From b8a9e261b4af977c53da00814000351e2414f829 Mon Sep 17 00:00:00 2001
From: Sam Park <samp1800@live.com>
Date: Tue, 25 Jun 2024 13:36:44 -0400
Subject: [PATCH] address r cmd check errors

---
 NAMESPACE          | 1 +
 R/pepr.R           | 1 +
 R/utils.R          | 3 +--
 man/saveProject.Rd | 6 ++----
 4 files changed, 5 insertions(+), 6 deletions(-)

diff --git a/NAMESPACE b/NAMESPACE
index f2f0ebd..2c9fb90 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -27,6 +27,7 @@ exportMethods("$")
 exportMethods("[")
 exportMethods("[[")
 import(RCurl)
+import(httr)
 import(pryr)
 import(stringr)
 import(yaml)
diff --git a/R/pepr.R b/R/pepr.R
index 708b37f..bd09605 100644
--- a/R/pepr.R
+++ b/R/pepr.R
@@ -8,6 +8,7 @@
 #' @import yaml
 #' @import stringr
 #' @import pryr
+#' @import httr
 #' @importFrom tidyr unnest
 #'
 #' @references 
diff --git a/R/utils.R b/R/utils.R
index 8740adf..469e3ad 100644
--- a/R/utils.R
+++ b/R/utils.R
@@ -479,9 +479,8 @@ fetchPEP = function(registryPath, raw = TRUE) {
 #' This is a helper that saves a PEP Project to a local output directory
 #'
 #' @param project a PEP Project
-#' @param projectDir a string for the output directory, defaults to current working directory
+#' @param outputDir a string for the output directory, defaults to current working directory
 #' @param overwrite a boolean for whether to overwrite an existing project at the output directory
-#' @param sampleTableIndex a string indicating the sample attribute that is used
 #' 
 #' @return a boolean, TRUE if the save was successful and FALSE if otherwise
 #' @export
diff --git a/man/saveProject.Rd b/man/saveProject.Rd
index 193bb3a..fa04237 100644
--- a/man/saveProject.Rd
+++ b/man/saveProject.Rd
@@ -9,11 +9,9 @@ saveProject(project = NULL, outputDir = getwd(), overwrite = FALSE)
 \arguments{
 \item{project}{a PEP Project}
 
-\item{overwrite}{a boolean for whether to overwrite an existing project at the output directory}
-
-\item{projectDir}{a string for the output directory, defaults to current working directory}
+\item{outputDir}{a string for the output directory, defaults to current working directory}
 
-\item{sampleTableIndex}{a string indicating the sample attribute that is used}
+\item{overwrite}{a boolean for whether to overwrite an existing project at the output directory}
 }
 \value{
 a boolean, TRUE if the save was successful and FALSE if otherwise