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Docker image

This repository contains a docker image for the dsprov project, which contains annotations for semantically matching and copy/pasted text between the discharge summary and electronic health care (EHR) medical notes (note antecedents) that come before.

This container builds on the MedSecId Docker container, so it also includes the mimic and mednlp tools.

Usage

The makefile controls building of the image and its life cycle. To build the image from scratch:

  1. Build or obtain the mimicdb image as explained in the dsprov docs.
  2. Remove any previous Docker image: make dockerrm
  3. Clean any previous derived objects: make cleanall
  4. Build the image: make build
  5. Start the image(s): make up

Obtaining

The Docker image can be installed with:

docker pull plandes/dsprov:latest