diff --git a/man/dot-insertPEP.Rd b/man/dot-insertPEP.Rd
deleted file mode 100644
index 1c8dc92..0000000
--- a/man/dot-insertPEP.Rd
+++ /dev/null
@@ -1,19 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/functions.R
-\name{.insertPEP}
-\alias{.insertPEP}
-\title{Insert a PEP metadata in a metadata slot of Annotated}
-\usage{
-.insertPEP(object, pep)
-}
-\arguments{
-\item{object}{an object of \code{\link[S4Vectors]{Annotated-class}}}
-
-\item{pep}{an object of class \code{\link[pepr]{Project-class}}}
-}
-\value{
-an object of the same class as the object argument but enriched with the metadata from the pep argument
-}
-\description{
-This function inserts the PEP (\code{\link[pepr]{Project-class}}) into the metadata slot of objects that extend the \code{\link[S4Vectors]{Annotated-class}}
-}
diff --git a/man/dot-isAbsolute.Rd b/man/dot-isAbsolute.Rd
deleted file mode 100644
index 9a91ca1..0000000
--- a/man/dot-isAbsolute.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/utils.R
-\name{.isAbsolute}
-\alias{.isAbsolute}
-\title{Determine whether a path is absolute.}
-\usage{
-.isAbsolute(path)
-}
-\arguments{
-\item{path}{The path to check for seeming absolute-ness.}
-}
-\value{
-Flag indicating whether the \code{path} appears to be absolute.
-}
-\description{
-Determine whether a path is absolute.
-}
diff --git a/man/dot-makeAbsPath.Rd b/man/dot-makeAbsPath.Rd
deleted file mode 100644
index 8d5806d..0000000
--- a/man/dot-makeAbsPath.Rd
+++ /dev/null
@@ -1,19 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/utils.R
-\name{.makeAbsPath}
-\alias{.makeAbsPath}
-\title{Create an absolute path from a primary target and a parent candidate.}
-\usage{
-.makeAbsPath(perhapsRelative, parent)
-}
-\arguments{
-\item{perhapsRelative:}{Path to primary target directory.}
-
-\item{parent:}{Path to parent folder to use if target isn't absolute.}
-}
-\value{
-Target itself if already absolute, else target nested within parent.
-}
-\description{
-Create an absolute path from a primary target and a parent candidate.
-}