,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.829645Z", - "iopub.status.busy": "2024-04-02T08:26:28.829262Z", - "iopub.status.idle": "2024-04-02T08:26:28.832729Z", - "shell.execute_reply": "2024-04-02T08:26:28.832143Z" + "iopub.execute_input": "2024-04-11T14:17:34.366223Z", + "iopub.status.busy": "2024-04-11T14:17:34.365844Z", + "iopub.status.idle": "2024-04-11T14:17:34.369418Z", + "shell.execute_reply": "2024-04-11T14:17:34.368886Z" } }, "outputs": [], @@ -899,10 +899,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.835159Z", - "iopub.status.busy": "2024-04-02T08:26:28.834784Z", - "iopub.status.idle": "2024-04-02T08:26:28.846076Z", - "shell.execute_reply": "2024-04-02T08:26:28.845331Z" + "iopub.execute_input": "2024-04-11T14:17:34.371974Z", + "iopub.status.busy": "2024-04-11T14:17:34.371516Z", + "iopub.status.idle": "2024-04-11T14:17:34.382424Z", + "shell.execute_reply": "2024-04-11T14:17:34.381704Z" } }, "outputs": [ @@ -936,10 +936,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.848802Z", - "iopub.status.busy": "2024-04-02T08:26:28.848400Z", - "iopub.status.idle": "2024-04-02T08:26:28.852991Z", - "shell.execute_reply": "2024-04-02T08:26:28.852431Z" + "iopub.execute_input": "2024-04-11T14:17:34.385269Z", + "iopub.status.busy": "2024-04-11T14:17:34.384892Z", + "iopub.status.idle": "2024-04-11T14:17:34.389394Z", + "shell.execute_reply": "2024-04-11T14:17:34.388775Z" } }, "outputs": [ @@ -1083,10 +1083,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.855462Z", - "iopub.status.busy": "2024-04-02T08:26:28.855085Z", - "iopub.status.idle": "2024-04-02T08:26:28.886133Z", - "shell.execute_reply": "2024-04-02T08:26:28.885561Z" + "iopub.execute_input": "2024-04-11T14:17:34.391807Z", + "iopub.status.busy": "2024-04-11T14:17:34.391468Z", + "iopub.status.idle": "2024-04-11T14:17:34.422420Z", + "shell.execute_reply": "2024-04-11T14:17:34.421858Z" } }, "outputs": [ @@ -1157,10 +1157,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.888621Z", - "iopub.status.busy": "2024-04-02T08:26:28.888246Z", - "iopub.status.idle": "2024-04-02T08:26:28.892163Z", - "shell.execute_reply": "2024-04-02T08:26:28.891592Z" + "iopub.execute_input": "2024-04-11T14:17:34.425020Z", + "iopub.status.busy": "2024-04-11T14:17:34.424572Z", + "iopub.status.idle": "2024-04-11T14:17:34.428463Z", + "shell.execute_reply": "2024-04-11T14:17:34.427951Z" } }, "outputs": [], @@ -1200,10 +1200,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.894623Z", - "iopub.status.busy": "2024-04-02T08:26:28.894257Z", - "iopub.status.idle": "2024-04-02T08:26:28.898608Z", - "shell.execute_reply": "2024-04-02T08:26:28.898059Z" + "iopub.execute_input": "2024-04-11T14:17:34.430922Z", + "iopub.status.busy": "2024-04-11T14:17:34.430505Z", + "iopub.status.idle": "2024-04-11T14:17:34.434951Z", + "shell.execute_reply": "2024-04-11T14:17:34.434334Z" } }, "outputs": [], @@ -1240,10 +1240,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.901073Z", - "iopub.status.busy": "2024-04-02T08:26:28.900645Z", - "iopub.status.idle": "2024-04-02T08:26:28.908241Z", - "shell.execute_reply": "2024-04-02T08:26:28.907636Z" + "iopub.execute_input": "2024-04-11T14:17:34.437130Z", + "iopub.status.busy": "2024-04-11T14:17:34.436933Z", + "iopub.status.idle": "2024-04-11T14:17:34.444412Z", + "shell.execute_reply": "2024-04-11T14:17:34.443783Z" } }, "outputs": [], @@ -1291,10 +1291,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.910936Z", - "iopub.status.busy": "2024-04-02T08:26:28.910531Z", - "iopub.status.idle": "2024-04-02T08:26:28.939362Z", - "shell.execute_reply": "2024-04-02T08:26:28.938655Z" + "iopub.execute_input": "2024-04-11T14:17:34.446926Z", + "iopub.status.busy": "2024-04-11T14:17:34.446707Z", + "iopub.status.idle": "2024-04-11T14:17:34.474828Z", + "shell.execute_reply": "2024-04-11T14:17:34.474197Z" } }, "outputs": [ @@ -1332,10 +1332,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.942011Z", - "iopub.status.busy": "2024-04-02T08:26:28.941671Z", - "iopub.status.idle": "2024-04-02T08:26:28.947705Z", - "shell.execute_reply": "2024-04-02T08:26:28.947126Z" + "iopub.execute_input": "2024-04-11T14:17:34.477389Z", + "iopub.status.busy": "2024-04-11T14:17:34.477018Z", + "iopub.status.idle": "2024-04-11T14:17:34.482881Z", + "shell.execute_reply": "2024-04-11T14:17:34.482244Z" } }, "outputs": [], @@ -1377,10 +1377,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.950131Z", - "iopub.status.busy": "2024-04-02T08:26:28.949672Z", - "iopub.status.idle": "2024-04-02T08:26:28.956326Z", - "shell.execute_reply": "2024-04-02T08:26:28.955699Z" + "iopub.execute_input": "2024-04-11T14:17:34.485465Z", + "iopub.status.busy": "2024-04-11T14:17:34.484950Z", + "iopub.status.idle": "2024-04-11T14:17:34.491691Z", + "shell.execute_reply": "2024-04-11T14:17:34.491014Z" } }, "outputs": [], @@ -1413,10 +1413,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.959001Z", - "iopub.status.busy": "2024-04-02T08:26:28.958499Z", - "iopub.status.idle": "2024-04-02T08:26:28.965209Z", - "shell.execute_reply": "2024-04-02T08:26:28.964688Z" + "iopub.execute_input": "2024-04-11T14:17:34.493981Z", + "iopub.status.busy": "2024-04-11T14:17:34.493785Z", + "iopub.status.idle": "2024-04-11T14:17:34.500159Z", + "shell.execute_reply": "2024-04-11T14:17:34.499614Z" } }, "outputs": [ @@ -1449,10 +1449,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.967376Z", - "iopub.status.busy": "2024-04-02T08:26:28.967180Z", - "iopub.status.idle": "2024-04-02T08:26:28.970424Z", - "shell.execute_reply": "2024-04-02T08:26:28.969800Z" + "iopub.execute_input": "2024-04-11T14:17:34.502313Z", + "iopub.status.busy": "2024-04-11T14:17:34.502113Z", + "iopub.status.idle": "2024-04-11T14:17:34.505369Z", + "shell.execute_reply": "2024-04-11T14:17:34.504807Z" } }, "outputs": [], @@ -1480,10 +1480,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.972758Z", - "iopub.status.busy": "2024-04-02T08:26:28.972421Z", - "iopub.status.idle": "2024-04-02T08:26:28.976359Z", - "shell.execute_reply": "2024-04-02T08:26:28.975732Z" + "iopub.execute_input": "2024-04-11T14:17:34.507652Z", + "iopub.status.busy": "2024-04-11T14:17:34.507454Z", + "iopub.status.idle": "2024-04-11T14:17:34.511433Z", + "shell.execute_reply": "2024-04-11T14:17:34.510863Z" } }, "outputs": [], @@ -1507,10 +1507,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.978659Z", - "iopub.status.busy": "2024-04-02T08:26:28.978303Z", - "iopub.status.idle": "2024-04-02T08:26:28.986053Z", - "shell.execute_reply": "2024-04-02T08:26:28.985409Z" + "iopub.execute_input": "2024-04-11T14:17:34.513579Z", + "iopub.status.busy": "2024-04-11T14:17:34.513385Z", + "iopub.status.idle": "2024-04-11T14:17:34.521236Z", + "shell.execute_reply": "2024-04-11T14:17:34.520701Z" } }, "outputs": [], @@ -1543,10 +1543,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.988534Z", - "iopub.status.busy": "2024-04-02T08:26:28.988186Z", - "iopub.status.idle": "2024-04-02T08:26:28.994586Z", - "shell.execute_reply": "2024-04-02T08:26:28.994079Z" + "iopub.execute_input": "2024-04-11T14:17:34.523437Z", + "iopub.status.busy": "2024-04-11T14:17:34.523244Z", + "iopub.status.idle": "2024-04-11T14:17:34.529124Z", + "shell.execute_reply": "2024-04-11T14:17:34.528581Z" } }, "outputs": [ @@ -1574,10 +1574,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:28.996743Z", - "iopub.status.busy": "2024-04-02T08:26:28.996549Z", - "iopub.status.idle": "2024-04-02T08:26:28.999349Z", - "shell.execute_reply": "2024-04-02T08:26:28.998845Z" + "iopub.execute_input": "2024-04-11T14:17:34.531522Z", + "iopub.status.busy": "2024-04-11T14:17:34.531148Z", + "iopub.status.idle": "2024-04-11T14:17:34.534080Z", + "shell.execute_reply": "2024-04-11T14:17:34.533556Z" } }, "outputs": [], @@ -1594,10 +1594,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.001687Z", - "iopub.status.busy": "2024-04-02T08:26:29.001323Z", - "iopub.status.idle": "2024-04-02T08:26:29.004451Z", - "shell.execute_reply": "2024-04-02T08:26:29.003896Z" + "iopub.execute_input": "2024-04-11T14:17:34.536377Z", + "iopub.status.busy": "2024-04-11T14:17:34.536006Z", + "iopub.status.idle": "2024-04-11T14:17:34.539343Z", + "shell.execute_reply": "2024-04-11T14:17:34.538659Z" } }, "outputs": [], @@ -1613,10 +1613,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.006764Z", - "iopub.status.busy": "2024-04-02T08:26:29.006364Z", - "iopub.status.idle": "2024-04-02T08:26:29.009652Z", - "shell.execute_reply": "2024-04-02T08:26:29.009092Z" + "iopub.execute_input": "2024-04-11T14:17:34.541789Z", + "iopub.status.busy": "2024-04-11T14:17:34.541412Z", + "iopub.status.idle": "2024-04-11T14:17:34.544577Z", + "shell.execute_reply": "2024-04-11T14:17:34.544002Z" } }, "outputs": [], @@ -1647,10 +1647,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.012008Z", - "iopub.status.busy": "2024-04-02T08:26:29.011633Z", - "iopub.status.idle": "2024-04-02T08:26:29.016606Z", - "shell.execute_reply": "2024-04-02T08:26:29.016048Z" + "iopub.execute_input": "2024-04-11T14:17:34.546951Z", + "iopub.status.busy": "2024-04-11T14:17:34.546553Z", + "iopub.status.idle": "2024-04-11T14:17:34.551599Z", + "shell.execute_reply": "2024-04-11T14:17:34.550987Z" } }, "outputs": [ @@ -1676,10 +1676,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.018929Z", - "iopub.status.busy": "2024-04-02T08:26:29.018522Z", - "iopub.status.idle": "2024-04-02T08:26:29.021841Z", - "shell.execute_reply": "2024-04-02T08:26:29.021223Z" + "iopub.execute_input": "2024-04-11T14:17:34.553980Z", + "iopub.status.busy": "2024-04-11T14:17:34.553606Z", + "iopub.status.idle": "2024-04-11T14:17:34.556830Z", + "shell.execute_reply": "2024-04-11T14:17:34.556306Z" } }, "outputs": [], @@ -1732,10 +1732,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.024235Z", - "iopub.status.busy": "2024-04-02T08:26:29.024039Z", - "iopub.status.idle": "2024-04-02T08:26:29.077798Z", - "shell.execute_reply": "2024-04-02T08:26:29.077159Z" + "iopub.execute_input": "2024-04-11T14:17:34.559239Z", + "iopub.status.busy": "2024-04-11T14:17:34.558816Z", + "iopub.status.idle": "2024-04-11T14:17:34.610420Z", + "shell.execute_reply": "2024-04-11T14:17:34.609798Z" } }, "outputs": [ @@ -1767,7 +1767,7 @@ "somaworkflow_config_file : \n", "somaworkflow_keep_failed_workflows : True\n", "somaworkflow_keep_succeeded_workflows : False\n", - "somaworkflow_computing_resources_config : \n", + "somaworkflow_computing_resources_config : \n", "spm_directory : \n", "spm_standalone : \n", "spm_version : \n", @@ -1823,10 +1823,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.080801Z", - "iopub.status.busy": "2024-04-02T08:26:29.080251Z", - "iopub.status.idle": "2024-04-02T08:26:29.103647Z", - "shell.execute_reply": "2024-04-02T08:26:29.102967Z" + "iopub.execute_input": "2024-04-11T14:17:34.613189Z", + "iopub.status.busy": "2024-04-11T14:17:34.612668Z", + "iopub.status.idle": "2024-04-11T14:17:34.634794Z", + "shell.execute_reply": "2024-04-11T14:17:34.634230Z" } }, "outputs": [ @@ -1896,10 +1896,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.106161Z", - "iopub.status.busy": "2024-04-02T08:26:29.105955Z", - "iopub.status.idle": "2024-04-02T08:26:29.118394Z", - "shell.execute_reply": "2024-04-02T08:26:29.117726Z" + "iopub.execute_input": "2024-04-11T14:17:34.637088Z", + "iopub.status.busy": "2024-04-11T14:17:34.636885Z", + "iopub.status.idle": "2024-04-11T14:17:34.649159Z", + "shell.execute_reply": "2024-04-11T14:17:34.648510Z" } }, "outputs": [ @@ -1947,10 +1947,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.121253Z", - "iopub.status.busy": "2024-04-02T08:26:29.120842Z", - "iopub.status.idle": "2024-04-02T08:26:29.127886Z", - "shell.execute_reply": "2024-04-02T08:26:29.127241Z" + "iopub.execute_input": "2024-04-11T14:17:34.651672Z", + "iopub.status.busy": "2024-04-11T14:17:34.651462Z", + "iopub.status.idle": "2024-04-11T14:17:34.658370Z", + "shell.execute_reply": "2024-04-11T14:17:34.657835Z" } }, "outputs": [], @@ -1996,10 +1996,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.130402Z", - "iopub.status.busy": "2024-04-02T08:26:29.129946Z", - "iopub.status.idle": "2024-04-02T08:26:29.145439Z", - "shell.execute_reply": "2024-04-02T08:26:29.144837Z" + "iopub.execute_input": "2024-04-11T14:17:34.660736Z", + "iopub.status.busy": "2024-04-11T14:17:34.660396Z", + "iopub.status.idle": "2024-04-11T14:17:34.675710Z", + "shell.execute_reply": "2024-04-11T14:17:34.675151Z" } }, "outputs": [ @@ -2007,8 +2007,8 @@ "name": "stdout", "output_type": "stream", "text": [ - "jobs: [, ]\n", - "dependencies: {(, )}\n" + "jobs: [, ]\n", + "dependencies: {(, )}\n" ] } ], @@ -2039,10 +2039,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:29.148109Z", - "iopub.status.busy": "2024-04-02T08:26:29.147737Z", - "iopub.status.idle": "2024-04-02T08:26:32.210048Z", - "shell.execute_reply": "2024-04-02T08:26:32.209374Z" + "iopub.execute_input": "2024-04-11T14:17:34.677905Z", + "iopub.status.busy": "2024-04-11T14:17:34.677698Z", + "iopub.status.idle": "2024-04-11T14:17:37.803426Z", + "shell.execute_reply": "2024-04-11T14:17:37.802699Z" } }, "outputs": [ @@ -2110,10 +2110,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:32.212829Z", - "iopub.status.busy": "2024-04-02T08:26:32.212452Z", - "iopub.status.idle": "2024-04-02T08:26:32.215487Z", - "shell.execute_reply": "2024-04-02T08:26:32.214973Z" + "iopub.execute_input": "2024-04-11T14:17:37.805999Z", + "iopub.status.busy": "2024-04-11T14:17:37.805833Z", + "iopub.status.idle": "2024-04-11T14:17:37.809246Z", + "shell.execute_reply": "2024-04-11T14:17:37.808734Z" } }, "outputs": [], @@ -2141,10 +2141,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:32.217724Z", - "iopub.status.busy": "2024-04-02T08:26:32.217413Z", - "iopub.status.idle": "2024-04-02T08:26:35.273919Z", - "shell.execute_reply": "2024-04-02T08:26:35.273277Z" + "iopub.execute_input": "2024-04-11T14:17:37.811432Z", + "iopub.status.busy": "2024-04-11T14:17:37.811285Z", + "iopub.status.idle": "2024-04-11T14:17:40.863575Z", + "shell.execute_reply": "2024-04-11T14:17:40.862775Z" } }, "outputs": [ @@ -2182,10 +2182,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:35.277140Z", - "iopub.status.busy": "2024-04-02T08:26:35.276768Z", - "iopub.status.idle": "2024-04-02T08:26:38.506888Z", - "shell.execute_reply": "2024-04-02T08:26:38.506225Z" + "iopub.execute_input": "2024-04-11T14:17:40.866567Z", + "iopub.status.busy": "2024-04-11T14:17:40.866385Z", + "iopub.status.idle": "2024-04-11T14:17:44.130646Z", + "shell.execute_reply": "2024-04-11T14:17:44.129982Z" } }, "outputs": [ @@ -2249,10 +2249,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.509567Z", - "iopub.status.busy": "2024-04-02T08:26:38.509391Z", - "iopub.status.idle": "2024-04-02T08:26:38.513258Z", - "shell.execute_reply": "2024-04-02T08:26:38.512631Z" + "iopub.execute_input": "2024-04-11T14:17:44.133531Z", + "iopub.status.busy": "2024-04-11T14:17:44.133140Z", + "iopub.status.idle": "2024-04-11T14:17:44.136972Z", + "shell.execute_reply": "2024-04-11T14:17:44.136327Z" } }, "outputs": [ @@ -2288,10 +2288,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.515459Z", - "iopub.status.busy": "2024-04-02T08:26:38.515311Z", - "iopub.status.idle": "2024-04-02T08:26:38.550751Z", - "shell.execute_reply": "2024-04-02T08:26:38.550177Z" + "iopub.execute_input": "2024-04-11T14:17:44.139687Z", + "iopub.status.busy": "2024-04-11T14:17:44.139204Z", + "iopub.status.idle": "2024-04-11T14:17:44.174220Z", + "shell.execute_reply": "2024-04-11T14:17:44.173685Z" } }, "outputs": [], @@ -2336,10 +2336,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.553592Z", - "iopub.status.busy": "2024-04-02T08:26:38.553388Z", - "iopub.status.idle": "2024-04-02T08:26:38.590940Z", - "shell.execute_reply": "2024-04-02T08:26:38.590290Z" + "iopub.execute_input": "2024-04-11T14:17:44.177074Z", + "iopub.status.busy": "2024-04-11T14:17:44.176764Z", + "iopub.status.idle": "2024-04-11T14:17:44.212853Z", + "shell.execute_reply": "2024-04-11T14:17:44.212186Z" } }, "outputs": [ @@ -2422,10 +2422,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.593480Z", - "iopub.status.busy": "2024-04-02T08:26:38.593320Z", - "iopub.status.idle": "2024-04-02T08:26:38.626599Z", - "shell.execute_reply": "2024-04-02T08:26:38.625953Z" + "iopub.execute_input": "2024-04-11T14:17:44.215622Z", + "iopub.status.busy": "2024-04-11T14:17:44.215155Z", + "iopub.status.idle": "2024-04-11T14:17:44.247191Z", + "shell.execute_reply": "2024-04-11T14:17:44.246613Z" } }, "outputs": [ @@ -2473,10 +2473,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.629148Z", - "iopub.status.busy": "2024-04-02T08:26:38.628984Z", - "iopub.status.idle": "2024-04-02T08:26:38.632286Z", - "shell.execute_reply": "2024-04-02T08:26:38.631763Z" + "iopub.execute_input": "2024-04-11T14:17:44.249879Z", + "iopub.status.busy": "2024-04-11T14:17:44.249467Z", + "iopub.status.idle": "2024-04-11T14:17:44.252572Z", + "shell.execute_reply": "2024-04-11T14:17:44.252048Z" } }, "outputs": [], @@ -2506,10 +2506,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.634720Z", - "iopub.status.busy": "2024-04-02T08:26:38.634389Z", - "iopub.status.idle": "2024-04-02T08:26:38.651036Z", - "shell.execute_reply": "2024-04-02T08:26:38.650365Z" + "iopub.execute_input": "2024-04-11T14:17:44.255145Z", + "iopub.status.busy": "2024-04-11T14:17:44.254742Z", + "iopub.status.idle": "2024-04-11T14:17:44.270925Z", + "shell.execute_reply": "2024-04-11T14:17:44.270304Z" } }, "outputs": [], @@ -2584,10 +2584,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.653874Z", - "iopub.status.busy": "2024-04-02T08:26:38.653514Z", - "iopub.status.idle": "2024-04-02T08:26:38.657323Z", - "shell.execute_reply": "2024-04-02T08:26:38.656734Z" + "iopub.execute_input": "2024-04-11T14:17:44.273489Z", + "iopub.status.busy": "2024-04-11T14:17:44.273054Z", + "iopub.status.idle": "2024-04-11T14:17:44.276560Z", + "shell.execute_reply": "2024-04-11T14:17:44.276068Z" } }, "outputs": [], @@ -2622,10 +2622,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.659919Z", - "iopub.status.busy": "2024-04-02T08:26:38.659569Z", - "iopub.status.idle": "2024-04-02T08:26:38.664945Z", - "shell.execute_reply": "2024-04-02T08:26:38.664444Z" + "iopub.execute_input": "2024-04-11T14:17:44.278921Z", + "iopub.status.busy": "2024-04-11T14:17:44.278572Z", + "iopub.status.idle": "2024-04-11T14:17:44.283757Z", + "shell.execute_reply": "2024-04-11T14:17:44.283143Z" } }, "outputs": [ @@ -2703,10 +2703,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.667395Z", - "iopub.status.busy": "2024-04-02T08:26:38.667054Z", - "iopub.status.idle": "2024-04-02T08:26:38.802238Z", - "shell.execute_reply": "2024-04-02T08:26:38.801545Z" + "iopub.execute_input": "2024-04-11T14:17:44.286142Z", + "iopub.status.busy": "2024-04-11T14:17:44.285751Z", + "iopub.status.idle": "2024-04-11T14:17:44.424375Z", + "shell.execute_reply": "2024-04-11T14:17:44.423719Z" } }, "outputs": [ @@ -2797,10 +2797,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.804975Z", - "iopub.status.busy": "2024-04-02T08:26:38.804806Z", - "iopub.status.idle": "2024-04-02T08:26:38.817671Z", - "shell.execute_reply": "2024-04-02T08:26:38.817092Z" + "iopub.execute_input": "2024-04-11T14:17:44.427228Z", + "iopub.status.busy": "2024-04-11T14:17:44.426871Z", + "iopub.status.idle": "2024-04-11T14:17:44.440124Z", + "shell.execute_reply": "2024-04-11T14:17:44.439620Z" } }, "outputs": [ @@ -2845,10 +2845,10 @@ "deletable": true, "editable": true, "execution": { - "iopub.execute_input": "2024-04-02T08:26:38.820390Z", - "iopub.status.busy": "2024-04-02T08:26:38.819974Z", - "iopub.status.idle": "2024-04-02T08:26:38.823303Z", - "shell.execute_reply": "2024-04-02T08:26:38.822802Z" + "iopub.execute_input": "2024-04-11T14:17:44.442570Z", + "iopub.status.busy": "2024-04-11T14:17:44.442243Z", + "iopub.status.idle": "2024-04-11T14:17:44.445577Z", + "shell.execute_reply": "2024-04-11T14:17:44.444915Z" } }, "outputs": [],