From 9649c42efa0cbddaf26afb130b41c4a7a5b9d586 Mon Sep 17 00:00:00 2001
From: Khoroshevskyi <sasha99250@gmail.com>
Date: Thu, 21 Nov 2024 18:20:18 -0500
Subject: [PATCH] 1. added timeout 10 sec for responses 2. added unwrapping for
 reg path

---
 docs/changelog.md          |  5 +++++
 pephubclient/__init__.py   |  2 +-
 pephubclient/helpers.py    | 10 ++++++++++
 tests/test_manual.py       |  1 -
 tests/test_pephubclient.py |  1 -
 5 files changed, 16 insertions(+), 3 deletions(-)

diff --git a/docs/changelog.md b/docs/changelog.md
index 5237b03..60b4ff2 100644
--- a/docs/changelog.md
+++ b/docs/changelog.md
@@ -3,6 +3,11 @@
 This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html) and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) format.
 
 
+## [0.4.5] - 2024-11-21
+### Added
+- Function for unwrapping PEPhub registry path
+- Timeout for requests
+
 ## [0.4.4] - 2024-08-21
 ### Fixed
 - Project annotation model
diff --git a/pephubclient/__init__.py b/pephubclient/__init__.py
index f950988..a099d01 100644
--- a/pephubclient/__init__.py
+++ b/pephubclient/__init__.py
@@ -4,7 +4,7 @@
 import coloredlogs
 
 __app_name__ = "pephubclient"
-__version__ = "0.4.4"
+__version__ = "0.4.5"
 __author__ = "Oleksandr Khoroshevskyi, Rafal Stepien"
 
 
diff --git a/pephubclient/helpers.py b/pephubclient/helpers.py
index f2911ce..dcd9b51 100644
--- a/pephubclient/helpers.py
+++ b/pephubclient/helpers.py
@@ -45,6 +45,7 @@ def send_request(
             headers=headers,
             params=params,
             json=json,
+            timeout=10,
         )
         if request_return.status_code == 401:
             if (
@@ -160,6 +161,15 @@ def is_registry_path(input_string: str) -> bool:
     return True
 
 
+def unwrap_registry_path(input_string: str) -> RegistryPath:
+    """
+    Unwrap registry path from string
+    :param str input_string: path to the PEP (or registry path)
+    :return RegistryPath: RegistryPath object
+    """
+    return RegistryPath(**parse_registry_path(input_string))
+
+
 def _build_filename(registry_path: RegistryPath) -> str:
     """
     Takes query string and creates output filename to save the project to.
diff --git a/tests/test_manual.py b/tests/test_manual.py
index 1848210..cac8be0 100644
--- a/tests/test_manual.py
+++ b/tests/test_manual.py
@@ -4,7 +4,6 @@
 
 @pytest.mark.skip(reason="Manual test")
 class TestViewsManual:
-
     def test_get(self):
         ff = PEPHubClient().view.get(
             "databio",
diff --git a/tests/test_pephubclient.py b/tests/test_pephubclient.py
index 5c89177..211a143 100644
--- a/tests/test_pephubclient.py
+++ b/tests/test_pephubclient.py
@@ -231,7 +231,6 @@ def test_is_registry_path(self, input_str, expected_output):
 
 
 class TestSamples:
-
     def test_get(self, mocker):
         return_value = {
             "genome": "phc_test1",