Update python dependencies

[afuetterer]

Some dependency versions are quite dated. Let's update those.

Versions

$ python -m pip list --outdated
Package                  Version Latest Type
------------------------ ------- ------ -----
beautifulsoup4           4.8.2   4.12.2 wheel
chardet                  3.0.4   5.2.0  wheel
click                    7.1.2   8.1.7  wheel
configparser             5.0.2   6.0.0  wheel
connexion                2.9.0   2.14.2 wheel
extruct                  0.13.0  0.16.0 wheel
Flask                    1.1.4   2.3.3  wheel
Flask-Cors               3.0.10  4.0.0  wheel
Flask-Limiter            2.0.0   3.5.0  wheel
idna                     2.10    3.4    wheel
IDUtils                  1.1.14  1.2.1  wheel
itsdangerous             1.1.0   2.1.2  wheel
Jinja2                   2.11.3  3.1.2  wheel 
jmespath                 0.10.0  1.0.1  wheel
jsonschema               3.2.0   4.19.0 wheel
levenshtein              0.12.0  0.21.1 wheel
MarkupSafe               2.0.1   2.1.3  wheel
openapi-schema-validator 0.1.6   0.6.0  wheel
openapi-spec-validator   0.3.3   0.6.0  wheel
pandas                   1.5.3   2.1.0  wheel
pyrsistent               0.16.1  0.19.3 wheel
PyYAML                   5.3.1   6.0.1  wheel
rapidfuzz                3.1.2   3.2.0  wheel
rdflib                   6.1.1   7.0.0  wheel
requests                 2.24.0  2.31.0 wheel
SPARQLWrapper            1.8.5   2.0.0  wheel
tika                     1.25    2.6.0  sdist
tldextract               3.1.2   3.4.4  wheel
urlextract               1.2.0   1.8.0  wheel
urllib3                  1.25.11 2.0.4  wheel
Werkzeug                 1.0.1   2.3.7  wheel

Tasks

• autosemver chore: remove obsolete autosemver dependency #376
• beautifulsoup4 chore: update python dependencies #407
• lxml chore: update python dependencies #407
• jmespath chore: update python dependencies #407
• configparser chore: update python dependencies #407
• idutils chore: update python dependencies #407
• requests chore: update python dependencies #407
• waitress chore: update python dependencies #407
• remove werkzeug (transitive dependency (connexion, flask)) chore: update python dependencies #407
• remove markupsafe (transitive dependency (connexion, jinja2)) chore: update python dependencies #407
• flask-cors chore: update python dependencies #407
• levenshtein chore: update python dependencies #407
• rapidfuzz chore: update python dependencies #407
• pyld chore: update python dependencies #407
• feedparser chore: update python dependencies #407
• connexion[swagger-ui]
• pandas -> update requires Python >=3.9 chore: update remaining python dependencies #410
• extruct: https://github.com/scrapinghub/extruct/blob/master/HISTORY.rst chore: update remaining python dependencies #410
• flask-limiter: https://github.com/alisaifee/flask-limiter/blob/master/HISTORY.rst chore: update remaining python dependencies #410
• pyyaml chore: update remaining python dependencies #410
• tldextract: https://github.com/john-kurkowski/tldextract/blob/master/CHANGELOG.md chore: update remaining python dependencies #410
• urlextract: https://github.com/lipoja/URLExtract/blob/master/CHANGELOG.rst chore: update remaining python dependencies #410
• tika: chrismattmann/tika-python@1.25...2.6.0 chore: update remaining python dependencies #410
• sparqlwrapper: https://github.com/RDFLib/sparqlwrapper/blob/master/ChangeLog.txt chore: update remaining python dependencies #410
• rdflib: https://github.com/RDFLib/rdflib/blob/main/CHANGELOG.md chore: update remaining python dependencies #410
• flask updated to 2.2.5, 2.3 is not compatible with connexion chore: update remaining python dependencies #410

Relevant

• pyRdfa3 -> project has been archived by the owner on Jun 21, 2022

Related: #357 #409

[afuetterer]

Is there a reason for the version constraint flask-limiter<=2.0.0 @huberrob?
What was the intention?

[huberrob]

I think there was a conflict with connexion or Werkzeug, but not sure..

[afuetterer]

Alright, I will investigate. I updated to the last version 2.14 of connexion in #407. Which works fine.
If it works with flask-limiter 3.5 I will drop this constraint.

connexion team is also working on a version 3.0.0.

[afuetterer]

All done.