From bd9595e850579de2a7ff2deae50621d3fd63617b Mon Sep 17 00:00:00 2001 From: fangpingmu Date: Mon, 11 Nov 2024 09:25:31 -0500 Subject: [PATCH] Update singularity.md --- docs/applications/singularity.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/applications/singularity.md b/docs/applications/singularity.md index edd3686..5a7a841 100644 --- a/docs/applications/singularity.md +++ b/docs/applications/singularity.md @@ -40,9 +40,9 @@ The [BioContainers](https://biocontainers.pro/) project comprises container imag You can download and convert the Docker image to a Singularity image with: ``` module load singularity/3.8.3 -singularity pull --name bowtie2-2.4.5.sif docker://quay.io/biocontainers/bowtie2: 2.4.5--py36hfca12d5\_2 +singularity pull --name bowtie2-2.5.4.sif docker://quay.io/biocontainers/bowtie2:2.5.4--he20e202_2 ``` -This will produce the file ```bowtie2-2.4.5.sif``` in the current working directory. +This will produce the file ```bowtie2-2.5.4.sif``` in the current working directory. Note that singularity pull requires squashfs, and this library is only installed on the login nodes. If you are using "singularity pull" on the computation nodes, you can load the squashfs-tools/4.4 module. ```