Species being all filtered out for tree min

[Kekananen]

When running on 16S data with prevalence and gtdb selected. Runs fine with UHGP

Quitting from lines 40-100 [setup] (phylogenize-report.Rmd)
Error in pz.error():
! All trees had less than 2.5% of species observed. Either a very small ASV table was provided, read depth was very shallow, the right database was not selected or very few ASVs mapped to entries in the database.
Backtrace:

1. phylogenize::adjust.db(pz.db, abd.meta)
2. phylogenize::pz.error(...)
   at phylogenize/R/report-functions.R:886:9
   Execution halted

[Kekananen]

No values are passing passed.pct <- nw(pct.obs >= opts('pctmin'))

[Kekananen]

Okay fixed the tree file which has some duplicate labels (string and integer). This still did not fix the issue however, was good to fix regardless.