From b9f9e9cd97dec70a42c832ea3cdbfa07e6437fd4 Mon Sep 17 00:00:00 2001
From: Heinz-Alexander Fuetterer <35225576+afuetterer@users.noreply.github.com>
Date: Mon, 15 Jan 2024 15:15:35 +0100
Subject: [PATCH] ci: add coverage badge and report

---
 .github/workflows/ci.yml | 14 +++++++++++---
 .pre-commit-config.yaml  |  1 +
 README.md                |  3 ++-
 pyproject.toml           |  7 +++----
 4 files changed, 17 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index dc41dc21..044cd03e 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -71,6 +71,8 @@ jobs:
 
   tests:
     runs-on: ubuntu-22.04
+    permissions:
+      contents: write
     steps:
     - uses: actions/checkout@v4
     - name: Set up Python 3.11
@@ -84,9 +86,6 @@ jobs:
         python -m pip install --upgrade hatch
     - name: Run test suite with coverage
       run: hatch run cov-ci
-    - name: Generate badges
-      if: always()
-      run: hatch run badges
     - name: Upload test results
       if: always()
       uses: actions/upload-artifact@v4
@@ -101,6 +100,15 @@ jobs:
         name: coverage-results
         retention-days: 1
         path: pytest-cobertura.xml
+    - run: rm ./reports/coverage/.gitignore
+    - name: Generate coverage badge
+      if: github.ref == 'refs/heads/master'
+      run: hatch run cov-badge
+    - name: Deploy reports to GitHub Pages
+      if: github.ref == 'refs/heads/master'
+      uses: JamesIves/github-pages-deploy-action@65b5dfd4f5bcd3a7403bbc2959c144256167464e # v4.5.0
+      with:
+        folder: ./reports
 
   event_file:
     runs-on: ubuntu-22.04
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 8626ec6b..fa64609e 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -3,6 +3,7 @@ repos:
   rev: v4.5.0
   hooks:
   - id: end-of-file-fixer
+    exclude_types: [svg]
   - id: mixed-line-ending
     types: [python]
   - id: trailing-whitespace
diff --git a/README.md b/README.md
index 2672ea11..1cb83914 100644
--- a/README.md
+++ b/README.md
@@ -4,10 +4,11 @@ Developers: [Robert Huber](mailto:rhuber@marum.de), [Anusuriya Devaraju](mailto:
 Thanks to [Heinz-Alexander Fuetterer](https://github.com/afuetterer) for his contributions and his help in cleaning up the code.
 
 [![CI](https://github.com/pangaea-data-publisher/fuji/actions/workflows/ci.yml/badge.svg)](https://github.com/pangaea-data-publisher/fuji/actions/workflows/ci.yml)
+[![Coverage](https://pangaea-data-publisher.github.io/fuji/coverage/coveragebadge.svg)](https://pangaea-data-publisher.github.io/fuji/coverage/)
+
 [![Publish Docker image](https://github.com/pangaea-data-publisher/fuji/actions/workflows/publish-docker.yml/badge.svg)](https://github.com/pangaea-data-publisher/fuji/actions/workflows/publish-docker.yml)
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4063720.svg)](https://doi.org/10.5281/zenodo.4063720)
 
-
 ## Overview
 
 F-UJI is a web service to programmatically assess FAIRness of research data objects based on [metrics](https://doi.org/10.5281/zenodo.3775793) developed by the [FAIRsFAIR](https://www.fairsfair.eu/) project.
diff --git a/pyproject.toml b/pyproject.toml
index 811421c1..77466783 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -79,7 +79,7 @@ report = [
   "jupyter~=1.0"
 ]
 testing = [
-  "genbadge[tests]~=1.1",
+  "genbadge[coverage]~=1.1",
   "pytest~=7.4",
   "pytest-cov~=4.1",
   "pytest-randomly~=3.15",
@@ -122,10 +122,9 @@ features = [
 ]
 
 [tool.hatch.envs.default.scripts]
-badges = "genbadge tests --input-file=pytest-junit.xml"
 cov = "pytest --cov {args}"
-cov-ci = "pytest --cov --junitxml=pytest-junit.xml --cov-report=xml:pytest-cobertura.xml {args}"
-cov-html = "pytest --cov --cov-report=html {args}"
+cov-badge = "genbadge coverage --input-file=pytest-cobertura.xml --output-file=./reports/coverage/coveragebadge.svg"
+cov-ci = "pytest --cov --junitxml=pytest-junit.xml --cov-report=xml:pytest-cobertura.xml --cov-report=html:./reports/coverage/ {args}"
 lint = "pre-commit run --all-files --color=always {args}"
 test = "pytest {args}"