diff --git a/DESCRIPTION b/DESCRIPTION index 78172387..292e4a28 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: sdtm.oak Type: Package Title: SDTM Data Transformation Engine -Version: 0.1.0 +Version: 0.1.1 Authors@R: c( person("Rammprasad", "Ganapathy", email = "ganapathy.rammprasad@gene.com", role = c("aut", "cre")), diff --git a/NEWS.md b/NEWS.md index c6e3af6f..84af6db9 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,7 @@ +# sdtm.oak V0.1.1 + +Fixed the bug that was causing test cases to fail. Updated derive_blfl function to account for baseline_timepoints. Typo updates in the documention. + # sdtm.oak V0.1.0 The V0.1.0 release of {sdtm.oak} users can create the majority of the SDTM domains. Domains that are *NOT* in scope for the V0.1.0 release are DM, Trial Design Domains, SV, SE, RELREC, Associated Person domains, and EPOCH Variable across all domains. @@ -20,7 +24,7 @@ The V0.1.0 release of {sdtm.oak} users can create the majority of the SDTM domai - Functions to create conditioned dataframes to support if then else conditions in SDTM mappings - Articles - Algorithms - - Creating an Events SDTM domain + - Creating an interventions SDTM domain - Creating a Findings SDTM domain - Conditioned Data Frames - Converting dates, times or date-times to ISO 8601 diff --git a/README.Rmd b/README.Rmd index 9dd3f931..7d64e08a 100644 --- a/README.Rmd +++ b/README.Rmd @@ -67,7 +67,7 @@ We are planning to develop the below features in the subsequent releases.\ ## References and Documentation * Please go to [Algorithms](https://pharmaverse.github.io/sdtm.oak/articles/algorithms.html) article to learn about Algorithms. -* Please go to [Create Events Domain](https://pharmaverse.github.io/sdtm.oak/articles/events_domain.html) to learn about step by step process to create an Events domain. +* Please go to [Create Interventions Domain](https://pharmaverse.github.io/sdtm.oak/articles/interventions_domain.html) to learn about step by step process to create an Events domain. * Please go to [Create Findings Domain](https://pharmaverse.github.io/sdtm.oak/articles/findings_domain.html) to learn about step by step process to create an Events domain. * Please go to [Path to Automation](https://pharmaverse.github.io/sdtm.oak/articles/study_sdtm_spec.html) to learn about how the foundational release sets up the stage for automation. diff --git a/README.md b/README.md index 58c78c6c..c167940c 100644 --- a/README.md +++ b/README.md @@ -88,7 +88,7 @@ specification. [Algorithms](https://pharmaverse.github.io/sdtm.oak/articles/algorithms.html) article to learn about Algorithms. - Please go to [Create Events - Domain](https://pharmaverse.github.io/sdtm.oak/articles/events_domain.html) + Domain](https://pharmaverse.github.io/sdtm.oak/articles/interventions_domain.html) to learn about step by step process to create an Events domain. - Please go to [Create Findings Domain](https://pharmaverse.github.io/sdtm.oak/articles/findings_domain.html) diff --git a/renv.lock b/renv.lock index 81d0f3ce..cd6da0f0 100644 --- a/renv.lock +++ b/renv.lock @@ -57,7 +57,7 @@ }, "R.oo": { "Package": "R.oo", - "Version": "1.26.0", + "Version": "1.27.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -66,7 +66,7 @@ "methods", "utils" ], - "Hash": "4fed809e53ddb5407b3da3d0f572e591" + "Hash": "6ac79ff194202248cf946fe3a5d6d498" }, "R.utils": { "Package": "R.utils", diff --git a/renv/profiles/4.2/renv.lock b/renv/profiles/4.2/renv.lock index 0c9569a4..210a2de0 100644 --- a/renv/profiles/4.2/renv.lock +++ b/renv/profiles/4.2/renv.lock @@ -57,7 +57,7 @@ }, "R.oo": { "Package": "R.oo", - "Version": "1.26.0", + "Version": "1.27.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -66,7 +66,7 @@ "methods", "utils" ], - "Hash": "4fed809e53ddb5407b3da3d0f572e591" + "Hash": "6ac79ff194202248cf946fe3a5d6d498" }, "R.utils": { "Package": "R.utils", diff --git a/renv/profiles/4.3/renv.lock b/renv/profiles/4.3/renv.lock index 81d0f3ce..cd6da0f0 100644 --- a/renv/profiles/4.3/renv.lock +++ b/renv/profiles/4.3/renv.lock @@ -57,7 +57,7 @@ }, "R.oo": { "Package": "R.oo", - "Version": "1.26.0", + "Version": "1.27.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -66,7 +66,7 @@ "methods", "utils" ], - "Hash": "4fed809e53ddb5407b3da3d0f572e591" + "Hash": "6ac79ff194202248cf946fe3a5d6d498" }, "R.utils": { "Package": "R.utils", diff --git a/vignettes/findings_domain.Rmd b/vignettes/findings_domain.Rmd index d2145a1c..61358eee 100644 --- a/vignettes/findings_domain.Rmd +++ b/vignettes/findings_domain.Rmd @@ -24,7 +24,7 @@ library(dplyr, warn.conflicts = FALSE) This article describes how to create a Findings SDTM domain using the {sdtm.oak} package. Examples are currently presented and tested in the context of the VS domain. -Before reading this article, it is recommended that users review the "Creating an Events Domain" article, which provides a detailed explanation of various concepts in {sdtm.oak}, such as `oak_id_vars`, `condition_add`, etc. It also offers guidance on which mapping algorithms or functions to use for different mappings and provides a more detailed explanation of how these mapping algorithms or functions work. +Before reading this article, it is recommended that users review the "Creating an Interventions Domain" article, which provides a detailed explanation of various concepts in {sdtm.oak}, such as `oak_id_vars`, `condition_add`, etc. It also offers guidance on which mapping algorithms or functions to use for different mappings and provides a more detailed explanation of how these mapping algorithms or functions work. In this article, we will dive directly into programming and provide further explanation only where it is required. diff --git a/vignettes/events_domain.Rmd b/vignettes/interventions_domain.Rmd similarity index 98% rename from vignettes/events_domain.Rmd rename to vignettes/interventions_domain.Rmd index 55520d41..e48f05ae 100644 --- a/vignettes/events_domain.Rmd +++ b/vignettes/interventions_domain.Rmd @@ -1,9 +1,9 @@ --- -title: "Creating an Events SDTM domain" +title: "Creating an Interventions SDTM domain" output: rmarkdown::html_vignette vignette: > - %\VignetteIndexEntry{Creating an Events SDTM domain} + %\VignetteIndexEntry{Creating an Interventions SDTM domain} %\VignetteEncoding{UTF-8} %\VignetteEngine{knitr::rmarkdown} --- @@ -22,7 +22,7 @@ library(dplyr, warn.conflicts = FALSE) # Introduction -This article describes creating an Events SDTM domain using the `sdtm.oak` package. Examples are currently presented and tested in the context of the CM domain. +This article describes creating an Interventions SDTM domain using the `sdtm.oak` package. Examples are currently presented and tested in the context of the CM domain. # Raw data