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test_log.txt
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test_log.txt
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INFO:root:Making log file at test_log.txt
INFO:root:Final query is lantana
DEBUG:root:*/submitting RESTful query (I)*/
DEBUG:root:*/RESTful request for fulltext.xml (D)*/
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): www.ebi.ac.uk:443
DEBUG:urllib3.connectionpool:https://www.ebi.ac.uk:443 "POST /europepmc/webservices/rest/searchPOST HTTP/1.1" 200 None
DEBUG:root:*/Got the Query Result */
DEBUG:root:Time elapsed: 13.24158525466919
INFO:root:Total Hits are 1910
DEBUG:root:Reading Query Result for paper 1
DEBUG:root:list index out of range
WARNING:root:html url not found for paper 1
DEBUG:root:list index out of range
WARNING:root:pdf url not found for paper 1
DEBUG:root:Wrote Meta Data to a dictionary that will be written to all the chosen metadata file formats for paper PMC8190976
DEBUG:root:Reading Query Result for paper 2
DEBUG:root:'keywordList'
WARNING:root:Keywords not found for paper 2
DEBUG:root:Wrote Meta Data to a dictionary that will be written to all the chosen metadata file formats for paper PMC8112658
DEBUG:root:Reading Query Result for paper 3
DEBUG:root:'keywordList'
WARNING:root:Keywords not found for paper 3
DEBUG:root:Wrote Meta Data to a dictionary that will be written to all the chosen metadata file formats for paper PMC8110560
DEBUG:root:Reading Query Result for paper 4
DEBUG:root:Wrote Meta Data to a dictionary that will be written to all the chosen metadata file formats for paper PMC8161263
DEBUG:root:Reading Query Result for paper 5
DEBUG:root:string indices must be integers
WARNING:root:Author list not found for paper 5
DEBUG:root:Wrote Meta Data to a dictionary that will be written to all the chosen metadata file formats for paper PMC7645447
DEBUG:root:Reading Query Result for paper 6
DEBUG:root:Wrote Meta Data to a dictionary that will be written to all the chosen metadata file formats for paper PMC8183526
DEBUG:root:Reading Query Result for paper 7
DEBUG:root:Wrote Meta Data to a dictionary that will be written to all the chosen metadata file formats for paper PMC8258845
DEBUG:root:Reading Query Result for paper 8
DEBUG:root:string indices must be integers
WARNING:root:Author list not found for paper 8
DEBUG:root:Wrote Meta Data to a dictionary that will be written to all the chosen metadata file formats for paper PMC7455955
DEBUG:root:Reading Query Result for paper 9
DEBUG:root:'keywordList'
WARNING:root:Keywords not found for paper 9
DEBUG:root:Wrote Meta Data to a dictionary that will be written to all the chosen metadata file formats for paper PMC8178325
DEBUG:root:Reading Query Result for paper 10
DEBUG:root:Wrote Meta Data to a dictionary that will be written to all the chosen metadata file formats for paper PMC7915326
DEBUG:root:*/saving xml to per-document directories (CTrees) (D)*/
INFO:root:Saving XML files to C:\Users\shweata\lantana_test_10_4\*\fulltext.xml
DEBUG:root:*/Making the Request to get full text xml*/
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): www.ebi.ac.uk:443
DEBUG:urllib3.connectionpool:https://www.ebi.ac.uk:443 "GET /europepmc/webservices/rest/PMC8190976/fullTextXML HTTP/1.1" 200 None
DEBUG:root:Time elapsed: 1.3544611930847168
DEBUG:root:*/Updating the json*/
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): www.ebi.ac.uk:443
DEBUG:urllib3.connectionpool:https://www.ebi.ac.uk:443 "GET /europepmc/webservices/rest/PMC8112658/fullTextXML HTTP/1.1" 200 None
DEBUG:root:Time elapsed: 2.013843059539795
DEBUG:root:*/Updating the json*/
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): www.ebi.ac.uk:443
DEBUG:urllib3.connectionpool:https://www.ebi.ac.uk:443 "GET /europepmc/webservices/rest/PMC8110560/fullTextXML HTTP/1.1" 200 None
DEBUG:root:Time elapsed: 1.5126020908355713
DEBUG:root:*/Updating the json*/
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): www.ebi.ac.uk:443
DEBUG:urllib3.connectionpool:https://www.ebi.ac.uk:443 "GET /europepmc/webservices/rest/PMC8161263/fullTextXML HTTP/1.1" 200 None
DEBUG:root:Time elapsed: 1.6912410259246826
DEBUG:root:*/Updating the json*/
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): www.ebi.ac.uk:443
DEBUG:urllib3.connectionpool:https://www.ebi.ac.uk:443 "GET /europepmc/webservices/rest/PMC7645447/fullTextXML HTTP/1.1" 200 None
DEBUG:root:Time elapsed: 1.7123658657073975
DEBUG:root:*/Updating the json*/
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): www.ebi.ac.uk:443
DEBUG:urllib3.connectionpool:https://www.ebi.ac.uk:443 "GET /europepmc/webservices/rest/PMC8183526/fullTextXML HTTP/1.1" 200 None
DEBUG:root:Time elapsed: 0.9821827411651611
DEBUG:root:*/Updating the json*/
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): www.ebi.ac.uk:443
DEBUG:urllib3.connectionpool:https://www.ebi.ac.uk:443 "GET /europepmc/webservices/rest/PMC8258845/fullTextXML HTTP/1.1" 200 None
DEBUG:root:Time elapsed: 1.532994031906128
DEBUG:root:*/Updating the json*/
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): www.ebi.ac.uk:443
DEBUG:urllib3.connectionpool:https://www.ebi.ac.uk:443 "GET /europepmc/webservices/rest/PMC7455955/fullTextXML HTTP/1.1" 200 None
DEBUG:root:Time elapsed: 1.6499724388122559
DEBUG:root:*/Updating the json*/
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): www.ebi.ac.uk:443
DEBUG:urllib3.connectionpool:https://www.ebi.ac.uk:443 "GET /europepmc/webservices/rest/PMC8178325/fullTextXML HTTP/1.1" 200 None
DEBUG:root:Time elapsed: 1.883009910583496
DEBUG:root:*/Updating the json*/
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): www.ebi.ac.uk:443
DEBUG:urllib3.connectionpool:https://www.ebi.ac.uk:443 "GET /europepmc/webservices/rest/PMC7915326/fullTextXML HTTP/1.1" 200 None
DEBUG:root:Time elapsed: 2.1067168712615967
DEBUG:root:*/Updating the json*/