diff --git a/stdpopsim/catalog/DroSec/genome_data.py b/stdpopsim/catalog/DroSec/genome_data.py index 0f818b188..8f3d8cf56 100644 --- a/stdpopsim/catalog/DroSec/genome_data.py +++ b/stdpopsim/catalog/DroSec/genome_data.py @@ -1,6 +1,13 @@ -# File autogenerated from Ensembl REST API. Do not edit. +# File created manually from https://www.ncbi.nlm.nih.gov/assembly/GCF_004382195.1 data = { - "assembly_accession": "GCA_000005215.1", - "assembly_name": "dsec_caf1", - "chromosomes": {}, + "assembly_accession": "GCA_004382195.1", + "assembly_name": "ASM438219v1", + "chromosomes": { + "2L": {"length": 24956976, "synonyms": []}, + "2R": {"length": 21536224, "synonyms": []}, + "3L": {"length": 28131630, "synonyms": []}, + "3R": {"length": 30464902, "synonyms": []}, + "X": {"length": 22909512, "synonyms": []}, + "4": {"length": 1277805, "synonyms": []}, + }, } diff --git a/stdpopsim/catalog/HelMel/genome_data.py b/stdpopsim/catalog/HelMel/genome_data.py index 442658d34..4da71fa20 100644 --- a/stdpopsim/catalog/HelMel/genome_data.py +++ b/stdpopsim/catalog/HelMel/genome_data.py @@ -1,6 +1,37 @@ # File autogenerated from Ensembl REST API. Do not edit. +# +# Manually edited. See +# https://github.com/popsim-consortium/stdpopsim/issues/835#issuecomment-815854055 +# +# Data source: +# http://ensembl.lepbase.org/Heliconius_melpomene_melpomene_hmel25/Info/Index +# +# Chromosomes lengths from Davey et al. 2017 +# data = { - "assembly_accession": "GCA_000313835.1", - "assembly_name": "Hmel1", - "chromosomes": {}, + "assembly_accession": None, # No accession number available + "assembly_name": "Hmel2.5", + "chromosomes": { + "1": {"length": 17206585, "synonyms": []}, + "2": {"length": 9045316, "synonyms": []}, + "3": {"length": 10541528, "synonyms": []}, + "4": {"length": 9662098, "synonyms": []}, + "5": {"length": 9908586, "synonyms": []}, + "6": {"length": 14054175, "synonyms": []}, + "7": {"length": 14308859, "synonyms": []}, + "8": {"length": 9320449, "synonyms": []}, + "9": {"length": 8708747, "synonyms": []}, + "10": {"length": 17965481, "synonyms": []}, + "11": {"length": 11759272, "synonyms": []}, + "12": {"length": 16327298, "synonyms": []}, + "13": {"length": 18127314, "synonyms": []}, + "14": {"length": 9174305, "synonyms": []}, + "15": {"length": 10235750, "synonyms": []}, + "16": {"length": 10083215, "synonyms": []}, + "17": {"length": 14773299, "synonyms": []}, + "18": {"length": 16803890, "synonyms": []}, + "19": {"length": 16399344, "synonyms": []}, + "20": {"length": 14871695, "synonyms": []}, + "21": {"length": 13359691, "synonyms": []}, + }, }