diff --git a/fuji_server/data/access_rights.json b/fuji_server/data/access_rights.json deleted file mode 100644 index 9cd1aab8..00000000 --- a/fuji_server/data/access_rights.json +++ /dev/null @@ -1,171 +0,0 @@ -{ - "COAR_access_right": { - "id": "COAR_access_rights", - "identifier": { - "type": "namespace", - "value": "https://vocabularies.coar-repositories.org/access_rights" - }, - "label": "COAR access rights", - "members": [ - { - "access_condition": "embargoed", - "id": "c_f1cf", - "label": "embargoed access", - "source": "coar-repositories.org", - "uri": "http://purl.org/coar/access_right/c_f1cf" - }, - { - "access_condition": "metadataonly", - "id": "c_14cb", - "label": "metadata only access", - "source": "coar-repositories.org", - "uri": "http://purl.org/coar/access_right/c_14cb" - }, - { - "access_condition": "restricted", - "id": "c_16ec", - "label": "restricted access", - "source": "coar-repositories.org", - "uri": "http://purl.org/coar/access_right/c_16ec" - }, - { - "access_condition": "public", - "id": "c_abf2", - "label": "open access", - "source": "coar-repositories.org", - "uri": "http://purl.org/coar/access_right/c_abf2" - } - ], - "source": "coar-repositories.org" - }, - "EPRINTS_access_rights": { - "id": "EPRINTS_access_rights", - "identifier": { - "type": "namespace", - "value": "http://purl.org/eprint/accessRights/" - }, - "label": "ePrints access rights vocabulary", - "members": [ - { - "access_condition": "public", - "id": "OpenAccess", - "label": "Open Access", - "source": "ukoln.ac.uk", - "uri": "http://purl.org/eprint/accessRights/OpenAccess" - }, - { - "access_condition": "restricted", - "id": "RestrictedAccess", - "label": "Restricted Access", - "source": "ukoln.ac.uk", - "uri": "http://purl.org/eprint/accessRights/RestrictedAccess" - }, - { - "access_condition": "closed", - "id": "ClosedAccess", - "label": "Closed Access", - "source": "ukoln.ac.uk", - "uri": "http://purl.org/eprint/accessRights/ClosedAccess" - } - ], - "source": "ukoln.ac.uk" - }, - "EU_access_rights": { - "id": "EU_access_rights", - "identifier": { - "type": "namespace", - "value": "http://publications.europa.eu/resource/authority/access-right/" - }, - "label": "EU publications office access-right authority table", - "members": [ - { - "access_condition": "restricted", - "id": "NON_PUBLIC", - "label": "non-public", - "source": "publications.europa.eu", - "uri": "http://publications.europa.eu/resource/authority/access-right/NON_PUBLIC" - }, - { - "access_condition": "embargoed", - "id": "OP_DATPRO", - "label": "Provisional data", - "source": "publications.europa.eu", - "uri": "http://publications.europa.eu/resource/authority/access-right/OP_DATPRO" - }, - { - "access_condition": "public", - "id": "PUBLIC", - "label": "public", - "source": "publications.europa.eu", - "uri": "http://publications.europa.eu/resource/authority/access-right/PUBLIC" - }, - { - "access_condition": "restricted", - "id": "RESTRICTED", - "label": "restricted", - "source": "publications.europa.eu", - "uri": "http://publications.europa.eu/resource/authority/access-right/RESTRICTED" - }, - { - "access_condition": "restricted", - "id": "SENSITIVE", - "label": "sensitive", - "source": "publications.europa.eu", - "uri": "http://publications.europa.eu/resource/authority/access-right/SENSITIVE" - }, - { - "access_condition": "restricted", - "id": "CONFIDENTIAL", - "label": "confidential", - "source": "publications.europa.eu", - "uri": "http://publications.europa.eu/resource/authority/access-right/CONFIDENTIAL" - }, - { - "access_condition": "public", - "id": "NORMAL", - "label": "normal", - "source": "publications.europa.eu", - "uri": "http://publications.europa.eu/resource/authority/access-right/NORMAL" - } - ], - "source": "publications.europa.eu" - }, - "OPENAIRE_access_rights": { - "id": "OPENAIRE_access_rights", - "identifier": { - "value": "info:eu-repo/semantics/" - }, - "label": "OpenAire access rights list", - "members": [ - { - "access_condition": "closed", - "id": "closedAccess", - "label": "closed Access", - "source": "openaire.eu", - "uri": "info:eu-repo/semantics/closedAccess" - }, - { - "access_condition": "embargoed", - "id": "embargoedAccess", - "label": "embargoed Access", - "source": "openaire.eu", - "uri": "info:eu-repo/semantics/embargoedAccess" - }, - { - "access_condition": "restricted", - "id": "restrictedAccess", - "label": "restricted Access", - "source": "openaire.eu", - "uri": "info:eu-repo/semantics/restrictedAccess" - }, - { - "access_condition": "public", - "id": "openAccess", - "label": "open Access", - "source": "openaire.eu", - "uri": "info:eu-repo/semantics/openAccess" - } - ], - "source": "openaire.eu" - } -} diff --git a/fuji_server/data/access_rights.yaml b/fuji_server/data/access_rights.yaml new file mode 100644 index 00000000..df2aee15 --- /dev/null +++ b/fuji_server/data/access_rights.yaml @@ -0,0 +1,121 @@ +COAR_access_right: + id: COAR_access_rights + identifier: + type: namespace + value: https://vocabularies.coar-repositories.org/access_rights + label: COAR access rights + members: + - access_condition: embargoed + id: c_f1cf + label: embargoed access + source: coar-repositories.org + uri: http://purl.org/coar/access_right/c_f1cf + - access_condition: metadataonly + id: c_14cb + label: metadata only access + source: coar-repositories.org + uri: http://purl.org/coar/access_right/c_14cb + - access_condition: restricted + id: c_16ec + label: restricted access + source: coar-repositories.org + uri: http://purl.org/coar/access_right/c_16ec + - access_condition: public + id: c_abf2 + label: open access + source: coar-repositories.org + uri: http://purl.org/coar/access_right/c_abf2 + source: coar-repositories.org +EPRINTS_access_rights: + id: EPRINTS_access_rights + identifier: + type: namespace + value: http://purl.org/eprint/accessRights/ + label: ePrints access rights vocabulary + members: + - access_condition: public + id: OpenAccess + label: Open Access + source: ukoln.ac.uk + uri: http://purl.org/eprint/accessRights/OpenAccess + - access_condition: restricted + id: RestrictedAccess + label: Restricted Access + source: ukoln.ac.uk + uri: http://purl.org/eprint/accessRights/RestrictedAccess + - access_condition: closed + id: ClosedAccess + label: Closed Access + source: ukoln.ac.uk + uri: http://purl.org/eprint/accessRights/ClosedAccess + source: ukoln.ac.uk +EU_access_rights: + id: EU_access_rights + identifier: + type: namespace + value: http://publications.europa.eu/resource/authority/access-right/ + label: EU publications office access-right authority table + members: + - access_condition: restricted + id: NON_PUBLIC + label: non-public + source: publications.europa.eu + uri: http://publications.europa.eu/resource/authority/access-right/NON_PUBLIC + - access_condition: embargoed + id: OP_DATPRO + label: Provisional data + source: publications.europa.eu + uri: http://publications.europa.eu/resource/authority/access-right/OP_DATPRO + - access_condition: public + id: PUBLIC + label: public + source: publications.europa.eu + uri: http://publications.europa.eu/resource/authority/access-right/PUBLIC + - access_condition: restricted + id: RESTRICTED + label: restricted + source: publications.europa.eu + uri: http://publications.europa.eu/resource/authority/access-right/RESTRICTED + - access_condition: restricted + id: SENSITIVE + label: sensitive + source: publications.europa.eu + uri: http://publications.europa.eu/resource/authority/access-right/SENSITIVE + - access_condition: restricted + id: CONFIDENTIAL + label: confidential + source: publications.europa.eu + uri: http://publications.europa.eu/resource/authority/access-right/CONFIDENTIAL + - access_condition: public + id: NORMAL + label: normal + source: publications.europa.eu + uri: http://publications.europa.eu/resource/authority/access-right/NORMAL + source: publications.europa.eu +OPENAIRE_access_rights: + id: OPENAIRE_access_rights + identifier: + value: info:eu-repo/semantics/ + label: OpenAire access rights list + members: + - access_condition: closed + id: closedAccess + label: closed Access + source: openaire.eu + uri: info:eu-repo/semantics/closedAccess + - access_condition: embargoed + id: embargoedAccess + label: embargoed Access + source: openaire.eu + uri: info:eu-repo/semantics/embargoedAccess + - access_condition: restricted + id: restrictedAccess + label: restricted Access + source: openaire.eu + uri: info:eu-repo/semantics/restrictedAccess + - access_condition: public + id: openAccess + label: open Access + source: openaire.eu + uri: info:eu-repo/semantics/openAccess + source: openaire.eu diff --git a/fuji_server/data/file_formats.json b/fuji_server/data/file_formats.json deleted file mode 100644 index 535c6b62..00000000 --- a/fuji_server/data/file_formats.json +++ /dev/null @@ -1,2296 +0,0 @@ -{ - "3d_studio_format": { - "ext": [ - "*.3ds" - ], - "mime": [ - "image/x-3ds", - "application/x-3ds" - ], - "name": "3D Studio format", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "aac_advanced_audio_coding_file_format": { - "ext": [ - "*.aac" - ], - "mime": [ - "audio/x-aac", - "audio/aac" - ], - "name": "AAC (Advanced Audio Coding) File Format", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "adobe_digital_negative_dng_": { - "ext": [ - "*.dng" - ], - "mime": [ - "image/x-adobe-dng" - ], - "name": "Adobe Digital Negative (DNG)", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "aiff_audio_interchange_file_format_": { - "ext": [ - "*.aiff", - "*.aff", - "*.aifc", - "*.aif", - "*.ief" - ], - "mime": [ - "audio/x-midi", - "sound/aiff", - "audio/aiff", - "audio/x-rmf", - "audio/x-pn-aiff", - "audio/x-gsm", - "audio/x-aiff", - "audio/rmf", - "audio/vnd.qcelp" - ], - "name": "AIFF (Audio Interchange File Format)", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "apple_lossless_audio_codec_alac_": { - "ext": [ - "*.m4a" - ], - "mime": [ - "audio/mp4" - ], - "name": "Apple Lossless Audio Codec (ALAC)", - "reason": [ - "open format" - ], - "source": [ - "various" - ] - }, - "apple_numbers": { - "ext": [ - "*.numbers", - "*.numbers.zip" - ], - "mime": [ - "application/vnd.apple.numbers" - ], - "name": "Apple Numbers", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "av1_image_file_format_avif_": { - "ext": [ - "*.avifs", - "*.avif" - ], - "mime": [ - "image/avif-sequence", - "image/avif" - ], - "name": "AV1 Image File Format\u00a0(AVIF)", - "reason": [ - "open format" - ], - "source": [ - "various" - ] - }, - "avi_audio_video_interleaved_file_format": { - "ext": [ - "*.avi" - ], - "mime": [ - "application/x-troff-msvideo", - "audio/avi", - "video/x-msvideo", - "video/msvideo", - "video/vnd.avi", - "video/avi" - ], - "name": "AVI (Audio Video Interleaved) File Format", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "avi_audio_video_interleaved_video_file_format": { - "ext": [ - "*.gvi" - ], - "mime": [ - "video/avi" - ], - "name": "AVI (Audio Video Interleaved) Video File Format", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "bed_browser_extensible_data_": { - "ext": [ - "*.bed" - ], - "mime": [ - "text/x-bed" - ], - "name": "BED (Browser Extensible Data)", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "beilstein_crossfire_file": { - "ext": [ - "*.bsd" - ], - "mime": [ - "chemical/x-crossfire" - ], - "name": "Beilstein Crossfire file", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "c_source_code_file": { - "ext": [ - "*.c" - ], - "mime": [ - "text/x-c" - ], - "name": "C Source Code File", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "cactvs_format": { - "ext": [ - "*.cascii", - "*.ctx" - ], - "mime": [ - "chemical/x-cactus", - "chemical/x-cactus-ascii" - ], - "name": "CACTVS format", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "ccdc_isostar_library": { - "ext": [ - "*.istr" - ], - "mime": [ - "chemical/x-isostar" - ], - "name": "CCDC IsoStar Library", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "ccp4_file_format": { - "ext": [ - "*.ccp4" - ], - "mime": [ - "application/CCP4-mtz-phases", - "application/CCP4-mtz-freerflag", - "application/CCP4-mtz-observed", - "application/CCP4-unmerged-experimental", - "application/CCP4-mtz-map" - ], - "name": "CCP4 file format", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "cd_audio_cd_audio_track_shortcut": { - "ext": [ - "*.cda" - ], - "mime": [ - "audio/audiocd" - ], - "name": "CD Audio CD Audio track shortcut", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "cfd_general_notation_system": { - "ext": [ - "*.cgns" - ], - "mime": [ - "application/cgns" - ], - "name": "CFD General Notation System", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "chem3d_format": { - "ext": [ - "*.c3d" - ], - "mime": [ - "chemical/x-chem3d" - ], - "name": "Chem3D Format", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "chemdraw_exchange_file": { - "ext": [ - "*.cdx" - ], - "mime": [ - "chemical/x-cdxml", - "chemical/x-cdx" - ], - "name": "ChemDraw eXchange file", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "chemical_markup_language": { - "ext": [ - "*.cml" - ], - "mime": [ - "chemical/x-cml" - ], - "name": "Chemical Markup Language", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "collada_digital_asset_exchange_format": { - "ext": [ - "*.dae" - ], - "mime": [ - "model/vnd.collada+xml" - ], - "name": "COLLADA digital asset exchange format", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "computer_graphics_metafile": { - "ext": [ - "*.cgm" - ], - "mime": [ - "image/cgm" - ], - "name": "Computer Graphics Metafile", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "crystallographic_information_file": { - "ext": [ - "*.mif", - "*.cif" - ], - "mime": [ - "chemical/x-cif" - ], - "name": "Crystallographic Information File", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "crystalmaker_file": { - "ext": [ - "*.cmdf" - ], - "mime": [ - "chemical/x-cmdf" - ], - "name": "Crystalmaker File", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "daylight_smiles_string": { - "ext": [ - "*.smi" - ], - "mime": [ - "chemical/x-daylight-smiles" - ], - "name": "Daylight SMILES string", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "dbase_table_for_esri_shapefile": { - "ext": [ - "*.dbf", - "*.dbase" - ], - "mime": [ - "application/dbase", - 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"ext": [ - "*.sto" - ], - "mime": [ - "text/x-stockholm-alignment" - ], - "name": "Stockholm format", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "swissprot_sequence_format": { - "ext": [ - "*.sw" - ], - "mime": [ - "chemical/x-swissprot" - ], - "name": "SwissProt sequence format", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "systems_biology_markup_language_sbml_": { - "ext": [ - "*.sbml" - ], - "mime": [ - "application/sbml+xml" - ], - "name": "Systems Biology Markup Language (SBML)", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "tab_ddi_format": { - "ext": [ - "*.zip" - ], - "mime": [ - "application/x-dvn-tabddi-zip" - ], - "name": "TAB DDI Format", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "tagged_image_file_format": { - "ext": [ - "*.tif", - "*.tfx", - "*.tfw", - "*.tiff" - ], - "mime": [ - "image/tiff" - ], - "name": "Tagged Image File Format", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "tripos_molecule_structure_format_": { - "ext": [ - "*.mol2" - ], - "mime": [ - "chemical/x-mol2" - ], - "name": "Tripos molecule structure format ", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "video_object_file_vob_": { - "ext": [ - "*.vob" - ], - "mime": [ - "video/x-ms-vob" - ], - "name": "Video Object File (VOB)", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "vorbis_encoded_audio": { - "ext": [ - "*.wav" - ], - "mime": [ - "audio/vorbis-config", - "audio/vorbis" - ], - "name": "Vorbis encoded audio", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "wave_audio_file_format": { - "ext": [ - "*.wave", - "*.wav" - ], - "mime": [ - "audio/x-wav", - "audio/vnd.wave", - "audio/wave", - "audio/x-pn-wav", - "audio/wav" - ], - "name": "WAVE Audio File Format", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "webp_format": { - "ext": [ - "*.webp" - ], - "mime": [ - "image/webp" - ], - "name": "WebP Format", - "reason": [ - "open format" - ], - "source": [ - "various" - ] - }, - "windows_bitmap_image_file_bmp_": { - "ext": [ - "*.bmp" - ], - "mime": [ - "image/x-ms-bmp", - "image/bmp" - ], - "name": "Windows Bitmap Image File (BMP)", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "windows_media_video": { - "ext": [ - "*.asf", - "*.wmv" - ], - "mime": [ - "video/x-ms-asf", - "video/x-ms-wmv" - ], - "name": "Windows Media Video", - "reason": [ - "long term format" - ], - "source": [ - "ISO/TR 22299" - ] - }, - "wolfram_computable_document_format_cdf_": { - "ext": [ - "*.cdf" - ], - "mime": [ - "application/vnd.wolfram.cdf.text", - "application/vnd.wolfram.cdf" - ], - "name": "Wolfram Computable Document Format (CDF)", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - }, - "x_pixmap_xpm_": { - "ext": [ - "*.xpm", - "*.pm" - ], - "mime": [ - "image/x-xpixmap" - ], - "name": "X PixMap\u00a0(XPM)", - "reason": [ - "open format" - ], - "source": [ - "various" - ] - }, - "xtelplot_file_format": { - "ext": [ - "*.xtel" - ], - "mime": [ - "chemical/x-xtel" - ], - "name": "Xtelplot file format", - "reason": [ - "scientific format" - ], - "source": [ - "various" - ] - } -} diff --git a/fuji_server/data/file_formats.yaml b/fuji_server/data/file_formats.yaml new file mode 100644 index 00000000..07b29b26 --- /dev/null +++ b/fuji_server/data/file_formats.yaml @@ -0,0 +1,1639 @@ +3d_studio_format: + ext: + - '*.3ds' + mime: + - image/x-3ds + - application/x-3ds + name: 3D Studio format + reason: + - scientific format + source: + - various +aac_advanced_audio_coding_file_format: + ext: + - '*.aac' + mime: + - audio/x-aac + - audio/aac + name: AAC (Advanced Audio Coding) File Format + reason: + - long term format + source: + - ISO/TR 22299 +adobe_digital_negative_dng_: + ext: + - '*.dng' + mime: + - image/x-adobe-dng + name: Adobe Digital Negative (DNG) + reason: + - long term format + source: + - ISO/TR 22299 +aiff_audio_interchange_file_format_: + ext: + - '*.aiff' + - '*.aff' + - '*.aifc' + - '*.aif' + - '*.ief' + mime: + - audio/x-midi + - sound/aiff + - audio/aiff + - audio/x-rmf + - audio/x-pn-aiff + - audio/x-gsm + - audio/x-aiff + - audio/rmf + - audio/vnd.qcelp + name: AIFF (Audio Interchange File Format) + reason: + - long term format + source: + - ISO/TR 22299 +apple_lossless_audio_codec_alac_: + ext: + - '*.m4a' + mime: + - audio/mp4 + name: Apple Lossless Audio Codec (ALAC) + reason: + - open format + source: + - various +apple_numbers: + ext: + - '*.numbers' + - '*.numbers.zip' + mime: + - application/vnd.apple.numbers + name: Apple Numbers + reason: + - scientific format + source: + - various +av1_image_file_format_avif_: + ext: + - '*.avifs' + - '*.avif' + mime: + - image/avif-sequence + - image/avif + name: AV1 Image File FormatĀ (AVIF) + reason: + - open format + source: + - various +avi_audio_video_interleaved_file_format: + ext: + - '*.avi' + mime: + - application/x-troff-msvideo + - audio/avi + - video/x-msvideo + - video/msvideo + - video/vnd.avi + - video/avi + name: AVI (Audio Video Interleaved) File Format + reason: + - long term format + source: + - ISO/TR 22299 +avi_audio_video_interleaved_video_file_format: + ext: + - '*.gvi' + mime: + - video/avi + name: AVI (Audio Video Interleaved) Video File Format + reason: + - long term format + source: + - ISO/TR 22299 +bed_browser_extensible_data_: + ext: + - '*.bed' + mime: + - text/x-bed + name: BED (Browser Extensible Data) + reason: + - scientific format + source: + - various +beilstein_crossfire_file: + ext: + - '*.bsd' + mime: + - chemical/x-crossfire + name: Beilstein Crossfire file + reason: + - scientific format + source: + - various +c_source_code_file: + ext: + - '*.c' + mime: + - text/x-c + name: C Source Code File + reason: + - scientific format + source: + - various +cactvs_format: + ext: + - '*.cascii' + - '*.ctx' + mime: + - chemical/x-cactus + - chemical/x-cactus-ascii + name: CACTVS format + reason: + - scientific format + source: + - various +ccdc_isostar_library: + ext: + - '*.istr' + mime: + - chemical/x-isostar + name: CCDC IsoStar Library + reason: + - scientific format + source: + - various +ccp4_file_format: + ext: + - '*.ccp4' + mime: + - application/CCP4-mtz-phases + - application/CCP4-mtz-freerflag + - application/CCP4-mtz-observed + - application/CCP4-unmerged-experimental + - application/CCP4-mtz-map + name: CCP4 file format + reason: + - scientific format + source: + - various +cd_audio_cd_audio_track_shortcut: + ext: + - '*.cda' + mime: + - audio/audiocd + name: CD Audio CD Audio track shortcut + reason: + - long term format + source: + - ISO/TR 22299 +cfd_general_notation_system: + ext: + - '*.cgns' + mime: + - application/cgns + name: CFD General Notation System + reason: + - scientific format + source: + - various +chem3d_format: + ext: + - '*.c3d' + mime: + - chemical/x-chem3d + name: Chem3D Format + reason: + - scientific format + source: + - various +chemdraw_exchange_file: + ext: + - '*.cdx' + mime: + - chemical/x-cdxml + - chemical/x-cdx + name: ChemDraw eXchange file + reason: + - scientific format + source: + - various +chemical_markup_language: + ext: + - '*.cml' + mime: + - chemical/x-cml + name: Chemical Markup Language + reason: + - scientific format + source: + - various +collada_digital_asset_exchange_format: + ext: + - '*.dae' + mime: + - model/vnd.collada+xml + name: COLLADA digital asset exchange format + reason: + - scientific format + source: + - various +computer_graphics_metafile: + ext: + - '*.cgm' + mime: + - image/cgm + name: Computer Graphics Metafile + reason: + - long term format + source: + - ISO/TR 22299 +crystallographic_information_file: + ext: + - '*.mif' + - '*.cif' + mime: + - chemical/x-cif + name: Crystallographic Information File + reason: + - scientific format + source: + - various +crystalmaker_file: + ext: + - '*.cmdf' + mime: + - chemical/x-cmdf + name: Crystalmaker File + reason: + - scientific format + source: + - various +daylight_smiles_string: + ext: + - '*.smi' + mime: + - chemical/x-daylight-smiles + name: Daylight SMILES string + reason: + - scientific format + source: + - various +dbase_table_for_esri_shapefile: + ext: + - '*.dbf' + - '*.dbase' + mime: + - application/dbase + - application/dbf + name: dBASE Table for ESRI Shapefile + reason: + - scientific format + source: + - various +device_independent_bitmap_dib_: + ext: + - '*.dib' + mime: + - image/dib + name: Device-Independent bitmap (DIB) + reason: + - long term format + source: + - ISO/TR 22299 +dicom: + ext: + - '*.dic' + - '*.dcm' + mime: + - application/dicom + - image/dicom-rle + name: DICOM + reason: + - scientific format + source: + - various +dolby_heaac: + ext: + - '*.wav' + mime: + - audio/vnd.dolby.heaac.1 + name: Dolby HEAAC + reason: + - long term format + source: + - ISO/TR 22299 +embl_nucleotide_sequence_format: + ext: + - '*.emb' + mime: + - chemical/x-embl-dl-nucleotide + name: EMBL nucleotide sequence format + reason: + - scientific format + source: + - various +esri_shapefile: + ext: + - '*.prj' + - '*.shx' + - '*.shp' + mime: + - application/prj + - application/zipped-shapefile + - application/x-esri-shape + - application/shx + - application/shp + name: ESRI Shapefile + reason: + - scientific format + source: + - various +esri_spatial_index: + ext: + - '*.sbn' + - '*.sbx' + mime: + - application/sbx + - application/sbn + name: ESRI Spatial Index + reason: + - scientific format + source: + - various +extensible_3d_x3d_file_format_family: + ext: + - '*.x3db' + - '*.x3dbz' + - '*.x3dz' + - '*.x3dv' + - '*.x3d' + - '*.x3dvz' + mime: + - model/x3d+xml + - model/x3d+binary + - model/x3d+fastinfoset + - model/x3d+vrml + - model/x3d-vrml + name: Extensible 3D (X3D) File Format Family + reason: + - long term format + source: + - ISO/TR 22299 +fasta: + ext: + - '*.fasta' + - '*.frn' + - '*.faa' + - '*.fna' + mime: + - chemical/seq-aa-fasta + - chemical/seq-na-fasta + - text/x-fasta + name: FASTA + reason: + - scientific format + source: + - various +fastq: + ext: + - '*.fq' + - '*.fastq' + - '*.fa' + mime: + - chemical/seq-na-fastq + name: FASTQ + reason: + - scientific format + source: + - various +flexible_image_transport_system_fits_: + ext: + - '*.fits' + - '*.fts' + - '*.fit' + mime: + - application/fits + - image/fits + name: Flexible Image Transport System (FITS) + reason: + - scientific format + source: + - various +free_lossless_image_format_flif_: + ext: + - '*.flif' + mime: + - image/flif + name: Free Lossless Image Format (FLIF) + reason: + - open format + source: + - various +gamess_us_ab_initio_input_file: + ext: + - '*.inp' + mime: + - chemical/x-gamess-input + name: GAMESS(US) Ab initio Input File + reason: + - scientific format + source: + - various +gaussian_checkpoint_file: + ext: + - '*.fch' + - '*.fchk' + mime: + - chemical/x-gaussian-checkpoint + name: Gaussian Checkpoint file + reason: + - scientific format + source: + - various +gaussian_cube_file: + ext: + - '*.cub' + mime: + - chemical/x-cube + - chemical/x-gaussian-cube + name: Gaussian Cube file + reason: + - scientific format + source: + - various +gaussian_log_file: + ext: + - '*.gal' + mime: + - chemical/x-gaussian-log + name: Gaussian log file + reason: + - scientific format + source: + - various +genbank_molecular_biology_format: + ext: + - '*.gbk' + - '*.gb' + mime: + - chemical/seq-na-genbank + name: GenBank molecular biology format + reason: + - scientific format + source: + - various +general_feature_format: + ext: + - '*.gff' + mime: + - text/x-gff3 + name: General feature format + reason: + - scientific format + source: + - various +geographic_tagged_image_file_format_geotiff_: + ext: + - '*.tif' + mime: + - image/geotiff + name: Geographic Tagged Image File Format (GeoTIFF) + reason: + - long term format + source: + - ISO/TR 22299 +geojson_a_geographic_data_format_based_on_json: + ext: + - '*.geojson' + mime: + - application/geo+json + name: GeoJSON a geographic data format based on JSON + reason: + - scientific format + source: + - various +gerber_format: + ext: + - '*.gpt' + - '*.gbo' + - '*.gtl' + - '*.gbp' + - '*.gtp' + - '*.gbs' + - '*.gpb' + - '*.gml' + - '*.gbr' + - '*.gto' + - '*.gbl' + - '*.gts' + - '*.gko' + mime: + - application/vnd.gerber + name: Gerber format + reason: + - open format + source: + - various +gnumeric_spreadsheet: + ext: + - '*.gnm' + - '*.gnumeric' + mime: + - application/x-gnumeric + name: Gnumeric spreadsheet + reason: + - scientific format + source: + - various +graphics_interchange_format: + ext: + - '*.gif' + mime: + - image/gif + name: Graphics Interchange Format + reason: + - long term format + - open format + source: + - ISO/TR 22299 + - various +grib: + ext: + - '*.grb1' + - '*.grb2' + - '*.grb' + mime: + - application/x-grib + - application/wmo-grib2 + name: GRIB + reason: + - scientific format + source: + - various +hdf: + ext: + - '*.hdf' + - '*.hdf5' + - '*.h5' + mime: + - application/x-hdf5 + - application/x-hdf + name: HDF + reason: + - scientific format + source: + - various +hyperchen_hin_data_format: + ext: + - '*.hin' + mime: + - chemical/x-hin + name: HyperChen HIN data format + reason: + - scientific format + source: + - various +iso14976_spectroscopic_format: + ext: + - '*.vms' + mime: + - chemical/x-vamas-iso14976 + name: ISO14976 Spectroscopic format + reason: + - scientific format + source: + - various +jcamp_dx_a_chemical_spectroscopy_format: + ext: + - '*.jdx' + mime: + - chemical/x-jcamp-dx + name: JCAMP-DX a chemical spectroscopy format + reason: + - scientific format + source: + - various +jpeg_2000_file_format: + ext: + - '*.jpf' + - '*.jpx' + - '*.jpg' + - '*.jp2' + - '*.mj2' + - '*.jpm' + mime: + - image/jpx + - image/jpeg2000 + - image/x-jpeg2000-image + - image/jp2 + - image/jpm + - image/jpeg2000-image + name: JPEG 2000 File Format + reason: + - long term format + - open format + source: + - ISO/TR 22299 + - various +jpg_joint_photographic_experts_group_file_format: + ext: + - '*.jpf' + - '*.jfif' + - '*.jls' + - '*.jif' + - '*.jmh' + - '*.jpg' + - '*.jp2' + - '*.jpeg' + - '*.jpe' + - '*.j' + - '*.jfi' + - '*.spf' + mime: + - image/jpeg + - application/jpg + - image/jpm + - image/jpg + name: JPG (Joint Photographic Experts Group) File Format + reason: + - long term format + source: + - ISO/TR 22299 +jt_3d_visualization_format: + ext: + - '*.jt' + mime: + - model/jt + name: JT 3D visualization format + reason: + - long term format + source: + - ISO/TR 22299 +jupyter_notebook_file: + ext: + - '*.ipynb' + mime: + - application/x-ipynb+json + name: Jupyter Notebook File + reason: + - scientific format + source: + - various +kinetic_protein_structure_images: + ext: + - '*.kin' + mime: + - chemical/x-kinemage + name: Kinetic (Protein Structure) Images + reason: + - scientific format + source: + - various +lotus_1_2_3_format: + ext: + - '*.wk3' + - '*.wk4' + - '*.wk1' + - '*.wks' + - '*.wk2' + - '*.wk*' + mime: + - application/vnd.lotus-1-2-3 + name: Lotus 1-2-3 Format + reason: + - scientific format + source: + - various +macmolecule_file_format: + ext: + - '*.mcm' + mime: + - chemical/x-macmolecule + name: MacMolecule File Format + reason: + - scientific format + source: + - various +macromodel_molecular_mechanics: + ext: + - '*.mmod' + - '*.mmd' + mime: + - chemical/x-macromodel-input + name: MacroModel Molecular Mechanics + reason: + - scientific format + source: + - various +material_exchange_format_mxf_: + ext: + - '*.mxf' + mime: + - application/mxf + name: Material Exchange Format (MXF) + reason: + - long term format + source: + - ISO/TR 22299 +mathematica_format: + ext: + - '*.wl' + - '*.m' + - '*.ma' + - '*.nb' + mime: + - application/vnd.wolfram.mathematica + - application/mathematica + - application/vnd.wolfram.mathematica.package + - text/x-mathematica + name: Mathematica Format + reason: + - scientific format + source: + - various +mathml_math_content_format: + ext: + - '*.mml' + mime: + - text/mathml + - application/mathml+xml + name: MathML math content format + reason: + - scientific format + source: + - various +matlab_format: + ext: + - '*.m' + - '*.mat' + mime: + - application/matlab-mat + - text/x-matlab + - application/x-matlab-figure + - application/x-matlab-workspace + - application/x-matlab-data + name: Matlab Format + reason: + - scientific format + source: + - various +mdl_mol_molecular_models_and_drawings_format: + ext: + - '*.mol' + mime: + - chemical/x-mdl-molfile + name: MDL MOL molecular models and drawings format + reason: + - scientific format + source: + - various +mdl_reaction_data_file: + ext: + - '*.rd' + mime: + - chemical/x-mdl-rdfile + name: MDL Reaction-data file + reason: + - scientific format + source: + - various +mdl_reaction_format: + ext: + - '*.rxn' + mime: + - chemical/x-mdl-rxnfile + name: MDL Reaction format + reason: + - scientific format + source: + - various +mdl_structure_data_file: + ext: + - '*.sd' + mime: + - chemical/x-mdl-sdfile + name: MDL Structure-data file + reason: + - scientific format + source: + - various +mdl_transportable_graphics_file: + ext: + - '*.rd' + mime: + - chemical/x-mdl-tgf + name: MDL Transportable Graphics file + reason: + - scientific format + source: + - various +microsoft_excel_file: + ext: + - '*.xlc' + - '*.xld' + - '*.xlt' + - '*.xlsm' + - '*.xls' + - '*.xlsb' + - '*.xlw' + - '*.xll' + - '*.xlm' + - '*.xla' + mime: + - application/vnd.ms-excel.addin.macroenabled.12 + - application/vnd.ms-excel.template.macroenabled.12 + - application/vnd.ms-excel.sheet.binary.macroenabled.12 + - application/vnd.openxmlformats-officedocument.spreadsheetml.template + - application/vnd.ms-excel.sheet.4 + - application/msexcel + - application/vnd.ms-excel.workspace.3 + - application/vnd.openxmlformats-officedocument.spreadsheetml.sheet + - application/x-tika-old-excel + - application/vnd.ms-excel.sheet.3 + - application/vnd.ms-excel.sheet.2 + - application/vnd.ms-excel.workspace.4 + - application/vnd.ms-excel + - application/vnd.ms-excel.sheet.macroenabled.12 + name: Microsoft Excel File + reason: + - scientific format + source: + - various +miniseed_format: + ext: + - '*.mseed' + mime: + - application/vnd.fdsn.mseed + name: miniSEED Format + reason: + - scientific format + source: + - various +mmcif_3d_molecular_model_format: + ext: + - '*.mmcif' + mime: + - chemical/x-mmcif + name: MMCIF 3D molecular model format + reason: + - scientific format + source: + - various +molconn_z_format: + ext: + - '*.b' + mime: + - chemical/x-molconn-Z + name: Molconn-Z Format + reason: + - scientific format + source: + - various +motion_jpeg_2000_file_format: + ext: + - '*.jpf' + - '*.jpgm' + - '*.jpx' + - '*.mjp2' + - '*.mp1' + - '*.jp2' + - '*.mj2' + - '*.mp2' + - '*.jpm' + mime: + - video/jpm + - video/mj2 + - video/mpeg + name: Motion JPEG 2000 File Format + reason: + - long term format + - open format + source: + - ISO/TR 22299 + - various +mp3_file_format: + ext: + - '*.mp3' + mime: + - audio/x-mpegaudio + - audio/x-mpg + - audio/mp3 + - audio/mpeg + - audio/mpg + - audio/mpeg3 + - audio/x-mpeg3 + - audio/x-mp3 + name: MP3 File Format + reason: + - long term format + source: + - ISO/TR 22299 +mpeg_2_file_format: + ext: + - '*.m2v' + - '*.mpeg' + - '*.m2a' + - '*.ts' + - '*.mpg' + - '*.m2ts' + mime: + - video/mpeg + - video/mp2p + - video/x-mpeg2a + - video/mpeg2 + - video/mp2t + - application/x-pn-mpg + name: MPEG-2 File Format + reason: + - long term format + source: + - ISO/TR 22299 +mpeg_4_file_format: + ext: + - '*.m4a' + - '*.mpg' + - '*.m4v' + - '*.mp4' + mime: + - application/mp4 + - video/mp4v-es + - application/mpeg4-iod-xmt + - video/mpeg4-generic + - audio/mp4 + - application/mpeg4-iod + - video/mp4 + - application/mpeg4-generic + name: MPEG-4 File Format + reason: + - long term format + source: + - ISO/TR 22299 +mpeg_4_media_file: + ext: + - '*.f4v' + mime: + - application/mp4 + - video/mp4 + name: MPEG-4 Media File + reason: + - long term format + source: + - ISO/TR 22299 +mpeg_file_format: + ext: + - '*.mp3' + - '*.mpg' + - '*.mpeg' + - '*.mpa' + - '*.m1v' + - '*.m1a' + - '*.mpv' + mime: + - video/mpeg + - video/x-mpeg + - video/mpg + - video/x-mpg + - video/mpv + - video/mp1s + - audio/mpeg + - application/x-pn-mpg + name: MPEG File Format + reason: + - long term format + source: + - ISO/TR 22299 +ms_works_file: + ext: + - '*.wdb' + - '*.wps' + - '*.xlr' + - '*.wks' + - '*.wcm' + mime: + - application/vnd.ms-works + - application/x-tika-msworks-spreadsheet + name: MS Works File + reason: + - scientific format + source: + - various +msi_alchemy_format: + ext: + - '*.alc' + mime: + - hemical/x-alchemy + name: MSI Alchemy format + reason: + - scientific format + source: + - various +msi_cerius2_datafile: + ext: + - '*.c3d' + mime: + - chemical/x-cerius + name: MSI Cerius2 Datafile + reason: + - scientific format + source: + - various +multiple_image_network_graphics: + ext: + - '*.mng' + mime: + - video/x-mng + name: Multiple-Image Network Graphics + reason: + - open format + source: + - various +nasa_common_data_format_cdf_: + ext: + - '*.cdf' + mime: + - application/x-cdf + name: NASA common data format (.cdf) + reason: + - scientific format + source: + - various +netcdf: + ext: + - '*.nc' + - '*.cdf' + - '*.cf' + mime: + - application/x-netcdf + - 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video/x-ogg-rgb + - audio/x-ogg + name: Ogg Multimedia Container Format + reason: + - long term format + source: + - ISO/TR 22299 +ogg_packaged_dirac_video: + ext: + - '*.drc' + mime: + - video/x-dirac + name: Ogg Packaged Dirac Video + reason: + - long term format + source: + - ISO/TR 22299 +ogg_speex_codec_multimedia_file: + ext: + - '*.spx' + mime: + - application/x-speex + - audio/x-speex + - audio/speex + name: Ogg Speex Codec Multimedia File + reason: + - long term format + source: + - ISO/TR 22299 +opendocument_spreadsheet: + ext: + - '*.fods' + - '*.ots' + - '*.ods' + mime: + - application/vnd.oasis.opendocument.spreadsheet-template + - application/vnd.oasis.opendocument.spreadsheet + name: OpenDocument Spreadsheet + reason: + - scientific format + source: + - various +openexr_file_format: + ext: + - '*.exr' + mime: + - image/x-exr + name: OpenEXR File Format + reason: + - open format + source: + - various +openoffice_org_xml: + ext: + - '*.sxg' + - '*.sxc' + - '*.sxd' + - '*.stc' + - 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GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues.", - "id": 1219, - "mirId": "MIR:00000423", - "modified": "2019-06-11T14:17:17.038+0000", - "name": "Golm Metabolome Database Profile", - "namespaceEmbeddedInLui": false, - "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", - "prefix": "gmd.profile", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Golm Metabolome Database (Profile) at Max Planck Institute of Molecular Plant Physiology", - "id": 1220, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 806, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "name": "Max Planck Institute of Molecular Plant Physiology, Potsdam", - "rorId": null - }, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "mirId": "MIR:00100546", - "name": "Golm Metabolome Database (Profile) at Max Planck Institute of Molecular Plant Physiology", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://gmd.mpimp-golm.mpg.de/", - "sampleId": "10b38aaf-b977-4950-85b8-f4775f66658d", - "urlPattern": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId={$id}" - } - ], - "sampleId": "10b38aaf-b977-4950-85b8-f4775f66658d" - }, - { - "created": "2019-06-11T14:17:17.255+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra.", - "id": 1221, - "mirId": "MIR:00000424", - "modified": "2019-06-11T14:17:17.255+0000", - "name": "Golm Metabolome Database GC-MS spectra", - "namespaceEmbeddedInLui": false, - "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", - "prefix": "gmd.gcms", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Golm Metabolome Database (GC-MS Spectra) at Max Planck Institute of Molecular Plant Physiology", - "id": 1222, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 806, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "name": "Max Planck Institute of Molecular Plant Physiology, Potsdam", - "rorId": null - }, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "mirId": "MIR:00100547", - "name": "Golm Metabolome Database (GC-MS Spectra) at Max Planck Institute of Molecular Plant Physiology", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://gmd.mpimp-golm.mpg.de/", - "sampleId": "53d583d8-40c6-40e1-9296-23f821cd77a5", - "urlPattern": "http://gmd.mpimp-golm.mpg.de/Spectrums/{$id}" - } - ], - "sampleId": "53d583d8-40c6-40e1-9296-23f821cd77a5" - }, - { - "created": "2019-06-11T14:17:17.475+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances.", - "id": 1223, - "mirId": "MIR:00000425", - "modified": "2019-06-11T14:17:17.475+0000", - "name": "Golm Metabolome Database Reference Substance", - "namespaceEmbeddedInLui": false, - "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", - "prefix": "gmd.ref", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Golm Metabolome Database (Reference Substance) at Max Planck Institute of Molecular Plant Physiology", - "id": 1224, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 806, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "name": "Max Planck Institute of Molecular Plant Physiology, Potsdam", - "rorId": null - }, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "mirId": "MIR:00100548", - "name": "Golm Metabolome Database (Reference Substance) at Max Planck Institute of Molecular Plant Physiology", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://gmd.mpimp-golm.mpg.de/", - "sampleId": "8cf84adb-b4db-4807-ac98-0004247c35df", - "urlPattern": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/{$id}" - } - ], - "sampleId": "8cf84adb-b4db-4807-ac98-0004247c35df" - }, - { - "created": "2019-06-11T14:17:17.661+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes. This collection references analytes.", - "id": 1225, - "mirId": "MIR:00000426", - "modified": "2019-06-11T14:17:17.661+0000", - "name": "Golm Metabolome Database Analyte", - "namespaceEmbeddedInLui": false, - "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", - "prefix": "gmd.analyte", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Golm Metabolome Database (Analyte) at Max Planck Institute of Molecular Plant Physiology", - "id": 1226, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 806, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "name": "Max Planck Institute of Molecular Plant Physiology, Potsdam", - "rorId": null - }, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "mirId": "MIR:00100549", - "name": "Golm Metabolome Database (Analyte) at Max Planck Institute of Molecular Plant Physiology", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://gmd.mpimp-golm.mpg.de/", - "sampleId": "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80", - "urlPattern": "http://gmd.mpimp-golm.mpg.de/Analytes/{$id}" - } - ], - "sampleId": "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80" - }, - { - "created": "2019-06-11T14:17:17.850+0000", - "deprecated": false, - "deprecationDate": null, - "description": "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules.", - "id": 1227, - "mirId": "MIR:00000427", - "modified": "2019-06-11T14:17:17.850+0000", - "name": "IntAct Molecule", - "namespaceEmbeddedInLui": false, - "pattern": "^EBI\\-[0-9]+$", - "prefix": "intact.molecule", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "IntAct Molecule at EBI", - "id": 1228, - "institution": { - "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", - "homeUrl": "https://www.ebi.ac.uk", - "id": 2, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "name": "European Bioinformatics Institute", - "rorId": "https://ror.org/02catss52" - }, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "mirId": "MIR:00100550", - "name": "IntAct Molecule at EBI", - "official": false, - "providerCode": "ebi", - "resourceHomeUrl": "https://www.ebi.ac.uk/intact/", - "sampleId": "EBI-366083", - "urlPattern": "https://www.ebi.ac.uk/intact/molecule/{$id}" - } - ], - "sampleId": "EBI-366083" - }, - { - "created": "2019-06-11T14:17:18.034+0000", - "deprecated": false, - "deprecationDate": null, - "description": "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.", - "id": 1229, - "mirId": "MIR:00000428", - "modified": "2019-06-11T14:17:18.034+0000", - "name": "DEPOD", - "namespaceEmbeddedInLui": false, - "pattern": "^[A-Z0-9]+$", - "prefix": "depod", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "DEPOD at EMBL", - "id": 1231, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1230, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "name": "European Molecular Biology Laboratory EMBL, Heidelberg", - "rorId": null - }, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "mirId": "MIR:00100551", - "name": "DEPOD at EMBL", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://www.depod.bioss.uni-freiburg.de", - "sampleId": "PTPN1", - "urlPattern": "http://www.depod.bioss.uni-freiburg.de/showp.php?gene={$id}" - } - ], - "sampleId": "PTPN1" - }, - { - "created": "2019-06-11T14:17:18.324+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways.", - "id": 1232, - "mirId": "MIR:00000429", - "modified": "2019-06-11T14:17:18.324+0000", - "name": "Cell Signaling Technology Pathways", - "namespaceEmbeddedInLui": false, - "pattern": "^[A-Za-z0-9_-]+$", - "prefix": "cst", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "CST Pathways at Cell Signaling Technology", - "id": 1234, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1233, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Cell Signaling Technology, Inc., Danvers, Massachusetts", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100552", - "name": "CST Pathways at Cell Signaling Technology", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://www.cellsignal.com/pathways/index.html", - "sampleId": "Akt_PKB", - "urlPattern": "http://www.cellsignal.com/reference/pathway/{$id}.html" - } - ], - "sampleId": "Akt_PKB" - }, - { - "created": "2019-06-11T14:17:19.049+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.", - "id": 1241, - "mirId": "MIR:00000432", - "modified": "2019-06-11T14:17:19.049+0000", - "name": "Phytozome Locus", - "namespaceEmbeddedInLui": false, - "pattern": "^[A-Za-z0-9]+$", - "prefix": "phytozome.locus", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Phytozome Locus at Joint Genome Institute", - "id": 1243, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1242, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Joint Genome Institute, California, and the Center for Integrative Genomics, Lausanne", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100556", - "name": "Phytozome Locus at Joint Genome Institute", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://www.phytozome.net/", - "sampleId": "Glyma0021s00410", - "urlPattern": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:{$id}" - } - ], - "sampleId": "Glyma0021s00410" - }, - { - "created": "2019-06-11T14:17:19.310+0000", - "deprecated": false, - "deprecationDate": null, - "description": "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.", - "id": 1244, - "mirId": "MIR:00000433", - "modified": "2019-06-11T14:17:19.310+0000", - "name": "SubtiList", - "namespaceEmbeddedInLui": false, - "pattern": "^BG\\d+$", - "prefix": "subtilist", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "SubtiList at Pasteur Institute", - "id": 1246, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1245, - "location": { - "countryCode": "FR", - "countryName": "France" - }, - "name": "Pasteur Institute, Paris", - "rorId": null - }, - "location": { - "countryCode": "FR", - "countryName": "France" - }, - "mirId": "MIR:00100557", - "name": "SubtiList at Pasteur Institute", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://genolist.pasteur.fr/SubtiList/", - "sampleId": "BG11523", - "urlPattern": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+{$id}" - } - ], - "sampleId": "BG11523" - }, - { - "created": "2019-06-11T14:17:19.532+0000", - "deprecated": false, - "deprecationDate": null, - "description": "DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read.", - "id": 1247, - "mirId": "MIR:00000434", - "modified": "2019-06-11T14:17:19.532+0000", - "name": "DailyMed", - "namespaceEmbeddedInLui": false, - "pattern": "^[A-Za-z0-9-]+", - "prefix": "dailymed", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "DailyMed at NLM", - "id": 1249, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1248, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "U.S. National Library of Medicine, Bethesda, Maryland", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100558", - "name": "DailyMed at NLM", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "https://dailymed.nlm.nih.gov/dailymed/", - "sampleId": "973a9333-fec7-46dd-8eb5-25738f06ee54", - "urlPattern": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid={$id}" - } - ], - "sampleId": "973a9333-fec7-46dd-8eb5-25738f06ee54" - }, - { - "created": "2019-06-11T14:17:19.846+0000", - "deprecated": false, - "deprecationDate": null, - "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.", - "id": 1250, - "mirId": "MIR:00000435", - "modified": "2019-06-11T14:17:19.846+0000", - "name": "SIDER Drug", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d+$", - "prefix": "sider.drug", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "SIDER Drug v2 at EMBL (Heidelberg)", - "id": 1252, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1251, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "name": "Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg", - "rorId": null - }, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "mirId": "MIR:00100559", - "name": "SIDER Drug v2 at EMBL (Heidelberg)", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://sideeffects.embl.de/", - "sampleId": "2244", - "urlPattern": "http://sideeffects.embl.de/drugs/{$id}/" - } - ], - "sampleId": "2244" - }, - { - "created": "2019-06-11T14:17:20.079+0000", - "deprecated": false, - "deprecationDate": null, - "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.", - "id": 1253, - "mirId": "MIR:00000436", - "modified": "2019-06-11T14:17:20.079+0000", - "name": "SIDER Side Effect", - "namespaceEmbeddedInLui": false, - "pattern": "^C\\d+$", - "prefix": "sider.effect", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "SIDER Side Effect v2 at EMBL (Heidelberg)", - "id": 1254, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1251, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "name": "Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg", - "rorId": null - }, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "mirId": "MIR:00100560", - "name": "SIDER Side Effect v2 at EMBL (Heidelberg)", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://sideeffects.embl.de/", - "sampleId": "C0017565", - "urlPattern": "http://sideeffects.embl.de/se/{$id}/" - } - ], - "sampleId": "C0017565" - }, - { - "created": "2019-06-11T14:17:20.303+0000", - "deprecated": false, - "deprecationDate": null, - "description": "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. 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It stands near to the Yuanmingyuan Garden and the Summer Palace.\nPeking University is proud of its outstanding faculty, including 48 members of the Chinese Academy of Sciences (CAS), 9 members of the Chinese Academy of Engineering (CAE), and 21 members of the Third World Academy of Sciences (TWAS).", - "homeUrl": "http://english.pku.edu.cn/", - "id": 1612, - "location": { - "countryCode": "CN", - "countryName": "China" - }, - "name": "Peking University", - "rorId": null - }, - "location": { - "countryCode": "CN", - "countryName": "China" - }, - "mirId": "MIR:00100591", - "name": "DATF through PlantTFDB", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://datf.cbi.pku.edu.cn/", - "sampleId": "AT1G01030.1", - "urlPattern": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did={$id}" - } - ], - "sampleId": "AT1G01030.1" - }, - { - "created": "2019-06-11T14:17:24.936+0000", - "deprecated": false, - "deprecationDate": null, - "description": "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands.", - "id": 1310, - "mirId": "MIR:00000457", - "modified": "2019-06-11T14:17:24.936+0000", - "name": "IUPHAR ligand", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d+$", - "prefix": "iuphar.ligand", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "IUPHAR ligand at University of Edinburgh", - "id": 1311, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 827, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "name": "Centre for Cardiovascular Science, University of Edinburgh, Edinburgh", - "rorId": null - }, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "mirId": "MIR:00100592", - "name": "IUPHAR ligand at University of Edinburgh", - "official": true, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all", - "sampleId": "1755", - "urlPattern": "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId={$id}" - } - ], - "sampleId": "1755" - }, - { - "created": "2019-06-11T14:17:25.144+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier.", - "id": 1312, - "mirId": "MIR:00000458", - "modified": "2019-06-11T14:17:25.144+0000", - "name": "Molbase", - "namespaceEmbeddedInLui": false, - "pattern": "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$", - "prefix": "molbase", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Molbase at Chinese Academy of Sciences", - "id": 1314, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1313, - "location": { - "countryCode": "CN", - "countryName": "China" - }, - "name": "Chinese Academy of Sciences, Xuhui District Shanghai", - "rorId": null - }, - "location": { - "countryCode": "CN", - "countryName": "China" - }, - "mirId": "MIR:00100593", - "name": "Molbase at Chinese Academy of Sciences", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://www.molbase.com/", - "sampleId": "128796-39-4", - "urlPattern": "http://www.molbase.com/en/index.php?app=search&search_keyword={$id}" - } - ], - "sampleId": "128796-39-4" - }, - { - "created": "2019-06-11T14:17:25.397+0000", - "deprecated": false, - "deprecationDate": null, - "description": "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions.", - "id": 1315, - "mirId": "MIR:00000459", - "modified": "2019-06-11T14:17:25.397+0000", - "name": "YRC PDR", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d+$", - "prefix": "yrcpdr", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "YRC PDR at University of Washington", - "id": 1317, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1316, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Department of Biochemistry, University of Washington, Seattle", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100594", - "name": "YRC PDR at University of Washington", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://www.yeastrc.org/pdr/", - "sampleId": "2673500", - "urlPattern": "http://yeastrc.org/pdr/viewProtein.do?id={$id}" - } - ], - "sampleId": "2673500" - }, - { - "created": "2019-06-11T14:17:25.610+0000", - "deprecated": false, - "deprecationDate": null, - "description": "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521].", - "id": 1318, - "mirId": "MIR:00000460", - "modified": "2019-06-11T14:17:25.610+0000", - "name": "Yeast Intron Database v3", - "namespaceEmbeddedInLui": false, - "pattern": "^[A-Z0-9]+$", - "prefix": "yid", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Yeast Intron Database version 3 at Baskin School of Engineering", - "id": 1320, - "institution": { - "description": "UC Santa Cruz opened in 1965 with 650 students. During the 2018-2019 academic year, 16,983 undergraduate and 1,822 graduate students were enrolled.\n", - "homeUrl": "https://www.ucsc.edu", - "id": 1319, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "University of California, Santa Cruz", - "rorId": "https://ror.org/03s65by71" - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100595", - "name": "Yeast Intron Database version 3 at Baskin School of Engineering", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://compbio.soe.ucsc.edu/yeast_introns.html", - "sampleId": "SNR17A", - "urlPattern": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName={$id}" - } - ], - "sampleId": "SNR17A" - }, - { - "created": "2019-06-11T14:17:25.854+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.", - "id": 1321, - "mirId": "MIR:00000461", - "modified": "2019-06-11T14:17:25.854+0000", - "name": "FuncBase Fly", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d+$", - "prefix": "funcbase.fly", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "FuncBase Fly at Harvard Medical School", - "id": 1323, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1322, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Harvard Medical School, Boston, Massachusetts", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100596", - "name": "FuncBase Fly at Harvard Medical School", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://func.mshri.on.ca/fly", - "sampleId": "10194", - "urlPattern": "http://func.mshri.on.ca/fly/genes/list_functional_scores/{$id}" - } - ], - "sampleId": "10194" - }, - { - "created": "2019-06-11T14:17:26.074+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data.", - "id": 1324, - "mirId": "MIR:00000462", - "modified": "2019-06-11T14:17:26.074+0000", - "name": "FuncBase Human", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d+$", - "prefix": "funcbase.human", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "FuncBase Human at Harvard Medical School", - "id": 1325, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1322, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Harvard Medical School, Boston, Massachusetts", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100597", - "name": "FuncBase Human at Harvard Medical School", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://func.mshri.on.ca/human/", - "sampleId": "119514", - "urlPattern": "http://func.mshri.on.ca/human/genes/list_functional_scores/{$id}" - } - ], - "sampleId": "119514" - }, - { - "created": "2019-06-11T14:17:26.285+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse.", - "id": 1326, - "mirId": "MIR:00000463", - "modified": "2019-06-11T14:17:26.285+0000", - "name": "FuncBase Mouse", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d+$", - "prefix": "funcbase.mouse", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "FuncBase Mouse at Harvard Medical School", - "id": 1327, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1322, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Harvard Medical School, Boston, Massachusetts", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100598", - "name": "FuncBase Mouse at Harvard Medical School", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://func.mshri.on.ca/mouse/", - "sampleId": "1351341", - "urlPattern": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/{$id}" - } - ], - "sampleId": "1351341" - }, - { - "created": "2019-06-11T14:18:18.874+0000", - "deprecated": false, - "deprecationDate": null, - "description": "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.", - "id": 1881, - "mirId": "MIR:00000679", - "modified": "2019-06-11T14:18:18.874+0000", - "name": "The cBioPortal for Cancer Genomics", - "namespaceEmbeddedInLui": false, - "pattern": "^[a-z0-9\\_]+$", - "prefix": "cbioportal", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "The cBioPortal for Cancer Genomics", - "id": 1883, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1882, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Memorial Sloan Kettering Cancer Center", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100909", - "name": "The cBioPortal for Cancer Genomics", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://www.cbioportal.org", - "sampleId": "laml_tcga_pub", - "urlPattern": "http://www.cbioportal.org/study?id={$id}#summary" - } - ], - "sampleId": "laml_tcga_pub" - }, - { - "created": "2019-06-11T14:17:26.470+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast.", - "id": 1328, - "mirId": "MIR:00000464", - "modified": "2019-06-11T14:17:26.470+0000", - "name": "FuncBase Yeast", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d+$", - "prefix": "funcbase.yeast", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "FuncBase Yeast at Harvard Medical School", - "id": 1329, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1322, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Harvard Medical School, Boston, Massachusetts", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100599", - "name": "FuncBase Yeast at Harvard Medical School", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://func.mshri.on.ca/yeast", - "sampleId": "2701", - "urlPattern": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/{$id}" - } - ], - "sampleId": "2701" - }, - { - "created": "2019-06-11T14:17:26.654+0000", - "deprecated": false, - "deprecationDate": null, - "description": "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.", - "id": 1330, - "mirId": "MIR:00000465", - "modified": "2019-06-11T14:17:26.654+0000", - "name": "YDPM", - "namespaceEmbeddedInLui": false, - "pattern": "^Y[A-Z]{2}\\d+[CW]$", - "prefix": "ydpm", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "YDPM at Stanford University School of Medicine", - "id": 1332, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1331, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Stanford University School of Medicine, Stanford, California", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100600", - "name": "YDPM at Stanford University School of Medicine", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://www-deletion.stanford.edu/YDPM/", - "sampleId": "YAL001C", - "urlPattern": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist={$id}" - } - ], - "sampleId": "YAL001C" - }, - { - "created": "2019-06-11T14:17:26.886+0000", - "deprecated": false, - "deprecationDate": null, - "description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes.", - "id": 1333, - "mirId": "MIR:00000466", - "modified": "2019-06-11T14:17:26.886+0000", - "name": "WormBase RNAi", - "namespaceEmbeddedInLui": false, - "pattern": "^WBRNAi\\d{8}$", - "prefix": "wb.rnai", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "WormBase RNAi", - "id": 1334, - "institution": { - "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", - "homeUrl": "https://www.ebi.ac.uk", - "id": 2, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "name": "European Bioinformatics Institute", - "rorId": "https://ror.org/02catss52" - }, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "mirId": "MIR:00100601", - "name": "WormBase RNAi", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "https://www.wormbase.org/", - "sampleId": "WBRNAi00086878", - "urlPattern": "https://www.wormbase.org/species/c_elegans/rnai/{$id}" - } - ], - "sampleId": "WBRNAi00086878" - }, - { - "created": "2019-06-11T14:17:27.086+0000", - "deprecated": false, - "deprecationDate": null, - "description": "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity.", - "id": 1335, - "mirId": "MIR:00000468", - "modified": "2019-06-11T14:17:27.086+0000", - "name": "PASS2", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d+$", - "prefix": "pass2", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "PASS2 at National centre for Biological Sciences (India)", - "id": 1337, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1336, - "location": { - "countryCode": "IN", - "countryName": "India" - }, - "name": "National centre for Biological Sciences, TIFR, GKVK campus, Bangalore, Karnataka", - "rorId": null - }, - "location": { - "countryCode": "IN", - "countryName": "India" - }, - "mirId": "MIR:00100603", - "name": "PASS2 at National centre for Biological Sciences (India)", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://caps.ncbs.res.in/pass2/", - "sampleId": "46977", - "urlPattern": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id={$id}" - } - ], - "sampleId": "46977" - }, - { - "created": "2019-06-11T14:17:27.338+0000", - "deprecated": false, - "deprecationDate": null, - "description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.", - "id": 1338, - "mirId": "MIR:00000469", - "modified": "2019-06-11T14:17:27.338+0000", - "name": "ICEberg element", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d+$", - "prefix": "iceberg.element", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "ICEberg element at Shanghai Jiaotong University", - "id": 1340, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1339, - "location": { - "countryCode": "CN", - "countryName": "China" - }, - "name": "State Key Laboratory of Microbial Metabolism and School of Life Sciences &amp;amp;amp; Biotechnology, Shanghai Jiaotong University, Shanghai", - "rorId": null - }, - "location": { - "countryCode": "CN", - "countryName": "China" - }, - "mirId": "MIR:00100604", - "name": "ICEberg element at Shanghai Jiaotong University", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://db-mml.sjtu.edu.cn/ICEberg/", - "sampleId": "100", - "urlPattern": "http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id={$id}" - } - ], - "sampleId": "100" - }, - { - "created": "2019-06-11T14:17:27.601+0000", - "deprecated": false, - "deprecationDate": null, - "description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. 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It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.", - "id": 1456, - "mirId": "MIR:00000516", - "modified": "2019-06-11T14:17:38.379+0000", - "name": "Antibody Registry", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d{6}$", - "prefix": "antibodyregistry", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Antibody Registry at University of California", - "id": 1458, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1457, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Neuroscience Information Framework, University of California, San Diego, California", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100664", - "name": "Antibody Registry at University of California", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://antibodyregistry.org/", - "sampleId": "493771", - "urlPattern": "http://antibodyregistry.org/AB_{$id}" - } - ], - "sampleId": "493771" - }, - { - "created": "2019-06-11T14:17:38.625+0000", - "deprecated": false, - "deprecationDate": null, - "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.", - "id": 1459, - "mirId": "MIR:00000517", - "modified": "2019-06-11T14:17:38.625+0000", - "name": "Mathematical Modelling Ontology", - "namespaceEmbeddedInLui": false, - "pattern": "^MAMO_\\d{7}$", - "prefix": "mamo", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "MAMO through BioPortal", - "id": 1460, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 5, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "National Center for Biomedical Ontology, Stanford", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100665", - "name": "MAMO through BioPortal", - "official": false, - "providerCode": "bptl", - "resourceHomeUrl": "http://bioportal.bioontology.org/ontologies/MAMO", - "sampleId": "MAMO_0000026", - "urlPattern": "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/{$id}" - }, - { - "deprecated": false, - "deprecationDate": null, - "description": "MaMO through OLS", - "id": 1461, - "institution": { - "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", - "homeUrl": "https://www.ebi.ac.uk", - "id": 2, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "name": "European Bioinformatics Institute", - "rorId": "https://ror.org/02catss52" - }, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "mirId": "MIR:00100758", - "name": "MaMO through OLS", - "official": false, - "providerCode": "ols", - "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/mamo", - "sampleId": "MAMO_0000026", - "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/mamo/terms?short_form={$id}" - } - ], - "sampleId": "MAMO_0000026" - }, - { - "created": "2019-06-11T14:17:38.985+0000", - "deprecated": false, - "deprecationDate": null, - "description": "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.", - "id": 1462, - "mirId": "MIR:00000518", - "modified": "2019-06-11T14:17:38.985+0000", - "name": "Plant Environment Ontology", - "namespaceEmbeddedInLui": true, - "pattern": "^(P)?EO\\:\\d{7}$", - "prefix": "eo", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Plant Environment Ontology through Gramene", - "id": 1463, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 556, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Cold Spring Harbor Laboratory, New York", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100667", - "name": "Plant Environment Ontology through Gramene", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://archive.gramene.org/db/ontology/search_term?id=EO:0007359", - "sampleId": "0007404", - "urlPattern": "http://archive.gramene.org/db/ontology/search?query=EO:{$id}" - }, - { - "deprecated": false, - "deprecationDate": null, - "description": "Plant Environment Ontology through BioPortal", - "id": 1464, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 5, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "National Center for Biomedical Ontology, Stanford", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100668", - "name": "Plant Environment Ontology through BioPortal", - "official": false, - "providerCode": "bptl", - "resourceHomeUrl": "http://bioportal.bioontology.org/ontologies/PECO", - "sampleId": "0007404", - "urlPattern": "http://purl.bioontology.org/ontology/PECO/EO:{$id}" - }, - { - "deprecated": false, - "deprecationDate": null, - "description": "Plant Environment Ontology through OLS", - "id": 1465, - "institution": { - "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", - "homeUrl": "https://www.ebi.ac.uk", - "id": 2, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "name": "European Bioinformatics Institute", - "rorId": "https://ror.org/02catss52" - }, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "mirId": "MIR:00100669", - "name": "Plant Environment Ontology through OLS", - "official": false, - "providerCode": "ols", - "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/eo", - "sampleId": "0007404", - "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/eo/terms?obo_id=EO:{$id}" - } - ], - "sampleId": "0007404" - }, - { - "created": "2019-06-11T14:17:39.487+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.", - "id": 1466, - "mirId": "MIR:00000519", - "modified": "2019-06-11T14:17:39.487+0000", - "name": "Identifiers.org Terms", - "namespaceEmbeddedInLui": false, - "pattern": "^[A-Za-z]+$", - "prefix": "idot", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "IdoT via biomodels.net", - "id": 1467, - "institution": { - "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", - "homeUrl": "https://www.ebi.ac.uk", - "id": 2, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "name": "European Bioinformatics Institute", - "rorId": "https://ror.org/02catss52" - }, - "location": { - "countryCode": "GB", - "countryName": "United Kingdom" - }, - "mirId": "MIR:00100670", - "name": "IdoT via biomodels.net", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "https://identifiers.org/", - "sampleId": "identifierPattern", - "urlPattern": "https://biomodels.net/vocab/idot.rdf#{$id}" - } - ], - "sampleId": "identifierPattern" - }, - { - "created": "2019-06-11T14:17:39.906+0000", - "deprecated": false, - "deprecationDate": null, - "description": "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. 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Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes.", - "id": 1472, - "mirId": "MIR:00000522", - "modified": "2019-06-11T14:17:40.104+0000", - "name": "Antibiotic Resistance Genes Database", - "namespaceEmbeddedInLui": false, - "pattern": "^[A-Z_]{3}[0-9]{4,}$", - "prefix": "ardb", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "ARDB at University of Maryland", - "id": 1474, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1473, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "name": "Center for Bioinformatics and Computational Biology, University of Maryland, Maryland", - "rorId": null - }, - "location": { - "countryCode": "US", - "countryName": "United States" - }, - "mirId": "MIR:00100678", - "name": "ARDB at University of Maryland", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "http://ardb.cbcb.umd.edu/", - "sampleId": "CAE46076", - "urlPattern": "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term={$id}" - } - ], - "sampleId": "CAE46076" - }, - { - "created": "2019-06-11T14:17:40.344+0000", - "deprecated": false, - "deprecationDate": null, - "description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. 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This collection provides access to individual proteins.", - "id": 1475, - "mirId": "MIR:00000524", - "modified": "2019-06-11T14:17:40.344+0000", - "name": "ProteomicsDB Protein", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d+$", - "prefix": "proteomicsdb.protein", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Proteomics DB Protein at Center for Integrated Protein Science", - "id": 1477, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1476, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "name": "Center for Integrated Protein Science, Munich,", - "rorId": null - }, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "mirId": "MIR:00100680", - "name": "Proteomics DB Protein at Center for Integrated Protein Science", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "https://www.proteomicsdb.org/#human", - "sampleId": "53504", - "urlPattern": "https://www.proteomicsdb.org/#human/proteinDetails/{$id}/summary" - } - ], - "sampleId": "53504" - }, - { - "created": "2019-06-11T14:17:40.583+0000", - "deprecated": false, - "deprecationDate": null, - "description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein.", - "id": 1478, - "mirId": "MIR:00000525", - "modified": "2019-06-11T14:17:40.583+0000", - "name": "ProteomicsDB Peptide", - "namespaceEmbeddedInLui": false, - "pattern": "^\\d+$", - "prefix": "proteomicsdb.peptide", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Proteomics DB Peptide at Center for Integrated Protein Science", - "id": 1480, - "institution": { - "description": "CURATOR_REVIEW", - "homeUrl": "CURATOR_REVIEW", - "id": 1479, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "name": "Center for Integrated Protein Science, Munich", - "rorId": null - }, - "location": { - "countryCode": "DE", - "countryName": "Germany" - }, - "mirId": "MIR:00100681", - "name": "Proteomics DB Peptide at Center for Integrated Protein Science", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "https://www.proteomicsdb.org/#peptideSearch", - "sampleId": "53504", - "urlPattern": "https://www.proteomicsdb.org/#human/proteinDetails/{$id}/peptides/" - } - ], - "sampleId": "53504" - }, - { - "created": "2019-06-11T14:17:40.825+0000", - "deprecated": false, - "deprecationDate": null, - "description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. 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Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs.", - "id": 1666, - "mirId": "MIR:00000600", - "modified": "2020-11-25T15:01:33.103+0000", - "name": "Progenetix", - "namespaceEmbeddedInLui": false, - "pattern": "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$", - "prefix": "pgx", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Progenetix", - "id": 1668, - "institution": { - "description": "No description available", - "homeUrl": "https://www.uzh.ch/en.html", - "id": 1667, - "location": { - "countryCode": "CH", - "countryName": "Switzerland" - }, - "name": "University of Zurich", - "rorId": "https://ror.org/02crff812" - }, - "location": { - "countryCode": "CH", - "countryName": "Switzerland" - }, - "mirId": "MIR:00100801", - "name": "Progenetix", - "official": false, - "providerCode": "CURATOR_REVIEW", - "resourceHomeUrl": "https://progenetix.org/", - "sampleId": "pgxbs-kftva5zv", - "urlPattern": "https://progenetix.org/services/ids/{$id}" - } - ], - "sampleId": "pgxbs-kftva5zv" - }, - { - "created": "2020-12-14T12:49:56.333+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease.", - "id": 2477, - "mirId": "MIR:00000789", - "modified": "2020-12-14T12:49:56.333+0000", - "name": "SARS-CoV-2", - "namespaceEmbeddedInLui": false, - "pattern": "^\\w+_COVID19_[-\\w]+$", - "prefix": "covid19", - "resources": [ - { - "deprecated": false, - "deprecationDate": null, - "description": "Elixir@UiT is the local branch of ELIXIR-NO node based at UiT.", - "id": 2478, - "institution": { - "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/00wge5k78' with Wikidata IDs [Q279724], and ISNI IDs [0000000122595234]", - "homeUrl": "https://uit.no/startsida", - "id": 2476, - "location": { - "countryCode": "NO", - "countryName": "Norway" - }, - "name": "University of Troms\u00f8 - The Arctic University of Norway", - "rorId": null - }, - "location": { - "countryCode": "NO", - "countryName": "Norway" - }, - "mirId": "MIR:00000787", - "name": "Elixir@UiT", - "official": true, - "providerCode": "sfb", - "resourceHomeUrl": "https://covid19.sfb.uit.no", - "sampleId": "SFB_COVID19_MW286762", - "urlPattern": "https://covid19.sfb.uit.no/api/records/{$id}" - } - ], - "sampleId": "SFB_COVID19_MW286762" - }, - { - "created": "2020-12-14T12:57:54.560+0000", - "deprecated": false, - "deprecationDate": null, - "description": "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. 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Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy. + id: 233 + mirId: MIR:00000067 + modified: 2019-06-11T14:15:50.895+0000 + name: FMA + namespaceEmbeddedInLui: true + pattern: ^FMA:\d+$ + prefix: fma + resources: + - deprecated: false + deprecationDate: + description: Foundational Model of Anatomy via Ontology Lookup Service (OLS) + id: 234 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100097 + name: Foundational Model of Anatomy via Ontology Lookup Service (OLS) + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/fma/ + sampleId: '67112' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/fma/terms?obo_id=FMA:{$id} + - deprecated: false + deprecationDate: + description: Foundational Model of Anatomy through BioPortal + id: 235 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100236 + name: Foundational Model of Anatomy through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/FMA + sampleId: '67112' + urlPattern: http://purl.bioontology.org/ontology/FMA_subset/FMA:{$id} + sampleId: '67112' + - created: 2019-06-11T14:15:51.252+0000 + deprecated: false + deprecationDate: + description: MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. 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Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers. + homeUrl: https://bio2rdf.org + id: 33 + location: + countryCode: US + countryName: United States + name: Bio2RDF.org + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100693 + name: Bio2RDF + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ncbigene.bio2rdf.org/fct + sampleId: '100010' + urlPattern: http://ncbigene.bio2rdf.org/describe/?url=http://bio2rdf.org/ncbigene:{$id} + sampleId: '100010' + - created: 2019-06-11T14:15:51.781+0000 + deprecated: false + deprecationDate: + description: KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources. + id: 242 + mirId: MIR:00000070 + modified: 2019-06-11T14:15:51.781+0000 + name: KEGG Genes + namespaceEmbeddedInLui: false + pattern: ^\w+:[\w\d\.-]*$ + prefix: kegg.genes + resources: + - deprecated: false + deprecationDate: + description: KEGG GENES Database + id: 243 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 15 + location: + countryCode: JP + countryName: Japan + name: Kyoto University Bioinformatics Center + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100100 + name: KEGG GENES Database + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.genome.jp/kegg/genes.html + sampleId: syn:ssr3451 + urlPattern: http://www.kegg.jp/entry/{$id} + sampleId: syn:ssr3451 + - created: 2019-06-11T14:15:51.985+0000 + deprecated: false + deprecationDate: + description: BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data. + id: 244 + mirId: MIR:00000071 + modified: 2019-06-11T14:15:51.985+0000 + name: BRENDA + namespaceEmbeddedInLui: false + pattern: ^((\d+\.-\.-\.-)|(\d+\.\d+\.-\.-)|(\d+\.\d+\.\d+\.-)|(\d+\.\d+\.\d+\.\d+))$ + prefix: brenda + resources: + - deprecated: false + deprecationDate: + description: Brenda enzyme database + id: 246 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 245 + location: + countryCode: DE + countryName: Germany + name: Technical University Braunschweig, Institute for Bioinformatics and Biochemistry + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100101 + name: Brenda enzyme database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.brenda-enzymes.org/ + sampleId: 1.1.1.1 + urlPattern: https://www.brenda-enzymes.org/php/result_flat.php4?ecno={$id} + sampleId: 1.1.1.1 + - created: 2019-06-11T14:15:52.227+0000 + deprecated: false + deprecationDate: + description: PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results. + id: 247 + mirId: MIR:00000072 + modified: 2019-06-11T14:15:52.227+0000 + name: PubChem-bioassay + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: pubchem.bioassay + resources: + - deprecated: false + deprecationDate: + description: PubChem Bioassay at NCBI + id: 248 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100102 + name: PubChem Bioassay at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay + sampleId: '1018' + urlPattern: https://pubchem.ncbi.nlm.nih.gov/bioassay/{$id} + sampleId: '1018' + - created: 2019-06-11T14:17:58.671+0000 + deprecated: false + deprecationDate: + description: The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. + id: 1659 + mirId: MIR:00000597 + modified: 2019-06-11T14:17:58.671+0000 + name: BioAssay Ontology + namespaceEmbeddedInLui: false + pattern: ^\d{7}$ + prefix: bao + resources: + - deprecated: false + deprecationDate: + description: BioAssay Ontology through BioPortal + id: 1660 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100797 + name: BioAssay Ontology through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/BAO/ + sampleId: '0002989' + urlPattern: http://bioportal.bioontology.org/ontologies/BAO/bao:BAO_{$id} + - deprecated: false + deprecationDate: + description: BioAssay Ontology through OLS + id: 1661 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100798 + name: BioAssay Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://bioportal.bioontology.org/ontologies/BAO/ + sampleId: '0002989' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/bao/terms?obo_id=BAO:{$id} + sampleId: '0002989' + - created: 2019-06-11T14:15:52.436+0000 + deprecated: false + deprecationDate: + description: Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language. + id: 249 + mirId: MIR:00000073 + modified: 2019-06-11T14:15:52.436+0000 + name: Pathway Commons + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: pathwaycommons + resources: + - deprecated: false + deprecationDate: + description: Pathway Commons + id: 251 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 250 + location: + countryCode: US + countryName: United States + name: Memorial Sloan-Kettering Cancer Center + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100103 + name: Pathway Commons + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.pathwaycommons.org/pc/ + sampleId: '485991' + urlPattern: http://www.pathwaycommons.org/pc/record2.do?id={$id} + sampleId: '485991' + - created: 2019-06-11T14:15:52.667+0000 + deprecated: false + deprecationDate: + description: HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees. + id: 252 + mirId: MIR:00000074 + modified: 2019-06-11T14:15:52.667+0000 + name: HOVERGEN + namespaceEmbeddedInLui: false + pattern: ^HBG\d+$ + prefix: hovergen + resources: + - deprecated: false + deprecationDate: + description: Hovergen + id: 254 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 253 + location: + countryCode: FR + countryName: France + name: Laboratoire de BiomĆ©trie, GĆ©nĆ©tique et Biologie des Populations + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100104 + name: Hovergen + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://pbil.univ-lyon1.fr/databases/hovergen.php + sampleId: HBG004341 + urlPattern: http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query={$id}&db=HOVERGEN + sampleId: HBG004341 + - created: 2019-06-11T14:15:52.916+0000 + deprecated: false + deprecationDate: + description: A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma. + id: 255 + mirId: MIR:00000075 + modified: 2019-06-11T14:15:52.916+0000 + name: Melanoma Molecular Map Project Biomaps + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: mmmp:biomaps + resources: + - deprecated: false + deprecationDate: + description: main webpage + id: 257 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 256 + location: + countryCode: FR + countryName: France + name: Melanoma Molecular Map Project + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100105 + name: main webpage + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp + sampleId: '37' + urlPattern: http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id={$id} + sampleId: '37' + - created: 2019-06-11T14:15:53.125+0000 + deprecated: false + deprecationDate: + description: "WikiPathways is a resource providing an open and public collection of pathway maps created and curated by the community in a Wiki like style.\r\nAll content is under the Creative Commons Attribution 3.0 Unported license." + id: 258 + mirId: MIR:00000076 + modified: 2019-06-11T14:15:53.125+0000 + name: WikiPathways + namespaceEmbeddedInLui: false + pattern: WP\d{1,5}(\_r\d+)?$ + prefix: wikipathways + resources: + - deprecated: false + deprecationDate: + description: WikiPathways + id: 260 + institution: + description: >- + Maastricht University (UM) is the most international university in + the Netherlands and, with 18,000 students and 4,400 employees, is + still growing. The university stands out for its innovative + education model, international character and multidisciplinary + approach to research and education. + + Thanks to its high-quality research and study programmes as well as a strong focus on social engagement, UM has quickly built up a solid reputation. Today it is considered one of the best young universities in the world. + homeUrl: https://www.maastrichtuniversity.nl + id: 283 + location: + countryCode: NL + countryName: Netherlands + name: Maastricht University + rorId: https://ror.org/02jz4aj89 + location: + countryCode: US + countryName: United States + mirId: MIR:00100106 + name: WikiPathways + official: true + providerCode: um + resourceHomeUrl: http://www.wikipathways.org/ + sampleId: WP100 + urlPattern: http://www.wikipathways.org/instance/{$id} + - deprecated: false + deprecationDate: + description: > + Scholia is a service that creates visual scholarly profiles for + topic, people, organizations, species, chemicals, etc using + bibliographic and other information in Wikidata. + id: 2316 + institution: + description: >- + Maastricht University (UM) is the most international university in + the Netherlands and, with 18,000 students and 4,400 employees, is + still growing. The university stands out for its innovative + education model, international character and multidisciplinary + approach to research and education. + + Thanks to its high-quality research and study programmes as well as a strong focus on social engagement, UM has quickly built up a solid reputation. Today it is considered one of the best young universities in the world. + homeUrl: https://www.maastrichtuniversity.nl + id: 283 + location: + countryCode: NL + countryName: Netherlands + name: Maastricht University + rorId: https://ror.org/02jz4aj89 + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00000696 + name: Scholia + official: false + providerCode: scholia + resourceHomeUrl: https://scholia.toolforge.org/ + sampleId: WP111 + urlPattern: https://scholia.toolforge.org/wikipathways/{$id} + sampleId: WP100 + - created: 2019-06-11T14:15:53.388+0000 + deprecated: false + deprecationDate: + description: MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved. + id: 261 + mirId: MIR:00000077 + modified: 2019-06-11T14:15:53.388+0000 + name: MACiE + namespaceEmbeddedInLui: false + pattern: ^M\d{4}$ + prefix: macie + resources: + - deprecated: false + deprecationDate: + description: MACiE database of mechanisms, annotation and classification in enzymes + id: 262 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100108 + name: MACiE database of mechanisms, annotation and classification in enzymes + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html + sampleId: M0001 + urlPattern: https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id={$id} + sampleId: M0001 + - created: 2019-06-11T14:15:53.607+0000 + deprecated: false + deprecationDate: + description: The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). + id: 263 + mirId: MIR:00000078 + modified: 2019-06-11T14:15:53.607+0000 + name: miRBase Sequence + namespaceEmbeddedInLui: false + pattern: MI\d{7} + prefix: mirbase + resources: + - deprecated: false + deprecationDate: + description: miRBase Sequence Database + id: 265 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 264 + location: + countryCode: GB + countryName: United Kingdom + name: Faculty of Life Sciences, University of Manchester + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100135 + name: miRBase Sequence Database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.mirbase.org/ + sampleId: MI0000001 + urlPattern: http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc={$id} + sampleId: MI0000001 + - created: 2019-06-11T14:15:53.859+0000 + deprecated: false + deprecationDate: + description: ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN. + id: 266 + mirId: MIR:00000079 + modified: 2019-06-11T14:15:53.859+0000 + name: ZFIN Bioentity + namespaceEmbeddedInLui: false + pattern: ^ZDB\-\w+\-\d+\-\d+$ + prefix: zfin + resources: + - deprecated: false + deprecationDate: + description: ZFIN at University of Oregon + id: 268 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 267 + location: + countryCode: US + countryName: United States + name: Zebrafish Information Network, University of Oregon + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100110 + name: ZFIN at University of Oregon + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://zfin.org + sampleId: ZDB-GENE-041118-11 + urlPattern: http://zfin.org/{$id} + - deprecated: false + deprecationDate: + description: ZFIN through BioEntity Link + id: 269 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 101 + location: + countryCode: US + countryName: United States + name: InSilico Inc, in Eugene, Oregon + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100891 + name: ZFIN through BioEntity Link + official: false + providerCode: bioentitylink + resourceHomeUrl: https://bioentity.link/ + sampleId: ZDB-GENE-041118-11 + urlPattern: https://bioentity.link/#/lexicon/public/{$id} + - deprecated: false + deprecationDate: + description: ZFIN through the Alliance of Genome Resources + id: 270 + institution: + description: The primary mission of the Alliance of Genome Resources (the Alliance) is to develop and maintain sustainable genome information resources that facilitate the use of diverse model organisms in understanding the genetic and genomic basis of human biology, health and disease. + homeUrl: https://www.alliancegenome.org + id: 103 + location: + countryCode: US + countryName: United States + name: Alliance of Genome Resources + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100902 + name: ZFIN through the Alliance of Genome Resources + official: false + providerCode: agr + resourceHomeUrl: https://www.alliancegenome.org + sampleId: ZDB-GENE-041118-11 + urlPattern: https://test.alliancegenome.org/gene/ZFIN:{$id} + sampleId: ZDB-GENE-041118-11 + - created: 2019-06-11T14:15:54.375+0000 + deprecated: false + deprecationDate: + description: The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database. + id: 271 + mirId: MIR:00000080 + modified: 2019-06-11T14:15:54.375+0000 + name: HGNC + namespaceEmbeddedInLui: false + pattern: ^((HGNC|hgnc):)?\d{1,5}$ + prefix: hgnc + resources: + - deprecated: false + deprecationDate: + description: HUGO Genome Nomenclature Committee + id: 272 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100111 + name: HUGO Genome Nomenclature Committee + official: true + providerCode: ebi + resourceHomeUrl: https://www.genenames.org + sampleId: '2674' + urlPattern: https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/{$id} + sampleId: '2674' + - created: 2019-06-11T14:15:54.604+0000 + deprecated: false + deprecationDate: + description: The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data. + id: 273 + mirId: MIR:00000081 + modified: 2019-06-11T14:15:54.604+0000 + name: Sequence Ontology + namespaceEmbeddedInLui: true + pattern: ^SO:\d{7}$ + prefix: so + resources: + - deprecated: false + deprecationDate: + description: Sequence Ontology + id: 275 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 274 + location: + countryCode: US + countryName: United States + name: Department of Molecular and Cellular Biology, University of California, Berkeley + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100112 + name: Sequence Ontology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.sequenceontology.org/ + sampleId: '0000704' + urlPattern: http://www.sequenceontology.org/miso/current_release/term/SO:{$id} + - deprecated: false + deprecationDate: + description: Sequence Ontology through BioPortal + id: 276 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100241 + name: Sequence Ontology through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/SO + sampleId: '0000704' + urlPattern: http://purl.bioontology.org/ontology/SO/SO:{$id} + - deprecated: false + deprecationDate: + description: Sequence Ontology through Ontology Lookup Service (OLS) + id: 277 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100628 + name: Sequence Ontology through Ontology Lookup Service (OLS) + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/so + sampleId: '0000704' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/so/terms?obo_id=SO:{$id} + sampleId: '0000704' + - created: 2019-06-11T14:15:55.126+0000 + deprecated: false + deprecationDate: + description: Rhea is a manually annotated reaction database, where all reaction participants (reactants and products) are linked to the ChEBI database (Chemical Entities of Biological Interest), providing detailed information about structure, formulae and charge. It is populated with the reactions found in the EC list, IntEnz and ENZYME databases), as well as other biochemical reactions, including those that are often termed "spontaneous". + id: 278 + mirId: MIR:00000082 + modified: 2019-06-11T14:15:55.126+0000 + name: Rhea + namespaceEmbeddedInLui: false + pattern: ^\d{5}$ + prefix: rhea + resources: + - deprecated: false + deprecationDate: + description: Rhea + id: 280 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 279 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute and Swiss Institute of Bioinformatics + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100113 + name: Rhea + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.rhea-db.org/ + sampleId: '12345' + urlPattern: https://www.rhea-db.org/reaction?id={$id} + sampleId: '12345' + - created: 2019-06-11T14:15:55.368+0000 + deprecated: false + deprecationDate: + description: ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature. + id: 281 + mirId: MIR:00000084 + modified: 2019-06-11T14:15:55.368+0000 + name: ChEMBL compound + namespaceEmbeddedInLui: false + pattern: ^CHEMBL\d+$ + prefix: chembl.compound + resources: + - deprecated: false + deprecationDate: + description: ChEMBL compound database at EBI + id: 282 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100115 + name: ChEMBL compound database at EBI + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/chembldb/ + sampleId: CHEMBL308052 + urlPattern: https://www.ebi.ac.uk/chembl/compound/inspect/{$id} + - deprecated: false + deprecationDate: + description: ChEMBL compound RDF + id: 284 + institution: + description: >- + Maastricht University (UM) is the most international university in + the Netherlands and, with 18,000 students and 4,400 employees, is + still growing. The university stands out for its innovative + education model, international character and multidisciplinary + approach to research and education. + + Thanks to its high-quality research and study programmes as well as a strong focus on social engagement, UM has quickly built up a solid reputation. Today it is considered one of the best young universities in the world. + homeUrl: https://www.maastrichtuniversity.nl + id: 283 + location: + countryCode: NL + countryName: Netherlands + name: Maastricht University + rorId: https://ror.org/02jz4aj89 + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00100484 + name: ChEMBL compound RDF + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://github.com/egonw/chembl.rdf + sampleId: CHEMBL308052 + urlPattern: http://linkedchemistry.info/chembl/chemblid/{$id} + - deprecated: false + deprecationDate: + description: ChEMBL compound RDF through EBI RDF Platform + id: 285 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100744 + name: ChEMBL compound RDF through EBI RDF Platform + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.ebi.ac.uk/rdf/services/chembl/ + sampleId: CHEMBL308052 + urlPattern: https://rdf.ebi.ac.uk/resource/chembl/molecule/{$id} + sampleId: CHEMBL308052 + - created: 2019-06-11T14:15:55.880+0000 + deprecated: false + deprecationDate: + description: ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature. + id: 286 + mirId: MIR:00000085 + modified: 2019-06-11T14:15:55.880+0000 + name: ChEMBL target + namespaceEmbeddedInLui: false + pattern: ^CHEMBL\d+$ + prefix: chembl.target + resources: + - deprecated: false + deprecationDate: + description: ChEMBL targets database at EBI + id: 287 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100116 + name: ChEMBL targets database at EBI + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/chembldb/ + sampleId: CHEMBL3467 + urlPattern: https://www.ebi.ac.uk/chembl/target/inspect/{$id} + - deprecated: false + deprecationDate: + description: ChEMBL target RDF + id: 288 + institution: + description: >- + Maastricht University (UM) is the most international university in + the Netherlands and, with 18,000 students and 4,400 employees, is + still growing. The university stands out for its innovative + education model, international character and multidisciplinary + approach to research and education. + + Thanks to its high-quality research and study programmes as well as a strong focus on social engagement, UM has quickly built up a solid reputation. Today it is considered one of the best young universities in the world. + homeUrl: https://www.maastrichtuniversity.nl + id: 283 + location: + countryCode: NL + countryName: Netherlands + name: Maastricht University + rorId: https://ror.org/02jz4aj89 + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00100485 + name: ChEMBL target RDF + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://github.com/egonw/chembl.rdf + sampleId: CHEMBL3467 + urlPattern: http://linkedchemistry.info/chembl/chemblid/{$id} + - deprecated: false + deprecationDate: + description: ChEMBL target RDF through EBI RDF Platform + id: 289 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100743 + name: ChEMBL target RDF through EBI RDF Platform + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://rdf.ebi.ac.uk/resource/chembl/ + sampleId: CHEMBL3467 + urlPattern: https://rdf.ebi.ac.uk/resource/chembl/target/{$id} + sampleId: CHEMBL3467 + - created: 2019-06-11T14:15:56.334+0000 + deprecated: false + deprecationDate: + description: SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information. + id: 290 + mirId: MIR:00000086 + modified: 2019-06-11T14:15:56.334+0000 + name: SABIO-RK Kinetic Record + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: sabiork.kineticrecord + resources: + - deprecated: false + deprecationDate: + description: SABIO-RK Reaction Kinetics Database - Kinetic Dataset + id: 291 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 151 + location: + countryCode: DE + countryName: Germany + name: Heidelberg Institute for Theoretical Studies (HITS gGmbH) + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100117 + name: SABIO-RK Reaction Kinetics Database - Kinetic Dataset + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://sabiork.h-its.org/ + sampleId: '5046' + urlPattern: http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid={$id} + sampleId: '5046' + - created: 2019-06-11T14:15:56.548+0000 + deprecated: false + deprecationDate: + description: The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available. + id: 292 + mirId: MIR:00000087 + modified: 2019-06-11T14:15:56.548+0000 + name: Ligand-Gated Ion Channel database + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: lgic + resources: + - deprecated: false + deprecationDate: + description: Ligand-Gated Ion Channel database at EBI + id: 293 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100118 + name: Ligand-Gated Ion Channel database at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb.php + sampleId: 5HT3Arano + urlPattern: https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/{$id}.php + sampleId: 5HT3Arano + - created: 2019-06-11T14:15:56.747+0000 + deprecated: false + deprecationDate: + description: The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels; Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels. + id: 294 + mirId: MIR:00000088 + modified: 2019-06-11T14:15:56.747+0000 + name: Anatomical Therapeutic Chemical + namespaceEmbeddedInLui: false + pattern: ^[A-Z](\d+([A-Z]{1,2}(\d+)?)?)?$ + prefix: atc + resources: + - deprecated: false + deprecationDate: + description: Anatomical Therapeutic Chemical Index at WHO + id: 296 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 295 + location: + countryCode: CH + countryName: Switzerland + name: World Health Organisation + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100119 + name: Anatomical Therapeutic Chemical Index at WHO + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.whocc.no/atc_ddd_index/ + sampleId: A10BA02 + urlPattern: http://www.whocc.no/atc_ddd_index/?code={$id} + sampleId: A10BA02 + - created: 2019-06-11T14:15:57.006+0000 + deprecated: false + deprecationDate: + description: "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. \r\nPharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies." + id: 297 + mirId: MIR:00000089 + modified: 2019-06-11T14:15:57.006+0000 + name: PharmGKB Pathways + namespaceEmbeddedInLui: false + pattern: ^PA\d+$ + prefix: pharmgkb.pathways + resources: + - deprecated: false + deprecationDate: + description: PharmGKB at Stanford + id: 299 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 298 + location: + countryCode: US + countryName: United States + name: Department of Genetics, School of Medicine, Stanford University, Stanford, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100120 + name: PharmGKB at Stanford + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.pharmgkb.org/ + sampleId: PA146123006 + urlPattern: http://www.pharmgkb.org/pathway/{$id} + sampleId: PA146123006 + - created: 2019-06-11T14:15:57.258+0000 + deprecated: false + deprecationDate: + description: The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. + id: 300 + mirId: MIR:00000090 + modified: 2019-06-11T14:15:57.258+0000 + name: PharmGKB Disease + namespaceEmbeddedInLui: false + pattern: ^PA\d+$ + prefix: pharmgkb.disease + resources: + - deprecated: false + deprecationDate: + description: PharmGKB Disease at Stanford + id: 301 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 298 + location: + countryCode: US + countryName: United States + name: Department of Genetics, School of Medicine, Stanford University, Stanford, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100121 + name: PharmGKB Disease at Stanford + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.pharmgkb.org/ + sampleId: PA447218 + urlPattern: http://www.pharmgkb.org/disease/{$id} + sampleId: PA447218 + - created: 2019-06-11T14:15:57.451+0000 + deprecated: false + deprecationDate: + description: The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. + id: 302 + mirId: MIR:00000091 + modified: 2019-06-11T14:15:57.451+0000 + name: PharmGKB Drug + namespaceEmbeddedInLui: false + pattern: ^PA\d+$ + prefix: pharmgkb.drug + resources: + - deprecated: false + deprecationDate: + description: PharmGKB Drug at Stanford + id: 303 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 298 + location: + countryCode: US + countryName: United States + name: Department of Genetics, School of Medicine, Stanford University, Stanford, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100122 + name: PharmGKB Drug at Stanford + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.pharmgkb.org/ + sampleId: PA448710 + urlPattern: http://www.pharmgkb.org/drug/{$id} + sampleId: PA448710 + - created: 2019-06-11T14:15:57.654+0000 + deprecated: false + deprecationDate: + description: The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target. + id: 304 + mirId: MIR:00000092 + modified: 2019-06-11T14:15:57.654+0000 + name: TTD Drug + namespaceEmbeddedInLui: false + pattern: ^DAP\d+$ + prefix: ttd.drug + resources: + - deprecated: false + deprecationDate: + description: Therapeutic Target Database Drug + id: 306 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 305 + location: + countryCode: SG + countryName: Singapore + name: Computational Science Department, National University of Singapore + rorId: + location: + countryCode: SG + countryName: Singapore + mirId: MIR:00100123 + name: Therapeutic Target Database Drug + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bidd.nus.edu.sg/group/ttd/ttd.asp + sampleId: DAP000773 + urlPattern: http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID={$id} + sampleId: DAP000773 + - created: 2019-06-11T14:15:57.896+0000 + deprecated: false + deprecationDate: + description: The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target. + id: 307 + mirId: MIR:00000093 + modified: 2019-06-11T14:15:57.896+0000 + name: TTD Target + namespaceEmbeddedInLui: false + pattern: ^TTDS\d+$ + prefix: ttd.target + resources: + - deprecated: false + deprecationDate: + description: Therapeutic Target Database Target + id: 308 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 305 + location: + countryCode: SG + countryName: Singapore + name: Computational Science Department, National University of Singapore + rorId: + location: + countryCode: SG + countryName: Singapore + mirId: MIR:00100124 + name: Therapeutic Target Database Target + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bidd.nus.edu.sg/group/ttd/ttd.asp + sampleId: TTDS00056 + urlPattern: http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID={$id} + sampleId: TTDS00056 + - created: 2019-06-11T14:15:58.106+0000 + deprecated: false + deprecationDate: + description: 'NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments.' + id: 309 + mirId: MIR:00000094 + modified: 2019-06-11T14:15:58.106+0000 + name: NeuronDB + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: neurondb + resources: + - deprecated: false + deprecationDate: + description: NeuronDB at SenseLab + id: 311 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 310 + location: + countryCode: US + countryName: United States + name: Yale University School of Medicine + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100125 + name: NeuronDB at SenseLab + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://senselab.med.yale.edu/NeuronDB/ + sampleId: '265' + urlPattern: http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id={$id} + sampleId: '265' + - created: 2019-06-11T14:15:58.342+0000 + deprecated: false + deprecationDate: + description: NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons. + id: 312 + mirId: MIR:00000095 + modified: 2019-06-11T14:15:58.342+0000 + name: NeuroMorpho + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: neuromorpho + resources: + - deprecated: false + deprecationDate: + description: NeuroMorpho + id: 314 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 313 + location: + countryCode: US + countryName: United States + name: Krasnow Institute, Virginia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100126 + name: NeuroMorpho + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://neuromorpho.org/index.jsp + sampleId: Rosa2 + urlPattern: http://neuromorpho.org/neuron_info.jsp?neuron_name={$id} + sampleId: Rosa2 + - created: 2019-06-11T14:15:58.577+0000 + deprecated: false + deprecationDate: + description: ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest. + id: 315 + mirId: MIR:00000096 + modified: 2019-06-11T14:15:58.577+0000 + name: ChemIDplus + namespaceEmbeddedInLui: false + pattern: ^\d+\-\d+\-\d+$ + prefix: chemidplus + resources: + - deprecated: false + deprecationDate: + description: ChemIDplus at National Library of Medicine + id: 317 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 316 + location: + countryCode: US + countryName: United States + name: National Library of Medicine, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100127 + name: ChemIDplus at National Library of Medicine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://chem.nlm.nih.gov/chemidplus/chemidheavy.jsp + sampleId: 57-27-2 + urlPattern: https://chem.nlm.nih.gov/chemidplus/rn/{$id} + sampleId: 57-27-2 + - created: 2019-06-11T14:15:58.906+0000 + deprecated: false + deprecationDate: + description: The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources. + id: 318 + mirId: MIR:00000097 + modified: 2019-06-11T14:15:58.906+0000 + name: BioSystems + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: biosystems + resources: + - deprecated: false + deprecationDate: + description: BioSystems database at NCBI + id: 319 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100128 + name: BioSystems database at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/biosystems/ + sampleId: '001' + urlPattern: https://www.ncbi.nlm.nih.gov/biosystems/{$id} + sampleId: '001' + - created: 2019-06-11T14:15:59.108+0000 + deprecated: false + deprecationDate: + description: The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences. + id: 320 + mirId: MIR:00000098 + modified: 2019-06-11T14:15:59.108+0000 + name: CTD Chemical + namespaceEmbeddedInLui: false + pattern: ^[CD]\d+$ + prefix: ctd.chemical + resources: + - deprecated: false + deprecationDate: + description: Comparative Toxicogenomics Database (Chemical) + id: 322 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 321 + location: + countryCode: US + countryName: United States + name: The Mount Desert Island Biological Laboratory + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100129 + name: Comparative Toxicogenomics Database (Chemical) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ctdbase.org/ + sampleId: D001151 + urlPattern: http://ctdbase.org/detail.go?type=chem&acc={$id} + sampleId: D001151 + - created: 2019-06-11T14:15:59.348+0000 + deprecated: false + deprecationDate: + description: The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences. + id: 323 + mirId: MIR:00000099 + modified: 2019-06-11T14:15:59.348+0000 + name: CTD Disease + namespaceEmbeddedInLui: false + pattern: ^D\d+$ + prefix: ctd.disease + resources: + - deprecated: false + deprecationDate: + description: Comparative Toxicogenomics Database (Disease) + id: 324 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 321 + location: + countryCode: US + countryName: United States + name: The Mount Desert Island Biological Laboratory + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100130 + name: Comparative Toxicogenomics Database (Disease) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ctdbase.org/ + sampleId: D053716 + urlPattern: http://ctdbase.org/detail.go?type=disease&db=MESH&acc={$id} + sampleId: D053716 + - created: 2019-06-11T14:15:59.547+0000 + deprecated: false + deprecationDate: + description: The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences. + id: 325 + mirId: MIR:00000100 + modified: 2019-06-11T14:15:59.547+0000 + name: CTD Gene + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: ctd.gene + resources: + - deprecated: false + deprecationDate: + description: Comparative Toxicogenomics Database (Gene) + id: 326 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 321 + location: + countryCode: US + countryName: United States + name: The Mount Desert Island Biological Laboratory + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100131 + name: Comparative Toxicogenomics Database (Gene) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ctdbase.org/ + sampleId: '101' + urlPattern: http://ctdbase.org/detail.go?type=gene&acc={$id} + sampleId: '101' + - created: 2019-06-11T14:15:59.756+0000 + deprecated: false + deprecationDate: + description: BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data. + id: 327 + mirId: MIR:00000101 + modified: 2019-06-11T14:15:59.756+0000 + name: BioNumbers + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: bionumbers + resources: + - deprecated: false + deprecationDate: + description: BioNumbers database + id: 329 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 328 + location: + countryCode: IL + countryName: Israel + name: Weizmann Institute + rorId: + location: + countryCode: IL + countryName: Israel + mirId: MIR:00100132 + name: BioNumbers database + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://bionumbers.hms.harvard.edu + sampleId: '104674' + urlPattern: https://bionumbers.hms.harvard.edu/bionumber.aspx?id={$id} + sampleId: '104674' + - created: 2019-06-11T14:16:00.005+0000 + deprecated: false + deprecationDate: + description: The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information. + id: 330 + mirId: MIR:00000102 + modified: 2019-06-11T14:16:00.005+0000 + name: DrugBank + namespaceEmbeddedInLui: false + pattern: ^DB\d{5}$ + prefix: drugbank + resources: + - deprecated: false + deprecationDate: + description: DrugBank drug information + id: 332 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 331 + location: + countryCode: CA + countryName: Canada + name: Departments of Computing Science & Biological Sciences, University of Alberta + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100133 + name: DrugBank drug information + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.drugbank.ca/ + sampleId: DB00001 + urlPattern: http://www.drugbank.ca/drugs/{$id} + sampleId: DB00001 + - created: 2019-06-11T14:16:00.251+0000 + deprecated: false + deprecationDate: + description: Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information. + id: 333 + mirId: MIR:00000103 + modified: 2019-06-11T14:16:00.251+0000 + name: T3DB + namespaceEmbeddedInLui: false + pattern: ^T3D\d+$ + prefix: t3db + resources: + - deprecated: false + deprecationDate: + description: Toxin and Toxin Target Database + id: 335 + institution: + description: The University of Alberta in Edmonton is one of Canada's top teaching and research universities, with an international reputation for excellence across the humanities, sciences, creative arts, business, engineering and health sciences. + homeUrl: https://www.ualberta.ca + id: 334 + location: + countryCode: CA + countryName: Canada + name: University of Alberta + rorId: https://ror.org/0160cpw27 + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100136 + name: Toxin and Toxin Target Database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.t3db.org/ + sampleId: T3D0001 + urlPattern: http://www.t3db.org/toxins/{$id} + sampleId: T3D0001 + - created: 2019-06-11T14:16:00.499+0000 + deprecated: false + deprecationDate: + description: The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram. + id: 336 + mirId: MIR:00000104 + modified: 2019-06-11T14:16:00.499+0000 + name: Small Molecule Pathway Database + namespaceEmbeddedInLui: false + pattern: ^SMP\d+$ + prefix: smpdb + resources: + - deprecated: false + deprecationDate: + description: Small Molecule Pathway Database + id: 337 + institution: + description: The University of Alberta in Edmonton is one of Canada's top teaching and research universities, with an international reputation for excellence across the humanities, sciences, creative arts, business, engineering and health sciences. + homeUrl: https://www.ualberta.ca + id: 334 + location: + countryCode: CA + countryName: Canada + name: University of Alberta + rorId: https://ror.org/0160cpw27 + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100137 + name: Small Molecule Pathway Database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://smpdb.ca/ + sampleId: SMP00001 + urlPattern: http://smpdb.ca/view/{$id} + sampleId: SMP00001 + - created: 2019-06-11T14:16:00.712+0000 + deprecated: false + deprecationDate: + description: PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database. + id: 338 + mirId: MIR:00000105 + modified: 2019-06-11T14:16:00.712+0000 + name: PhosphoSite Protein + namespaceEmbeddedInLui: false + pattern: ^\d{5}$ + prefix: phosphosite.protein + resources: + - deprecated: false + deprecationDate: + description: PhosphoSite + id: 340 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 339 + location: + countryCode: US + countryName: United States + name: Cell Signaling Technology, Inc. + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100138 + name: PhosphoSite + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.phosphosite.org/homeAction.do + sampleId: '12300' + urlPattern: http://www.phosphosite.org/proteinAction.do?id={$id} + sampleId: '12300' + - created: 2019-06-11T14:16:00.951+0000 + deprecated: false + deprecationDate: + description: GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed. + id: 341 + mirId: MIR:00000106 + modified: 2019-06-11T14:16:00.951+0000 + name: GeneDB + namespaceEmbeddedInLui: false + pattern: ^[\w\d\.-]*$ + prefix: genedb + resources: + - deprecated: false + deprecationDate: + description: GeneDB at Sanger Institute + id: 343 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 342 + location: + countryCode: GB + countryName: United Kingdom + name: Pathogen Genomics, Sanger Institute and European Bioinformatics Institute + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100139 + name: GeneDB at Sanger Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.genedb.org/ + sampleId: LinJ.20.0070 + urlPattern: https://www.genedb.org/gene/{$id} + sampleId: LinJ.20.0070 + - created: 2019-06-11T14:16:01.178+0000 + deprecated: false + deprecationDate: + description: The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology. + id: 344 + mirId: MIR:00000107 + modified: 2019-06-11T14:16:01.178+0000 + name: TEDDY + namespaceEmbeddedInLui: false + pattern: ^TEDDY_\d{7}$ + prefix: biomodels.teddy + resources: + - deprecated: false + deprecationDate: + description: TEDDY through BioPortal + id: 345 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100140 + name: TEDDY through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://teddyontology.sourceforge.net/ + sampleId: TEDDY_0000066 + urlPattern: http://purl.bioontology.org/ontology/TEDDY/{$id} + - deprecated: false + deprecationDate: + description: TEDDY though OLS + id: 346 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100761 + name: TEDDY though OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/teddy + sampleId: TEDDY_0000066 + urlPattern: https://www.ebi.ac.uk/ols/ontologies/teddy/terms?short_form={$id} + sampleId: TEDDY_0000066 + - created: 2019-06-11T14:16:01.508+0000 + deprecated: false + deprecationDate: + description: The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment. + id: 347 + mirId: MIR:00000108 + modified: 2019-06-11T14:16:01.508+0000 + name: KiSAO + namespaceEmbeddedInLui: false + pattern: ^KISAO_\d+$ + prefix: biomodels.kisao + resources: + - deprecated: false + deprecationDate: + description: KiSAO via NCBO's Bioportal + id: 348 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100141 + name: KiSAO via NCBO's Bioportal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/KISAO + sampleId: KISAO_0000057 + urlPattern: http://purl.bioontology.org/ontology/KISAO/kisao:{$id} + - deprecated: false + deprecationDate: + description: KiSAO through OLS + id: 349 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100757 + name: KiSAO through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/kisao + sampleId: KISAO_0000057 + urlPattern: https://www.ebi.ac.uk/ols/ontologies/kisao/terms?short_form={$id} + sampleId: KISAO_0000057 + - created: 2019-06-11T14:16:02.066+0000 + deprecated: false + deprecationDate: + description: The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi. + id: 352 + mirId: MIR:00000110 + modified: 2019-06-11T14:16:02.066+0000 + name: Cell Type Ontology + namespaceEmbeddedInLui: true + pattern: ^CL:\d{7}$ + prefix: cl + resources: + - deprecated: false + deprecationDate: + description: Cell Type Ontology through OLS + id: 353 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100143 + name: Cell Type Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/cl + sampleId: '0000232' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:{$id} + - deprecated: false + deprecationDate: + description: Cell Type Ontology through BioPortal + id: 354 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100234 + name: Cell Type Ontology through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/CL + sampleId: '0000232' + urlPattern: http://purl.bioontology.org/ontology/CL/CL:{$id} + sampleId: '0000232' + - created: 2019-06-11T14:16:02.399+0000 + deprecated: false + deprecationDate: + description: The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms. + id: 355 + mirId: MIR:00000111 + modified: 2019-06-11T14:16:02.399+0000 + name: Brenda Tissue Ontology + namespaceEmbeddedInLui: true + pattern: ^BTO:\d{7}$ + prefix: bto + resources: + - deprecated: false + deprecationDate: + description: Brenda Tissue Ontology through OLS + id: 356 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100144 + name: Brenda Tissue Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/bto + sampleId: '0000146' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/bto/terms?obo_id=BTO:{$id} + - deprecated: false + deprecationDate: + description: Brenda Tissue Ontology through BioPortal + id: 357 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100233 + name: Brenda Tissue Ontology through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/BTO + sampleId: '0000146' + urlPattern: http://purl.bioontology.org/ontology/BTO/BTO:{$id} + sampleId: '0000146' + - created: 2019-06-11T14:16:02.730+0000 + deprecated: false + deprecationDate: + description: PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation. + id: 358 + mirId: MIR:00000112 + modified: 2019-06-11T14:16:02.730+0000 + name: PATO + namespaceEmbeddedInLui: true + pattern: ^PATO:\d{7}$ + prefix: pato + resources: + - deprecated: false + deprecationDate: + description: PATO through OLS + id: 359 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100145 + name: PATO through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/pato + sampleId: '0001998' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/pato/terms?obo_id=PATO:{$id} + - deprecated: false + deprecationDate: + description: PATO through BioPortal + id: 360 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100238 + name: PATO through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/PATO + sampleId: '0001998' + urlPattern: http://purl.bioontology.org/ontology/PATO/PATO:{$id} + sampleId: '0001998' + - created: 2019-06-11T14:16:03.054+0000 + deprecated: false + deprecationDate: + description: The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names. + id: 361 + mirId: MIR:00000113 + modified: 2019-06-11T14:16:03.054+0000 + name: Chemical Component Dictionary + namespaceEmbeddedInLui: false + pattern: ^\w{3}$ + prefix: pdb-ccd + resources: + - deprecated: false + deprecationDate: + description: Protein Data Bank Chemical Component Dictionary at EBI + id: 362 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100146 + name: Protein Data Bank Chemical Component Dictionary at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/pdbe-srv/pdbechem/ + sampleId: AB0 + urlPattern: https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/{$id} + sampleId: AB0 + - created: 2019-06-11T14:16:03.253+0000 + deprecated: false + deprecationDate: + description: GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links. + id: 363 + mirId: MIR:00000114 + modified: 2019-06-11T14:16:03.253+0000 + name: GlycomeDB + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: glycomedb + resources: + - deprecated: false + deprecationDate: + description: GlycomeDB carbohydrate structure database + id: 365 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 364 + location: + countryCode: DE + countryName: Germany + name: German Cancer Research Center, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100147 + name: GlycomeDB carbohydrate structure database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://glytoucan.org/ + sampleId: G77500AY + urlPattern: https://glytoucan.org/Structures/Glycans/{$id} + sampleId: G77500AY + - created: 2019-06-11T14:16:03.490+0000 + deprecated: false + deprecationDate: + description: LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins. + id: 366 + mirId: MIR:00000115 + modified: 2019-06-11T14:16:03.490+0000 + name: LipidBank + namespaceEmbeddedInLui: false + pattern: ^\w+\d+$ + prefix: lipidbank + resources: + - deprecated: false + deprecationDate: + description: LipidBank the Lipid database + id: 368 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 367 + location: + countryCode: JP + countryName: Japan + name: Department of Computational Biology, University of Tokyo, Tokyo + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100148 + name: LipidBank the Lipid database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://lipidbank.jp/index.html + sampleId: BBA0001 + urlPattern: http://lipidbank.jp/cgi-bin/detail.cgi?id={$id} + sampleId: BBA0001 + - created: 2019-06-11T14:16:03.735+0000 + deprecated: false + deprecationDate: + description: KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms. + id: 369 + mirId: MIR:00000116 + modified: 2019-06-11T14:16:03.735+0000 + name: KEGG Orthology + namespaceEmbeddedInLui: false + pattern: ^K\d+$ + prefix: kegg.orthology + resources: + - deprecated: false + deprecationDate: + description: KEGG Orthology Database + id: 370 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 367 + location: + countryCode: JP + countryName: Japan + name: Department of Computational Biology, University of Tokyo, Tokyo + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100149 + name: KEGG Orthology Database + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.genome.jp/kegg/ko.html + sampleId: K00001 + urlPattern: http://www.kegg.jp/entry/{$id} + sampleId: K00001 + - created: 2019-06-11T14:16:03.923+0000 + deprecated: false + deprecationDate: + description: ProDom is a database of protein domain families generated from the global comparison of all available protein sequences. + id: 371 + mirId: MIR:00000117 + modified: 2019-06-11T14:16:03.923+0000 + name: ProDom + namespaceEmbeddedInLui: false + pattern: ^PD\d+$ + prefix: prodom + resources: + - deprecated: false + deprecationDate: + description: ProDom Protein Domain Database + id: 373 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 372 + location: + countryCode: FR + countryName: France + name: Laboratoire des Interactions Plantes-Microorganismes, INRA/CNRS + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100150 + name: ProDom Protein Domain Database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://prodom.prabi.fr/prodom/current/html/home.php + sampleId: PD10000 + urlPattern: http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query={$id} + sampleId: PD10000 + - created: 2019-06-11T14:16:04.151+0000 + deprecated: false + deprecationDate: + description: The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures. + id: 374 + mirId: MIR:00000118 + modified: 2019-06-11T14:16:04.151+0000 + name: SMART + namespaceEmbeddedInLui: false + pattern: ^SM\d{5}$ + prefix: smart + resources: + - deprecated: false + deprecationDate: + description: SMART (Simple Modular Architecture Research Tool) + id: 376 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 375 + location: + countryCode: DE + countryName: Germany + name: EMBL, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100151 + name: SMART (Simple Modular Architecture Research Tool) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://smart.embl-heidelberg.de/ + sampleId: SM00015 + urlPattern: http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN={$id} + sampleId: SM00015 + - created: 2019-06-11T14:16:04.400+0000 + deprecated: false + deprecationDate: + description: The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution. + id: 377 + mirId: MIR:00000119 + modified: 2019-06-11T14:16:04.400+0000 + name: Conserved Domain Database + namespaceEmbeddedInLui: false + pattern: ^(cd)?\d{5}$ + prefix: cdd + resources: + - deprecated: false + deprecationDate: + description: Conserved Domain Database at NCBI + id: 379 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 378 + location: + countryCode: US + countryName: United States + name: National Library of Medicine, National Institutes of Health, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100152 + name: Conserved Domain Database at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd + sampleId: cd00400 + urlPattern: https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid={$id} + sampleId: cd00400 + - created: 2019-06-11T14:16:04.654+0000 + deprecated: false + deprecationDate: + description: The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies. + id: 380 + mirId: MIR:00000120 + modified: 2019-06-11T14:16:04.654+0000 + name: Relation Ontology + namespaceEmbeddedInLui: false + pattern: ^RO_\d{7}$ + prefix: ro + resources: + - deprecated: false + deprecationDate: + description: OBO Relation Ontology through OntoBee + id: 382 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 381 + location: + countryCode: US + countryName: United States + name: University of Michigan Medical School (MI), Lawrence Berkeley National Laboratory (CA) and Science Commons (MA) + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100764 + name: OBO Relation Ontology through OntoBee + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://obofoundry.org/ontology/ro.html + sampleId: RO_0002533 + urlPattern: http://purl.obolibrary.org/obo/{$id} + - deprecated: false + deprecationDate: + description: OBO Relation Ontology through OLS + id: 383 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100767 + name: OBO Relation Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/ro + sampleId: RO_0002533 + urlPattern: https://www.ebi.ac.uk/ols/ontologies/ro/terms?short_form={$id} + sampleId: RO_0002533 + - created: 2019-06-11T14:16:05.062+0000 + deprecated: false + deprecationDate: + description: The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites. + id: 384 + mirId: MIR:00000121 + modified: 2019-06-11T14:16:05.062+0000 + name: Molecular Modeling Database + namespaceEmbeddedInLui: false + pattern: ^\d{1,5}$ + prefix: mmdb + resources: + - deprecated: false + deprecationDate: + description: MMDB at NCBI + id: 385 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 378 + location: + countryCode: US + countryName: United States + name: National Library of Medicine, National Institutes of Health, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100154 + name: MMDB at NCBI + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure + sampleId: '50885' + urlPattern: http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid={$id} + sampleId: '50885' + - created: 2019-06-11T14:16:05.272+0000 + deprecated: false + deprecationDate: + description: The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources. + id: 386 + mirId: MIR:00000122 + modified: 2019-06-11T14:16:05.272+0000 + name: IMEx + namespaceEmbeddedInLui: false + pattern: ^IM-\d+(-?)(\d+?)$ + prefix: imex + resources: + - deprecated: false + deprecationDate: + description: IMEx Consortium running at EBI + id: 387 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100155 + name: IMEx Consortium running at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://www.imexconsortium.org/ + sampleId: IM-19210-3 + urlPattern: https://www.ebi.ac.uk/intact/imex/main.xhtml?query={$id} + - deprecated: false + deprecationDate: + description: IMEx Consortium though Intact + id: 388 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100663 + name: IMEx Consortium though Intact + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.ebi.ac.uk/intact/ + sampleId: IM-19210-3 + urlPattern: https://imexcentral.org/icentral/imex/rec/{$id} + sampleId: IM-19210-3 + - created: 2019-06-11T14:16:05.614+0000 + deprecated: false + deprecationDate: + description: 'iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived.' + id: 389 + mirId: MIR:00000123 + modified: 2019-06-11T14:16:05.614+0000 + name: iRefWeb + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: irefweb + resources: + - deprecated: false + deprecationDate: + description: iRefWeb Protein Interaction Reference Index + id: 391 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 390 + location: + countryCode: CA + countryName: Canada + name: Wodak Lab, Hospital for Sick Children, Toronto + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100156 + name: iRefWeb Protein Interaction Reference Index + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://wodaklab.org/iRefWeb/ + sampleId: '617102' + urlPattern: http://wodaklab.org/iRefWeb/interaction/show/{$id} + sampleId: '617102' + - created: 2019-06-11T14:16:05.849+0000 + deprecated: false + deprecationDate: + description: The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts. + id: 392 + mirId: MIR:00000124 + modified: 2019-06-11T14:16:05.849+0000 + name: Microbial Protein Interaction Database + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: mpid + resources: + - deprecated: false + deprecationDate: + description: Microbial Protein Interaction Database + id: 394 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 393 + location: + countryCode: US + countryName: United States + name: J. Craig Venter Institute, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100157 + name: Microbial Protein Interaction Database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.jcvi.org/mpidb/about.php + sampleId: '172' + urlPattern: http://www.jcvi.org/mpidb/experiment.php?interaction_id={$id} + - deprecated: false + deprecationDate: + description: Microbial Protein Interaction Database subset through IntAct + id: 395 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100655 + name: Microbial Protein Interaction Database subset through IntAct + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/intact/ + sampleId: '1776' + urlPattern: https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-{$id} + sampleId: '172' + - created: 2019-06-11T14:16:06.208+0000 + deprecated: false + deprecationDate: + description: PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence. + id: 396 + mirId: MIR:00000125 + modified: 2019-06-11T14:16:06.208+0000 + name: PhosphoSite Residue + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: phosphosite.residue + resources: + - deprecated: false + deprecationDate: + description: PhosphoSite Residue + id: 397 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 339 + location: + countryCode: US + countryName: United States + name: Cell Signaling Technology, Inc. + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100159 + name: PhosphoSite Residue + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.phosphosite.org/homeAction.do + sampleId: '2842' + urlPattern: http://www.phosphosite.org/siteAction.do?id={$id} + sampleId: '2842' + - created: 2019-06-11T14:16:06.417+0000 + deprecated: false + deprecationDate: + description: The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex). + id: 398 + mirId: MIR:00000126 + modified: 2019-06-11T14:16:06.417+0000 + name: NeuroLex + namespaceEmbeddedInLui: false + pattern: ^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO|nifext_)\d+$ + prefix: neurolex + resources: + - deprecated: false + deprecationDate: + description: NeuroLex Neuroscience Lexicon + id: 400 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 399 + location: + countryCode: US + countryName: United States + name: Department of Neuroscience, University of California, San Diego + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100160 + name: NeuroLex Neuroscience Lexicon + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.neurolex.org/wiki/Main_Page + sampleId: Birnlex_721 + urlPattern: http://www.neurolex.org/wiki/{$id} + - deprecated: false + deprecationDate: + description: NeuroLex through NCBO's BioPortal + id: 401 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100183 + name: NeuroLex through NCBO's BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/BIRNLEX + sampleId: birnlex_1672 + urlPattern: http://purl.bioontology.org/ontology/BIRNLEX/{$id} + sampleId: Birnlex_721 + - created: 2019-06-11T14:16:06.780+0000 + deprecated: false + deprecationDate: + description: The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO). + id: 402 + mirId: MIR:00000127 + modified: 2019-06-11T14:16:06.780+0000 + name: Ontology for Biomedical Investigations + namespaceEmbeddedInLui: false + pattern: (^OBI:\d{7}$)|(^OBI_\d{7}$) + prefix: obi + resources: + - deprecated: false + deprecationDate: + description: OBI through Ontobee + id: 404 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 403 + location: + countryCode: US + countryName: United States + name: University of Michigan Medical School (MI), awrence Berkeley National Laboratory (CA) and Science Commons (MA) + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100162 + name: OBI through Ontobee + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.ontobee.org/ + sampleId: OBI_0000070 + urlPattern: http://purl.obolibrary.org/obo/{$id} + - deprecated: false + deprecationDate: + description: Ontology for Biomedical Investigations through Bioportal + id: 405 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100177 + name: Ontology for Biomedical Investigations through Bioportal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/OBI + sampleId: OBI:0000070 + urlPattern: http://purl.bioontology.org/ontology/OBI/{$id} + - deprecated: false + deprecationDate: + description: OBI through OLS + id: 406 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100760 + name: OBI through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/obi + sampleId: OBI:0000070 + urlPattern: https://www.ebi.ac.uk/ols/ontologies/obi/terms?obo_id={$id} + sampleId: OBI_0000070 + - created: 2019-06-11T14:16:44.568+0000 + deprecated: false + deprecationDate: + description: ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources. + id: 831 + mirId: MIR:00000283 + modified: 2019-06-11T14:16:44.568+0000 + name: ASAP + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9-]+$ + prefix: asap + resources: + - deprecated: false + deprecationDate: + description: ASAP at University of Wisconsin + id: 833 + institution: + description: >- + The University of Wisconsinā€“Madison is a public research + university in Madison, Wisconsin. Founded when Wisconsin achieved + statehood in 1848, UWā€“Madison is the official state university of + Wisconsin, and the flagship campus of the University of Wisconsin + System. + + It was the first public university established in Wisconsin and remains the oldest and largest public university in the state. It became a land-grant institution in 1866. + + The 933-acre (378 ha) main campus, located on the shores of Lake Mendota, includes four National Historic Landmarks. + + The University also owns and operates a historic 1,200-acre (486 ha) arboretum established in 1932, located 4 miles (6.4 km) south of the main campus. + homeUrl: https://www.wisc.edu/ + id: 2054 + location: + countryCode: US + countryName: United States + name: University of Wisconsin-Madison + rorId: https://ror.org/01y2jtd41 + location: + countryCode: US + countryName: United States + mirId: MIR:00100364 + name: ASAP at University of Wisconsin + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://asap.ahabs.wisc.edu/asap/home.php + sampleId: ABE-0009634 + urlPattern: http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID={$id} + sampleId: ABE-0009634 + - created: 2019-06-11T14:16:07.366+0000 + deprecated: false + deprecationDate: + description: SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data. + id: 407 + mirId: MIR:00000128 + modified: 2019-06-11T14:16:07.366+0000 + name: SABIO-RK EC Record + namespaceEmbeddedInLui: false + pattern: ^((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$ + prefix: sabiork.ec + resources: + - deprecated: false + deprecationDate: + description: SABIO-RK Reaction Kinetics Database - Enzyme Classification (EC) + id: 409 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 408 + location: + countryCode: DE + countryName: Germany + name: Heidelberg Institute for Theoretical Studies (HITS gGmbH) + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100163 + name: SABIO-RK Reaction Kinetics Database - Enzyme Classification (EC) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://sabiork.h-its.org/ + sampleId: 2.7.1.1 + urlPattern: http://sabiork.h-its.org/newSearch?q=ecnumber:{$id} + sampleId: 2.7.1.1 + - created: 2019-06-11T14:16:07.624+0000 + deprecated: false + deprecationDate: + description: The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms. + id: 410 + mirId: MIR:00000129 + modified: 2019-06-11T14:16:07.624+0000 + name: Ontology of Physics for Biology + namespaceEmbeddedInLui: false + pattern: ^OPB_\d+$ + prefix: opb + resources: + - deprecated: false + deprecationDate: + description: Ontology of Physics for Biology through Bioportal + id: 411 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100167 + name: Ontology of Physics for Biology through Bioportal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/OPB + sampleId: OPB_00573 + urlPattern: http://purl.bioontology.org/ontology/OPB?conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23{$id} + sampleId: OPB_00573 + - created: 2019-06-11T14:16:07.820+0000 + deprecated: false + deprecationDate: + description: JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser. + id: 412 + mirId: MIR:00000130 + modified: 2019-06-11T14:16:07.820+0000 + name: JWS Online + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: jws + resources: + - deprecated: false + deprecationDate: + description: JWS Online Model Repository at Stellenbosch + id: 414 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 413 + location: + countryCode: ZA + countryName: South Africa + name: Department of Biochemistry, Stellenbosch University + rorId: + location: + countryCode: ZA + countryName: South Africa + mirId: MIR:00100168 + name: JWS Online Model Repository at Stellenbosch + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://jjj.biochem.sun.ac.za/models/ + sampleId: curien + urlPattern: http://jjj.biochem.sun.ac.za/models/{$id}/ + - deprecated: false + deprecationDate: + description: JWS Online Model Repository at Manchester + id: 418 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 417 + location: + countryCode: GB + countryName: United Kingdom + name: Manchester Interdisciplinary Biocentre, University of Manchester + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100170 + name: JWS Online Model Repository at Manchester + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://jjj.mib.ac.uk/index.html + sampleId: curien + urlPattern: http://jjj.mib.ac.uk/models/{$id} + - deprecated: false + deprecationDate: + description: JWS Online Model Repository at Amsterdam + id: 416 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 415 + location: + countryCode: NL + countryName: Netherlands + name: University of Amsterdam + rorId: + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00100169 + name: JWS Online Model Repository at Amsterdam + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://jjj.bio.vu.nl/models/ + sampleId: curien + urlPattern: http://jjj.bio.vu.nl/models/{$id}/ + sampleId: curien + - created: 2019-06-11T14:16:08.429+0000 + deprecated: false + deprecationDate: + description: ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment. + id: 419 + mirId: MIR:00000131 + modified: 2019-06-11T14:16:08.429+0000 + name: ModelDB + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: modeldb + resources: + - deprecated: false + deprecationDate: + description: ModelDB at SenseLab + id: 420 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 310 + location: + countryCode: US + countryName: United States + name: Yale University School of Medicine + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100171 + name: ModelDB at SenseLab + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://senselab.med.yale.edu/ModelDB/ + sampleId: '45539' + urlPattern: http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model={$id} + sampleId: '45539' + - created: 2019-06-11T14:16:08.635+0000 + deprecated: false + deprecationDate: + description: "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. 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While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + id: 473 + mirId: MIR:00000151 + modified: 2019-06-11T14:16:13.424+0000 + name: GiardiaDB + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: giardiadb + resources: + - deprecated: false + deprecationDate: + description: GiardiaDB at EuPathDB + id: 474 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 467 + location: + countryCode: US + countryName: United States + name: Center for Tropical & Emerging Global Diseases, University of Georgia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100196 + name: GiardiaDB at EuPathDB + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://giardiadb.org/giardiadb/ + sampleId: GL50803_102438 + urlPattern: https://giardiadb.org/giardiadb/app/record/gene/{$id} + sampleId: GL50803_102438 + - created: 2019-06-11T14:16:13.630+0000 + deprecated: false + deprecationDate: + description: MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + id: 475 + mirId: MIR:00000152 + modified: 2019-06-11T14:16:13.630+0000 + name: MicrosporidiaDB + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: microsporidia + resources: + - deprecated: false + deprecationDate: + description: MicrosporidiaDB at EuPathDB + id: 476 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 467 + location: + countryCode: US + countryName: United States + name: Center for Tropical & Emerging Global Diseases, University of Georgia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100197 + name: MicrosporidiaDB at EuPathDB + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://microsporidiadb.org/micro/ + sampleId: ECU03_0820i + urlPattern: http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id={$id} + sampleId: ECU03_0820i + - created: 2019-06-11T14:16:13.817+0000 + deprecated: false + deprecationDate: + description: ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + id: 477 + mirId: MIR:00000153 + modified: 2019-06-11T14:16:13.817+0000 + name: ToxoDB + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: toxoplasma + resources: + - deprecated: false + deprecationDate: + description: ToxoDB at EuPathDB + id: 478 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 467 + location: + countryCode: US + countryName: United States + name: Center for Tropical & Emerging Global Diseases, University of Georgia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100198 + name: ToxoDB at EuPathDB + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://toxodb.org/toxo/ + sampleId: TGME49_053730 + urlPattern: http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id={$id} + sampleId: TGME49_053730 + - created: 2019-06-11T14:16:14.019+0000 + deprecated: false + deprecationDate: + description: TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + id: 479 + mirId: MIR:00000154 + modified: 2019-06-11T14:16:14.019+0000 + name: TrichDB + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: trichdb + resources: + - deprecated: false + deprecationDate: + description: TrichDB at EuPathDB + id: 480 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 467 + location: + countryCode: US + countryName: United States + name: Center for Tropical & Emerging Global Diseases, University of Georgia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100199 + name: TrichDB at EuPathDB + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://trichdb.org/trichdb/ + sampleId: TVAG_386080 + urlPattern: http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id={$id} + sampleId: TVAG_386080 + - created: 2019-06-11T14:16:14.213+0000 + deprecated: false + deprecationDate: + description: TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + id: 481 + mirId: MIR:00000155 + modified: 2019-06-11T14:16:14.213+0000 + name: TriTrypDB + namespaceEmbeddedInLui: false + pattern: ^\w+(\.)?\w+(\.)?\w+ + prefix: tritrypdb + resources: + - deprecated: false + deprecationDate: + description: TriTrypDB at EuPathDB + id: 483 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 482 + location: + countryCode: GB + countryName: United Kingdom + name: Wellcome Trust Sanger Institute, Hinxton + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100200 + name: TriTrypDB at EuPathDB + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://tritrypdb.org/tritrypdb/ + sampleId: Tb927.8.620 + urlPattern: http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id={$id} + sampleId: Tb927.8.620 + - created: 2019-06-11T14:16:14.437+0000 + deprecated: false + deprecationDate: + description: BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element. + id: 484 + mirId: MIR:00000156 + modified: 2019-06-11T14:16:14.437+0000 + name: BDGP insertion DB + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: bdgp.insertion + resources: + - deprecated: false + deprecationDate: + description: BDGP Gene Disruption Project + id: 486 + institution: + description: Baylor College of Medicine is a health sciences university that creates knowledge and applies science and discoveries to further education, healthcare and community service locally and globally. + homeUrl: https://www.bcm.edu + id: 485 + location: + countryCode: US + countryName: United States + name: Baylor College of Medicine + rorId: https://ror.org/02pttbw34 + location: + countryCode: US + countryName: United States + mirId: MIR:00100201 + name: BDGP Gene Disruption Project + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://flypush.imgen.bcm.tmc.edu/pscreen/ + sampleId: KG09531 + urlPattern: http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line={$id} + sampleId: KG09531 + - created: 2019-06-11T14:16:14.695+0000 + deprecated: false + deprecationDate: + description: BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications. + id: 487 + mirId: MIR:00000157 + modified: 2019-06-11T14:16:14.695+0000 + name: BeetleBase + namespaceEmbeddedInLui: false + pattern: ^TC\d+$ + prefix: beetlebase + resources: + - deprecated: false + deprecationDate: + description: BeetleBase at Kansas State University + id: 489 + institution: + description: Kansas State University is a comprehensive, research, land-grant institution serving students and the people of Kansas, the nation, and the world. + homeUrl: https://www.k-state.edu/ + id: 488 + location: + countryCode: US + countryName: United States + name: Kansas State University + rorId: https://ror.org/05p1j8758 + location: + countryCode: US + countryName: United States + mirId: MIR:00100202 + name: BeetleBase at Kansas State University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://beetlebase.org/ + sampleId: TC010103 + urlPattern: http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name={$id} + sampleId: TC010103 + - created: 2019-06-11T14:16:14.938+0000 + deprecated: false + deprecationDate: + description: The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information. + id: 490 + mirId: MIR:00000158 + modified: 2019-06-11T14:16:14.938+0000 + name: BOLD Taxonomy + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: bold.taxonomy + resources: + - deprecated: false + deprecationDate: + description: BOLD taxonomy browser + id: 492 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 491 + location: + countryCode: CA + countryName: Canada + name: Canadian Centre for DNA Barcoding, Biodiversity Institute of Ontario + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100203 + name: BOLD taxonomy browser + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.boldsystems.org/ + sampleId: '27267' + urlPattern: http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid={$id} + sampleId: '27267' + - created: 2019-06-11T14:16:15.166+0000 + deprecated: false + deprecationDate: + description: The dbEST contains sequence data and other information on "single-pass" cDNA sequences, or "Expressed Sequence Tags", from a number of organisms. + id: 493 + mirId: MIR:00000159 + modified: 2019-06-11T14:16:15.166+0000 + name: dbEST + namespaceEmbeddedInLui: false + pattern: ^([A-Z]+)?\d+(\.\d+)?$ + prefix: dbest + resources: + - deprecated: false + deprecationDate: + description: dbEST at NCBI + id: 494 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100204 + name: dbEST at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/nucest + sampleId: BP100000 + urlPattern: https://www.ncbi.nlm.nih.gov/nucest/{$id} + - deprecated: false + deprecationDate: + description: dbEST through European Nucleotide Archive (ENA) + id: 495 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100331 + name: dbEST through European Nucleotide Archive (ENA) + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/ena + sampleId: BP100000.1 + urlPattern: https://www.ebi.ac.uk/ena/data/view/{$id} + - deprecated: false + deprecationDate: + description: dbEST through DNA Data Bank of Japan (DDBJ) + id: 496 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 121 + location: + countryCode: JP + countryName: Japan + name: DNA Data Bank of Japan, Mishima, Shizuoka + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100651 + name: dbEST through DNA Data Bank of Japan (DDBJ) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.ddbj.nig.ac.jp/ + sampleId: BP100000 + urlPattern: http://getentry.ddbj.nig.ac.jp/getentry/na/{$id} + sampleId: BP100000 + - created: 2019-06-11T14:16:15.607+0000 + deprecated: false + deprecationDate: + description: The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities. + id: 497 + mirId: MIR:00000160 + modified: 2019-06-11T14:16:15.607+0000 + name: dbProbe + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: dbprobe + resources: + - deprecated: false + deprecationDate: + description: dbProbe at NCBI + id: 498 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100205 + name: dbProbe at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe + sampleId: '1000000' + urlPattern: https://www.ncbi.nlm.nih.gov/probe/?term={$id} + sampleId: '1000000' + - created: 2019-06-11T14:16:15.831+0000 + deprecated: false + deprecationDate: + description: The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms. + id: 499 + mirId: MIR:00000161 + modified: 2019-06-11T14:16:15.831+0000 + name: dbSNP + namespaceEmbeddedInLui: false + pattern: ^rs\d+$ + prefix: dbsnp + resources: + - deprecated: false + deprecationDate: + description: dbSNP at NCBI + id: 500 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100206 + name: dbSNP at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/snp/ + sampleId: rs121909098 + urlPattern: https://www.ncbi.nlm.nih.gov/snp/{$id} + - deprecated: false + deprecationDate: + description: SNP2TFBS + id: 502 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100927 + name: SNP2TFBS + official: false + providerCode: sib + resourceHomeUrl: https://ccg.epfl.ch/snp2tfbs/ + sampleId: rs11603840 + urlPattern: https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid={$id} + sampleId: rs121909098 + - created: 2019-06-11T14:16:16.225+0000 + deprecated: false + deprecationDate: + description: UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences. + id: 503 + mirId: MIR:00000162 + modified: 2019-06-11T14:16:16.225+0000 + name: UniSTS + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: unists + resources: + - deprecated: false + deprecationDate: + description: UniSTS at NCBI + id: 504 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100207 + name: UniSTS at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/sites/entrez?db=unists + sampleId: '456789' + urlPattern: https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid={$id} + sampleId: '456789' + - created: 2019-06-11T14:16:16.429+0000 + deprecated: false + deprecationDate: + description: The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites. + id: 505 + mirId: MIR:00000163 + modified: 2019-06-11T14:16:16.429+0000 + name: EcoGene + namespaceEmbeddedInLui: false + pattern: ^EG\d+$ + prefix: ecogene + resources: + - deprecated: false + deprecationDate: + description: EcoGene at University of Miami + id: 507 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 506 + location: + countryCode: US + countryName: United States + name: Miller School of Medicine, University of Miami + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100208 + name: EcoGene at University of Miami + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ecogene.org/ + sampleId: EG10173 + urlPattern: http://www.ecogene.org/gene/{$id} + sampleId: EG10173 + - created: 2019-06-11T14:16:45.049+0000 + deprecated: false + deprecationDate: + description: The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI). + id: 837 + mirId: MIR:00000285 + modified: 2019-06-11T14:16:45.049+0000 + name: BDGP EST + namespaceEmbeddedInLui: false + pattern: ^\w+(\.)?(\d+)?$ + prefix: bdgp.est + resources: + - deprecated: false + deprecationDate: + description: BDGP EST at NCBI + id: 838 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100366 + name: BDGP EST at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/dbEST/index.html + sampleId: EY223054.1 + urlPattern: https://www.ncbi.nlm.nih.gov/nucest/{$id} + sampleId: EY223054.1 + - created: 2019-06-11T14:16:16.652+0000 + deprecated: false + deprecationDate: + description: GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'. + id: 508 + mirId: MIR:00000164 + modified: 2019-06-11T14:16:16.652+0000 + name: GABI + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: gabi + resources: + - deprecated: false + deprecationDate: + description: GABI at Max Planck + id: 510 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 509 + location: + countryCode: DE + countryName: Germany + name: Max Planck Institute of Molecular Plant Physiology, Berlin + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100210 + name: GABI at Max Planck + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.gabipd.org/ + sampleId: '2679240' + urlPattern: http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId={$id}&Mode=ShowBioObject + sampleId: '2679240' + - created: 2019-06-11T14:16:16.885+0000 + deprecated: false + deprecationDate: + description: A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies. + id: 511 + mirId: MIR:00000165 + modified: 2019-06-11T14:16:16.885+0000 + name: GreenGenes + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: greengenes + resources: + - deprecated: false + deprecationDate: + description: GreenGenes at Lawrence Berkeley + id: 513 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 512 + location: + countryCode: US + countryName: United States + name: Center for Environmental Biotechnology, Lawrence Berkeley National Laboratory, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100211 + name: GreenGenes at Lawrence Berkeley + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://greengenes.lbl.gov/ + sampleId: '100000' + urlPattern: http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id={$id} + sampleId: '100000' + - created: 2019-06-11T14:16:17.150+0000 + deprecated: false + deprecationDate: + description: GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact. + id: 514 + mirId: MIR:00000166 + modified: 2019-06-11T14:16:17.150+0000 + name: GRIN Plant Taxonomy + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: grin.taxonomy + resources: + - deprecated: false + deprecationDate: + description: GRIN at Maryland + id: 516 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 515 + location: + countryCode: US + countryName: United States + name: National Germplasm Resources Laboratory, Beltsville, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100212 + name: GRIN at Maryland + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl?language=en + sampleId: '19333' + urlPattern: http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?{$id} + sampleId: '19333' + - created: 2019-06-11T14:16:17.382+0000 + deprecated: false + deprecationDate: + description: H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view. + id: 517 + mirId: MIR:00000167 + modified: 2019-06-11T14:16:17.382+0000 + name: H-InvDb Locus + namespaceEmbeddedInLui: false + pattern: ^HIX\d{7}(\.\d+)?$ + prefix: hinv.locus + resources: + - deprecated: false + deprecationDate: + description: H-Invitational Locus View at BIRC + id: 519 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 518 + location: + countryCode: JP + countryName: Japan + name: BIRC, Tokyo + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100213 + name: H-Invitational Locus View at BIRC + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://h-invitational.jp/hinv/ahg-db/index.jsp + sampleId: HIX0004394 + urlPattern: http://h-invitational.jp/hinv/spsoup/locus_view?hix_id={$id} + sampleId: HIX0004394 + - created: 2019-06-11T14:16:17.622+0000 + deprecated: false + deprecationDate: + description: H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view. + id: 520 + mirId: MIR:00000168 + modified: 2019-06-11T14:16:17.622+0000 + name: H-InvDb Transcript + namespaceEmbeddedInLui: false + pattern: ^HIT\d{9}(\.\d+)?$ + prefix: hinv.transcript + resources: + - deprecated: false + deprecationDate: + description: H-Invitational Transcript View at BIRC + id: 521 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 518 + location: + countryCode: JP + countryName: Japan + name: BIRC, Tokyo + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100214 + name: H-Invitational Transcript View at BIRC + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://h-invitational.jp/hinv/ahg-db/index.jsp + sampleId: HIT000195363 + urlPattern: http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id={$id} + sampleId: HIT000195363 + - created: 2019-06-11T14:16:17.817+0000 + deprecated: false + deprecationDate: + description: H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view. + id: 522 + mirId: MIR:00000169 + modified: 2019-06-11T14:16:17.817+0000 + name: H-InvDb Protein + namespaceEmbeddedInLui: false + pattern: ^HIP\d{9}(\.\d+)?$ + prefix: hinv.protein + resources: + - deprecated: false + deprecationDate: + description: H-Invitational Protein View at BIRC + id: 523 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 518 + location: + countryCode: JP + countryName: Japan + name: BIRC, Tokyo + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100215 + name: H-Invitational Protein View at BIRC + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://h-invitational.jp/hinv/ahg-db/index.jsp + sampleId: HIP000030660 + urlPattern: http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id={$id} + sampleId: HIP000030660 + - created: 2019-06-11T14:16:18.019+0000 + deprecated: false + deprecationDate: + description: The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information. + id: 524 + mirId: MIR:00000170 + modified: 2019-06-11T14:16:18.019+0000 + name: HOMD Sequence Metainformation + namespaceEmbeddedInLui: false + pattern: ^SEQF\d+$ + prefix: homd.seq + resources: + - deprecated: false + deprecationDate: + description: HOMD sequence metainformation at The Forsyth Institute + id: 526 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 525 + location: + countryCode: US + countryName: United States + name: The Forsyth Institute, Boston + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100216 + name: HOMD sequence metainformation at The Forsyth Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.homd.org/index.php + sampleId: SEQF1003 + urlPattern: http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid={$id} + sampleId: SEQF1003 + - created: 2019-06-11T14:16:18.268+0000 + deprecated: false + deprecationDate: + description: The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information. + id: 527 + mirId: MIR:00000171 + modified: 2019-06-11T14:16:18.268+0000 + name: HOMD Taxonomy + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: homd.taxon + resources: + - deprecated: false + deprecationDate: + description: HOMD taxon information at The Forsyth Institute + id: 528 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 525 + location: + countryCode: US + countryName: United States + name: The Forsyth Institute, Boston + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100217 + name: HOMD taxon information at The Forsyth Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.homd.org/index.php + sampleId: '811' + urlPattern: http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid={$id}&view=dynamic + sampleId: '811' + - created: 2019-06-11T14:16:18.461+0000 + deprecated: false + deprecationDate: + description: Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s). + id: 529 + mirId: MIR:00000172 + modified: 2019-06-11T14:16:18.461+0000 + name: IRD Segment Sequence + namespaceEmbeddedInLui: false + pattern: ^\w+(\_)?\d+(\.\d+)?$ + prefix: ird.segment + resources: + - deprecated: false + deprecationDate: + description: IRD at BioHealthBase + id: 531 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 530 + location: + countryCode: US + countryName: United States + name: Southwestern Medical Center, University of Texas, Dallas + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100218 + name: IRD at BioHealthBase + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.fludb.org/ + sampleId: CY077097 + urlPattern: http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession={$id} + sampleId: CY077097 + - created: 2019-06-11T14:16:18.690+0000 + deprecated: false + deprecationDate: + description: ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available. + id: 532 + mirId: MIR:00000173 + modified: 2019-06-11T14:16:18.690+0000 + name: ISFinder + namespaceEmbeddedInLui: false + pattern: ^IS\w+(\-\d)?$ + prefix: isfinder + resources: + - deprecated: false + deprecationDate: + description: IS Finder at CNRS + id: 534 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 533 + location: + countryCode: FR + countryName: France + name: Laboratoire de Microbiologie et GĆ©nĆ©tique MolĆ©culaires, CNRS, Toulouse + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100219 + name: IS Finder at CNRS + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www-is.biotoul.fr/i + sampleId: ISA1083-2 + urlPattern: https://www-is.biotoul.fr/scripts/ficheIS.php?name={$id} + sampleId: ISA1083-2 + - created: 2019-06-11T14:16:18.921+0000 + deprecated: false + deprecationDate: + description: The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2. + id: 535 + mirId: MIR:00000174 + modified: 2019-06-11T14:16:18.921+0000 + name: Japan Collection of Microorganisms + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: jcm + resources: + - deprecated: false + deprecationDate: + description: JCM at RIKEN BioResource Center + id: 537 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 536 + location: + countryCode: JP + countryName: Japan + name: RIKEN BioResource Center, Ibaraki + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100220 + name: JCM at RIKEN BioResource Center + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.jcm.riken.go.jp/ + sampleId: '17254' + urlPattern: http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM={$id} + sampleId: '17254' + - created: 2019-06-11T14:16:19.173+0000 + deprecated: false + deprecationDate: + description: The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information. + id: 538 + mirId: MIR:00000175 + modified: 2019-06-11T14:16:19.173+0000 + name: Integrated Microbial Genomes Taxon + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: img.taxon + resources: + - deprecated: false + deprecationDate: + description: Integrated Microbial Genomes Taxon at Lawrence Berkeley National Laboratory + id: 540 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 539 + location: + countryCode: US + countryName: United States + name: Lawrence Berkeley National Laboratory, Berkeley + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100221 + name: Integrated Microbial Genomes Taxon at Lawrence Berkeley National Laboratory + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://img.jgi.doe.gov/ + sampleId: '648028003' + urlPattern: http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid={$id} + sampleId: '648028003' + - created: 2019-06-11T14:16:19.420+0000 + deprecated: false + deprecationDate: + description: The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information. + id: 541 + mirId: MIR:00000176 + modified: 2019-06-11T14:16:19.420+0000 + name: Integrated Microbial Genomes Gene + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: img.gene + resources: + - deprecated: false + deprecationDate: + description: Integrated Microbial Genomes Taxon at Lawrence Berkeley National Laboratory + id: 542 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 539 + location: + countryCode: US + countryName: United States + name: Lawrence Berkeley National Laboratory, Berkeley + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100222 + name: Integrated Microbial Genomes Taxon at Lawrence Berkeley National Laboratory + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://img.jgi.doe.gov/ + sampleId: '638309541' + urlPattern: http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid={$id} + sampleId: '638309541' + - created: 2019-06-11T14:16:19.610+0000 + deprecated: false + deprecationDate: + description: MaizeGDB is the maize research community's central repository for genetics and genomics information. + id: 543 + mirId: MIR:00000177 + modified: 2019-06-11T14:16:19.610+0000 + name: MaizeGDB Locus + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: maizegdb.locus + resources: + - deprecated: false + deprecationDate: + description: MaizeGDB at Missouri + id: 545 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 544 + location: + countryCode: US + countryName: United States + name: Division of Plant Sciences, Missouri + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100223 + name: MaizeGDB at Missouri + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.maizegdb.org/ + sampleId: '25011' + urlPattern: http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id={$id} + sampleId: '25011' + - created: 2019-06-11T14:16:19.843+0000 + deprecated: false + deprecationDate: + description: MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations. + id: 546 + mirId: MIR:00000178 + modified: 2019-06-11T14:16:19.843+0000 + name: MycoBank + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: mycobank + resources: + - deprecated: false + deprecationDate: + description: MycoBank at Fungal Biodiversity Centre + id: 548 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 547 + location: + countryCode: NL + countryName: Netherlands + name: CBS-KNAW Fungal Biodiversity Centre, Utrecht + rorId: + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00100224 + name: MycoBank at Fungal Biodiversity Centre + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.mycobank.org/ + sampleId: '349124' + urlPattern: http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_={$id} + sampleId: '349124' + - created: 2019-06-11T14:16:20.103+0000 + deprecated: false + deprecationDate: + description: NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information. + id: 549 + mirId: MIR:00000179 + modified: 2019-06-11T14:16:20.103+0000 + name: NITE Biological Research Center Catalogue + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: nbrc + resources: + - deprecated: false + deprecationDate: + description: NBRC Catalogue at National Institute of Technology Evaluation + id: 551 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 550 + location: + countryCode: JP + countryName: Japan + name: National Institute of Technology Evaluation, Tokyo + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100225 + name: NBRC Catalogue at National Institute of Technology Evaluation + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.nbrc.nite.go.jp/e/index.html + sampleId: '00001234' + urlPattern: http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT={$id} + sampleId: '00001234' + - created: 2019-06-11T14:16:20.362+0000 + deprecated: false + deprecationDate: + description: The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation. + id: 552 + mirId: MIR:00000180 + modified: 2019-06-11T14:16:20.362+0000 + name: Pseudomonas Genome Database + namespaceEmbeddedInLui: false + pattern: ^P\w+$ + prefix: pseudomonas + resources: + - deprecated: false + deprecationDate: + description: Pseudomonas Genome Database at Simon Fraser University + id: 554 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 553 + location: + countryCode: CA + countryName: Canada + name: Simon Fraser University, British Columbia + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100226 + name: Pseudomonas Genome Database at Simon Fraser University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.pseudomonas.com/ + sampleId: PSEEN0001 + urlPattern: http://www.pseudomonas.com/feature/show/?locus_tag={$id} + sampleId: PSEEN0001 + - created: 2019-06-11T14:16:20.589+0000 + deprecated: false + deprecationDate: + description: Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene. + id: 555 + mirId: MIR:00000181 + modified: 2019-06-11T14:16:20.589+0000 + name: Gramene protein + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: gramene.protein + resources: + - deprecated: false + deprecationDate: + description: Gramene Protein at Cold Spring Harbor + id: 557 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 556 + location: + countryCode: US + countryName: United States + name: Cold Spring Harbor Laboratory, New York + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100227 + name: Gramene Protein at Cold Spring Harbor + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.gramene.org/ + sampleId: '78073' + urlPattern: http://www.gramene.org/db/protein/protein_search?protein_id={$id} + sampleId: '78073' + - created: 2019-06-11T14:16:20.812+0000 + deprecated: false + deprecationDate: + description: Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene. + id: 558 + mirId: MIR:00000182 + modified: 2019-06-11T14:16:20.812+0000 + name: Gramene genes + namespaceEmbeddedInLui: false + pattern: ^GR\:\d+$ + prefix: gramene.gene + resources: + - deprecated: false + deprecationDate: + description: Gramene Genes at Cold Spring Harbor + id: 559 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 556 + location: + countryCode: US + countryName: United States + name: Cold Spring Harbor Laboratory, New York + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100228 + name: Gramene Genes at Cold Spring Harbor + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.gramene.org/ + sampleId: GR:0080039 + urlPattern: http://www.gramene.org/db/genes/search_gene?acc={$id} + sampleId: GR:0080039 + - created: 2019-06-11T14:16:21.008+0000 + deprecated: false + deprecationDate: + description: Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene. + id: 560 + mirId: MIR:00000183 + modified: 2019-06-11T14:16:21.008+0000 + name: Gramene Taxonomy + namespaceEmbeddedInLui: false + pattern: ^GR\_tax\:\d+$ + prefix: gramene.taxonomy + resources: + - deprecated: false + deprecationDate: + description: Gramene Taxonomy at Cold Spring Harbor + id: 561 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 556 + location: + countryCode: US + countryName: United States + name: Cold Spring Harbor Laboratory, New York + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100229 + name: Gramene Taxonomy at Cold Spring Harbor + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.gramene.org/ + sampleId: GR_tax:013681 + urlPattern: http://www.gramene.org/db/ontology/search?id={$id} + sampleId: GR_tax:013681 + - created: 2019-06-11T14:16:21.219+0000 + deprecated: false + deprecationDate: + description: Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene. + id: 562 + mirId: MIR:00000184 + modified: 2019-06-11T14:16:21.219+0000 + name: Gramene QTL + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: gramene.qtl + resources: + - deprecated: false + deprecationDate: + description: Gramene Quantitative Trait Loci at Cold Spring Harbor + id: 563 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 556 + location: + countryCode: US + countryName: United States + name: Cold Spring Harbor Laboratory, New York + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100230 + name: Gramene Quantitative Trait Loci at Cold Spring Harbor + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.gramene.org/ + sampleId: CQG5 + urlPattern: http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id={$id} + sampleId: CQG5 + - created: 2019-06-11T14:16:21.425+0000 + deprecated: false + deprecationDate: + description: The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant. + id: 564 + mirId: MIR:00000185 + modified: 2019-06-11T14:16:21.425+0000 + name: Sol Genomics Network + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: sgn + resources: + - deprecated: false + deprecationDate: + description: Sol Genomics Network at Boyce Thompson Institute for Plant Research + id: 566 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 565 + location: + countryCode: US + countryName: United States + name: Boyce Thompson Institute for Plant Research, New York + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100231 + name: Sol Genomics Network at Boyce Thompson Institute for Plant Research + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://solgenomics.net/ + sampleId: '0001' + urlPattern: http://solgenomics.net/phenome/locus_display.pl?locus_id={$id} + sampleId: '0001' + - created: 2019-06-11T14:16:21.882+0000 + deprecated: false + deprecationDate: + description: BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and ProtĆ©gĆ© frames. BioPortal functionality includes the ability to browse, search and visualize ontologies. + id: 570 + mirId: MIR:00000187 + modified: 2019-06-11T14:16:21.882+0000 + name: BioPortal + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: bioportal + resources: + - deprecated: false + deprecationDate: + description: BioPortal at National Center for Biomedical Ontology + id: 572 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 571 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford University + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100244 + name: BioPortal at National Center for Biomedical Ontology + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ + sampleId: '1046' + urlPattern: http://bioportal.bioontology.org/ontologies/{$id} + sampleId: '1046' + - created: 2019-06-11T14:16:22.127+0000 + deprecated: false + deprecationDate: + description: MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases. + id: 573 + mirId: MIR:00000188 + modified: 2019-06-11T14:16:22.127+0000 + name: MIRIAM Registry resource + namespaceEmbeddedInLui: false + pattern: ^MIR:001\d{5}$ + prefix: miriam.resource + resources: + - deprecated: false + deprecationDate: + description: MIRIAM Registry (resources) + id: 574 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100245 + name: MIRIAM Registry (resources) + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/miriam/ + sampleId: MIR:00100005 + urlPattern: https://www.ebi.ac.uk/miriam/main/resources/{$id} + sampleId: MIR:00100005 + - created: 2019-06-11T14:16:22.318+0000 + deprecated: false + deprecationDate: + description: 'EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).' + id: 575 + mirId: MIR:00000189 + modified: 2019-06-11T14:16:22.318+0000 + name: EDAM Ontology + namespaceEmbeddedInLui: false + pattern: ^(data|topic|operation|format)\_\d{4}$ + prefix: edam + resources: + - deprecated: false + deprecationDate: + description: EDAM through BioPortal + id: 576 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100536 + name: EDAM through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/EDAM + sampleId: data_1664 + urlPattern: http://purl.bioontology.org/ontology/EDAM/{$id} + - deprecated: false + deprecationDate: + description: EDAM through OLS + id: 577 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100762 + name: EDAM through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/edam + sampleId: data_1664 + urlPattern: https://www.ebi.ac.uk/ols/ontologies/edam/terms?short_form={$id} + sampleId: data_1664 + - created: 2019-06-11T14:16:22.644+0000 + deprecated: false + deprecationDate: + description: The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques. + id: 578 + mirId: MIR:00000190 + modified: 2019-06-11T14:16:22.644+0000 + name: Protein Model Database + namespaceEmbeddedInLui: false + pattern: ^PM\d{7} + prefix: pmdb + resources: + - deprecated: false + deprecationDate: + description: Protein Model Database at University of Rome + id: 580 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 579 + location: + countryCode: IT + countryName: Italy + name: CASPUR and Biocomputing group, Department of Biochemical Sciences, University of Rome, Rome + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00100247 + name: Protein Model Database at University of Rome + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://bioinformatics.cineca.it/PMDB/ + sampleId: PM0012345 + urlPattern: https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch={$id} + sampleId: PM0012345 + - created: 2019-06-11T14:16:22.902+0000 + deprecated: false + deprecationDate: + description: ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information. + id: 581 + mirId: MIR:00000193 + modified: 2019-06-11T14:16:22.902+0000 + name: ArachnoServer + namespaceEmbeddedInLui: false + pattern: ^AS\d{6}$ + prefix: arachnoserver + resources: + - deprecated: false + deprecationDate: + description: ArachnoServer at Brisbane + id: 583 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 582 + location: + countryCode: AU + countryName: Australia + name: Institute for Molecular Bioscience, The University of Queensland, Brisbane + rorId: + location: + countryCode: AU + countryName: Australia + mirId: MIR:00100250 + name: ArachnoServer at Brisbane + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.arachnoserver.org/ + sampleId: AS000060 + urlPattern: http://www.arachnoserver.org/toxincard.html?id={$id} + sampleId: AS000060 + - created: 2019-06-11T14:16:23.132+0000 + deprecated: false + deprecationDate: + description: BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms. + id: 584 + mirId: MIR:00000194 + modified: 2019-06-11T14:16:23.132+0000 + name: BioCyc + namespaceEmbeddedInLui: false + pattern: ^[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$ + prefix: biocyc + resources: + - deprecated: false + deprecationDate: + description: BioCyc at SRI International + id: 586 + institution: + description: SRI is an independent, nonprofit research center that works with clients to take the most advanced R&D from the laboratory to the marketplace. + homeUrl: https://www.sri.com/ + id: 1692 + location: + countryCode: US + countryName: United States + name: SRI International + rorId: https://ror.org/05s570m15 + location: + countryCode: US + countryName: United States + mirId: MIR:00100251 + name: BioCyc at SRI International + official: false + providerCode: sri + resourceHomeUrl: http://biocyc.org + sampleId: ECOLI:CYT-D-UBIOX-CPLX + urlPattern: http://biocyc.org/getid?id={$id} + sampleId: ECOLI:CYT-D-UBIOX-CPLX + - created: 2019-06-11T14:16:23.358+0000 + deprecated: false + deprecationDate: + description: The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features. + id: 587 + mirId: MIR:00000195 + modified: 2019-06-11T14:16:23.358+0000 + name: CAZy + namespaceEmbeddedInLui: false + pattern: ^(GT|GH|PL|CE|CBM)\d+(\_\d+)?$ + prefix: cazy + resources: + - deprecated: false + deprecationDate: + description: CAZy at CNRS + id: 589 + institution: + description: The Architecture et Fonction des MacromolĆ©cules Biologiques (AFMB) laboratory, overseen by the CNRS and AMU, is a center of structural biology localized on the Luminy campus in the South of Marseilles, France, and in partnership with INRA under contract. + homeUrl: http://www.afmb.univ-mrs.fr + id: 588 + location: + countryCode: FR + countryName: France + name: Architecture et Fonction des MacromolĆ©cules Biologiques + rorId: https://ror.org/04jm8zw14 + location: + countryCode: FR + countryName: France + mirId: MIR:00100252 + name: CAZy at CNRS + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.cazy.org/ + sampleId: GT10 + urlPattern: http://www.cazy.org/{$id}.html + sampleId: GT10 + - created: 2019-06-11T14:16:23.594+0000 + deprecated: false + deprecationDate: + description: The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups. + id: 590 + mirId: MIR:00000196 + modified: 2019-06-11T14:16:23.594+0000 + name: GOA + namespaceEmbeddedInLui: false + pattern: ^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$ + prefix: goa + resources: + - deprecated: false + deprecationDate: + description: GOA through QuickGO + id: 591 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100253 + name: GOA through QuickGO + official: false + providerCode: quickgo + resourceHomeUrl: https://www.ebi.ac.uk/GOA/ + sampleId: P12345 + urlPattern: https://www.ebi.ac.uk/QuickGO/GProtein?ac={$id} + sampleId: P12345 + - created: 2019-06-11T14:16:23.782+0000 + deprecated: false + deprecationDate: + description: The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data. + id: 592 + mirId: MIR:00000197 + modified: 2019-06-11T14:16:23.782+0000 + name: PaleoDB + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: paleodb + resources: + - deprecated: false + deprecationDate: + description: PaleoDB at Macquarie University + id: 594 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 593 + location: + countryCode: AU + countryName: Australia + name: Macquarie University, Sydney + rorId: + location: + countryCode: AU + countryName: Australia + mirId: MIR:00100254 + name: PaleoDB at Macquarie University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://paleodb.org/ + sampleId: '83088' + urlPattern: http://fossilworks.org/?a=taxonInfo&taxon_no={$id} + sampleId: '83088' + - created: 2019-06-11T14:16:24.045+0000 + deprecated: false + deprecationDate: + description: Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record. + id: 595 + mirId: MIR:00000198 + modified: 2019-06-11T14:16:24.045+0000 + name: Compulyeast + namespaceEmbeddedInLui: false + pattern: ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ + prefix: compulyeast + resources: + - deprecated: false + deprecationDate: + description: Compluyeast database at Universidad Complutense Madrid + id: 597 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 596 + location: + countryCode: ES + countryName: Spain + name: Department Microbiology II, Universidad Complutense Madrid, Madrid + rorId: + location: + countryCode: ES + countryName: Spain + mirId: MIR:00100257 + name: Compluyeast database at Universidad Complutense Madrid + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://compluyeast2dpage.dacya.ucm.es/ + sampleId: O08709 + urlPattern: http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac={$id} + sampleId: O08709 + - created: 2019-06-11T14:16:24.496+0000 + deprecated: false + deprecationDate: + description: EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products. + id: 601 + mirId: MIR:00000200 + modified: 2019-06-11T14:16:24.496+0000 + name: EchoBASE + namespaceEmbeddedInLui: false + pattern: ^EB\d+$ + prefix: echobase + resources: + - deprecated: false + deprecationDate: + description: EchoBASE at the University of York + id: 603 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 602 + location: + countryCode: GB + countryName: United Kingdom + name: Department of Biology (Area 10), University of York, York + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100259 + name: EchoBASE at the University of York + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.york.ac.uk/ + sampleId: EB0170 + urlPattern: http://www.york.ac.uk/res/thomas/Gene.cfm?recordID={$id} + sampleId: EB0170 + - created: 2019-06-11T14:16:24.278+0000 + deprecated: false + deprecationDate: + description: DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature. + id: 598 + mirId: MIR:00000199 + modified: 2021-02-17T17:15:29.025+0000 + name: DisProt + namespaceEmbeddedInLui: false + pattern: ^DP\d{5}$ + prefix: disprot + resources: + - deprecated: false + deprecationDate: + description: DisProt at University of Padua + id: 600 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1769 + location: + countryCode: IT + countryName: Italy + name: University of Padua + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00100258 + name: DisProt at University of Padua + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://disprot.org/ + sampleId: DP00003 + urlPattern: https://disprot.org/{$id} + sampleId: DP00003 + - created: 2019-06-11T14:16:24.719+0000 + deprecated: false + deprecationDate: + description: 'eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories).' + id: 604 + mirId: MIR:00000201 + modified: 2019-06-11T14:16:24.719+0000 + name: eggNOG + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: eggnog + resources: + - deprecated: false + deprecationDate: + description: eggNOG Version 3 at European Molecular Biology Laboratory + id: 606 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 605 + location: + countryCode: DE + countryName: Germany + name: European Molecular Biology Laboratory, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100260 + name: eggNOG Version 3 at European Molecular Biology Laboratory + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://eggnog.embl.de/version_3.0/ + sampleId: veNOG12876 + urlPattern: http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0={$id} + sampleId: veNOG12876 + - created: 2019-06-11T14:16:24.944+0000 + deprecated: false + deprecationDate: + description: Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes. + id: 607 + mirId: MIR:00000202 + modified: 2019-06-11T14:16:24.944+0000 + name: Ensembl Bacteria + namespaceEmbeddedInLui: false + pattern: ^((EB\w+)|([A-Z0-9]+\_[A-Z0-9]+))$ + prefix: ensembl.bacteria + resources: + - deprecated: false + deprecationDate: + description: Ensembl Bacteria at EBI + id: 608 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100261 + name: Ensembl Bacteria at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://bacteria.ensembl.org/ + sampleId: MU9_3181 + urlPattern: https://bacteria.ensembl.org/id/{$id} + sampleId: MU9_3181 + - created: 2019-06-11T14:16:25.183+0000 + deprecated: false + deprecationDate: + description: Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes. + id: 609 + mirId: MIR:00000203 + modified: 2019-06-11T14:16:25.183+0000 + name: Ensembl Protists + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: ensembl.protist + resources: + - deprecated: false + deprecationDate: + description: Ensembl Protists at EBI + id: 610 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100262 + name: Ensembl Protists at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://protists.ensembl.org + sampleId: PF3D7_1328700 + urlPattern: https://protists.ensembl.org/id/{$id} + sampleId: PF3D7_1328700 + - created: 2019-06-11T14:16:25.396+0000 + deprecated: false + deprecationDate: + description: Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes. + id: 611 + mirId: MIR:00000204 + modified: 2019-06-11T14:16:25.396+0000 + name: Ensembl Metazoa + namespaceEmbeddedInLui: false + pattern: ^\w+(\.)?\d+$ + prefix: ensembl.metazoa + resources: + - deprecated: false + deprecationDate: + description: Enzembl Metazoa at EBI + id: 612 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100263 + name: Enzembl Metazoa at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://metazoa.ensembl.org/ + sampleId: FBtr0084214 + urlPattern: https://metazoa.ensembl.org/id/{$id} + sampleId: FBtr0084214 + - created: 2019-06-11T14:16:25.597+0000 + deprecated: false + deprecationDate: + description: Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes. + id: 613 + mirId: MIR:00000205 + modified: 2019-06-11T14:16:25.597+0000 + name: Ensembl Plants + namespaceEmbeddedInLui: false + pattern: ^\w+(\.\d+)?(\.\d+)?$ + prefix: ensembl.plant + resources: + - deprecated: false + deprecationDate: + description: Enzembl Plants at EBI + id: 614 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100264 + name: Enzembl Plants at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://plants.ensembl.org/ + sampleId: AT1G73965 + urlPattern: https://plants.ensembl.org/id/{$id} + sampleId: AT1G73965 + - created: 2019-06-11T14:16:25.804+0000 + deprecated: false + deprecationDate: + description: Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes. + id: 615 + mirId: MIR:00000206 + modified: 2019-06-11T14:16:25.804+0000 + name: Ensembl Fungi + namespaceEmbeddedInLui: false + pattern: ^[A-Z-a-z0-9]+$ + prefix: ensembl.fungi + resources: + - deprecated: false + deprecationDate: + description: Enzembl Fungi at EBI + id: 616 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100265 + name: Enzembl Fungi at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://fungi.ensembl.org/ + sampleId: CADAFLAT00006211 + urlPattern: https://fungi.ensembl.org/id/{$id} + sampleId: CADAFLAT00006211 + - created: 2019-06-11T14:16:26.018+0000 + deprecated: false + deprecationDate: + description: the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses. + id: 617 + mirId: MIR:00000207 + modified: 2019-06-11T14:16:26.018+0000 + name: HCVDB + namespaceEmbeddedInLui: false + pattern: ^M\d{5}$ + prefix: hcvdb + resources: + - deprecated: false + deprecationDate: + description: HCVDB at CNRS + id: 619 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 618 + location: + countryCode: FR + countryName: France + name: Institut de Biologie et Chimie des ProtĆ©ines, CNRS, University of Lyon , Lyon-Gerland + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100266 + name: HCVDB at CNRS + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://euhcvdb.ibcp.fr/euHCVdb/ + sampleId: M58335 + urlPattern: https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC={$id} + sampleId: M58335 + - created: 2019-06-11T14:16:26.301+0000 + deprecated: false + deprecationDate: + description: GenAtlas is a database containing information on human genes, markers and phenotypes. + id: 620 + mirId: MIR:00000208 + modified: 2019-06-11T14:16:26.301+0000 + name: Genatlas + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: genatlas + resources: + - deprecated: false + deprecationDate: + description: Genatlas at Paris Descartes University + id: 622 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 621 + location: + countryCode: FR + countryName: France + name: Paris Descartes University, Paris + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100267 + name: Genatlas at Paris Descartes University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://genatlas.medecine.univ-paris5.fr/ + sampleId: HBB + urlPattern: http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol={$id} + sampleId: HBB + - created: 2019-06-11T14:16:26.635+0000 + deprecated: false + deprecationDate: + description: The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification. + id: 623 + mirId: MIR:00000209 + modified: 2019-06-11T14:16:26.635+0000 + name: CATH superfamily + namespaceEmbeddedInLui: false + pattern: ^\d+(\.\d+(\.\d+(\.\d+)?)?)?$ + prefix: cath.superfamily + resources: + - deprecated: false + deprecationDate: + description: CATH superfamily at UCL + id: 625 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 624 + location: + countryCode: GB + countryName: United Kingdom + name: Institute of Structural and Molecular Biology, University College London + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100268 + name: CATH superfamily at UCL + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.cathdb.info/ + sampleId: 1.10.10.200 + urlPattern: http://www.cathdb.info/cathnode/{$id} + sampleId: 1.10.10.200 + - created: 2019-06-11T14:16:26.899+0000 + deprecated: false + deprecationDate: + description: The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains. + id: 626 + mirId: MIR:00000210 + modified: 2019-06-11T14:16:26.899+0000 + name: CATH domain + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: cath.domain + resources: + - deprecated: false + deprecationDate: + description: CATH domain at UCL + id: 627 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 624 + location: + countryCode: GB + countryName: United Kingdom + name: Institute of Structural and Molecular Biology, University College London + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100269 + name: CATH domain at UCL + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.cathdb.info/ + sampleId: 1cukA01 + urlPattern: http://www.cathdb.info/domain/{$id} + sampleId: 1cukA01 + - created: 2019-06-11T14:16:27.145+0000 + deprecated: false + deprecationDate: + description: GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products. + id: 628 + mirId: MIR:00000211 + modified: 2019-06-11T14:16:27.145+0000 + name: GeneFarm + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: genefarm + resources: + - deprecated: false + deprecationDate: + description: GeneFarm at UnitĆ© de Recherche en GĆ©nomique VĆ©gĆ©tale + id: 630 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 629 + location: + countryCode: FR + countryName: France + name: UnitĆ© de Recherche en GĆ©nomique VĆ©gĆ©tale, Evry + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100270 + name: GeneFarm at UnitĆ© de Recherche en GĆ©nomique VĆ©gĆ©tale + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://urgi.versailles.inra.fr/Genefarm/ + sampleId: '4892' + urlPattern: https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID={$id} + sampleId: '4892' + - created: 2019-06-11T14:16:27.419+0000 + deprecated: false + deprecationDate: + description: The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models. + id: 631 + mirId: MIR:00000212 + modified: 2019-06-11T14:16:27.419+0000 + name: GPCRDB + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: gpcrdb + resources: + - deprecated: false + deprecationDate: + description: GPCRDB at Radboud University + id: 633 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 632 + location: + countryCode: NL + countryName: Netherlands + name: Radboud University Nijmegen Medical Centre, Nijmegen, + rorId: + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00100271 + name: GPCRDB at Radboud University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.gpcrdb.org/ + sampleId: RL3R1_HUMAN + urlPattern: http://www.gpcrdb.org/protein/{$id}/ + sampleId: RL3R1_HUMAN + - created: 2019-06-11T14:16:27.678+0000 + deprecated: false + deprecationDate: + description: HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier. + id: 634 + mirId: MIR:00000213 + modified: 2019-06-11T14:16:27.678+0000 + name: HOGENOM + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: hogenom + resources: + - deprecated: false + deprecationDate: + description: HOGENOM at CNRS + id: 636 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 635 + location: + countryCode: FR + countryName: France + name: Laboratoire de BiomĆ©trie et Biologie Evolutive, CNRS, Lyon + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100272 + name: HOGENOM at CNRS + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://pbil.univ-lyon1.fr/databases/hogenom/ + sampleId: HBG284870 + urlPattern: http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query={$id} + sampleId: HBG284870 + - created: 2019-06-11T14:16:27.950+0000 + deprecated: false + deprecationDate: + description: Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl. + id: 637 + mirId: MIR:00000214 + modified: 2019-06-11T14:16:27.950+0000 + name: GeneTree + namespaceEmbeddedInLui: false + pattern: ^ENSGT\d+$ + prefix: genetree + resources: + - deprecated: false + deprecationDate: + description: GeneTree at Ensembl + id: 638 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 8 + location: + countryCode: GB + countryName: United Kingdom + name: Sanger Institute and European Bioinformatics Institute, Hinxton, Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100273 + name: GeneTree at Ensembl + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.ensembl.org/ + sampleId: ENSGT00550000074763 + urlPattern: http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt={$id} + sampleId: ENSGT00550000074763 + - created: 2019-06-11T14:16:28.184+0000 + deprecated: false + deprecationDate: + description: HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein. + id: 639 + mirId: MIR:00000215 + modified: 2019-06-11T14:16:28.184+0000 + name: HSSP + namespaceEmbeddedInLui: false + pattern: ^\w{4}$ + prefix: hssp + resources: + - deprecated: false + deprecationDate: + description: HSSP at EMBL + id: 641 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 640 + location: + countryCode: DE + countryName: Germany + name: Protein Design Group, European Molecular Biology Laboratory, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100274 + name: HSSP at EMBL + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://swift.cmbi.kun.nl/swift/hssp/ + sampleId: 102l + urlPattern: ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/{$id}.hssp.bz2 + - deprecated: false + deprecationDate: + description: HSSP at CMBI + id: 643 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 642 + location: + countryCode: NL + countryName: Netherlands + name: Nijmegen Centre for Molecular Life Sciences, CMBI, Nijmegen + rorId: + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00100458 + name: HSSP at CMBI + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/ + sampleId: 102l + urlPattern: ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/{$id}.hssp.bz2 + sampleId: 102l + - created: 2019-06-11T14:16:28.639+0000 + deprecated: false + deprecationDate: + description: Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information. + id: 644 + mirId: MIR:00000216 + modified: 2019-06-11T14:16:28.639+0000 + name: MycoBrowser tuberculosis + namespaceEmbeddedInLui: false + pattern: ^Rv\d{4}(A|B|c)?$ + prefix: myco.tuber + resources: + - deprecated: false + deprecationDate: + description: MycoBrowser tuberculosis at Global Health Institute + id: 646 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 645 + location: + countryCode: CH + countryName: Switzerland + name: Global Health Institute, Lausanne + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100275 + name: MycoBrowser tuberculosis at Global Health Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://tuberculist.epfl.ch/ + sampleId: Rv1908c + urlPattern: http://tuberculist.epfl.ch/quicksearch.php?gene+name={$id} + sampleId: Rv1908c + - created: 2019-06-11T14:16:28.887+0000 + deprecated: false + deprecationDate: + description: Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information. + id: 647 + mirId: MIR:00000217 + modified: 2019-06-11T14:16:28.887+0000 + name: MycoBrowser leprae + namespaceEmbeddedInLui: false + pattern: ^ML\w+$ + prefix: myco.lepra + resources: + - deprecated: false + deprecationDate: + description: MycoBrowser leprae at Global Health Institute + id: 648 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 645 + location: + countryCode: CH + countryName: Switzerland + name: Global Health Institute, Lausanne + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100276 + name: MycoBrowser leprae at Global Health Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://mycobrowser.epfl.ch/leprosy.html + sampleId: ML0224 + urlPattern: http://mycobrowser.epfl.ch/leprosysearch.php?gene+name={$id} + sampleId: ML0224 + - created: 2019-06-11T14:16:29.087+0000 + deprecated: false + deprecationDate: + description: Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information. + id: 649 + mirId: MIR:00000218 + modified: 2019-06-11T14:16:29.087+0000 + name: MycoBrowser marinum + namespaceEmbeddedInLui: false + pattern: ^MMAR\_\d+$ + prefix: myco.marinum + resources: + - deprecated: false + deprecationDate: + description: MycoBrowser marinum at Global Health Institute + id: 650 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 645 + location: + countryCode: CH + countryName: Switzerland + name: Global Health Institute, Lausanne + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100277 + name: MycoBrowser marinum at Global Health Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://mycobrowser.epfl.ch/marinolist.html + sampleId: MMAR_2462 + urlPattern: http://mycobrowser.epfl.ch/marinosearch.php?gene+name={$id} + sampleId: MMAR_2462 + - created: 2019-06-11T14:16:29.310+0000 + deprecated: false + deprecationDate: + description: Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information. + id: 651 + mirId: MIR:00000219 + modified: 2019-06-11T14:16:29.310+0000 + name: MycoBrowser smegmatis + namespaceEmbeddedInLui: false + pattern: ^MSMEG\w+$ + prefix: myco.smeg + resources: + - deprecated: false + deprecationDate: + description: MycoBrowser smegmatis at Global Health Institute + id: 652 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 645 + location: + countryCode: CH + countryName: Switzerland + name: Global Health Institute, Lausanne + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100278 + name: MycoBrowser smegmatis at Global Health Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://mycobrowser.epfl.ch/smegmalist.html + sampleId: MSMEG_3769 + urlPattern: http://mycobrowser.epfl.ch/smegmasearch.php?gene+name={$id} + sampleId: MSMEG_3769 + - created: 2019-06-11T14:16:29.544+0000 + deprecated: false + deprecationDate: + description: Orphanet is a reference portal for information on rare diseases and orphan drugs. Itā€™s aim is to help improve the diagnosis, care and treatment of patients with rare diseases. + id: 653 + mirId: MIR:00000220 + modified: 2019-06-11T14:16:29.544+0000 + name: Orphanet + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: orphanet + resources: + - deprecated: false + deprecationDate: + description: Orphanet at Inserm + id: 655 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 654 + location: + countryCode: FR + countryName: France + name: Inserm, HĆ“pital Broussais, Paris + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100279 + name: Orphanet at Inserm + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.orpha.net/consor/ + sampleId: '85163' + urlPattern: http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert={$id} + - deprecated: false + deprecationDate: + description: Bio2RDF + id: 656 + institution: + description: Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers. + homeUrl: https://bio2rdf.org + id: 33 + location: + countryCode: US + countryName: United States + name: Bio2RDF.org + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100701 + name: Bio2RDF + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://orphanet.bio2rdf.org/fct + sampleId: '85163' + urlPattern: http://orphanet.bio2rdf.org/describe/?url=http://bio2rdf.org/orphanet:{$id} + sampleId: '85163' + - created: 2019-06-11T14:16:29.860+0000 + deprecated: false + deprecationDate: + description: OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups + id: 657 + mirId: MIR:00000221 + modified: 2019-06-11T14:16:29.860+0000 + name: OrthoDB + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: orthodb + resources: + - deprecated: false + deprecationDate: + description: OrthoDB at Swiss Institute of Bioinformatics + id: 659 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 658 + location: + countryCode: CH + countryName: Switzerland + name: Department of Genetic Medicine and Development, Swiss Institute of Bioinformatics, Geneva + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100280 + name: OrthoDB at Swiss Institute of Bioinformatics + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://cegg.unige.ch/orthodb4 + sampleId: Q9P0K8 + urlPattern: http://cegg.unige.ch/orthodb/results?searchtext={$id} + sampleId: Q9P0K8 + - created: 2019-06-11T14:16:30.097+0000 + deprecated: false + deprecationDate: + description: Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences. + id: 660 + mirId: MIR:00000222 + modified: 2019-06-11T14:16:30.097+0000 + name: Peroxibase + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: peroxibase + resources: + - deprecated: false + deprecationDate: + description: Peroxibase at University of Geneva + id: 662 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 661 + location: + countryCode: CH + countryName: Switzerland + name: Department of Plant Biology, University of Geneva, Geneva + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100281 + name: Peroxibase at University of Geneva + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://peroxibase.toulouse.inra.fr/ + sampleId: '5282' + urlPattern: http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id={$id} + sampleId: '5282' + - created: 2019-06-11T14:16:30.326+0000 + deprecated: false + deprecationDate: + description: PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins. + id: 663 + mirId: MIR:00000223 + modified: 2019-06-11T14:16:30.326+0000 + name: PhylomeDB + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: phylomedb + resources: + - deprecated: false + deprecationDate: + description: PhylomeDB at Centro de InvestigaciĆ³n PrĆ­ncipe Felipe + id: 665 + institution: + description: The Centre for Genomic Regulation (CRG) is an international biomedical research institute of excellence, created in December 2000. It is a non-profit foundation funded by the Catalan Government through the Departments of Business & Knowledge, the Spanish Ministry of Science, Innovation & Universities, the "la Caixa" Banking Foundation, and includes the participation of Pompeu Fabra University. + homeUrl: https://www.crg.eu + id: 664 + location: + countryCode: ES + countryName: Spain + name: Centre for Genomic Regulation + rorId: https://ror.org/03wyzt892 + location: + countryCode: ES + countryName: Spain + mirId: MIR:00100282 + name: PhylomeDB at Centro de InvestigaciĆ³n PrĆ­ncipe Felipe + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://phylomedb.org/ + sampleId: Phy000CLXM_RAT + urlPattern: http://phylomedb.org/?seqid={$id} + sampleId: Phy000CLXM_RAT + - created: 2019-06-11T14:16:30.547+0000 + deprecated: false + deprecationDate: + description: The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates. + id: 666 + mirId: MIR:00000224 + modified: 2019-06-11T14:16:30.547+0000 + name: SubstrateDB + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: pmap.substratedb + resources: + - deprecated: false + deprecationDate: + description: SubstrateDB at The Burnham Institute for Medical Research + id: 668 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 667 + location: + countryCode: US + countryName: United States + name: The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center, The Burnham Institute for Medical Research, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100283 + name: SubstrateDB at The Burnham Institute for Medical Research + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://substrate.burnham.org/ + sampleId: '1915' + urlPattern: http://substrate.burnham.org/protein/annotation/{$id}/html + sampleId: '1915' + - created: 2019-06-11T14:16:30.793+0000 + deprecated: false + deprecationDate: + description: The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites). + id: 669 + mirId: MIR:00000225 + modified: 2019-06-11T14:16:30.793+0000 + name: CutDB + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: pmap.cutdb + resources: + - deprecated: false + deprecationDate: + description: CutDB at The Burnham Institute for Medical Research + id: 670 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 667 + location: + countryCode: US + countryName: United States + name: The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center, The Burnham Institute for Medical Research, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100284 + name: CutDB at The Burnham Institute for Medical Research + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://cutdb.burnham.org + sampleId: '25782' + urlPattern: http://cutdb.burnham.org/relation/show/{$id} + sampleId: '25782' + - created: 2019-06-11T14:16:31.086+0000 + deprecated: false + deprecationDate: + description: ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters. + id: 671 + mirId: MIR:00000226 + modified: 2019-06-11T14:16:31.086+0000 + name: ProtClustDB + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: protclustdb + resources: + - deprecated: false + deprecationDate: + description: ProtClustDB at NCBI + id: 672 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100285 + name: ProtClustDB at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/proteinclusters?db=proteinclusters + sampleId: O80725 + urlPattern: https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term={$id} + sampleId: O80725 + - created: 2019-06-11T14:16:31.282+0000 + deprecated: false + deprecationDate: + description: The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers. + id: 673 + mirId: MIR:00000227 + modified: 2019-06-11T14:16:31.282+0000 + name: PMP + namespaceEmbeddedInLui: false + pattern: ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ + prefix: pmp + resources: + - deprecated: true + deprecationDate: 2020-03-03T06:27:49.602+0000 + description: PMP at University of Basel + id: 675 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 674 + location: + countryCode: CH + countryName: Switzerland + name: Biozentrum, University of Basel, Basel + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100286 + name: PMP at University of Basel + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.proteinmodelportal.org/ + sampleId: Q0VCA6 + urlPattern: https://registry.identifiers.org/deprecation/resources/MIR:00100286/{$id} + sampleId: Q0VCA6 + - created: 2019-06-11T14:16:31.529+0000 + deprecated: false + deprecationDate: + description: ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. 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This collection references cluster information. + id: 679 + mirId: MIR:00000229 + modified: 2019-06-11T14:16:31.786+0000 + name: ProtoNet Cluster + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: protonet.cluster + resources: + - deprecated: false + deprecationDate: + description: ProtoNet at Hebrew University + id: 680 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 677 + location: + countryCode: IL + countryName: Israel + name: Hebrew University, Jerusalem + rorId: + location: + countryCode: IL + countryName: Israel + mirId: MIR:00100288 + name: ProtoNet at Hebrew University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.protonet.cs.huji.ac.il/ + sampleId: '4349895' + urlPattern: http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster={$id} + sampleId: '4349895' + - created: 2019-06-11T14:16:32.004+0000 + deprecated: false + deprecationDate: + description: REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data. + id: 681 + mirId: MIR:00000230 + modified: 2019-06-11T14:16:32.004+0000 + name: REBASE + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: rebase + resources: + - deprecated: false + deprecationDate: + description: REBASE at New England Biolabs + id: 683 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 682 + location: + countryCode: US + countryName: United States + name: New England Biolabs, Ipswich, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100289 + name: REBASE at New England Biolabs + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://rebase.neb.com/rebase/ + sampleId: '101' + urlPattern: http://rebase.neb.com/rebase/enz/{$id}.html + sampleId: '101' + - created: 2019-06-11T14:16:32.267+0000 + deprecated: false + deprecationDate: + description: The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences. + id: 684 + mirId: MIR:00000231 + modified: 2019-06-11T14:16:32.267+0000 + name: SWISS-MODEL Repository + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: swiss-model + resources: + - deprecated: false + deprecationDate: + description: SWISS-MODEL at SIB Swiss Institute of Bioinformatics + id: 686 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 685 + location: + countryCode: CH + countryName: Switzerland + name: Biozentrum, University of Basel and SIB Swiss Institute of Bioinformatics, Basel + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100290 + name: SWISS-MODEL at SIB Swiss Institute of Bioinformatics + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://swissmodel.expasy.org + sampleId: P23298 + urlPattern: https://swissmodel.expasy.org/repository/uniprot/{$id} + sampleId: P23298 + - created: 2019-06-11T14:16:32.515+0000 + deprecated: false + deprecationDate: + description: 'VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis.' + id: 687 + mirId: MIR:00000232 + modified: 2019-06-11T14:16:32.515+0000 + name: VectorBase + namespaceEmbeddedInLui: false + pattern: ^\D{4}\d{6}(\-\D{2})?$ + prefix: vectorbase + resources: + - deprecated: false + deprecationDate: + description: Vectorbase at EMBL-EBI + id: 688 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100291 + name: Vectorbase at EMBL-EBI + official: true + providerCode: ebi + resourceHomeUrl: https://www.vectorbase.org/ + sampleId: ISCW007415 + urlPattern: https://www.vectorbase.org/search/site/{$id}?&site="Genome" + sampleId: ISCW007415 + - created: 2019-06-11T14:16:33.213+0000 + deprecated: false + deprecationDate: + description: The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process. + id: 694 + mirId: MIR:00000234 + modified: 2019-06-11T14:16:33.213+0000 + name: Cell Cycle Ontology + namespaceEmbeddedInLui: true + pattern: ^CCO\:\w+$ + prefix: cco + resources: + - deprecated: false + deprecationDate: + description: Cell Cycle Ontology through OLS + id: 695 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100294 + name: Cell Cycle Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=CCO + sampleId: '0000003' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/cco/terms?obo_id=CCO:{$id} + sampleId: '0000003' + - created: 2019-06-11T14:16:33.415+0000 + deprecated: false + deprecationDate: + description: The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence. + id: 696 + mirId: MIR:00000235 + modified: 2019-06-11T14:16:33.415+0000 + name: miRBase mature sequence + namespaceEmbeddedInLui: false + pattern: MIMAT\d{7} + prefix: mirbase.mature + resources: + - deprecated: false + deprecationDate: + description: miRBase + id: 697 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 264 + location: + countryCode: GB + countryName: United Kingdom + name: Faculty of Life Sciences, University of Manchester + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100296 + name: miRBase + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.mirbase.org/ + sampleId: MIMAT0000001 + urlPattern: http://www.mirbase.org/cgi-bin/mature.pl?mature_acc={$id} + sampleId: MIMAT0000001 + - created: 2019-06-11T14:16:33.634+0000 + deprecated: false + deprecationDate: + description: neXtProt is a resource on human proteins, and includes information such as proteinsā€™ function, subcellular location, expression, interactions and role in diseases. + id: 698 + mirId: MIR:00000236 + modified: 2019-06-11T14:16:33.634+0000 + name: nextProt + namespaceEmbeddedInLui: false + pattern: ^NX_\w+ + prefix: nextprot + resources: + - deprecated: false + deprecationDate: + description: nextProt at Swiss Institute of Bioinformatics + id: 700 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100300 + name: nextProt at Swiss Institute of Bioinformatics + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.nextprot.org/ + sampleId: NX_O00165 + urlPattern: https://www.nextprot.org/db/entry/{$id} + sampleId: NX_O00165 + - created: 2019-06-11T14:16:33.869+0000 + deprecated: false + deprecationDate: + description: CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information. + id: 701 + mirId: MIR:00000237 + modified: 2019-06-11T14:16:33.869+0000 + name: CAS + namespaceEmbeddedInLui: false + pattern: ^\d{1,7}\-\d{2}\-\d$ + prefix: cas + resources: + - deprecated: false + deprecationDate: + description: CAS through Common Chemistry + id: 703 + institution: + description: CAS is a global organization of expert scientists, technologists, and business leaders with a successful and extended history of delivering scientific information opportunities. + homeUrl: https://www.cas.org + id: 702 + location: + countryCode: US + countryName: United States + name: CAS American Chemical Society + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100301 + name: CAS through Common Chemistry + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://commonchemistry.org + sampleId: 50-00-0 + urlPattern: http://commonchemistry.org/ChemicalDetail.aspx?ref={$id} + - deprecated: false + deprecationDate: + description: Scholia is a service that creates visual scholarly profiles for topic, people, organizations, species, chemicals, etc using bibliographic and other information in Wikidata. + id: 2454 + institution: + description: >- + Maastricht University (UM) is the most international university in + the Netherlands and, with 18,000 students and 4,400 employees, is + still growing. The university stands out for its innovative + education model, international character and multidisciplinary + approach to research and education. + + Thanks to its high-quality research and study programmes as well as a strong focus on social engagement, UM has quickly built up a solid reputation. Today it is considered one of the best young universities in the world. + homeUrl: https://www.maastrichtuniversity.nl + id: 283 + location: + countryCode: NL + countryName: Netherlands + name: Maastricht University + rorId: https://ror.org/02jz4aj89 + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00000732 + name: Scholia + official: false + providerCode: scholia + resourceHomeUrl: https://scholia.toolforge.org/ + sampleId: 50-00-0 + urlPattern: https://scholia.toolforge.org/cas/{$id} + sampleId: 50-00-0 + - created: 2019-06-11T14:16:34.113+0000 + deprecated: false + deprecationDate: + description: KEGG Genome is a collection of organisms whose genomes have been completely sequenced. + id: 704 + mirId: MIR:00000238 + modified: 2019-06-11T14:16:34.113+0000 + name: KEGG Genome + namespaceEmbeddedInLui: false + pattern: ^(T0\d+|\w{3,5})$ + prefix: kegg.genome + resources: + - deprecated: false + deprecationDate: + description: KEGG Genome Database + id: 706 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 705 + location: + countryCode: JP + countryName: Japan + name: Kyoto University Bioinformatics Center, Kyoto + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100303 + name: KEGG Genome Database + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.genome.jp/kegg/catalog/org_list.html + sampleId: eco + urlPattern: http://www.kegg.jp/entry/{$id} + sampleId: eco + - created: 2019-06-11T14:16:34.345+0000 + deprecated: false + deprecationDate: + description: The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species. + id: 707 + mirId: MIR:00000239 + modified: 2019-06-11T14:16:34.345+0000 + name: KEGG Metagenome + namespaceEmbeddedInLui: false + pattern: ^T3\d+$ + prefix: kegg.metagenome + resources: + - deprecated: false + deprecationDate: + description: KEGG Metagenome Database + id: 708 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 705 + location: + countryCode: JP + countryName: Japan + name: Kyoto University Bioinformatics Center, Kyoto + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100304 + name: KEGG Metagenome Database + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.genome.jp/kegg/catalog/org_list3.html + sampleId: T30002 + urlPattern: http://www.kegg.jp/entry/{$id} + sampleId: T30002 + - created: 2019-06-11T14:16:34.542+0000 + deprecated: false + deprecationDate: + description: NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases. + id: 709 + mirId: MIR:00000240 + modified: 2019-06-11T14:16:34.542+0000 + name: NARCIS + namespaceEmbeddedInLui: false + pattern: ^oai\:cwi\.nl\:\d+$ + prefix: narcis + resources: + - deprecated: false + deprecationDate: + description: NARCIS at The Hague + id: 711 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 710 + location: + countryCode: NL + countryName: Netherlands + name: NARCIS, Royal Netherlands Academy of Science and Arts + rorId: + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00100306 + name: NARCIS at The Hague + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.narcis.nl/?Language=en + sampleId: oai:cwi.nl:4725 + urlPattern: http://www.narcis.nl/publication/RecordID/{$id} + sampleId: oai:cwi.nl:4725 + - created: 2019-06-11T14:16:34.772+0000 + deprecated: false + deprecationDate: + description: The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST). + id: 712 + mirId: MIR:00000241 + modified: 2019-06-11T14:16:34.772+0000 + name: Japan Chemical Substance Dictionary + namespaceEmbeddedInLui: false + pattern: ^J\d{1,3}(\.\d{3})?(\.\d{1,3})?[A-Za-z]$ + prefix: jcsd + resources: + - deprecated: false + deprecationDate: + description: Japan Chemical Substance Dictionary + id: 714 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 713 + location: + countryCode: JP + countryName: Japan + name: Japan Science and Technology Agency + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100307 + name: Japan Chemical Substance Dictionary + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://jglobal.jst.go.jp/en/ + sampleId: J55.713G + urlPattern: http://jglobal.jst.go.jp/en/redirect?Nikkaji_No={$id} + sampleId: J55.713G + - created: 2019-06-11T14:16:35.052+0000 + deprecated: false + deprecationDate: + description: 'The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions.' + id: 715 + mirId: MIR:00000242 + modified: 2019-06-11T14:16:35.052+0000 + name: Pathway Ontology + namespaceEmbeddedInLui: true + pattern: ^PW:\d{7}$ + prefix: pw + resources: + - deprecated: false + deprecationDate: + description: Pathway Ontology at Rat Genome Database + id: 717 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 716 + location: + countryCode: US + countryName: United States + name: Medical College of Wisconsin, Wisconsin + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100309 + name: Pathway Ontology at Rat Genome Database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://rgd.mcw.edu/rgdweb/ontology/search.html + sampleId: '0000208' + urlPattern: http://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=PW:{$id} + - deprecated: false + deprecationDate: + description: Pathway Ontology through OLS + id: 718 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100310 + name: Pathway Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/pw + sampleId: '0000208' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/pw/terms?obo_id=PW:{$id} + - deprecated: false + deprecationDate: + description: Pathway Ontology through BioPortal + id: 720 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 719 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100311 + name: Pathway Ontology through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/PW + sampleId: '0000208' + urlPattern: http://purl.bioontology.org/ontology/PW/PW:{$id} + sampleId: '0000208' + - created: 2019-06-11T14:16:35.560+0000 + deprecated: false + deprecationDate: + description: 'The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.' + id: 721 + mirId: MIR:00000243 + modified: 2019-06-11T14:16:35.560+0000 + name: Sequence Read Archive + namespaceEmbeddedInLui: false + pattern: ^[SED]R[APRSXZ]\d+$ + prefix: insdc.sra + resources: + - deprecated: false + deprecationDate: + description: Sequence Read Archive at NCBI + id: 722 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100312 + name: Sequence Read Archive at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/sra + sampleId: SRX000007 + urlPattern: https://www.ncbi.nlm.nih.gov/sra/{$id} + - deprecated: false + deprecationDate: + description: European Nucleotide Archive (ENA) + id: 723 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100313 + name: European Nucleotide Archive (ENA) + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/ena + sampleId: SRX000007 + urlPattern: https://www.ebi.ac.uk/ena/data/view/{$id} + - deprecated: false + deprecationDate: + description: DDBJ Sequence Read Archive (DRA) + id: 724 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 121 + location: + countryCode: JP + countryName: Japan + name: DNA Data Bank of Japan, Mishima, Shizuoka + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100314 + name: DDBJ Sequence Read Archive (DRA) + official: false + providerCode: ddbj + resourceHomeUrl: http://trace.ddbj.nig.ac.jp/dra/ + sampleId: SRX000007 + urlPattern: http://trace.ddbj.nig.ac.jp/DRASearch/experiment?acc={$id} + sampleId: SRX000007 + - created: 2019-06-11T14:16:35.987+0000 + deprecated: false + deprecationDate: + description: ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor. + id: 725 + mirId: MIR:00000244 + modified: 2019-06-11T14:16:35.987+0000 + name: ScerTF + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: scretf + resources: + - deprecated: false + deprecationDate: + description: ScerTF at Washington University + id: 727 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 726 + location: + countryCode: US + countryName: United States + name: Department of Genetics, Washington University Medical School, St Louis, Missouri + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100315 + name: ScerTF at Washington University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://stormo.wustl.edu/ScerTF/ + sampleId: RSC3 + urlPattern: http://stormo.wustl.edu/ScerTF/details/{$id}/ + sampleId: RSC3 + - created: 2019-06-11T14:16:36.222+0000 + deprecated: false + deprecationDate: + description: The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. + id: 728 + mirId: MIR:00000245 + modified: 2019-06-11T14:16:36.222+0000 + name: PharmGKB Gene + namespaceEmbeddedInLui: false + pattern: ^PA\w+$ + prefix: pharmgkb.gene + resources: + - deprecated: false + deprecationDate: + description: PharmGKB Gene at Stanford + id: 729 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 298 + location: + countryCode: US + countryName: United States + name: Department of Genetics, School of Medicine, Stanford University, Stanford, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100316 + name: PharmGKB Gene at Stanford + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.pharmgkb.org/ + sampleId: PA131 + urlPattern: http://www.pharmgkb.org/gene/{$id} + sampleId: PA131 + - created: 2019-06-11T14:16:36.416+0000 + deprecated: false + deprecationDate: + description: miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species. + id: 730 + mirId: MIR:00000246 + modified: 2019-06-11T14:16:36.416+0000 + name: miRNEST + namespaceEmbeddedInLui: false + pattern: ^MNEST\d+$ + prefix: mirnest + resources: + - deprecated: false + deprecationDate: + description: miRNEST at Adam Mickiewicz University + id: 732 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 731 + location: + countryCode: PL + countryName: Poland + name: Institute of Molecular Biology, Adam Mickiewicz University, Poznan + rorId: + location: + countryCode: PL + countryName: Poland + mirId: MIR:00100317 + name: miRNEST at Adam Mickiewicz University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://rhesus.amu.edu.pl/mirnest/copy/ + sampleId: MNEST029358 + urlPattern: http://rhesus.amu.edu.pl/mirnest/copy/details.php?id={$id} + sampleId: MNEST029358 + - created: 2019-06-11T14:16:36.669+0000 + deprecated: false + deprecationDate: + description: NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters. + id: 733 + mirId: MIR:00000247 + modified: 2019-06-11T14:16:36.669+0000 + name: NAPP + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: napp + resources: + - deprecated: false + deprecationDate: + description: NAPP at CNRS + id: 735 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 734 + location: + countryCode: FR + countryName: France + name: Institut de GĆ©nĆ©tique et Microbiologie, UMR 8621, CNRS, UniversitĆ© Paris Sud, Paris + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100318 + name: NAPP at CNRS + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://napp.u-psud.fr/ + sampleId: '351' + urlPattern: http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie={$id} + sampleId: '351' + - created: 2019-06-11T14:16:36.900+0000 + deprecated: false + deprecationDate: + description: NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4. + id: 736 + mirId: MIR:00000248 + modified: 2019-06-11T14:16:36.900+0000 + name: NONCODE v3 + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: noncodev3 + resources: + - deprecated: false + deprecationDate: + description: NONCODE at Chinese Academy of Sciences + id: 738 + institution: + description: The Chinese Academy of Sciences is the linchpin of Chinaā€™s drive to explore and harness high technology and the natural sciences for the benefit of China and the world. CAS brings together scientists and engineers from China and around the world to address both theoretical and applied problems using world-class scientific and management approaches. + homeUrl: http://english.cas.cn/ + id: 737 + location: + countryCode: CN + countryName: China + name: Chinese Academy of Sciences + rorId: https://ror.org/034t30j35 + location: + countryCode: CN + countryName: China + mirId: MIR:00100319 + name: NONCODE at Chinese Academy of Sciences + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.noncode.org/ + sampleId: '377550' + urlPattern: http://www.noncode.org/NONCODERv3/ncrna.php?ncid={$id} + sampleId: '377550' + - created: 2019-06-11T14:16:37.163+0000 + deprecated: false + deprecationDate: + description: The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region. + id: 739 + mirId: MIR:00000249 + modified: 2019-06-11T14:16:37.163+0000 + name: VIRsiRNA + namespaceEmbeddedInLui: false + pattern: ^virsi\d+$ + prefix: virsirna + resources: + - deprecated: false + deprecationDate: + description: VIRsiRNA at Institute of Microbial Technology + id: 741 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 740 + location: + countryCode: IN + countryName: India + name: Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Chandigarh, India + rorId: + location: + countryCode: IN + countryName: India + mirId: MIR:00100320 + name: VIRsiRNA at Institute of Microbial Technology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://crdd.osdd.net/servers/virsirnadb + sampleId: virsi1909 + urlPattern: http://crdd.osdd.net/servers/virsirnadb/record.php?details={$id} + sampleId: virsi1909 + - created: 2019-06-11T14:16:37.386+0000 + deprecated: false + deprecationDate: + description: Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances. + id: 742 + mirId: MIR:00000250 + modified: 2019-06-11T14:16:37.386+0000 + name: ELM + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z_0-9]+$ + prefix: elm + resources: + - deprecated: false + deprecationDate: + description: ELM at EMBL (Germany) + id: 744 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 743 + location: + countryCode: DE + countryName: Germany + name: Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100321 + name: ELM at EMBL (Germany) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://elm.eu.org/ + sampleId: CLV_MEL_PAP_1 + urlPattern: http://elm.eu.org/elms/elmPages/{$id}.html + sampleId: CLV_MEL_PAP_1 + - created: 2019-06-11T14:16:37.622+0000 + deprecated: false + deprecationDate: + description: MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank. + id: 745 + mirId: MIR:00000251 + modified: 2019-06-11T14:16:37.622+0000 + name: MimoDB + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: mimodb + resources: + - deprecated: false + deprecationDate: + description: BDB at University of Electronic Science and Technology of China + id: 747 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 746 + location: + countryCode: CN + countryName: China + name: Key Laboratory for Neuroinformation of Ministry of Education, University of Electronic Science and Technology of China, Sichuan + rorId: + location: + countryCode: CN + countryName: China + mirId: MIR:00100322 + name: BDB at University of Electronic Science and Technology of China + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://immunet.cn/bdb/ + sampleId: '1' + urlPattern: http://immunet.cn/bdb/index.php/mimoset/{$id} + sampleId: '1' + - created: 2019-06-11T14:16:37.867+0000 + deprecated: false + deprecationDate: + description: SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments. + id: 748 + mirId: MIR:00000252 + modified: 2019-06-11T14:16:37.867+0000 + name: SitEx + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: sitex + resources: + - deprecated: false + deprecationDate: + description: SitEx at Novosibirsk State University + id: 750 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 749 + location: + countryCode: RU + countryName: Russian Federation + name: Novosibirsk State University, Novosibirsk + rorId: + location: + countryCode: RU + countryName: Russian Federation + mirId: MIR:00100323 + name: SitEx at Novosibirsk State University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www-bionet.sscc.ru/sitex/ + sampleId: '1000' + urlPattern: http://www-bionet.sscc.ru/sitex/index.php?siteid={$id} + sampleId: '1000' + - created: 2019-06-11T14:16:38.105+0000 + deprecated: false + deprecationDate: + description: The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information. + id: 751 + mirId: MIR:00000253 + modified: 2019-06-11T14:16:38.105+0000 + name: BYKdb + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9]+$ + prefix: bykdb + resources: + - deprecated: false + deprecationDate: + description: BYKdb at CNRS + id: 753 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 752 + location: + countryCode: FR + countryName: France + name: UnitĆ© Bases MolĆ©culaires et Structurales des SystĆØmes Infectieux; CNRS - UniversitĆ© Claude Bernard, Lyon + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100324 + name: BYKdb at CNRS + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://bykdb.ibcp.fr/BYKdb/ + sampleId: A0A009E7X8 + urlPattern: https://bykdb.ibcp.fr/data/html/annotated/{$id}.html + sampleId: A0A009E7X8 + - created: 2019-06-11T14:16:38.340+0000 + deprecated: false + deprecationDate: + description: ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails. + id: 754 + mirId: MIR:00000254 + modified: 2019-06-11T14:16:38.340+0000 + name: Conoserver + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: conoserver + resources: + - deprecated: false + deprecationDate: + description: ConoServer at University of Queensland + id: 755 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 582 + location: + countryCode: AU + countryName: Australia + name: Institute for Molecular Bioscience, The University of Queensland, Brisbane + rorId: + location: + countryCode: AU + countryName: Australia + mirId: MIR:00100325 + name: ConoServer at University of Queensland + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.conoserver.org/ + sampleId: '2639' + urlPattern: http://www.conoserver.org/?page=card&table=protein&id={$id} + sampleId: '2639' + - created: 2019-06-11T14:16:38.521+0000 + deprecated: false + deprecationDate: + description: 'TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli.' + id: 756 + mirId: MIR:00000255 + modified: 2019-06-11T14:16:38.521+0000 + name: TopFind + namespaceEmbeddedInLui: false + pattern: ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ + prefix: topfind + resources: + - deprecated: false + deprecationDate: + description: TopFind at University of British Columbia + id: 758 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 757 + location: + countryCode: CA + countryName: Canada + name: Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100326 + name: TopFind at University of British Columbia + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://clipserve.clip.ubc.ca/topfind + sampleId: Q9UKQ2 + urlPattern: http://clipserve.clip.ubc.ca/topfind/proteins/{$id} + sampleId: Q9UKQ2 + - created: 2019-06-11T14:16:38.756+0000 + deprecated: false + deprecationDate: + description: MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures. + id: 759 + mirId: MIR:00000256 + modified: 2019-06-11T14:16:38.756+0000 + name: MIPModDB + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: mipmod + resources: + - deprecated: false + deprecationDate: + description: MIPModDB at Indian Institute of Technology Kanpur + id: 761 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 760 + location: + countryCode: IN + countryName: India + name: Department of Biological Sciences and Bioengineering, Indian Institute of Technology Kanpur, Kanpur + rorId: + location: + countryCode: IN + countryName: India + mirId: MIR:00100327 + name: MIPModDB at Indian Institute of Technology Kanpur + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bioinfo.iitk.ac.in/MIPModDB + sampleId: HOSAPI0399 + urlPattern: http://bioinfo.iitk.ac.in/MIPModDB/result.php?code={$id} + sampleId: HOSAPI0399 + - created: 2019-06-11T14:16:38.984+0000 + deprecated: false + deprecationDate: + description: 'The Cell: An Image Libraryā„¢ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes.' + id: 762 + mirId: MIR:00000257 + modified: 2019-06-11T14:16:38.984+0000 + name: Cell Image Library + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: cellimage + resources: + - deprecated: false + deprecationDate: + description: Cell Image Library at American Society for Cell Biology + id: 764 + institution: + description: The mission of NCMIR is to develop technologies to bridge understanding of biological systems between the gross anatomical and molecular scales and to make these technologies broadly available to biomedical researchers. NCMIR provides expertise, infrastructure, technological development, and an environment in which new information about the 3D ultrastructure of tissues, cells, and macromolecular complexes may be accurately and easily obtained and analyzed. + homeUrl: https://ncmir.ucsd.edu + id: 763 + location: + countryCode: US + countryName: United States + name: National Center for Microscopy and Imaging Research + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100328 + name: Cell Image Library at American Society for Cell Biology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://cellimagelibrary.org/ + sampleId: '24801' + urlPattern: http://cellimagelibrary.org/images/{$id} + sampleId: '24801' + - created: 2019-06-11T14:16:39.210+0000 + deprecated: false + deprecationDate: + description: The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network. + id: 765 + mirId: MIR:00000258 + modified: 2019-06-11T14:16:39.210+0000 + name: COMBINE specifications + namespaceEmbeddedInLui: false + pattern: ^\w+(\-|\.|\w)*$ + prefix: combine.specifications + resources: + - deprecated: false + deprecationDate: + description: COMBINE at EBI + id: 766 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100329 + name: COMBINE at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://co.mbine.org/standards/ + sampleId: sbgn.er.level-1.version-1.2 + urlPattern: https://co.mbine.org/specifications/{$id} + sampleId: sbgn.er.level-1.version-1.2 + - created: 2019-06-11T14:16:39.396+0000 + deprecated: false + deprecationDate: + description: CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it. + id: 767 + mirId: MIR:00000261 + modified: 2019-06-11T14:16:39.396+0000 + name: CABRI + namespaceEmbeddedInLui: false + pattern: ^([A-Za-z]+)?(\_)?([A-Za-z-]+)\:([A-Za-z0-9 ]+)$ + prefix: cabri + resources: + - deprecated: false + deprecationDate: + description: CABRI Cell Lines catalogue in Genova (SRS) + id: 769 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 768 + location: + countryCode: IT + countryName: Italy + name: National Cancer Research Institute of Genova, Genova + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00100334 + name: CABRI Cell Lines catalogue in Genova (SRS) + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.cabri.org/ + sampleId: dsmz_mutz-id:ACC 291 + urlPattern: http://www.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[{$id}] + - deprecated: false + deprecationDate: + description: CABRI Cell Lines catalogue in Brussels (SRS) + id: 771 + institution: + description: he BCCM consortium has grown to become one of the most important culture collections in the world, both in terms of the size and quality of the collections (bacteria, yeasts, moulds, plasmids, diatoms, DNA libraries) and its expertise. Not only does the consortium keep more than 200,000 quality controlled, characterised and documented units of biological material, but it also offers its expertise through services and partnership projects. + homeUrl: http://bccm.belspo.be/ + id: 770 + location: + countryCode: BE + countryName: Belgium + name: BCCM + rorId: + location: + countryCode: BE + countryName: Belgium + mirId: MIR:00100335 + name: CABRI Cell Lines catalogue in Brussels (SRS) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.be.cabri.org/ + sampleId: dsmz_mutz-id:ACC 291 + urlPattern: http://www.be.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[{$id}] + sampleId: dsmz_mutz-id:ACC 291 + - created: 2019-06-11T14:16:39.763+0000 + deprecated: false + deprecationDate: + description: The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project. + id: 772 + mirId: MIR:00000263 + modified: 2019-06-11T14:16:39.763+0000 + name: HUGE + namespaceEmbeddedInLui: false + pattern: ^KIAA\d{4}$ + prefix: huge + resources: + - deprecated: false + deprecationDate: + description: HUGE at Kazusa DNA Research Institute + id: 774 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 773 + location: + countryCode: JP + countryName: Japan + name: Kazusa DNA Research Institute, Chiba + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100339 + name: HUGE at Kazusa DNA Research Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.kazusa.or.jp/huge/ + sampleId: KIAA0001 + urlPattern: http://www.kazusa.or.jp/huge/gfpage/{$id}/ + sampleId: KIAA0001 + - created: 2019-06-11T14:16:39.982+0000 + deprecated: false + deprecationDate: + description: BindingDB is the first public database of protein-small molecule affinity data. + id: 775 + mirId: MIR:00000264 + modified: 2019-06-11T14:16:39.982+0000 + name: BindingDB + namespaceEmbeddedInLui: false + pattern: ^\w\d+$ + prefix: bindingdb + resources: + - deprecated: false + deprecationDate: + description: BindingDB + id: 777 + institution: + description: >- + is a public research university in San Diego, California. + + Established in 1960 near the pre-existing Scripps Institution of Oceanography, UC San Diego is the seventh-oldest of the 10 University of California campuses and offers over 200 undergraduate and graduate degree programs, enrolling approximately 30,000 undergraduate and 8,500 graduate students. + homeUrl: https://ucsd.edu/ + id: 190 + location: + countryCode: US + countryName: United States + name: University of California, San Diego + rorId: https://ror.org/0168r3w48 + location: + countryCode: US + countryName: United States + mirId: MIR:00100340 + name: BindingDB + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.bindingdb.org + sampleId: e999 + urlPattern: http://www.bindingdb.org/compact/{$id} + sampleId: e999 + - created: 2019-06-11T14:16:45.247+0000 + deprecated: false + deprecationDate: + description: The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information. + id: 839 + mirId: MIR:00000286 + modified: 2019-06-11T14:16:45.247+0000 + name: Dictybase Gene + namespaceEmbeddedInLui: false + pattern: ^DDB_G\d+$ + prefix: dictybase.gene + resources: + - deprecated: false + deprecationDate: + description: Dictybase Gene at Northwestern University + id: 841 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 840 + location: + countryCode: US + countryName: United States + name: Northwestern University Biomedical Informatics Center and Center for Genetic Medicine, Chicago, Illinois + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100367 + name: Dictybase Gene at Northwestern University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://dictybase.org/ + sampleId: DDB_G0267522 + urlPattern: http://dictybase.org/gene/{$id} + sampleId: DDB_G0267522 + - created: 2019-06-11T14:16:40.213+0000 + deprecated: false + deprecationDate: + description: "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\r\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable." + id: 778 + mirId: MIR:00000265 + modified: 2019-06-11T14:16:40.213+0000 + name: STRING + namespaceEmbeddedInLui: false + pattern: ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$ + prefix: string + resources: + - deprecated: false + deprecationDate: + description: STRING at Heidelberg + id: 779 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 605 + location: + countryCode: DE + countryName: Germany + name: European Molecular Biology Laboratory, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100341 + name: STRING at Heidelberg + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://string.embl.de/ + sampleId: P53350 + urlPattern: http://string.embl.de/interactions/{$id} + - deprecated: false + deprecationDate: + description: STRING Mirror at Heidelberg + id: 780 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 605 + location: + countryCode: DE + countryName: Germany + name: European Molecular Biology Laboratory, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100342 + name: STRING Mirror at Heidelberg + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://string-db.org/ + sampleId: P53350 + urlPattern: http://string-db.org/interactions/{$id} + sampleId: P53350 + - created: 2019-06-11T14:16:40.524+0000 + deprecated: false + deprecationDate: + description: STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature. + id: 781 + mirId: MIR:00000266 + modified: 2019-06-11T14:16:40.524+0000 + name: STITCH + namespaceEmbeddedInLui: false + pattern: ^\w{14}$ + prefix: stitch + resources: + - deprecated: false + deprecationDate: + description: STITCH + id: 782 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 605 + location: + countryCode: DE + countryName: Germany + name: European Molecular Biology Laboratory, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100343 + name: STITCH + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://stitch.embl.de/ + sampleId: BQJCRHHNABKAKU + urlPattern: http://stitch.embl.de/interactions/{$id} + sampleId: BQJCRHHNABKAKU + - created: 2019-06-11T14:16:40.712+0000 + deprecated: false + deprecationDate: + description: The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use. + id: 783 + mirId: MIR:00000267 + modified: 2019-06-11T14:16:40.712+0000 + name: Anatomical Therapeutic Chemical Vetinary + namespaceEmbeddedInLui: false + pattern: ^Q[A-Z0-9]+$ + prefix: atcvet + resources: + - deprecated: false + deprecationDate: + description: Anatomical Therapeutic Chemical Vet Index at WHO + id: 784 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 295 + location: + countryCode: CH + countryName: Switzerland + name: World Health Organisation + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100344 + name: Anatomical Therapeutic Chemical Vet Index at WHO + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.whocc.no/atcvet/atcvet_index/ + sampleId: QJ51RV02 + urlPattern: http://www.whocc.no/atcvet/atcvet_index/?code={$id} + sampleId: QJ51RV02 + - created: 2019-06-11T14:16:40.928+0000 + deprecated: false + deprecationDate: + description: Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis. + id: 785 + mirId: MIR:00000268 + modified: 2019-06-11T14:16:40.928+0000 + name: Phenol-Explorer + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: phenolexplorer + resources: + - deprecated: false + deprecationDate: + description: Phenol-Explorer Database on Phenol content of foods + id: 787 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 786 + location: + countryCode: CA + countryName: Canada + name: INRA and University of Alberta + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100345 + name: Phenol-Explorer Database on Phenol content of foods + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.phenol-explorer.eu/foods/ + sampleId: '75' + urlPattern: http://phenol-explorer.eu/foods/{$id} + sampleId: '75' + - created: 2019-06-11T14:16:41.184+0000 + deprecated: false + deprecationDate: + description: SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc. + id: 788 + mirId: MIR:00000269 + modified: 2019-06-11T14:16:41.184+0000 + name: SNOMED CT + namespaceEmbeddedInLui: false + pattern: ^(\w+)?\d+$ + prefix: snomedct + resources: + - deprecated: false + deprecationDate: + description: SNOMED-CT at The National Pathology Exchange + id: 790 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 789 + location: + countryCode: GB + countryName: United Kingdom + name: The Health Informatics Service, NHS, West Yorkshire + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100405 + name: SNOMED-CT at The National Pathology Exchange + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.snomedbrowser.com/ + sampleId: '284196006' + urlPattern: http://www.snomedbrowser.com/Codes/Details/{$id} + sampleId: '284196006' + - created: 2019-06-11T14:16:41.417+0000 + deprecated: false + deprecationDate: + description: MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012. + id: 791 + mirId: MIR:00000270 + modified: 2019-06-11T14:16:41.417+0000 + name: MeSH 2012 + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9]+$ + prefix: mesh.2012 + resources: + - deprecated: false + deprecationDate: + description: MeSH at National Library of Medicine + id: 793 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 792 + location: + countryCode: US + countryName: United States + name: U.S. National Library of Medicine, National Institute of Health, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100349 + name: MeSH at National Library of Medicine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.nlm.nih.gov/mesh/ + sampleId: '17186' + urlPattern: http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index={$id}&view=expanded + sampleId: '17186' + - created: 2019-06-11T14:16:41.852+0000 + deprecated: false + deprecationDate: + description: The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN). + id: 797 + mirId: MIR:00000272 + modified: 2019-06-11T14:16:41.852+0000 + name: Canadian Drug Product Database + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: cdpd + resources: + - deprecated: false + deprecationDate: + description: Canadian Drug Identification Number at Health Canada + id: 799 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 798 + location: + countryCode: CA + countryName: Canada + name: Health Canada, Ottawa, Ontario + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100351 + name: Canadian Drug Identification Number at Health Canada + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://webprod3.hc-sc.gc.ca/dpd-bdpp/index-eng.jsp + sampleId: '63250' + urlPattern: http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code={$id} + sampleId: '63250' + - created: 2019-06-11T14:16:42.071+0000 + deprecated: false + deprecationDate: + description: MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da). + id: 800 + mirId: MIR:00000273 + modified: 2019-06-11T14:16:42.071+0000 + name: MassBank + namespaceEmbeddedInLui: false + pattern: ^[A-Z]{2}[A-Z0-9][0-9]{5}$ + prefix: massbank + resources: + - deprecated: false + deprecationDate: + description: MassBank in Japan + id: 802 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 801 + location: + countryCode: JP + countryName: Japan + name: The MassBank Consortium + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100353 + name: MassBank in Japan + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.massbank.jp + sampleId: PB000166 + urlPattern: http://www.massbank.jp/RecordDisplay?id={$id} + - deprecated: false + deprecationDate: + description: MassBank in Europe + id: 804 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 803 + location: + countryCode: DE + countryName: Germany + name: NORMAN Network and The MassBank Consortium + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100666 + name: MassBank in Europe + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://massbank.eu/ + sampleId: PB000166 + urlPattern: https://massbank.eu/MassBank/RecordDisplay?id={$id} + sampleId: PB000166 + - created: 2019-06-11T14:16:42.514+0000 + deprecated: false + deprecationDate: + description: Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena. + id: 805 + mirId: MIR:00000274 + modified: 2019-06-11T14:16:42.514+0000 + name: Golm Metabolome Database + namespaceEmbeddedInLui: false + pattern: ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ + prefix: gmd + resources: + - deprecated: false + deprecationDate: + description: Golm Metabolome Database at Max Planck Institute of Molecular Plant Physiology + id: 807 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 806 + location: + countryCode: DE + countryName: Germany + name: Max Planck Institute of Molecular Plant Physiology, Potsdam + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100354 + name: Golm Metabolome Database at Max Planck Institute of Molecular Plant Physiology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://gmd.mpimp-golm.mpg.de/ + sampleId: 68513255-fc44-4041-bc4b-4fd2fae7541d + urlPattern: http://gmd.mpimp-golm.mpg.de/Metabolites/{$id}.aspx + sampleId: 68513255-fc44-4041-bc4b-4fd2fae7541d + - created: 2019-06-11T14:16:42.733+0000 + deprecated: false + deprecationDate: + description: HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes. + id: 808 + mirId: MIR:00000275 + modified: 2019-06-11T14:16:42.733+0000 + name: HomoloGene + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: homologene + resources: + - deprecated: false + deprecationDate: + description: Homologene at NCBI + id: 809 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100355 + name: Homologene at NCBI + official: true + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/homologene/ + sampleId: '1000' + urlPattern: https://www.ncbi.nlm.nih.gov/homologene/{$id} + - deprecated: false + deprecationDate: + description: Bio2RDF + id: 810 + institution: + description: Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers. + homeUrl: https://bio2rdf.org + id: 33 + location: + countryCode: US + countryName: United States + name: Bio2RDF.org + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100699 + name: Bio2RDF + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://homologene.bio2rdf.org/fct + sampleId: '1000' + urlPattern: http://homologene.bio2rdf.org/describe/?url=http://bio2rdf.org/homologene:{$id} + sampleId: '1000' + - created: 2019-06-11T14:16:42.994+0000 + deprecated: false + deprecationDate: + description: The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information. + id: 811 + mirId: MIR:00000276 + modified: 2019-06-11T14:16:42.994+0000 + name: UM-BBD Compound + namespaceEmbeddedInLui: false + pattern: ^c\d+$ + prefix: umbbd.compound + resources: + - deprecated: false + deprecationDate: + description: Biocatalysis/Biodegradation Database Mirror (Compound) at ETH Zurich + id: 813 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 812 + location: + countryCode: CH + countryName: Switzerland + name: ETH, Zurich + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100357 + name: Biocatalysis/Biodegradation Database Mirror (Compound) at ETH Zurich + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://umbbd.ethz.ch/ + sampleId: c0001 + urlPattern: http://umbbd.ethz.ch/servlets/pageservlet?ptype=c&compID={$id} + sampleId: c0001 + - created: 2019-06-11T14:16:43.224+0000 + deprecated: false + deprecationDate: + description: The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography. + id: 814 + mirId: MIR:00000277 + modified: 2019-06-11T14:16:43.224+0000 + name: ABS + namespaceEmbeddedInLui: false + pattern: ^A\d+$ + prefix: abs + resources: + - deprecated: false + deprecationDate: + description: ABS at IMIM + id: 816 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 815 + location: + countryCode: ES + countryName: Spain + name: Institut Municipal d'Investigació Mèdica, Barcelona + rorId: + location: + countryCode: ES + countryName: Spain + mirId: MIR:00100358 + name: ABS at IMIM + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://genome.crg.es/datasets/abs2005/ + sampleId: A0014 + urlPattern: http://genome.crg.es/datasets/abs2005/entries/{$id}.html + sampleId: A0014 + - created: 2019-06-11T14:16:43.451+0000 + deprecated: false + deprecationDate: + description: The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides. + id: 817 + mirId: MIR:00000278 + modified: 2019-06-11T14:16:43.451+0000 + name: APD + namespaceEmbeddedInLui: false + pattern: ^\d{5}$ + prefix: apd + resources: + - deprecated: false + deprecationDate: + description: APD at Nebraska + id: 819 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 818 + location: + countryCode: US + countryName: United States + name: Eppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100359 + name: APD at Nebraska + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://aps.unmc.edu/AP/ + sampleId: '01001' + urlPattern: http://aps.unmc.edu/AP/database/query_output.php?ID={$id} + sampleId: '01001' + - created: 2019-06-11T14:16:43.696+0000 + deprecated: false + deprecationDate: + description: ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds. + id: 820 + mirId: MIR:00000279 + modified: 2019-06-11T14:16:43.696+0000 + name: ChemDB + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: chemdb + resources: + - deprecated: false + deprecationDate: + description: ChemDB at UC Irvine + id: 822 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 821 + location: + countryCode: US + countryName: United States + name: University of California, Irvine + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100360 + name: ChemDB at UC Irvine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://cdb.ics.uci.edu/ + sampleId: '3966782' + urlPattern: http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id={$id} + sampleId: '3966782' + - created: 2019-06-11T14:16:43.916+0000 + deprecated: false + deprecationDate: + description: Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene. + id: 823 + mirId: MIR:00000280 + modified: 2019-06-11T14:16:43.916+0000 + name: DPV + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: dpv + resources: + - deprecated: false + deprecationDate: + description: DPV at Rothamsted + id: 825 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 824 + location: + countryCode: GB + countryName: United Kingdom + name: Plant-Pathogen Interactions Division, Wheat Pathogenesis Programme, Rothamsted Research Harpenden, Hertfordshire + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100361 + name: DPV at Rothamsted + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.dpvweb.net/ + sampleId: '100' + urlPattern: http://www.dpvweb.net/dpv/showdpv.php?dpvno={$id} + sampleId: '100' + - created: 2019-06-11T14:16:44.139+0000 + deprecated: false + deprecationDate: + description: The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits. + id: 826 + mirId: MIR:00000281 + modified: 2019-06-11T14:16:44.139+0000 + name: IUPHAR receptor + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: iuphar.receptor + resources: + - deprecated: false + deprecationDate: + description: IUPHAR Receptor at University of Edinburgh + id: 828 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 827 + location: + countryCode: GB + countryName: United Kingdom + name: Centre for Cardiovascular Science, University of Edinburgh, Edinburgh + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100362 + name: IUPHAR Receptor at University of Edinburgh + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.guidetopharmacology.org/targets.jsp + sampleId: '101' + urlPattern: http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId={$id} + sampleId: '101' + - created: 2019-06-11T14:16:44.374+0000 + deprecated: false + deprecationDate: + description: AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression. + id: 829 + mirId: MIR:00000282 + modified: 2019-06-11T14:16:44.374+0000 + name: Aceview Worm + namespaceEmbeddedInLui: false + pattern: ^[a-z0-9-]+$ + prefix: aceview.worm + resources: + - deprecated: false + deprecationDate: + description: AceView Worm at NCBI + id: 830 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100363 + name: AceView Worm at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm + sampleId: aap-1 + urlPattern: https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l={$id} + sampleId: aap-1 + - created: 2019-06-11T14:16:45.469+0000 + deprecated: false + deprecationDate: + description: IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates. + id: 842 + mirId: MIR:00000287 + modified: 2019-06-11T14:16:45.469+0000 + name: IMGT LIGM + namespaceEmbeddedInLui: false + pattern: ^M\d+$ + prefix: imgt.ligm + resources: + - deprecated: false + deprecationDate: + description: IMGT LIGM through DKFZ (SRS) + id: 844 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 843 + location: + countryCode: DE + countryName: Germany + name: DKFZ TP3, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100369 + name: IMGT LIGM through DKFZ (SRS) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://genius.embnet.dkfz-heidelberg.de/ + sampleId: M94112 + urlPattern: http://genius.embnet.dkfz-heidelberg.de/menu/cgi-bin/srs7.1.3.1/wgetz?-id+4ktAl1fNMTA+-e+[IMGT:'{$id}'] + - deprecated: false + deprecationDate: + description: IMGT LIGM at CNRS + id: 846 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 845 + location: + countryCode: FR + countryName: France + name: CNRS, Montpellier University, Montpellier + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100428 + name: IMGT LIGM at CNRS + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.imgt.org/ + sampleId: M94112 + urlPattern: http://www.imgt.org/ligmdb/view?id={$id} + sampleId: M94112 + - created: 2019-06-11T14:16:45.846+0000 + deprecated: false + deprecationDate: + description: WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends). + id: 847 + mirId: MIR:00000288 + modified: 2019-06-11T14:16:45.846+0000 + name: Worfdb + namespaceEmbeddedInLui: false + pattern: ^\w+(\.\d+)? + prefix: worfdb + resources: + - deprecated: false + deprecationDate: + description: Worm Orf DB at Harvard + id: 849 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 848 + location: + countryCode: US + countryName: United States + name: Center for Cancer Systems Biology, Harvard Medical School, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100370 + name: Worm Orf DB at Harvard + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://worfdb.dfci.harvard.edu/ + sampleId: T01B6.1 + urlPattern: http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query={$id} + sampleId: T01B6.1 + - created: 2019-06-11T14:16:46.065+0000 + deprecated: false + deprecationDate: + description: NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones. + id: 850 + mirId: MIR:00000289 + modified: 2019-06-11T14:16:46.065+0000 + name: NEXTDB + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9]+$ + prefix: nextdb + resources: + - deprecated: false + deprecationDate: + description: NEXTDB at Shizuoka + id: 852 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 851 + location: + countryCode: JP + countryName: Japan + name: National Institute of Genetics, Shizuoka + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100371 + name: NEXTDB at Shizuoka + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://nematode.lab.nig.ac.jp/ + sampleId: 6b1 + urlPattern: http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone={$id} + sampleId: 6b1 + - created: 2019-06-11T14:16:46.310+0000 + deprecated: false + deprecationDate: + description: SoyBase is a repository for curated genetics, genomics and related data resources for soybean. + id: 853 + mirId: MIR:00000291 + modified: 2019-06-11T14:16:46.310+0000 + name: SoyBase + namespaceEmbeddedInLui: false + pattern: ^\w+(\-)?\w+(\-)?\w+$ + prefix: soybase + resources: + - deprecated: false + deprecationDate: + description: SoyBase at Iowa State University + id: 855 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 854 + location: + countryCode: US + countryName: United States + name: USDA-ARS-CICGRU, Iowa State University, Iowa + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100373 + name: SoyBase at Iowa State University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://soybase.org/ + sampleId: BARC-013845-01256 + urlPattern: http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term={$id} + sampleId: BARC-013845-01256 + - created: 2019-06-11T14:16:46.532+0000 + deprecated: false + deprecationDate: + description: HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries. + id: 856 + mirId: MIR:00000292 + modified: 2019-06-11T14:16:46.532+0000 + name: HAMAP + namespaceEmbeddedInLui: false + pattern: ^MF_\d+$ + prefix: hamap + resources: + - deprecated: false + deprecationDate: + description: HAPMAP at Swiss Institute of Bioinformatics + id: 857 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100374 + name: HAPMAP at Swiss Institute of Bioinformatics + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://hamap.expasy.org/ + sampleId: MF_01400 + urlPattern: https://hamap.expasy.org/unirule/{$id} + sampleId: MF_01400 + - created: 2019-06-11T14:16:46.721+0000 + deprecated: false + deprecationDate: + description: The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project. + id: 858 + mirId: MIR:00000293 + modified: 2019-06-11T14:16:46.721+0000 + name: Rouge + namespaceEmbeddedInLui: false + pattern: ^m\w+$ + prefix: rouge + resources: + - deprecated: false + deprecationDate: + description: Rouge at Kazusa DNA Research Institute + id: 860 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 859 + location: + countryCode: JP + countryName: Japan + name: Kazusa DNA Research Institute, Chiba + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100375 + name: Rouge at Kazusa DNA Research Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.kazusa.or.jp/rouge/ + sampleId: mKIAA4200 + urlPattern: http://www.kazusa.or.jp/rouge/gfpage/{$id}/ + sampleId: mKIAA4200 + - created: 2019-06-11T14:16:46.944+0000 + deprecated: false + deprecationDate: + description: ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results. + id: 861 + mirId: MIR:00000294 + modified: 2019-06-11T14:16:46.944+0000 + name: ArrayExpress Platform + namespaceEmbeddedInLui: false + pattern: ^[AEP]-\w{4}-\d+$ + prefix: arrayexpress.platform + resources: + - deprecated: false + deprecationDate: + description: ArrayExpress Platform at EBI + id: 862 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100376 + name: ArrayExpress Platform at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/arrayexpress/ + sampleId: A-GEOD-50 + urlPattern: https://www.ebi.ac.uk/arrayexpress/arrays/{$id} + sampleId: A-GEOD-50 + - created: 2019-06-11T14:16:47.138+0000 + deprecated: false + deprecationDate: + description: The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature. + id: 863 + mirId: MIR:00000295 + modified: 2019-06-11T14:16:47.138+0000 + name: CGSC Strain + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: cgsc + resources: + - deprecated: false + deprecationDate: + description: CGSC at Yale university + id: 865 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 864 + location: + countryCode: US + countryName: United States + name: Dept. of Molecular, Cellular, and Developmental Biology, Yale University, Conneticut + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100377 + name: CGSC at Yale university + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://cgsc.biology.yale.edu/index.php + sampleId: '74' + urlPattern: http://cgsc.biology.yale.edu/Site.php?ID={$id} + sampleId: '74' + - created: 2019-06-11T14:16:47.375+0000 + deprecated: false + deprecationDate: + description: DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information. + id: 866 + mirId: MIR:00000297 + modified: 2019-06-11T14:16:47.375+0000 + name: DragonDB DNA + namespaceEmbeddedInLui: false + pattern: ^\d\w+$ + prefix: dragondb.dna + resources: + - deprecated: false + deprecationDate: + description: DragonDB DNA at University of British Columbia + id: 868 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 867 + location: + countryCode: CA + countryName: Canada + name: University of British Columbia, Vancouver + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100379 + name: DragonDB DNA at University of British Columbia + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.antirrhinum.net/ + sampleId: 3hB06 + urlPattern: http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name={$id};class=DNA + sampleId: 3hB06 + - created: 2019-06-11T14:16:47.607+0000 + deprecated: false + deprecationDate: + description: DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information. + id: 869 + mirId: MIR:00000298 + modified: 2019-06-11T14:16:47.607+0000 + name: DragonDB Protein + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: dragondb.protein + resources: + - deprecated: false + deprecationDate: + description: DragonDB Protein at University of British Columbia + id: 870 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 867 + location: + countryCode: CA + countryName: Canada + name: University of British Columbia, Vancouver + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100380 + name: DragonDB Protein at University of British Columbia + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.antirrhinum.net/ + sampleId: AMDEFA + urlPattern: http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name={$id};class=Peptide + sampleId: AMDEFA + - created: 2019-06-11T14:16:47.798+0000 + deprecated: false + deprecationDate: + description: DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information. + id: 871 + mirId: MIR:00000299 + modified: 2019-06-11T14:16:47.798+0000 + name: DragonDB Locus + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: dragondb.locus + resources: + - deprecated: false + deprecationDate: + description: DragonDB Locus at University of British Columbia + id: 872 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 867 + location: + countryCode: CA + countryName: Canada + name: University of British Columbia, Vancouver + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100381 + name: DragonDB Locus at University of British Columbia + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.antirrhinum.net/ + sampleId: DEF + urlPattern: http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name={$id}&class=Locus + sampleId: DEF + - created: 2019-06-11T14:16:47.981+0000 + deprecated: false + deprecationDate: + description: DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information. + id: 873 + mirId: MIR:00000300 + modified: 2019-06-11T14:16:47.981+0000 + name: DragonDB Allele + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: dragondb.allele + resources: + - deprecated: false + deprecationDate: + description: DragonDB Allele at University of British Columbia + id: 874 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 867 + location: + countryCode: CA + countryName: Canada + name: University of British Columbia, Vancouver + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100382 + name: DragonDB Allele at University of British Columbia + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.antirrhinum.net/ + sampleId: cho + urlPattern: http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name={$id}&class=Allele + sampleId: cho + - created: 2019-06-11T14:16:48.189+0000 + deprecated: false + deprecationDate: + description: The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books. + id: 875 + mirId: MIR:00000301 + modified: 2019-06-11T14:16:48.189+0000 + name: ISSN + namespaceEmbeddedInLui: false + pattern: ^\d{4}-\d{3}[\dX]$ + prefix: issn + resources: + - deprecated: false + deprecationDate: + description: ISSN at Library of Congress + id: 877 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 876 + location: + countryCode: US + countryName: United States + name: Library of Congress Online Catalogue, Washington DC + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100383 + name: ISSN at Library of Congress + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://catalog.loc.gov/webvoy.htm + sampleId: 0745-4570 + urlPattern: https://catalog.loc.gov/vwebv/search?searchCode=STNO&searchArg={$id}&searchType=1&recCount=25 + - deprecated: false + deprecationDate: + description: ISSN Portal + id: 879 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 878 + location: + countryCode: FR + countryName: France + name: ISSN International Centre, Paris + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100924 + name: ISSN Portal + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://portal.issn.org + sampleId: 1776-3045 + urlPattern: https://portal.issn.org/resource/ISSN/{$id} + sampleId: 0745-4570 + - created: 2019-06-11T14:16:48.579+0000 + deprecated: false + deprecationDate: + description: The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families. + id: 880 + mirId: MIR:00000302 + modified: 2019-06-11T14:16:48.579+0000 + name: MEROPS Family + namespaceEmbeddedInLui: false + pattern: ^[SCTAGMNU]\d+$ + prefix: merops.family + resources: + - deprecated: false + deprecationDate: + description: Merops Family at Sanger Institute + id: 881 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 482 + location: + countryCode: GB + countryName: United Kingdom + name: Wellcome Trust Sanger Institute, Hinxton + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100384 + name: Merops Family at Sanger Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://merops.sanger.ac.uk/index.htm + sampleId: S1 + urlPattern: http://merops.sanger.ac.uk/cgi-bin/famsum?family={$id} + sampleId: S1 + - created: 2019-06-11T14:16:48.772+0000 + deprecated: false + deprecationDate: + description: The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data. + id: 882 + mirId: MIR:00000303 + modified: 2019-06-11T14:16:48.772+0000 + name: MGED Ontology + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: mo + resources: + - deprecated: false + deprecationDate: + description: MGED Ontology at BioPortal + id: 883 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 571 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford University + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100385 + name: MGED Ontology at BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ + sampleId: ArrayGroup + urlPattern: http://purl.bioontology.org/ontology/MO/{$id} + - deprecated: false + deprecationDate: + description: MGED Ontology at SourceForge + id: 885 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 884 + location: + countryCode: GB + countryName: United Kingdom + name: (Ontology Working Group), European Bioinformatics Institute, Hinxton, Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100568 + name: MGED Ontology at SourceForge + official: false + providerCode: ebi + resourceHomeUrl: https://mged.sourceforge.net/ontologies/MGEDontology.php + sampleId: ArrayGroup + urlPattern: https://mged.sourceforge.net/ontologies/MGEDontology.php#{$id} + sampleId: ArrayGroup + - created: 2019-06-11T14:16:49.131+0000 + deprecated: false + deprecationDate: + description: The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community. + id: 886 + mirId: MIR:00000304 + modified: 2019-06-11T14:16:49.131+0000 + name: NASC code + namespaceEmbeddedInLui: false + pattern: ^(\w+)?\d+$ + prefix: nasc + resources: + - deprecated: false + deprecationDate: + description: NASC at University of Nottingham + id: 888 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 887 + location: + countryCode: GB + countryName: United Kingdom + name: The Nottingham Arabidopsis Stock Centre, University of Nottingham + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100386 + name: NASC at University of Nottingham + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://arabidopsis.info/ + sampleId: N1899 + urlPattern: http://arabidopsis.info/StockInfo?NASC_id={$id} + sampleId: N1899 + - created: 2019-06-11T14:16:49.376+0000 + deprecated: false + deprecationDate: + description: A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones. + id: 889 + mirId: MIR:00000305 + modified: 2019-06-11T14:16:49.376+0000 + name: NIAEST + namespaceEmbeddedInLui: false + pattern: ^\w\d{4}\w\d{2}(\-[35])?$ + prefix: niaest + resources: + - deprecated: false + deprecationDate: + description: NIAEST at National Institute on Aging + id: 891 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 890 + location: + countryCode: US + countryName: United States + name: National Institute on Aging, NIH + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100387 + name: NIAEST at National Institute on Aging + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://lgsun.grc.nia.nih.gov/cDNA/ + sampleId: J0705A10 + urlPattern: http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1={$id} + sampleId: J0705A10 + - created: 2019-06-11T14:16:49.605+0000 + deprecated: false + deprecationDate: + description: The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors. + id: 892 + mirId: MIR:00000306 + modified: 2019-06-11T14:16:49.605+0000 + name: Pazar Transcription Factor + namespaceEmbeddedInLui: false + pattern: ^TF\w+$ + prefix: pazar + resources: + - deprecated: false + deprecationDate: + description: Pazar Transcription Factor at University of British Columbia + id: 894 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 893 + location: + countryCode: CA + countryName: Canada + name: Centre for Molecular Medicine and Therapeutics, University of British Columbia, Vancouver + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100388 + name: Pazar Transcription Factor at University of British Columbia + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.pazar.info/ + sampleId: TF0001053 + urlPattern: http://www.pazar.info/cgi-bin/tf_search.cgi?geneID={$id} + sampleId: TF0001053 + - created: 2019-06-11T14:16:49.830+0000 + deprecated: false + deprecationDate: + description: The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. + id: 895 + mirId: MIR:00000307 + modified: 2019-06-11T14:16:49.830+0000 + name: Plant Ontology + namespaceEmbeddedInLui: true + pattern: ^PO:\d+$ + prefix: po + resources: + - deprecated: false + deprecationDate: + description: Plant Ontology through Amigo + id: 897 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 896 + location: + countryCode: US + countryName: United States + name: Cold Spring Harbor Laboratory, Cold Spring Harbor, New York + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100389 + name: Plant Ontology through Amigo + official: false + providerCode: amigo + resourceHomeUrl: http://www.plantontology.org/ + sampleId: '0009089' + urlPattern: http://www.plantontology.org/amigo/go.cgi?view=details&query=PO:{$id} + - deprecated: false + deprecationDate: + description: Plant Ontology through BioPortal + id: 898 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100390 + name: Plant Ontology through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/PO + sampleId: '0009089' + urlPattern: http://purl.bioontology.org/ontology/PO/PO:{$id} + - deprecated: false + deprecationDate: + description: Plant Ontology through OLS + id: 899 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100676 + name: Plant Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/po + sampleId: '0009089' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/po/terms?obo_id=PO:{$id} + sampleId: '0009089' + - created: 2019-06-11T14:16:50.326+0000 + deprecated: false + deprecationDate: + description: The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA. + id: 900 + mirId: MIR:00000308 + modified: 2019-06-11T14:16:50.326+0000 + name: RNA Modification Database + namespaceEmbeddedInLui: false + pattern: ^\d{3}$ + prefix: rnamods + resources: + - deprecated: false + deprecationDate: + description: RNA Modification Database at University of Utah + id: 902 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 901 + location: + countryCode: US + countryName: United States + name: Department of Medicinal Chemistry and Department of Biochemistry, University of Utah, Salt Lake City, Utah + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100391 + name: RNA Modification Database at University of Utah + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://rna-mdb.cas.albany.edu/RNAmods/rnaover.htm + sampleId: '101' + urlPattern: http://mods.rna.albany.edu/mods/modifications/view/{$id} + sampleId: '101' + - created: 2019-06-11T14:16:50.556+0000 + deprecated: false + deprecationDate: + description: TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc. + id: 903 + mirId: MIR:00000312 + modified: 2019-06-11T14:16:50.556+0000 + name: TreeBASE + namespaceEmbeddedInLui: false + pattern: ^TB[1,2]?:[A-Z][a-z]?\d+$ + prefix: treebase + resources: + - deprecated: false + deprecationDate: + description: TreeBASE (hosted at National Evolutionary Synthesis Center) + id: 905 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 904 + location: + countryCode: US + countryName: United States + name: Phyloinformatics Research Foundation, Durham, North Carolina + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100395 + name: TreeBASE (hosted at National Evolutionary Synthesis Center) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://treebase.org/ + sampleId: TB2:S1000 + urlPattern: http://purl.org/phylo/treebase/phylows/study/{$id}?format=html + sampleId: TB2:S1000 + - created: 2019-06-11T14:17:18.559+0000 + deprecated: false + deprecationDate: + description: Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products. + id: 1235 + mirId: MIR:00000430 + modified: 2019-06-11T14:17:18.559+0000 + name: Cell Signaling Technology Antibody + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: cst.ab + resources: + - deprecated: false + deprecationDate: + description: CST Antibody at Cell Signaling Technology + id: 1236 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1233 + location: + countryCode: US + countryName: United States + name: Cell Signaling Technology, Inc., Danvers, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100553 + name: CST Antibody at Cell Signaling Technology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.cellsignal.com/catalog/index.html + sampleId: '3305' + urlPattern: http://www.cellsignal.com/products/{$id}.html + sampleId: '3305' + - created: 2019-06-11T14:16:50.779+0000 + deprecated: false + deprecationDate: + description: The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature. + id: 906 + mirId: MIR:00000313 + modified: 2019-06-11T14:16:50.779+0000 + name: Tetrahymena Genome Database + namespaceEmbeddedInLui: false + pattern: ^TTHERM\_\d+$ + prefix: tgd + resources: + - deprecated: false + deprecationDate: + description: TGD at Stanford University + id: 907 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 298 + location: + countryCode: US + countryName: United States + name: Department of Genetics, School of Medicine, Stanford University, Stanford, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100396 + name: TGD at Stanford University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ciliate.org/index.php/ + sampleId: TTHERM_00648910 + urlPattern: http://ciliate.org/index.php/feature/details/{$id} + sampleId: TTHERM_00648910 + - created: 2019-06-11T14:16:50.975+0000 + deprecated: false + deprecationDate: + description: TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins. + id: 908 + mirId: MIR:00000315 + modified: 2019-06-11T14:16:50.975+0000 + name: TIGRFAMS + namespaceEmbeddedInLui: false + pattern: ^TIGR\d+$ + prefix: tigrfam + resources: + - deprecated: false + deprecationDate: + description: TIGRFAM at JCVI + id: 910 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 909 + location: + countryCode: US + countryName: United States + name: The Institute for Genomic Research, Rockville, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100398 + name: TIGRFAM at JCVI + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.jcvi.org/cgi-bin/tigrfams/Listing.cgi + sampleId: TIGR00010 + urlPattern: http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc={$id} + sampleId: TIGR00010 + - created: 2019-06-11T14:16:51.241+0000 + deprecated: false + deprecationDate: + description: The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found. + id: 911 + mirId: MIR:00000316 + modified: 2019-06-11T14:16:51.241+0000 + name: Animal TFDB Family + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: atfdb.family + resources: + - deprecated: false + deprecationDate: + description: Animal TFDB at Hubei Bioinformatics & Molecular Imaging Key Laboratory + id: 913 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 912 + location: + countryCode: CN + countryName: China + name: Hubei Bioinformatics and Molecular Imaging Key Laboratory, Wuhan + rorId: + location: + countryCode: CN + countryName: China + mirId: MIR:00100399 + name: Animal TFDB at Hubei Bioinformatics & Molecular Imaging Key Laboratory + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.bioguo.org/AnimalTFDB/family_index.php + sampleId: CUT + urlPattern: http://www.bioguo.org/AnimalTFDB/family.php?fam={$id} + sampleId: CUT + - created: 2019-06-11T14:16:51.481+0000 + deprecated: false + deprecationDate: + description: The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits. + id: 914 + mirId: MIR:00000317 + modified: 2019-06-11T14:16:51.481+0000 + name: IUPHAR family + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: iuphar.family + resources: + - deprecated: false + deprecationDate: + description: The IUPHAR/BPS Guide to PHARMACOLOGY + id: 916 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 915 + location: + countryCode: GB + countryName: United Kingdom + name: International Union of Pharmacology, Edinburgh + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100708 + name: The IUPHAR/BPS Guide to PHARMACOLOGY + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.guidetopharmacology.org/ + sampleId: '78' + urlPattern: http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId={$id} + sampleId: '78' + - created: 2019-06-11T14:16:51.708+0000 + deprecated: false + deprecationDate: + description: The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank. + id: 917 + mirId: MIR:00000318 + modified: 2019-06-11T14:16:51.708+0000 + name: DBG2 Introns + namespaceEmbeddedInLui: false + pattern: ^\w{1,2}\.(\w{1,2}\.)?[A-Za-z0-9]+$ + prefix: dbg2introns + resources: + - deprecated: false + deprecationDate: + description: Bacterial Group II Introns at University of Calgary + id: 919 + institution: + description: The University of Calgary is one of Canadaā€™s top comprehensive research universities, combining the best of university tradition with the city of Calgaryā€™s vibrant energy and diversity. + homeUrl: https://www.ucalgary.ca/ + id: 568 + location: + countryCode: CA + countryName: Canada + name: University of Calgary + rorId: https://ror.org/03yjb2x39 + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100401 + name: Bacterial Group II Introns at University of Calgary + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://webapps2.ucalgary.ca/~groupii/ + sampleId: Cu.me.I1 + urlPattern: http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name={$id} + sampleId: Cu.me.I1 + - created: 2019-06-11T14:16:51.940+0000 + deprecated: false + deprecationDate: + description: The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra. + id: 920 + mirId: MIR:00000319 + modified: 2019-06-11T14:16:51.940+0000 + name: Spectral Database for Organic Compounds + namespaceEmbeddedInLui: false + pattern: \d+$ + prefix: sdbs + resources: + - deprecated: false + deprecationDate: + description: SDBS at AIST + id: 922 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 921 + location: + countryCode: JP + countryName: Japan + name: National Institute of Advanced Industrial Science and Technology (AIST) + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100402 + name: SDBS at AIST + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/direct_frame_top.cgi + sampleId: '4544' + urlPattern: http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno={$id} + sampleId: '4544' + - created: 2019-06-11T14:16:52.167+0000 + deprecated: false + deprecationDate: + description: The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes. + id: 923 + mirId: MIR:00000320 + modified: 2019-06-11T14:16:52.167+0000 + name: Vbase2 + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: vbase2 + resources: + - deprecated: false + deprecationDate: + description: Vbase2 at German Research Centre for Biotechnology + id: 925 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 924 + location: + countryCode: DE + countryName: Germany + name: Department of Experimental Immunology, German Research Centre for Biotechnology, Braunschweig + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100403 + name: Vbase2 at German Research Centre for Biotechnology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.vbase2.org/vbase2.php + sampleId: humIGHV025 + urlPattern: http://www.vbase2.org/vgene.php?id={$id} + sampleId: humIGHV025 + - created: 2019-06-11T14:16:52.396+0000 + deprecated: false + deprecationDate: + description: SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps. + id: 926 + mirId: MIR:00000321 + modified: 2019-06-11T14:16:52.396+0000 + name: SPIKE Map + namespaceEmbeddedInLui: false + pattern: ^spike\d{5}$ + prefix: spike.map + resources: + - deprecated: false + deprecationDate: + description: SPIKE database at Tel Aviv University + id: 928 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 927 + location: + countryCode: IL + countryName: Israel + name: School of Computer Sciences and School of Medicine, Tel Aviv University + rorId: + location: + countryCode: IL + countryName: Israel + mirId: MIR:00100404 + name: SPIKE database at Tel Aviv University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.cs.tau.ac.il/~spike/ + sampleId: spike00001 + urlPattern: http://www.cs.tau.ac.il/~spike/maps/{$id}.html + sampleId: spike00001 + - created: 2019-06-11T14:16:52.640+0000 + deprecated: false + deprecationDate: + description: The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry. + id: 929 + mirId: MIR:00000322 + modified: 2019-06-11T14:16:52.640+0000 + name: METLIN + namespaceEmbeddedInLui: false + pattern: ^\d{4}$ + prefix: metlin + resources: + - deprecated: false + deprecationDate: + description: METLIN at Scripps Center, Molecular Biology and Center for Mass Spectrometry, La Jolla + id: 931 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 930 + location: + countryCode: US + countryName: United States + name: Scripps Research Institute, San Diego + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100406 + name: METLIN at Scripps Center, Molecular Biology and Center for Mass Spectrometry, La Jolla + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://masspec.scripps.edu/ + sampleId: '1455' + urlPattern: http://metlin.scripps.edu/metabo_info.php?molid={$id} + sampleId: '1455' + - created: 2019-06-11T14:16:52.858+0000 + deprecated: false + deprecationDate: + description: The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene. + id: 932 + mirId: MIR:00000323 + modified: 2019-06-11T14:16:52.858+0000 + name: GeneCards + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z-0-9_]+(\@)?$ + prefix: genecards + resources: + - deprecated: false + deprecationDate: + description: GeneCards at Weizmann Institute + id: 934 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 933 + location: + countryCode: IL + countryName: Israel + name: Department of Molecular Genetics, Weizmann Institute of Science, Rehovot + rorId: + location: + countryCode: IL + countryName: Israel + mirId: MIR:00100407 + name: GeneCards at Weizmann Institute + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.genecards.org/ + sampleId: ABL1 + urlPattern: https://www.genecards.org/cgi-bin/carddisp.pl?gene={$id} + sampleId: ABL1 + - created: 2019-06-11T14:16:53.082+0000 + deprecated: false + deprecationDate: + description: The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections. + id: 935 + mirId: MIR:00000324 + modified: 2019-06-11T14:16:53.082+0000 + name: MMRRC + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: mmrrc + resources: + - deprecated: false + deprecationDate: + description: MMRRC at University of North Carolina + id: 937 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 936 + location: + countryCode: US + countryName: United States + name: University of North Carolina + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100414 + name: MMRRC at University of North Carolina + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.mmrrc.org/ + sampleId: '70' + urlPattern: http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id={$id} + sampleId: '70' + - created: 2019-06-11T14:16:53.335+0000 + deprecated: false + deprecationDate: + description: The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information. + id: 938 + mirId: MIR:00000325 + modified: 2019-06-11T14:16:53.335+0000 + name: UM-BBD Reaction + namespaceEmbeddedInLui: false + pattern: ^r\d+$ + prefix: umbbd.reaction + resources: + - deprecated: false + deprecationDate: + description: Biocatalysis/Biodegradation Database Mirror (Reaction) at ETH Zurich + id: 939 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 812 + location: + countryCode: CH + countryName: Switzerland + name: ETH, Zurich + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100416 + name: Biocatalysis/Biodegradation Database Mirror (Reaction) at ETH Zurich + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://umbbd.ethz.ch/ + sampleId: r0001 + urlPattern: http://umbbd.ethz.ch/servlets/pageservlet?ptype=r&reacID={$id} + sampleId: r0001 + - created: 2019-06-11T14:16:53.546+0000 + deprecated: false + deprecationDate: + description: The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information. + id: 940 + mirId: MIR:00000326 + modified: 2019-06-11T14:16:53.546+0000 + name: UM-BBD Enzyme + namespaceEmbeddedInLui: false + pattern: ^e\d+$ + prefix: umbbd.enzyme + resources: + - deprecated: false + deprecationDate: + description: Biocatalysis/Biodegradation Database Mirror (Enzyme) at ETH Zurich + id: 941 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 812 + location: + countryCode: CH + countryName: Switzerland + name: ETH, Zurich + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100418 + name: Biocatalysis/Biodegradation Database Mirror (Enzyme) at ETH Zurich + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://umbbd.ethz.ch/ + sampleId: e0333 + urlPattern: http://umbbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID={$id} + sampleId: e0333 + - created: 2019-06-11T14:16:53.741+0000 + deprecated: false + deprecationDate: + description: The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information. + id: 942 + mirId: MIR:00000327 + modified: 2019-06-11T14:16:53.741+0000 + name: UM-BBD Pathway + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: umbbd.pathway + resources: + - deprecated: false + deprecationDate: + description: Biocatalysis/Biodegradation Database Mirror (Pathway) at ETH Zurich + id: 943 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 812 + location: + countryCode: CH + countryName: Switzerland + name: ETH, Zurich + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100420 + name: Biocatalysis/Biodegradation Database Mirror (Pathway) at ETH Zurich + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://umbbd.ethz.ch/ + sampleId: ala + urlPattern: http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr={$id} + sampleId: ala + - created: 2019-06-11T14:16:53.927+0000 + deprecated: false + deprecationDate: + description: The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules. + id: 944 + mirId: MIR:00000328 + modified: 2019-06-11T14:16:53.927+0000 + name: UM-BBD Biotransformation Rule + namespaceEmbeddedInLui: false + pattern: ^bt\d+$ + prefix: umbbd.rule + resources: + - deprecated: false + deprecationDate: + description: Biocatalysis/Biodegradation Database Mirror (Biotransformation Rule) at ETH Zurich + id: 945 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 812 + location: + countryCode: CH + countryName: Switzerland + name: ETH, Zurich + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100421 + name: Biocatalysis/Biodegradation Database Mirror (Biotransformation Rule) at ETH Zurich + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://umbbd.ethz.ch/servlets/pageservlet?ptype=allrules + sampleId: bt0001 + urlPattern: http://www.umbbd.ethz.ch/servlets/rule.jsp?rule={$id} + sampleId: bt0001 + - created: 2019-06-11T14:16:54.147+0000 + deprecated: false + deprecationDate: + description: mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RTā€“qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages. + id: 946 + mirId: MIR:00000329 + modified: 2019-06-11T14:16:54.147+0000 + name: mirEX + namespaceEmbeddedInLui: false + pattern: ^\d+(\w+)?$ + prefix: mirex + resources: + - deprecated: false + deprecationDate: + description: mirEX at Adam Mickiewicz University + id: 947 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 731 + location: + countryCode: PL + countryName: Poland + name: Institute of Molecular Biology, Adam Mickiewicz University, Poznan + rorId: + location: + countryCode: PL + countryName: Poland + mirId: MIR:00100423 + name: mirEX at Adam Mickiewicz University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://comgen.pl/mirex/?page=home + sampleId: 165a + urlPattern: http://comgen.pl/mirex1/?page=results/record&name={$id}&exref=pp2a&limit=yes + sampleId: 165a + - created: 2019-06-11T14:16:54.345+0000 + deprecated: false + deprecationDate: + description: The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information. + id: 948 + mirId: MIR:00000330 + modified: 2019-06-11T14:16:54.345+0000 + name: Dictybase EST + namespaceEmbeddedInLui: false + pattern: ^DDB\d+$ + prefix: dictybase.est + resources: + - deprecated: false + deprecationDate: + description: Dictybase Gene at Northwestern University + id: 949 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 840 + location: + countryCode: US + countryName: United States + name: Northwestern University Biomedical Informatics Center and Center for Genetic Medicine, Chicago, Illinois + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100424 + name: Dictybase Gene at Northwestern University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://dictybase.org/ + sampleId: DDB0016567 + urlPattern: http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id={$id} + sampleId: DDB0016567 + - created: 2019-06-11T14:18:08.223+0000 + deprecated: false + deprecationDate: + description: MobiDB is a database of protein disorder and mobility annotations. + id: 1768 + mirId: MIR:00000637 + modified: 2019-06-11T14:18:08.223+0000 + name: MobiDB + namespaceEmbeddedInLui: false + pattern: ^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$ + prefix: mobidb + resources: + - deprecated: false + deprecationDate: + description: MobiDB + id: 1770 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1769 + location: + countryCode: IT + countryName: Italy + name: University of Padua + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00100842 + name: MobiDB + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://mobidb.bio.unipd.it + sampleId: P10636 + urlPattern: http://mobidb.bio.unipd.it/{$id} + sampleId: P10636 + - created: 2019-06-11T14:16:54.535+0000 + deprecated: false + deprecationDate: + description: IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature. + id: 950 + mirId: MIR:00000331 + modified: 2019-06-11T14:16:54.535+0000 + name: IMGT HLA + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9*:]+$ + prefix: imgt.hla + resources: + - deprecated: false + deprecationDate: + description: IMGT HLA at EBI + id: 951 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100425 + name: IMGT HLA at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/imgt/hla/allele.html + sampleId: A*01:01:01:01 + urlPattern: https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?{$id} + sampleId: A*01:01:01:01 + - created: 2019-06-11T14:16:54.741+0000 + deprecated: false + deprecationDate: + description: The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research. + id: 952 + mirId: MIR:00000332 + modified: 2019-06-11T14:16:54.741+0000 + name: Bloomington Drosophila Stock Center + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: bdsc + resources: + - deprecated: false + deprecationDate: + description: BDSC at Indiana University + id: 954 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 953 + location: + countryCode: US + countryName: United States + name: Department of Biology, Indiana University, Bloomington + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100426 + name: BDSC at Indiana University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://bdsc.indiana.edu/about/mission.html + sampleId: '33607' + urlPattern: https://bdsc.indiana.edu/stocks/{$id} + sampleId: '33607' + - created: 2019-06-11T14:16:54.970+0000 + deprecated: false + deprecationDate: + description: The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization. + id: 955 + mirId: MIR:00000333 + modified: 2019-06-11T14:16:54.970+0000 + name: OPM + namespaceEmbeddedInLui: false + pattern: ^[0-9][A-Za-z0-9]{3}$ + prefix: opm + resources: + - deprecated: false + deprecationDate: + description: OPM at University of Michigan + id: 957 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 956 + location: + countryCode: US + countryName: United States + name: Department of Medicinal Chemistry, College of Pharmacy, University of Michigan + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100427 + name: OPM at University of Michigan + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://opm.phar.umich.edu/ + sampleId: 1h68 + urlPattern: http://opm.phar.umich.edu/protein.php?pdbid={$id} + sampleId: 1h68 + - created: 2019-06-11T14:16:55.214+0000 + deprecated: false + deprecationDate: + description: Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources. + id: 958 + mirId: MIR:00000334 + modified: 2019-06-11T14:16:55.214+0000 + name: Allergome + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: allergome + resources: + - deprecated: false + deprecationDate: + description: Allergome at Rome + id: 960 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 959 + location: + countryCode: IT + countryName: Italy + name: Center for Clinical and Experimental Allergology, Rome + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00100429 + name: Allergome at Rome + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.allergome.org/ + sampleId: '1948' + urlPattern: http://www.allergome.org/script/dettaglio.php?id_molecule={$id} + sampleId: '1948' + - created: 2019-06-11T14:16:55.438+0000 + deprecated: false + deprecationDate: + description: PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets. + id: 961 + mirId: MIR:00000335 + modified: 2019-06-11T14:16:55.438+0000 + name: PomBase + namespaceEmbeddedInLui: false + pattern: ^S\w+(\.)?\w+(\.)?$ + prefix: pombase + resources: + - deprecated: false + deprecationDate: + description: PomBase at University of Cambridge + id: 963 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 962 + location: + countryCode: GB + countryName: United Kingdom + name: Cambridge Systems Biology Centre, Department of Biochemistry, University of Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100430 + name: PomBase at University of Cambridge + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.pombase.org/ + sampleId: SPCC13B11.01 + urlPattern: http://www.pombase.org/spombe/result/{$id} + sampleId: SPCC13B11.01 + - created: 2019-06-11T14:16:55.662+0000 + deprecated: false + deprecationDate: + description: The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers. + id: 964 + mirId: MIR:00000336 + modified: 2019-06-11T14:16:55.662+0000 + name: HPA + namespaceEmbeddedInLui: false + pattern: ^ENSG\d{11}$ + prefix: hpa + resources: + - deprecated: false + deprecationDate: + description: Human Protein Atlas at AlbaNova University + id: 966 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 965 + location: + countryCode: SE + countryName: Sweden + name: Department of Proteomics, School of Biotechnology, AlbaNova University Center, Stockholm + rorId: + location: + countryCode: SE + countryName: Sweden + mirId: MIR:00100431 + name: Human Protein Atlas at AlbaNova University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.proteinatlas.org/ + sampleId: ENSG00000026508 + urlPattern: http://www.proteinatlas.org/{$id} + sampleId: ENSG00000026508 + - created: 2019-06-11T14:16:55.877+0000 + deprecated: false + deprecationDate: + description: JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory. + id: 967 + mirId: MIR:00000337 + modified: 2019-06-11T14:16:55.877+0000 + name: JAX Mice + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: jaxmice + resources: + - deprecated: false + deprecationDate: + description: JAX Mice at Jackson Laboratory + id: 969 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 968 + location: + countryCode: US + countryName: United States + name: The Jackson Laboratory, Sacremento, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100432 + name: JAX Mice at Jackson Laboratory + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://jaxmice.jax.org/ + sampleId: '005012' + urlPattern: http://jaxmice.jax.org/strain/{$id}.html + sampleId: '005012' + - created: 2019-06-11T14:16:56.122+0000 + deprecated: false + deprecationDate: + description: NameBank is a "biological name server" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context. + id: 970 + mirId: MIR:00000338 + modified: 2019-06-11T14:16:56.122+0000 + name: uBio NameBank + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: ubio.namebank + resources: + - deprecated: false + deprecationDate: + description: uBio NameBank at The Marine Biological Laboratory + id: 972 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 971 + location: + countryCode: US + countryName: United States + name: Marine Biological Laboratory, Woods Hole, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100433 + name: uBio NameBank at The Marine Biological Laboratory + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.ubio.org + sampleId: '2555646' + urlPattern: http://www.ubio.org/browser/details.php?namebankID={$id} + sampleId: '2555646' + - created: 2019-06-11T14:16:56.366+0000 + deprecated: false + deprecationDate: + description: The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats. + id: 973 + mirId: MIR:00000339 + modified: 2019-06-11T14:16:56.366+0000 + name: YeTFasCo + namespaceEmbeddedInLui: false + pattern: ^\w+\_\d+(\.\d+)?$ + prefix: yetfasco + resources: + - deprecated: false + deprecationDate: + description: YeTFasCo at University of Toronto + id: 975 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 974 + location: + countryCode: CA + countryName: Canada + name: Department of Molecular Genetics, Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100434 + name: YeTFasCo at University of Toronto + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://yetfasco.ccbr.utoronto.ca/ + sampleId: YOR172W_571.0 + urlPattern: http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot={$id} + sampleId: YOR172W_571.0 + - created: 2019-06-11T14:16:56.599+0000 + deprecated: false + deprecationDate: + description: TarBase stores microRNA (miRNA) information for miRNAā€“gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used. + id: 976 + mirId: MIR:00000340 + modified: 2019-06-11T14:16:56.599+0000 + name: TarBase + namespaceEmbeddedInLui: false + pattern: ^[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)? + prefix: tarbase + resources: + - deprecated: false + deprecationDate: + description: TarBase v7 at University of Thessaly + id: 978 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 977 + location: + countryCode: GR + countryName: Greece + name: DIANA-Lab, Department of Electrical & Computer Engineering, University of Thessaly + rorId: + location: + countryCode: GR + countryName: Greece + mirId: MIR:00100713 + name: TarBase v7 at University of Thessaly + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index + sampleId: hsa-let-7a-2-3p + urlPattern: http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas={$id} + sampleId: hsa-let-7a-2-3p + - created: 2019-06-11T14:16:56.827+0000 + deprecated: false + deprecationDate: + description: CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession. + id: 979 + mirId: MIR:00000341 + modified: 2019-06-11T14:16:56.827+0000 + name: CharProt + namespaceEmbeddedInLui: false + pattern: ^CH_\d+$ + prefix: charprot + resources: + - deprecated: false + deprecationDate: + description: CharProt at JCVI + id: 981 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 980 + location: + countryCode: US + countryName: United States + name: J Craig Venter institute, Rockville, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100436 + name: CharProt at JCVI + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.jcvi.org/charprotdb + sampleId: CH_001923 + urlPattern: http://www.jcvi.org/charprotdb/index.cgi/view/{$id} + sampleId: CH_001923 + - created: 2019-06-11T14:16:57.058+0000 + deprecated: false + deprecationDate: + description: OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records. + id: 982 + mirId: MIR:00000342 + modified: 2019-06-11T14:16:57.058+0000 + name: OMA Protein + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9]{5}\d+$ + prefix: oma.protein + resources: + - deprecated: false + deprecationDate: + description: OMA Protein through OMA browser at ETH Zurich + id: 984 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 983 + location: + countryCode: CH + countryName: Switzerland + name: ETH Zurich, Computer Science, Zurich + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100437 + name: OMA Protein through OMA browser at ETH Zurich + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://omabrowser.org/cgi-bin/gateway.pl + sampleId: HUMAN16963 + urlPattern: https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1={$id} + sampleId: HUMAN16963 + - created: 2019-06-11T14:16:57.285+0000 + deprecated: false + deprecationDate: + description: OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs. + id: 985 + mirId: MIR:00000343 + modified: 2019-06-11T14:16:57.285+0000 + name: OMA Group + namespaceEmbeddedInLui: false + pattern: ^[A-Z]+$ + prefix: oma.grp + resources: + - deprecated: false + deprecationDate: + description: OMA Group through OMA browser at ETH Zurich + id: 986 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 983 + location: + countryCode: CH + countryName: Switzerland + name: ETH Zurich, Computer Science, Zurich + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100438 + name: OMA Group through OMA browser at ETH Zurich + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://omabrowser.org/cgi-bin/gateway.pl + sampleId: LCSCCPN + urlPattern: https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1={$id} + sampleId: LCSCCPN + - created: 2019-06-11T14:16:57.477+0000 + deprecated: false + deprecationDate: + description: The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. + id: 987 + mirId: MIR:00000344 + modified: 2019-06-11T14:16:57.477+0000 + name: NCBI Protein + namespaceEmbeddedInLui: false + pattern: ^(\w+\d+(\.\d+)?)|(NP_\d+)$ + prefix: ncbiprotein + resources: + - deprecated: false + deprecationDate: + description: NCBI Protein at NCBI + id: 988 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100439 + name: NCBI Protein at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/protein + sampleId: CAA71118.1 + urlPattern: https://www.ncbi.nlm.nih.gov/protein/{$id} + sampleId: CAA71118.1 + - created: 2019-06-11T14:16:57.671+0000 + deprecated: false + deprecationDate: + description: The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank. + id: 989 + mirId: MIR:00000345 + modified: 2019-06-11T14:16:57.671+0000 + name: GenPept + namespaceEmbeddedInLui: false + pattern: ^\w{3}\d{5}(\.\d+)?$ + prefix: genpept + resources: + - deprecated: false + deprecationDate: + description: GenPept at NCBI + id: 990 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100440 + name: GenPept at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/protein + sampleId: CAA71118.1 + urlPattern: https://www.ncbi.nlm.nih.gov/protein/{$id}?report=genpept + sampleId: CAA71118.1 + - created: 2019-06-11T14:16:57.856+0000 + deprecated: false + deprecationDate: + description: A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location. + id: 991 + mirId: MIR:00000346 + modified: 2019-06-11T14:16:57.856+0000 + name: UniGene + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: unigene + resources: + - deprecated: false + deprecationDate: + description: UniGene at NCBI + id: 993 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100441 + name: UniGene at NCBI + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.ncbi.nlm.nih.gov/unigene + sampleId: '4900' + urlPattern: http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID={$id} + sampleId: '4900' + - created: 2019-06-11T14:16:58.089+0000 + deprecated: false + deprecationDate: + description: BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors. + id: 994 + mirId: MIR:00000347 + modified: 2019-06-11T14:16:58.089+0000 + name: BitterDB Receptor + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: bitterdb.rec + resources: + - deprecated: false + deprecationDate: + description: BitterDB Receptor at The Hebrew University of Jerusalem + id: 996 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 995 + location: + countryCode: IL + countryName: Israel + name: The Robert H Smith Faculty of Agriculture, Food and Environment, The Institute of Biochemistry, Food Science and Nutrition, The Hebrew University of Jerusalem, Rehovot + rorId: + location: + countryCode: IL + countryName: Israel + mirId: MIR:00100442 + name: BitterDB Receptor at The Hebrew University of Jerusalem + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bitterdb.agri.huji.ac.il/dbbitter.php + sampleId: '1' + urlPattern: http://bitterdb.agri.huji.ac.il/Receptor.php?id={$id} + sampleId: '1' + - created: 2019-06-11T14:16:58.347+0000 + deprecated: false + deprecationDate: + description: BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds. + id: 997 + mirId: MIR:00000348 + modified: 2019-06-11T14:16:58.347+0000 + name: BitterDB Compound + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: bitterdb.cpd + resources: + - deprecated: false + deprecationDate: + description: BitterDB Compound at The Hebrew University of Jerusalem + id: 998 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 995 + location: + countryCode: IL + countryName: Israel + name: The Robert H Smith Faculty of Agriculture, Food and Environment, The Institute of Biochemistry, Food Science and Nutrition, The Hebrew University of Jerusalem, Rehovot + rorId: + location: + countryCode: IL + countryName: Israel + mirId: MIR:00100443 + name: BitterDB Compound at The Hebrew University of Jerusalem + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bitterdb.agri.huji.ac.il/dbbitter.php + sampleId: '46' + urlPattern: http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id={$id} + sampleId: '46' + - created: 2019-06-11T14:16:58.543+0000 + deprecated: false + deprecationDate: + description: BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a projectā€™s scope, material, objectives, funding source and general relevance categories. + id: 999 + mirId: MIR:00000349 + modified: 2019-06-11T14:16:58.543+0000 + name: BioProject + namespaceEmbeddedInLui: false + pattern: ^PRJ[DEN][A-Z]\d+$ + prefix: bioproject + resources: + - deprecated: false + deprecationDate: + description: BioProject at DNA Data Bank of Japan + id: 1001 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1000 + location: + countryCode: JP + countryName: Japan + name: DNA Data Bank of Japan, Shizuoka + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100444 + name: BioProject at DNA Data Bank of Japan + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://trace.ddbj.nig.ac.jp/bioproject/ + sampleId: PRJDB3 + urlPattern: http://trace.ddbj.nig.ac.jp/BPSearch/bioproject?acc={$id} + - deprecated: false + deprecationDate: + description: BioProject at NCBI + id: 1002 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100445 + name: BioProject at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/bioproject + sampleId: PRJDB3 + urlPattern: https://www.ncbi.nlm.nih.gov/bioproject?term={$id} + - deprecated: false + deprecationDate: + description: BioProject at European Nucleotide Archive (ENA) + id: 1003 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100446 + name: BioProject at European Nucleotide Archive (ENA) + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/ena/ + sampleId: PRJDB3 + urlPattern: https://www.ebi.ac.uk/ena/data/view/{$id} + sampleId: PRJDB3 + - created: 2019-06-11T14:16:59.017+0000 + deprecated: false + deprecationDate: + description: The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation. + id: 1004 + mirId: MIR:00000350 + modified: 2019-06-11T14:16:59.017+0000 + name: BioSample + namespaceEmbeddedInLui: false + pattern: ^SAM[NED](\w)?\d+$ + prefix: biosample + resources: + - deprecated: false + deprecationDate: + description: BioSamples Database at EBI + id: 1005 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100447 + name: BioSamples Database at EBI + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/biosamples/ + sampleId: SAMEA2397676 + urlPattern: https://www.ebi.ac.uk/biosamples/sample/{$id} + - deprecated: false + deprecationDate: + description: BioSample at NCBI + id: 1006 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100706 + name: BioSample at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: http://www.ncbi.nlm.nih.gov/biosample + sampleId: SAMN00000002 + urlPattern: http://www.ncbi.nlm.nih.gov/biosample?term={$id} + - deprecated: false + deprecationDate: + description: BioSample at DNA Data Bank of Japan + id: 1008 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1007 + location: + countryCode: JP + countryName: Japan + name: Institution DNA Data Bank of Japan, Shizuoka + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100707 + name: BioSample at DNA Data Bank of Japan + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://trace.ddbj.nig.ac.jp/biosample/ + sampleId: SAMD00005257 + urlPattern: http://trace.ddbj.nig.ac.jp/BSSearch/biosample?acc={$id} + sampleId: SAMEA2397676 + - created: 2019-06-11T14:16:59.494+0000 + deprecated: false + deprecationDate: + description: PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + id: 1009 + mirId: MIR:00000351 + modified: 2019-06-11T14:16:59.494+0000 + name: PiroplasmaDB + namespaceEmbeddedInLui: false + pattern: ^TA\d+$ + prefix: piroplasma + resources: + - deprecated: false + deprecationDate: + description: PiroplasmaBD at EuPathDB + id: 1011 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1010 + location: + countryCode: US + countryName: United States + name: Center for Tropical & Emerging Global Diseases, University of Georgia, Georgia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100448 + name: PiroplasmaBD at EuPathDB + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://piroplasmadb.org/ + sampleId: TA14985 + urlPattern: http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id={$id} + sampleId: TA14985 + - created: 2019-06-11T14:16:59.723+0000 + deprecated: false + deprecationDate: + description: UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa. + id: 1012 + mirId: MIR:00000352 + modified: 2019-06-11T14:16:59.723+0000 + name: Unite + namespaceEmbeddedInLui: false + pattern: ^UDB\d{6}$ + prefix: unite + resources: + - deprecated: false + deprecationDate: + description: Unite at University of Tartu + id: 1014 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1013 + location: + countryCode: EE + countryName: Estonia + name: Institute of Botany, University of Tartu, Tartu + rorId: + location: + countryCode: EE + countryName: Estonia + mirId: MIR:00100449 + name: Unite at University of Tartu + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://unite.ut.ee/ + sampleId: UDB000691 + urlPattern: http://unite.ut.ee/bl_forw.php?nimi={$id} + sampleId: UDB000691 + - created: 2019-06-11T14:16:59.945+0000 + deprecated: false + deprecationDate: + description: NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical. + id: 1015 + mirId: MIR:00000353 + modified: 2019-06-11T14:16:59.945+0000 + name: NCIm + namespaceEmbeddedInLui: false + pattern: ^C\d+$ + prefix: ncim + resources: + - deprecated: false + deprecationDate: + description: NCIm at National Cancer Institue + id: 1016 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 442 + location: + countryCode: US + countryName: United States + name: National Cancer Institute, Center for Bioinformatics, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100450 + name: NCIm at National Cancer Institue + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ncim.nci.nih.gov/ + sampleId: C0026339 + urlPattern: http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code={$id} + sampleId: C0026339 + - created: 2019-06-11T14:17:00.162+0000 + deprecated: false + deprecationDate: + description: ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information. + id: 1017 + mirId: MIR:00000354 + modified: 2019-06-11T14:17:00.162+0000 + name: ProGlycProt + namespaceEmbeddedInLui: false + pattern: ^[A-Z]C\d{1,3}$ + prefix: proglyc + resources: + - deprecated: false + deprecationDate: + description: ProGlycProt at IMT + id: 1019 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1018 + location: + countryCode: IN + countryName: India + name: Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Chandigarh + rorId: + location: + countryCode: IN + countryName: India + mirId: MIR:00100451 + name: ProGlycProt at IMT + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.proglycprot.org/ + sampleId: AC119 + urlPattern: http://www.proglycprot.org/detail.aspx?ProId={$id} + sampleId: AC119 + - created: 2019-06-11T14:17:00.403+0000 + deprecated: false + deprecationDate: + description: Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity. + id: 1020 + mirId: MIR:00000355 + modified: 2019-06-11T14:17:00.403+0000 + name: PolBase + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z-0-9]+$ + prefix: polbase + resources: + - deprecated: false + deprecationDate: + description: PolBase at New England BioLabs + id: 1021 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 682 + location: + countryCode: US + countryName: United States + name: New England Biolabs, Ipswich, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100452 + name: PolBase at New England BioLabs + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://polbase.neb.com/ + sampleId: 19-T4 + urlPattern: https://polbase.neb.com/polymerases/{$id}#sequences + sampleId: 19-T4 + - created: 2019-06-11T14:17:00.593+0000 + deprecated: false + deprecationDate: + description: NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs. + id: 1022 + mirId: MIR:00000356 + modified: 2019-06-11T14:17:00.593+0000 + name: NucleaRDB + namespaceEmbeddedInLui: false + pattern: ^\w+\_\w+$ + prefix: nuclearbd + resources: + - deprecated: false + deprecationDate: + description: NucleaRDB at Radboud University Nijmegen Medical Centre + id: 1024 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1023 + location: + countryCode: NL + countryName: Netherlands + name: CMBI, Radboud University Nijmegen Medical Centre, Dreijenplein, Wageningen + rorId: + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00100453 + name: NucleaRDB at Radboud University Nijmegen Medical Centre + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.receptors.org/nucleardb/ + sampleId: prgr_human + urlPattern: http://www.receptors.org/nucleardb/proteins/{$id} + sampleId: prgr_human + - created: 2019-06-11T14:17:00.815+0000 + deprecated: false + deprecationDate: + description: SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt. + id: 1025 + mirId: MIR:00000357 + modified: 2019-06-11T14:17:00.815+0000 + name: SUPFAM + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: supfam + resources: + - deprecated: false + deprecationDate: + description: SUPFAM at MRC and University of Bristol + id: 1027 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1026 + location: + countryCode: GB + countryName: United Kingdom + name: MRC Laboratory of Molecular Biology, Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100454 + name: SUPFAM at MRC and University of Bristol + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://supfam.org/SUPERFAMILY/ + sampleId: SSF57615 + urlPattern: http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid={$id} + sampleId: SSF57615 + - created: 2019-06-11T14:17:01.041+0000 + deprecated: false + deprecationDate: + description: The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines. + id: 1028 + mirId: MIR:00000358 + modified: 2019-06-11T14:17:01.041+0000 + name: Rice Genome Annotation Project + namespaceEmbeddedInLui: false + pattern: ^LOC\_Os\d{1,2}g\d{5}$ + prefix: ricegap + resources: + - deprecated: false + deprecationDate: + description: Rice Genome Annotation Project at TIGR + id: 1029 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 909 + location: + countryCode: US + countryName: United States + name: The Institute for Genomic Research, Rockville, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100455 + name: Rice Genome Annotation Project at TIGR + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://rice.plantbiology.msu.edu/annotation_pseudo_current.shtml + sampleId: LOC_Os02g13300 + urlPattern: http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf={$id} + sampleId: LOC_Os02g13300 + - created: 2019-06-11T14:17:01.276+0000 + deprecated: false + deprecationDate: + description: Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms. + id: 1030 + mirId: MIR:00000359 + modified: 2019-06-11T14:17:01.276+0000 + name: PINA + namespaceEmbeddedInLui: false + pattern: ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ + prefix: pina + resources: + - deprecated: false + deprecationDate: + description: Protein Interaction Network Analysis (PINA) at Garvan Institute + id: 1032 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1031 + location: + countryCode: AU + countryName: Australia + name: Garvan Institute of Medical Research, Sydney + rorId: + location: + countryCode: AU + countryName: Australia + mirId: MIR:00100456 + name: Protein Interaction Network Analysis (PINA) at Garvan Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://cbg.garvan.unsw.edu.au/pina/ + sampleId: Q13485 + urlPattern: http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?ac={$id}&showExtend=null + sampleId: Q13485 + - created: 2019-06-11T14:17:01.500+0000 + deprecated: false + deprecationDate: + description: The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified. + id: 1033 + mirId: MIR:00000360 + modified: 2019-06-11T14:17:01.500+0000 + name: Tissue List + namespaceEmbeddedInLui: false + pattern: ^TS-\d{4}$ + prefix: tissuelist + resources: + - deprecated: false + deprecationDate: + description: Tissue List at Swiss Institute of Bioinformatics + id: 1035 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100457 + name: Tissue List at Swiss Institute of Bioinformatics + official: false + providerCode: sib + resourceHomeUrl: https://www.uniprot.org/docs/tisslist.txt + sampleId: TS-0285 + urlPattern: https://www.uniprot.org/tissues/{$id} + sampleId: TS-0285 + - created: 2019-06-11T14:17:01.735+0000 + deprecated: false + deprecationDate: + description: BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information. + id: 1036 + mirId: MIR:00000361 + modified: 2019-06-11T14:17:01.735+0000 + name: BacMap Biography + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: bacmap.biog + resources: + - deprecated: false + deprecationDate: + description: BacMap Biography at University of Alberta + id: 1038 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1037 + location: + countryCode: CA + countryName: Canada + name: Department of Computing Science, Food and Nutritional Science, University of Alberta, Edmonton + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100459 + name: BacMap Biography at University of Alberta + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bacmap.wishartlab.com/ + sampleId: '1050' + urlPattern: http://bacmap.wishartlab.com/organisms/{$id} + sampleId: '1050' + - created: 2019-06-11T14:17:01.955+0000 + deprecated: false + deprecationDate: + description: The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol. + id: 1039 + mirId: MIR:00000362 + modified: 2019-06-11T14:17:01.955+0000 + name: HGNC Symbol + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z-0-9_]+(\@)?$ + prefix: hgnc.symbol + resources: + - deprecated: false + deprecationDate: + description: HGNC Symbol at HUGO Genome Nomenclature Committee + id: 1040 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100460 + name: HGNC Symbol at HUGO Genome Nomenclature Committee + official: false + providerCode: ebi + resourceHomeUrl: https://www.genenames.org/ + sampleId: DAPK1 + urlPattern: https://www.genenames.org/cgi-bin/gene_symbol_report?match={$id} + sampleId: DAPK1 + - created: 2019-06-11T14:17:02.153+0000 + deprecated: false + deprecationDate: + description: The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components. + id: 1041 + mirId: MIR:00000363 + modified: 2019-06-11T14:17:02.153+0000 + name: PANTHER Pathway + namespaceEmbeddedInLui: false + pattern: ^P\d{5}$ + prefix: panther.pathway + resources: + - deprecated: false + deprecationDate: + description: PANTHER Pathway at USC (Los Angeles) + id: 1042 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 94 + location: + countryCode: US + countryName: United States + name: Keck School of Medicine, University of Southern California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100461 + name: PANTHER Pathway at USC (Los Angeles) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.pantherdb.org/ + sampleId: P00024 + urlPattern: http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession={$id} + sampleId: P00024 + - created: 2019-06-11T14:17:02.358+0000 + deprecated: false + deprecationDate: + description: The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies. + id: 1043 + mirId: MIR:00000364 + modified: 2019-06-11T14:17:02.358+0000 + name: FAIRsharing + namespaceEmbeddedInLui: false + pattern: ^bsg-[dscp]?\d{6}$ + prefix: fairsharing + resources: + - deprecated: false + deprecationDate: + description: FAIRSharing at University of Oxford + id: 1045 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1044 + location: + countryCode: GB + countryName: United Kingdom + name: Oxford e-Research Centre, University of Oxford, Oxford + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100463 + name: FAIRSharing at University of Oxford + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://fairsharing.org/ + sampleId: bsg-000052 + urlPattern: https://fairsharing.org/{$id} + sampleId: bsg-000052 + - created: 2019-06-11T14:17:02.591+0000 + deprecated: false + deprecationDate: + description: FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina. + id: 1046 + mirId: MIR:00000365 + modified: 2019-06-11T14:17:02.591+0000 + name: FungiDB + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z_0-9]+$ + prefix: fungidb + resources: + - deprecated: false + deprecationDate: + description: FungiDB at University of California + id: 1048 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1047 + location: + countryCode: US + countryName: United States + name: Department of Plant Pathology & Microbiology, University of California, Riverside, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100464 + name: FungiDB at University of California + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://fungidb.org/fungidb + sampleId: CNBG_0001 + urlPattern: https://fungidb.org/fungidb/app/record/gene/{$id} + sampleId: CNBG_0001 + - created: 2019-06-11T14:18:08.473+0000 + deprecated: false + deprecationDate: + description: Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images. + id: 1771 + mirId: MIR:00000638 + modified: 2019-06-11T14:18:08.473+0000 + name: NeuroVault Image + namespaceEmbeddedInLui: false + pattern: ^[1-9][0-9]*$ + prefix: neurovault.image + resources: + - deprecated: false + deprecationDate: + description: NeuroVault + id: 1772 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 98 + location: + countryCode: US + countryName: United States + name: Stanford University + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100843 + name: NeuroVault + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://neurovault.org + sampleId: '58788' + urlPattern: https://neurovault.org/images/{$id} + sampleId: '58788' + - created: 2019-06-11T14:17:02.814+0000 + deprecated: false + deprecationDate: + description: DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors. + id: 1049 + mirId: MIR:00000366 + modified: 2019-06-11T14:17:02.814+0000 + name: DARC + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: darc + resources: + - deprecated: false + deprecationDate: + description: DARC at University of Munich + id: 1051 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1050 + location: + countryCode: DE + countryName: Germany + name: Gene Center and Department for Biochemistry and Center for integrated Protein Science Munich, University of Munich, Munich + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100465 + name: DARC at University of Munich + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://darcsite.genzentrum.lmu.de/darc/index.php + sampleId: '1250' + urlPattern: http://darcsite.genzentrum.lmu.de/darc/view.php?id={$id} + sampleId: '1250' + - created: 2019-06-11T14:17:03.033+0000 + deprecated: false + deprecationDate: + description: The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene. + id: 1052 + mirId: MIR:00000367 + modified: 2019-06-11T14:17:03.033+0000 + name: DRSC + namespaceEmbeddedInLui: false + pattern: ^DRSC\d+$ + prefix: drsc + resources: + - deprecated: false + deprecationDate: + description: DRSC at Harvard Medical School + id: 1054 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1053 + location: + countryCode: US + countryName: United States + name: Department of Genetics, Harvard Medical School, Boston, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100466 + name: DRSC at Harvard Medical School + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://flyrnai.org/ + sampleId: DRSC05221 + urlPattern: http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname={$id} + sampleId: DRSC05221 + - created: 2019-06-11T14:17:03.255+0000 + deprecated: false + deprecationDate: + description: OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe. + id: 1055 + mirId: MIR:00000368 + modified: 2019-06-11T14:17:03.255+0000 + name: OriDB Schizosaccharomyces + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: oridb.schizo + resources: + - deprecated: false + deprecationDate: + description: OriDB Schizosaccharomyces at University of Nottingham + id: 1057 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1056 + location: + countryCode: GB + countryName: United Kingdom + name: Centre for Genetics and Genomics, The University of Nottingham, Queen's Medical Centre, Nottingham + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100467 + name: OriDB Schizosaccharomyces at University of Nottingham + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://pombe.oridb.org/index.php + sampleId: '1' + urlPattern: http://pombe.oridb.org/details.php?id={$id} + sampleId: '1' + - created: 2019-06-11T14:17:03.475+0000 + deprecated: false + deprecationDate: + description: OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae. + id: 1058 + mirId: MIR:00000369 + modified: 2019-06-11T14:17:03.475+0000 + name: OriDB Saccharomyces + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: oridb.sacch + resources: + - deprecated: false + deprecationDate: + description: OriDB Saccharomyces at University of Nottingham + id: 1059 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1056 + location: + countryCode: GB + countryName: United Kingdom + name: Centre for Genetics and Genomics, The University of Nottingham, Queen's Medical Centre, Nottingham + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100468 + name: OriDB Saccharomyces at University of Nottingham + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://cerevisiae.oridb.org/index.php + sampleId: '1' + urlPattern: http://cerevisiae.oridb.org/details.php?id={$id} + sampleId: '1' + - created: 2019-06-11T14:17:03.650+0000 + deprecated: false + deprecationDate: + description: The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion. + id: 1060 + mirId: MIR:00000370 + modified: 2019-06-11T14:17:03.650+0000 + name: PSCDB + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: pscdb + resources: + - deprecated: false + deprecationDate: + description: PSCDB at Nagoya University + id: 1062 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1061 + location: + countryCode: JP + countryName: Japan + name: Graduate School of Information Science, Nagoya University, Furo-cho, Chikusa-ku + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100469 + name: PSCDB at Nagoya University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/index.html + sampleId: '051' + urlPattern: http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/{$id}.html + sampleId: '051' + - created: 2019-06-11T14:17:03.870+0000 + deprecated: false + deprecationDate: + description: The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes. + id: 1063 + mirId: MIR:00000371 + modified: 2019-06-11T14:17:03.870+0000 + name: SCOP + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: scop + resources: + - deprecated: false + deprecationDate: + description: SCOP at MRC + id: 1065 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1064 + location: + countryCode: GB + countryName: United Kingdom + name: MRC Laboratory of Molecular Biology, Centre for Protein Engineering, Hills Road, Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100470 + name: SCOP at MRC + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://scop.mrc-lmb.cam.ac.uk/scop/ + sampleId: '47419' + urlPattern: http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sunid={$id} + - deprecated: false + deprecationDate: + description: SCOP at Berkeley + id: 1067 + institution: + description: From a group of academic pioneers in 1868 to the Free Speech Movement in 1964, Berkeley is a place where the brightest minds from across the globe come together to explore, ask questions and improve the world. + homeUrl: https://www.berkeley.edu/ + id: 1066 + location: + countryCode: US + countryName: United States + name: University of California, Berkeley + rorId: https://ror.org/01an7q238 + location: + countryCode: US + countryName: United States + mirId: MIR:00100471 + name: SCOP at Berkeley + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://scop.berkeley.edu/ + sampleId: '47419' + urlPattern: http://scop.berkeley.edu/sunid={$id} + sampleId: '47419' + - created: 2019-06-11T14:17:04.223+0000 + deprecated: false + deprecationDate: + description: The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers. + id: 1068 + mirId: MIR:00000372 + modified: 2019-06-11T14:17:04.223+0000 + name: ENA + namespaceEmbeddedInLui: false + pattern: ^[A-Z]+[0-9]+(\.\d+)?$ + prefix: ena.embl + resources: + - deprecated: false + deprecationDate: + description: ENA through GenBank + id: 1070 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100889 + name: ENA through GenBank + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/Genbank/ + sampleId: BN000065 + urlPattern: https://www.ncbi.nlm.nih.gov/nuccore/{$id} + - deprecated: false + deprecationDate: + description: ENA at European Bioinformatics Institute + id: 1069 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100473 + name: ENA at European Bioinformatics Institute + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/ena/ + sampleId: BN000065 + urlPattern: https://www.ebi.ac.uk/ena/data/view/{$id} + sampleId: BN000065 + - created: 2019-06-11T14:17:04.514+0000 + deprecated: false + deprecationDate: + description: DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides. + id: 1071 + mirId: MIR:00000373 + modified: 2019-06-11T14:17:04.514+0000 + name: DOMMINO + namespaceEmbeddedInLui: false + pattern: ^[0-9][A-Za-z0-9]{3}$ + prefix: dommino + resources: + - deprecated: false + deprecationDate: + description: DOMMINO at University of Missouri + id: 1073 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1072 + location: + countryCode: US + countryName: United States + name: Informatics Institute and Department of Computer Science and Bond Life Science Center, University of Missouri, Columbia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100474 + name: DOMMINO at University of Missouri + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://dommino.org/ + sampleId: 2GC4 + urlPattern: http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/{$id} + sampleId: 2GC4 + - created: 2019-06-11T14:17:04.735+0000 + deprecated: false + deprecationDate: + description: The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ā€˜allā€™ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes. + id: 1074 + mirId: MIR:00000374 + modified: 2019-06-11T14:17:04.735+0000 + name: PANTHER Node + namespaceEmbeddedInLui: false + pattern: ^PTN\d{9}$ + prefix: panther.node + resources: + - deprecated: false + deprecationDate: + description: PANTHER Node at USC (Los Angeles) + id: 1075 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 94 + location: + countryCode: US + countryName: United States + name: Keck School of Medicine, University of Southern California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100475 + name: PANTHER Node at USC (Los Angeles) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://pantree.org/ + sampleId: PTN000000026 + urlPattern: http://www.pantree.org/node/annotationNode.jsp?id={$id} + sampleId: PTN000000026 + - created: 2019-06-11T14:17:04.925+0000 + deprecated: false + deprecationDate: + description: The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations. + id: 1076 + mirId: MIR:00000375 + modified: 2019-06-11T14:17:04.925+0000 + name: Consensus CDS + namespaceEmbeddedInLui: false + pattern: ^CCDS\d+\.\d+$ + prefix: ccds + resources: + - deprecated: false + deprecationDate: + description: Consensus CDS at NCBI + id: 1077 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100477 + name: Consensus CDS at NCBI + official: true + providerCode: ncbi + resourceHomeUrl: http://www.ncbi.nlm.nih.gov/CCDS/ + sampleId: CCDS13573.1 + urlPattern: http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA={$id} + sampleId: CCDS13573.1 + - created: 2019-06-11T14:17:05.741+0000 + deprecated: false + deprecationDate: + description: The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome. + id: 1086 + mirId: MIR:00000377 + modified: 2019-06-11T14:17:05.741+0000 + name: HPRD + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: hprd + resources: + - deprecated: false + deprecationDate: + description: Human Protein Reference Database + id: 1088 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1087 + location: + countryCode: IN + countryName: India + name: Institute of Bioinformatics, International Tech Park, Bangalore + rorId: + location: + countryCode: IN + countryName: India + mirId: MIR:00100479 + name: Human Protein Reference Database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.hprd.org/ + sampleId: '00001' + urlPattern: http://www.hprd.org/protein/{$id} + sampleId: '00001' + - created: 2019-06-11T14:17:05.964+0000 + deprecated: false + deprecationDate: + description: The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes. + id: 1089 + mirId: MIR:00000378 + modified: 2019-06-11T14:17:05.964+0000 + name: GXA Gene + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: gxa.gene + resources: + - deprecated: false + deprecationDate: + description: GXA Gene at EBI + id: 1090 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100482 + name: GXA Gene at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/gxa/ + sampleId: AT4G01080 + urlPattern: https://www.ebi.ac.uk/gxa/genes/{$id} + sampleId: AT4G01080 + - created: 2019-06-11T14:17:06.163+0000 + deprecated: false + deprecationDate: + description: The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments. + id: 1091 + mirId: MIR:00000379 + modified: 2019-06-11T14:17:06.163+0000 + name: GXA Expt + namespaceEmbeddedInLui: false + pattern: ^[AEP]-\w{4}-\d+$ + prefix: gxa.expt + resources: + - deprecated: false + deprecationDate: + description: GXA Expt at EBI + id: 1092 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100483 + name: GXA Expt at EBI + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/gxa/ + sampleId: E-MTAB-2037 + urlPattern: https://www.ebi.ac.uk/gxa/experiments/{$id} + - deprecated: false + deprecationDate: + description: GXA Expt through OmicsDI + id: 1093 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100857 + name: GXA Expt through OmicsDI + official: false + providerCode: omicsdi + resourceHomeUrl: https://www.omicsdi.org/ + sampleId: E-MTAB-2037 + urlPattern: https://www.omicsdi.org/dataset/atlas-experiments/{$id} + sampleId: E-MTAB-2037 + - created: 2019-06-11T14:17:06.457+0000 + deprecated: false + deprecationDate: + description: MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies. + id: 1094 + mirId: MIR:00000380 + modified: 2019-06-11T14:17:06.457+0000 + name: MetaboLights + namespaceEmbeddedInLui: false + pattern: ^MTBLS\d+$ + prefix: metabolights + resources: + - deprecated: false + deprecationDate: + description: MetaboLights at EBI + id: 1095 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100486 + name: MetaboLights at EBI + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/metabolights/ + sampleId: MTBLS1 + urlPattern: https://www.ebi.ac.uk/metabolights/{$id} + - deprecated: false + deprecationDate: + description: MataboLights through OmicsDI + id: 1096 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100853 + name: MataboLights through OmicsDI + official: false + providerCode: omicsdi + resourceHomeUrl: https://www.omicsdi.org/ + sampleId: MTBLS1 + urlPattern: https://www.omicsdi.org/dataset/metabolights_dataset/{$id} + sampleId: MTBLS1 + - created: 2019-06-11T14:17:06.748+0000 + deprecated: false + deprecationDate: + description: The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier. + id: 1097 + mirId: MIR:00000381 + modified: 2019-06-11T14:17:06.748+0000 + name: National Bibliography Number + namespaceEmbeddedInLui: false + pattern: ^urn\:nbn\:[A-Za-z_0-9]+\:([A-Za-z_0-9]+)-[A-Za-z_0-9]+$ + prefix: nbn + resources: + - deprecated: false + deprecationDate: + description: NBN through URN Resolver at German National Library + id: 1099 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1098 + location: + countryCode: DE + countryName: Germany + name: Deutsche Nationalbibliothek, Frankfurt + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100488 + name: NBN through URN Resolver at German National Library + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://nbn-resolving.org/resolve_urn.htm + sampleId: urn:nbn:fi:tkk-004781 + urlPattern: http://nbn-resolving.org/resolver?identifier={$id}&verb=redirect + sampleId: urn:nbn:fi:tkk-004781 + - created: 2019-06-11T14:17:06.994+0000 + deprecated: false + deprecationDate: + description: ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities. + id: 1100 + mirId: MIR:00000382 + modified: 2019-06-11T14:17:06.994+0000 + name: ORCID + namespaceEmbeddedInLui: false + pattern: ^\d{4}-\d{4}-\d{4}-\d{3}(\d|X)$ + prefix: orcid + resources: + - deprecated: false + deprecationDate: + description: ORCID at Bethesda + id: 1102 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1101 + location: + countryCode: US + countryName: United States + name: ORCID Inc, Bethesda, Mayrland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100489 + name: ORCID at Bethesda + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://orcid.org + sampleId: 0000-0002-5355-2576 + urlPattern: https://orcid.org/{$id} + sampleId: 0000-0002-5355-2576 + - created: 2019-06-11T14:17:07.236+0000 + deprecated: false + deprecationDate: + description: The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier. + id: 1103 + mirId: MIR:00000383 + modified: 2019-06-11T14:17:07.236+0000 + name: InChI + namespaceEmbeddedInLui: false + pattern: ^InChI\=1S?\/[A-Za-z0-9\.]+(\+[0-9]+)?(\/[cnpqbtmsih][A-Za-z0-9\-\+\(\)\,\/\?\;\.]+)*$ + prefix: inchi + resources: + - deprecated: false + deprecationDate: + description: InChI through Chemspider + id: 1106 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 439 + location: + countryCode: GB + countryName: United Kingdom + name: Royal Society of Chemistry, Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100492 + name: InChI through Chemspider + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.chemspider.com/ + sampleId: InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3 + urlPattern: http://www.chemspider.com/{$id} + - deprecated: false + deprecationDate: + description: InChI through NIST + id: 1108 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1107 + location: + countryCode: US + countryName: United States + name: National Institute of Standards and Technology, Gaithersburg, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100493 + name: InChI through NIST + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://webbook.nist.gov/chemistry + sampleId: InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3 + urlPattern: http://webbook.nist.gov/cgi/cbook.cgi?{$id} + - deprecated: false + deprecationDate: + description: InChI through ChEBI + id: 1109 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100494 + name: InChI through ChEBI + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/chebi/ + sampleId: InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3 + urlPattern: https://www.ebi.ac.uk/chebi/advancedSearchFT.do?searchString={$id} + - deprecated: false + deprecationDate: + description: InChI through RDF Open Molecules + id: 1105 + institution: + description: >- + Maastricht University (UM) is the most international university in + the Netherlands and, with 18,000 students and 4,400 employees, is + still growing. The university stands out for its innovative + education model, international character and multidisciplinary + approach to research and education. + + Thanks to its high-quality research and study programmes as well as a strong focus on social engagement, UM has quickly built up a solid reputation. Today it is considered one of the best young universities in the world. + homeUrl: https://www.maastrichtuniversity.nl + id: 283 + location: + countryCode: NL + countryName: Netherlands + name: Maastricht University + rorId: https://ror.org/02jz4aj89 + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00100491 + name: InChI through RDF Open Molecules + official: false + providerCode: um + resourceHomeUrl: http://rdf.openmolecules.net/ + sampleId: InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3 + urlPattern: http://rdf.openmolecules.net/?{$id} + sampleId: InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3 + - created: 2019-06-11T14:17:07.845+0000 + deprecated: false + deprecationDate: + description: Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay. + id: 1110 + mirId: MIR:00000384 + modified: 2019-06-11T14:17:07.845+0000 + name: Wikipedia (En) + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z-0-9_]+$ + prefix: wikipedia.en + resources: + - deprecated: false + deprecationDate: + description: Wikipedia (English) + id: 1112 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1111 + location: + countryCode: US + countryName: United States + name: Wikimedia Foundation, San Francisco, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100495 + name: Wikipedia (English) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://en.wikipedia.org/wiki/Main_Page + sampleId: SM_UB-81 + urlPattern: http://en.wikipedia.org/wiki/{$id} + - deprecated: false + deprecationDate: + description: Wikipedia structured content through DBpedia + id: 1114 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1113 + location: + countryCode: US + countryName: United States + name: OpenLink Software, Burlington, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100496 + name: Wikipedia structured content through DBpedia + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://wiki.dbpedia.org/ + sampleId: SM_UB-81 + urlPattern: http://dbpedia.org/page/{$id} + sampleId: SM_UB-81 + - created: 2019-06-11T14:17:08.222+0000 + deprecated: false + deprecationDate: + description: PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information. + id: 1115 + mirId: MIR:00000385 + modified: 2019-06-11T14:17:08.222+0000 + name: PhosphoPoint Kinase + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: phosphopoint.kinase + resources: + - deprecated: false + deprecationDate: + description: PhosphoPoint Kinase at National Taiwan University + id: 1117 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1116 + location: + countryCode: CN + countryName: China + name: Department of Computer Science and Information Engineering, National Taiwan University + rorId: + location: + countryCode: CN + countryName: China + mirId: MIR:00100499 + name: PhosphoPoint Kinase at National Taiwan University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://kinase.bioinformatics.tw/ + sampleId: AURKA + urlPattern: http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name={$id}&drawing=0&sorting=0&kinome=1 + sampleId: AURKA + - created: 2019-06-11T14:17:08.458+0000 + deprecated: false + deprecationDate: + description: PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information. + id: 1118 + mirId: MIR:00000386 + modified: 2019-06-11T14:17:08.458+0000 + name: PhosphoPoint Phosphoprotein + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: phosphopoint.protein + resources: + - deprecated: false + deprecationDate: + description: PhosphoPoint Phosphoprotein at National Taiwan University + id: 1119 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1116 + location: + countryCode: CN + countryName: China + name: Department of Computer Science and Information Engineering, National Taiwan University + rorId: + location: + countryCode: CN + countryName: China + mirId: MIR:00100500 + name: PhosphoPoint Phosphoprotein at National Taiwan University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://kinase.bioinformatics.tw/ + sampleId: AURKA + urlPattern: http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name={$id}&drawing=0&sorting=0&kinome=0 + sampleId: AURKA + - created: 2019-06-11T14:17:08.649+0000 + deprecated: false + deprecationDate: + description: The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI. + id: 1120 + mirId: MIR:00000387 + modified: 2019-06-11T14:17:08.649+0000 + name: InChIKey + namespaceEmbeddedInLui: false + pattern: ^[A-Z]{14}\-[A-Z]{10}(\-[A-Z])? + prefix: inchikey + resources: + - deprecated: false + deprecationDate: + description: InChIKey through ChemSpider + id: 1121 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 439 + location: + countryCode: GB + countryName: United Kingdom + name: Royal Society of Chemistry, Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100501 + name: InChIKey through ChemSpider + official: true + providerCode: chemspider + resourceHomeUrl: http://www.chemspider.com/ + sampleId: RYYVLZVUVIJVGH-UHFFFAOYSA-N + urlPattern: http://www.chemspider.com/inchikey={$id} + - deprecated: false + deprecationDate: + description: InChiKey resolver at NCI + id: 1122 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 425 + location: + countryCode: US + countryName: United States + name: National Cancer Institute, Rockville, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100505 + name: InChiKey resolver at NCI + official: true + providerCode: cactus + resourceHomeUrl: http://cactus.nci.nih.gov/chemical/structure + sampleId: RYYVLZVUVIJVGH-UHFFFAOYSA-N + urlPattern: http://cactus.nci.nih.gov/chemical/structure/{$id}/names + - deprecated: false + deprecationDate: + description: Scholia is a service that creates visual scholarly profiles for topic, people, organizations, species, chemicals, etc using bibliographic and other information in Wikidata. + id: 2470 + institution: + description: >- + Maastricht University (UM) is the most international university in + the Netherlands and, with 18,000 students and 4,400 employees, is + still growing. The university stands out for its innovative + education model, international character and multidisciplinary + approach to research and education. + + Thanks to its high-quality research and study programmes as well as a strong focus on social engagement, UM has quickly built up a solid reputation. Today it is considered one of the best young universities in the world. + homeUrl: https://www.maastrichtuniversity.nl + id: 283 + location: + countryCode: NL + countryName: Netherlands + name: Maastricht University + rorId: https://ror.org/02jz4aj89 + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00000779 + name: Scholia + official: false + providerCode: scholia + resourceHomeUrl: https://scholia.toolforge.org/ + sampleId: WUUVSJBKHXDKBS-ROFOPDMZSA-N + urlPattern: https://scholia.toolforge.org/inchikey/{$id} + sampleId: RYYVLZVUVIJVGH-UHFFFAOYSA-N + - created: 2019-06-11T14:17:08.943+0000 + deprecated: false + deprecationDate: + description: The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information. + id: 1123 + mirId: MIR:00000388 + modified: 2019-06-11T14:17:08.943+0000 + name: UniProt Isoform + namespaceEmbeddedInLui: false + pattern: ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\-\d+)$ + prefix: uniprot.isoform + resources: + - deprecated: false + deprecationDate: + description: UniProt Isoform through Universal Protein Resource + id: 1124 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 24 + location: + countryCode: GB + countryName: United Kingdom + name: UniProt Consortium + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100502 + name: UniProt Isoform through Universal Protein Resource + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.uniprot.org/ + sampleId: Q5BJF6-3 + urlPattern: http://www.uniprot.org/uniprot/{$id} + - deprecated: false + deprecationDate: + description: UniProt Isoform through Universal Protein Resource using Persistent URL system + id: 1125 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 24 + location: + countryCode: GB + countryName: United Kingdom + name: UniProt Consortium + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100503 + name: UniProt Isoform through Universal Protein Resource using Persistent URL system + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://purl.uniprot.org/ + sampleId: Q5BJF6-3 + urlPattern: http://purl.uniprot.org/uniprot/{$id} + - deprecated: false + deprecationDate: + description: UniProt Isoform through UniParc + id: 1126 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 24 + location: + countryCode: GB + countryName: United Kingdom + name: UniProt Consortium + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100504 + name: UniProt Isoform through UniParc + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.uniprot.org/uniparc/ + sampleId: Q5BJF6-3 + urlPattern: http://www.uniprot.org/uniparc/?query={$id} + sampleId: Q5BJF6-3 + - created: 2019-06-11T14:17:09.349+0000 + deprecated: false + deprecationDate: + description: KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable. + id: 1127 + mirId: MIR:00000389 + modified: 2019-06-11T14:17:09.349+0000 + name: KEGG Environ + namespaceEmbeddedInLui: false + pattern: ^(ev\:)?E\d+$ + prefix: kegg.environ + resources: + - deprecated: false + deprecationDate: + description: KEGG ENVIRON Database + id: 1128 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 15 + location: + countryCode: JP + countryName: Japan + name: Kyoto University Bioinformatics Center + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100506 + name: KEGG ENVIRON Database + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.genome.jp/kegg/drug/environ.html + sampleId: ev:E00032 + urlPattern: http://www.kegg.jp/entry/{$id} + sampleId: ev:E00032 + - created: 2019-06-11T14:17:09.531+0000 + deprecated: false + deprecationDate: + description: The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through distributors, allowing cell line requests to be made from collections and laboratories. + id: 1129 + mirId: MIR:00000390 + modified: 2019-06-11T14:17:09.531+0000 + name: CLDB + namespaceEmbeddedInLui: false + pattern: ^(cl|tum)\d+$ + prefix: cldb + resources: + - deprecated: false + deprecationDate: + description: CLDB at Genova + id: 1131 + institution: + description: NOTE - No international description has been found on its website, so it's not been possible to include a brief summary here. + homeUrl: http://www.ospedalesanmartino.it + id: 1130 + location: + countryCode: IT + countryName: Italy + name: Ospedale San Martino + rorId: https://ror.org/04d7es448 + location: + countryCode: IT + countryName: Italy + mirId: MIR:00100508 + name: CLDB at Genova + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bioinformatics.hsanmartino.it/hypercldb/indexes.html + sampleId: cl3603 + urlPattern: http://bioinformatics.hsanmartino.it/hypercldb/{$id}.html + sampleId: cl3603 + - created: 2019-06-11T14:17:09.753+0000 + deprecated: false + deprecationDate: + description: The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team. + id: 1132 + mirId: MIR:00000391 + modified: 2019-06-11T14:17:09.753+0000 + name: Experimental Factor Ontology + namespaceEmbeddedInLui: false + pattern: ^\d{7}$ + prefix: efo + resources: + - deprecated: false + deprecationDate: + description: EFO through OLS + id: 1133 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100509 + name: EFO through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/efo + sampleId: '0004859' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/efo/terms?obo_id=EFO:{$id} + - deprecated: false + deprecationDate: + description: EFO through BioPortal + id: 1134 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100510 + name: EFO through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/EFO + sampleId: '0004859' + urlPattern: http://purl.bioontology.org/ontology/EFO/efo:EFO_{$id} + - deprecated: false + deprecationDate: + description: EFO through Functional Genomics Group (EBI) + id: 1135 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100511 + name: EFO through Functional Genomics Group (EBI) + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/efo/ + sampleId: '0004859' + urlPattern: https://www.ebi.ac.uk/efo/EFO_{$id} + sampleId: '0004859' + - created: 2019-06-11T14:17:10.208+0000 + deprecated: false + deprecationDate: + description: The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases. + id: 1136 + mirId: MIR:00000392 + modified: 2019-06-11T14:17:10.208+0000 + name: HGMD + namespaceEmbeddedInLui: false + pattern: ^[A-Z_0-9]+$ + prefix: hgmd + resources: + - deprecated: false + deprecationDate: + description: HGMD at Cardiff University + id: 1138 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1137 + location: + countryCode: GB + countryName: United Kingdom + name: Cardiff University, Cardiff + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100512 + name: HGMD at Cardiff University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.hgmd.cf.ac.uk/ac/index.php + sampleId: CALM1 + urlPattern: http://www.hgmd.cf.ac.uk/ac/gene.php?gene={$id} + sampleId: CALM1 + - created: 2019-06-11T14:17:10.425+0000 + deprecated: false + deprecationDate: + description: AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information. + id: 1139 + mirId: MIR:00000393 + modified: 2019-06-11T14:17:10.425+0000 + name: AphidBase Transcript + namespaceEmbeddedInLui: false + pattern: ^ACYPI\d{6}(-RA)?$ + prefix: aphidbase.transcript + resources: + - deprecated: false + deprecationDate: + description: AphidBase at INRA + id: 1141 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1140 + location: + countryCode: FR + countryName: France + name: INRA UMR, Le Rheu + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100513 + name: AphidBase at INRA + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.aphidbase.com/aphidbase + sampleId: ACYPI000159 + urlPattern: http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID={$id} + sampleId: ACYPI000159 + - created: 2019-06-11T14:17:10.647+0000 + deprecated: false + deprecationDate: + description: An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration. + id: 1142 + mirId: MIR:00000394 + modified: 2019-06-11T14:17:10.647+0000 + name: Affymetrix Probeset + namespaceEmbeddedInLui: false + pattern: \d{4,}((_[asx])?_at)? + prefix: affy.probeset + resources: + - deprecated: false + deprecationDate: + description: Affymetrix ProbeSet in Santa Clara + id: 1144 + institution: + description: Thermo Fisher Scientific provides innovative Affymetrixā„¢ products, tools, and resources that help advance the work of researchers via microarray analysis + homeUrl: https://www.thermofisher.com/uk/en/home/life-science/microarray-analysis.html + id: 1143 + location: + countryCode: US + countryName: United States + name: Affymetrix + rorId: https://ror.org/012kjw534 + location: + countryCode: US + countryName: United States + mirId: MIR:00100514 + name: Affymetrix ProbeSet in Santa Clara + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.affymetrix.com/ + sampleId: 243002_at + urlPattern: https://www.affymetrix.com/LinkServlet?probeset={$id} + - deprecated: false + deprecationDate: + description: Bio2RDF + id: 1145 + institution: + description: Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers. + homeUrl: https://bio2rdf.org + id: 33 + location: + countryCode: US + countryName: United States + name: Bio2RDF.org + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100672 + name: Bio2RDF + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://cu.affymetrix.bio2rdf.org/fct/ + sampleId: 243002_at + urlPattern: http://cu.affymetrix.bio2rdf.org/describe/?url=http://bio2rdf.org/affymetrix:{$id} + sampleId: 243002_at + - created: 2019-06-11T14:17:10.973+0000 + deprecated: false + deprecationDate: + description: TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. + id: 1146 + mirId: MIR:00000395 + modified: 2019-06-11T14:17:10.973+0000 + name: TreeFam + namespaceEmbeddedInLui: false + pattern: ^\w{1,2}\d+$ + prefix: treefam + resources: + - deprecated: false + deprecationDate: + description: TreeFam database + id: 1148 + institution: + description: >- + BGI Genomics is a publicly listed commercial genomics company, + providing a wide range of next generation sequencing services and + a broad portfolio of genetic tests for medical institutions, + research institutions and other public and private partners. + + Established in 1999, we have almost 20 years of genomics experience. Our mission is to leverage our genomics expertise in order to advance life science research and improve human health for the benefit of mankind. + homeUrl: https://www.bgi.com + id: 1147 + location: + countryCode: CN + countryName: China + name: Beijing Genomics Institute + rorId: https://ror.org/045pn2j94 + location: + countryCode: CN + countryName: China + mirId: MIR:00100515 + name: TreeFam database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.treefam.org/ + sampleId: TF101014 + urlPattern: http://www.treefam.org/family/{$id} + sampleId: TF101014 + - created: 2019-06-11T14:17:11.199+0000 + deprecated: false + deprecationDate: + description: CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps. + id: 1149 + mirId: MIR:00000396 + modified: 2019-06-11T14:17:11.199+0000 + name: CAPS-DB + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: caps + resources: + - deprecated: false + deprecationDate: + description: CAPS-DB at Leeds Institute of Molecular Medicine + id: 1151 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1150 + location: + countryCode: GB + countryName: United Kingdom + name: Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, Leeds + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100516 + name: CAPS-DB at Leeds Institute of Molecular Medicine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home + sampleId: '434' + urlPattern: http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl={$id} + sampleId: '434' + - created: 2019-06-11T14:17:11.437+0000 + deprecated: false + deprecationDate: + description: Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available. + id: 1152 + mirId: MIR:00000397 + modified: 2019-06-11T14:17:11.437+0000 + name: Cube db + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z_0-9]+$ + prefix: cubedb + resources: + - deprecated: false + deprecationDate: + description: Cube db at Bioinformatics Institute (Singapore) + id: 1154 + institution: + description: The BII focuses on theoretical approaches aimed at understanding biomolecular mechanisms that underlie biological phenomena, the development of computational methods to support this discovery process, and experimental verification of predicted molecular and cellular functions of genes and proteins with biochemical methods. + homeUrl: http://www.bii.a-star.edu.sg + id: 1153 + location: + countryCode: SG + countryName: Singapore + name: BII Bioinformatics Institute + rorId: https://ror.org/044w3nw43 + location: + countryCode: CN + countryName: China + mirId: MIR:00100517 + name: Cube db at Bioinformatics Institute (Singapore) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://epsf.bmad.bii.a-star.edu.sg/cube/db/html/home.html + sampleId: AKR + urlPattern: http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/{$id}/ + sampleId: AKR + - created: 2019-06-11T14:17:11.651+0000 + deprecated: false + deprecationDate: + description: IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments. + id: 1155 + mirId: MIR:00000398 + modified: 2019-06-11T14:17:11.651+0000 + name: IDEAL + namespaceEmbeddedInLui: false + pattern: ^IID\d+$ + prefix: ideal + resources: + - deprecated: false + deprecationDate: + description: IDEAL at Nagoya University + id: 1157 + institution: + description: Nagoya University has a 144-year history, dating from when the Temporary怀Medical School/Public Hospital -- the forerunner of today's Nagoya University -- was established in 1871. The University became the last Imperial University of Japan in 1939, and the educational reforms in 1949 led to the beginning of Nagoya University under the new education system. From that time to this day, the University has been pursuing steady development. + homeUrl: http://en.nagoya-u.ac.jp/ + id: 1156 + location: + countryCode: JP + countryName: Japan + name: Nagoya University + rorId: https://ror.org/04chrp450 + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100518 + name: IDEAL at Nagoya University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/ + sampleId: IID00001 + urlPattern: http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id={$id} + sampleId: IID00001 + - created: 2019-06-11T14:17:11.871+0000 + deprecated: false + deprecationDate: + description: STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB). + id: 1158 + mirId: MIR:00000399 + modified: 2019-06-11T14:17:11.871+0000 + name: STAP + namespaceEmbeddedInLui: false + pattern: ^[0-9][A-Za-z0-9]{3}$ + prefix: stap + resources: + - deprecated: false + deprecationDate: + description: STAP at Korean Bioinformation Center + id: 1160 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1159 + location: + countryCode: KR + countryName: Korea, Republic of + name: Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon + rorId: + location: + countryCode: KR + countryName: Korea, Republic of + mirId: MIR:00100519 + name: STAP at Korean Bioinformation Center + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://psb.kobic.re.kr/STAP/refinement/ + sampleId: 1a24 + urlPattern: http://psb.kobic.re.kr/STAP/refinement1/result.php?search={$id} + sampleId: 1a24 + - created: 2019-06-11T14:17:12.099+0000 + deprecated: false + deprecationDate: + description: Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries. + id: 1161 + mirId: MIR:00000400 + modified: 2019-06-11T14:17:12.099+0000 + name: Pocketome + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z_0-9]+ + prefix: pocketome + resources: + - deprecated: false + deprecationDate: + description: Pocketome at UCSD Skaggs School + id: 1163 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1162 + location: + countryCode: US + countryName: United States + name: UCSD Skaggs School of Pharmacy and Pharmaceutical Sciences, La Jolla, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100520 + name: Pocketome at UCSD Skaggs School + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.pocketome.org/sfSearch.cgi?act=browseall + sampleId: 1433C_TOBAC_1_252 + urlPattern: http://www.pocketome.org/files/{$id}.html + sampleId: 1433C_TOBAC_1_252 + - created: 2019-06-11T14:17:12.749+0000 + deprecated: false + deprecationDate: + description: BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols. + id: 1169 + mirId: MIR:00000403 + modified: 2019-06-11T14:17:12.749+0000 + name: BugBase Protocol + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: bugbase.protocol + resources: + - deprecated: false + deprecationDate: + description: BugBase Protocol at University of London + id: 1171 + institution: + description: >- + St Georgeā€™s Hospital Medical School was established in 1733 and + initially based at Hyde Park Corner, before moving to our Tooting + site in 1980. It was the second institution in England to provide + formal training courses for doctors. + + St Georgeā€™s has a dynamic research culture, with teams working to improve the health of people of all ages, from children to the elderly, in populations locally and globally. + homeUrl: https://www.sgul.ac.uk/ + id: 1170 + location: + countryCode: GB + countryName: United Kingdom + name: St George's, University of London + rorId: https://ror.org/040f08y74 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100523 + name: BugBase Protocol at University of London + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bugs.sgul.ac.uk/E-BUGS + sampleId: '67' + urlPattern: http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?protocol_id={$id}&action=view + sampleId: '67' + - created: 2019-06-11T14:17:12.968+0000 + deprecated: false + deprecationDate: + description: BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments. + id: 1172 + mirId: MIR:00000404 + modified: 2019-06-11T14:17:12.968+0000 + name: BugBase Expt + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: bugbase.expt + resources: + - deprecated: false + deprecationDate: + description: BugBase Expt at University of London + id: 1173 + institution: + description: >- + St Georgeā€™s Hospital Medical School was established in 1733 and + initially based at Hyde Park Corner, before moving to our Tooting + site in 1980. It was the second institution in England to provide + formal training courses for doctors. + + St Georgeā€™s has a dynamic research culture, with teams working to improve the health of people of all ages, from children to the elderly, in populations locally and globally. + homeUrl: https://www.sgul.ac.uk/ + id: 1170 + location: + countryCode: GB + countryName: United Kingdom + name: St George's, University of London + rorId: https://ror.org/040f08y74 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100524 + name: BugBase Expt at University of London + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bugs.sgul.ac.uk/E-BUGS + sampleId: '288' + urlPattern: http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?expt_id={$id}&action=view + sampleId: '288' + - created: 2019-06-11T14:17:13.167+0000 + deprecated: false + deprecationDate: + description: "The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). \r\n\r\nEach page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things." + id: 1174 + mirId: MIR:00000405 + modified: 2019-06-11T14:17:13.167+0000 + name: Tree of Life + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: tol + resources: + - deprecated: false + deprecationDate: + description: Tree of Life Web + id: 1176 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1175 + location: + countryCode: US + countryName: United States + name: University of Arizona + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100525 + name: Tree of Life Web + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://tolweb.org/tree/ + sampleId: '98034' + urlPattern: http://tolweb.org/{$id} + sampleId: '98034' + - created: 2019-06-11T14:17:13.429+0000 + deprecated: false + deprecationDate: + description: The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level. + id: 1177 + mirId: MIR:00000406 + modified: 2019-06-11T14:17:13.429+0000 + name: VariO + namespaceEmbeddedInLui: true + pattern: ^VariO:\d+$ + prefix: vario + resources: + - deprecated: false + deprecationDate: + description: VariO through BioPortal + id: 1180 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100566 + name: VariO through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/VARIO + sampleId: '0294' + urlPattern: http://purl.bioontology.org/ontology/VARIO/VariO:{$id} + - deprecated: false + deprecationDate: + description: VariO through OLS + id: 1181 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100677 + name: VariO through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/vario + sampleId: '0294' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/vario/terms?obo_id=VariO:{$id} + - deprecated: false + deprecationDate: + description: VariO at Lund University + id: 1179 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1178 + location: + countryCode: SE + countryName: Sweden + name: Department of Experimental Medical Science, Lund University + rorId: + location: + countryCode: SE + countryName: Sweden + mirId: MIR:00100526 + name: VariO at Lund University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.variationontology.org/ + sampleId: '0294' + urlPattern: http://www.ontobee.org/search?ontology=VariO&keywords=VariO_{$id}&submit=Search+terms + sampleId: '0294' + - created: 2019-06-11T14:17:13.893+0000 + deprecated: false + deprecationDate: + description: The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information. + id: 1182 + mirId: MIR:00000407 + modified: 2019-06-11T14:17:13.893+0000 + name: ViPR Strain + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z 0-9]+$ + prefix: vipr + resources: + - deprecated: false + deprecationDate: + description: ViPR Strain at J. Craig Venter Institute + id: 1184 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1183 + location: + countryCode: US + countryName: United States + name: J. Craig Venter Institute, San Diego, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100527 + name: ViPR Strain at J. Craig Venter Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.viprbrc.org/brc/home.do?decorator=vipr + sampleId: BeAn 70563 + urlPattern: http://www.viprbrc.org/brc/viprStrainDetails.do?strainName={$id}&decorator=arena + sampleId: BeAn 70563 + - created: 2019-06-11T14:17:14.109+0000 + deprecated: false + deprecationDate: + description: The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis. + id: 1185 + mirId: MIR:00000408 + modified: 2019-06-11T14:17:14.109+0000 + name: EPD + namespaceEmbeddedInLui: false + pattern: ^[A-Z-_0-9]+$ + prefix: epd + resources: + - deprecated: false + deprecationDate: + description: EPD at Swiss Institute of Bioinformatics + id: 1186 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100528 + name: EPD at Swiss Institute of Bioinformatics + official: false + providerCode: sib + resourceHomeUrl: http://epd.vital-it.ch/ + sampleId: TA_H3 + urlPattern: http://epd.vital-it.ch/cgi-bin/query_result.pl?out_format=NICE&Entry_0={$id} + sampleId: TA_H3 + - created: 2019-06-11T14:17:14.331+0000 + deprecated: false + deprecationDate: + description: 'The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.' + id: 1187 + mirId: MIR:00000409 + modified: 2019-06-11T14:17:14.331+0000 + name: RFAM + namespaceEmbeddedInLui: false + pattern: ^RF\d{5}$ + prefix: rfam + resources: + - deprecated: false + deprecationDate: + description: Rfam at EMBL-EBI + id: 1188 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100686 + name: Rfam at EMBL-EBI + official: true + providerCode: ebi + resourceHomeUrl: https://rfam.xfam.org/ + sampleId: RF00230 + urlPattern: https://rfam.xfam.org/family/{$id} + sampleId: RF00230 + - created: 2019-06-11T14:17:14.533+0000 + deprecated: false + deprecationDate: + description: DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms. + id: 1189 + mirId: MIR:00000410 + modified: 2019-06-11T14:17:14.533+0000 + name: Fungal Barcode + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: fbol + resources: + - deprecated: false + deprecationDate: + description: Fungal Barcode at Fungal Biodiversity Centre + id: 1191 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1190 + location: + countryCode: NL + countryName: Netherlands + name: Fungal Biodiversity Centre, Utrecht + rorId: + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00100532 + name: Fungal Barcode at Fungal Biodiversity Centre + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.fungalbarcoding.org/ + sampleId: '2224' + urlPattern: http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec={$id}&Fields=All&ExactMatch=T + sampleId: '2224' + - created: 2019-06-11T14:17:14.756+0000 + deprecated: false + deprecationDate: + description: The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species. + id: 1192 + mirId: MIR:00000411 + modified: 2019-06-11T14:17:14.756+0000 + name: AFTOL + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: aftol.taxonomy + resources: + - deprecated: false + deprecationDate: + description: AFTOL at University of Minnesota + id: 1194 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1193 + location: + countryCode: US + countryName: United States + name: Department of Plant Biology, University of Minnesota, Minnesota + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100533 + name: AFTOL at University of Minnesota + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://aftol.org/data.php + sampleId: '959' + urlPattern: http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id={$id} + sampleId: '959' + - created: 2019-06-11T14:17:14.975+0000 + deprecated: false + deprecationDate: + description: The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information. + id: 1195 + mirId: MIR:00000412 + modified: 2019-06-11T14:17:14.975+0000 + name: AspGD Locus + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z_0-9]+$ + prefix: aspgd.locus + resources: + - deprecated: false + deprecationDate: + description: AspGD at Stanford Medical School + id: 1197 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1196 + location: + countryCode: US + countryName: United States + name: Department of Genetics, Stanford University Medical School, Stanford, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100534 + name: AspGD at Stanford Medical School + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.aspgd.org/ + sampleId: ASPL0000349247 + urlPattern: http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid={$id} + sampleId: ASPL0000349247 + - created: 2019-06-11T14:17:15.227+0000 + deprecated: false + deprecationDate: + description: The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information. + id: 1198 + mirId: MIR:00000413 + modified: 2019-06-11T14:17:15.227+0000 + name: AspGD Protein + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z_0-9]+$ + prefix: aspgd.protein + resources: + - deprecated: false + deprecationDate: + description: AspGD Protein at Stanford Medical School + id: 1199 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1196 + location: + countryCode: US + countryName: United States + name: Department of Genetics, Stanford University Medical School, Stanford, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100535 + name: AspGD Protein at Stanford Medical School + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.aspgd.org/ + sampleId: ASPL0000349247 + urlPattern: http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid={$id} + sampleId: ASPL0000349247 + - created: 2019-06-11T14:17:18.754+0000 + deprecated: false + deprecationDate: + description: The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily. + id: 1237 + mirId: MIR:00000431 + modified: 2019-06-11T14:17:18.754+0000 + name: National Drug Code + namespaceEmbeddedInLui: false + pattern: ^\d+\-\d+\-\d+ + prefix: ndc + resources: + - deprecated: false + deprecationDate: + description: National Drug Code at Food and Drug Administration + id: 1239 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1238 + location: + countryCode: US + countryName: United States + name: U.S. Food and Drug Administration, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100554 + name: National Drug Code at Food and Drug Administration + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.accessdata.fda.gov/scripts/cder/ndc/ + sampleId: 0002-1975-61 + urlPattern: http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/{$id} + - deprecated: false + deprecationDate: + description: Bio2RDF + id: 1240 + institution: + description: Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers. + homeUrl: https://bio2rdf.org + id: 33 + location: + countryCode: US + countryName: United States + name: Bio2RDF.org + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100700 + name: Bio2RDF + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ndc.bio2rdf.org/fct + sampleId: 0002-1975-61 + urlPattern: http://ndc.bio2rdf.org/describe/?url=http://bio2rdf.org/ndc:{$id} + sampleId: 0002-1975-61 + - created: 2019-06-11T14:17:15.426+0000 + deprecated: false + deprecationDate: + description: AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder. + id: 1200 + mirId: MIR:00000415 + modified: 2019-06-11T14:17:15.426+0000 + name: AutDB + namespaceEmbeddedInLui: false + pattern: ^[A-Z]+[A-Z-0-9]{2,}$ + prefix: autdb + resources: + - deprecated: false + deprecationDate: + description: AutDB at MindSpec + id: 1202 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1201 + location: + countryCode: US + countryName: United States + name: MindSpec Inc., Fairfax, Virginia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100538 + name: AutDB at MindSpec + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://autism.mindspec.org/autdb/ + sampleId: ADA + urlPattern: http://autism.mindspec.org/GeneDetail/{$id} + sampleId: ADA + - created: 2019-06-11T14:17:15.634+0000 + deprecated: false + deprecationDate: + description: BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information. + id: 1203 + mirId: MIR:00000416 + modified: 2019-06-11T14:17:15.634+0000 + name: BacMap Map + namespaceEmbeddedInLui: false + pattern: ^\w+(\_)?\d+(\.\d+)?$ + prefix: bacmap.map + resources: + - deprecated: false + deprecationDate: + description: BacMap Genome Map at University of Alberta + id: 1204 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1037 + location: + countryCode: CA + countryName: Canada + name: Department of Computing Science, Food and Nutritional Science, University of Alberta, Edmonton + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100539 + name: BacMap Genome Map at University of Alberta + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bacmap.wishartlab.com/ + sampleId: AP011135 + urlPattern: http://bacmap.wishartlab.com/maps/{$id}/index.html + sampleId: AP011135 + - created: 2019-06-11T14:17:15.821+0000 + deprecated: false + deprecationDate: + description: Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species. + id: 1205 + mirId: MIR:00000417 + modified: 2019-06-11T14:17:15.821+0000 + name: Bgee family + namespaceEmbeddedInLui: false + pattern: ^(ENSFM|ENSGTV:)\d+$ + prefix: bgee.family + resources: + - deprecated: false + deprecationDate: + description: Bgee at Lausanne + id: 1207 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100540 + name: Bgee at Lausanne + official: false + providerCode: sib + resourceHomeUrl: http://bgee.unil.ch/bgee/bgee + sampleId: ENSFM00500000270089 + urlPattern: http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id={$id} + sampleId: ENSFM00500000270089 + - created: 2019-06-11T14:17:16.067+0000 + deprecated: false + deprecationDate: + description: Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee. + id: 1208 + mirId: MIR:00000418 + modified: 2019-06-11T14:17:16.067+0000 + name: Bgee gene + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z]+\d+$ + prefix: bgee.gene + resources: + - deprecated: false + deprecationDate: + description: Bgee gene + id: 1210 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100541 + name: Bgee gene + official: false + providerCode: sib + resourceHomeUrl: https://bgee.org/ + sampleId: FBgn0000015 + urlPattern: https://bgee.org/?page=gene&gene_id={$id} + sampleId: FBgn0000015 + - created: 2019-06-11T14:17:16.333+0000 + deprecated: false + deprecationDate: + description: Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages. + id: 1211 + mirId: MIR:00000419 + modified: 2019-06-11T14:17:16.333+0000 + name: Bgee stage + namespaceEmbeddedInLui: false + pattern: ^(FBvd|XtroDO|HsapDO|MmusDO)\:\d+$ + prefix: bgee.stage + resources: + - deprecated: false + deprecationDate: + description: Bgee at Lausanne + id: 1212 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100542 + name: Bgee at Lausanne + official: false + providerCode: sib + resourceHomeUrl: http://bgee.unil.ch/bgee/bgee + sampleId: HsapDO:0000004 + urlPattern: http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_id={$id}&stage_children=on + sampleId: HsapDO:0000004 + - created: 2019-06-11T14:17:16.514+0000 + deprecated: false + deprecationDate: + description: Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures. + id: 1213 + mirId: MIR:00000420 + modified: 2019-06-11T14:17:16.514+0000 + name: Bgee organ + namespaceEmbeddedInLui: false + pattern: ^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\:\d+$ + prefix: bgee.organ + resources: + - deprecated: false + deprecationDate: + description: Bgee at Lausanne + id: 1214 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100543 + name: Bgee at Lausanne + official: false + providerCode: sib + resourceHomeUrl: http://bgee.unil.ch/bgee/bgee + sampleId: EHDAA:2185 + urlPattern: http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_id={$id}&organ_children=on + sampleId: EHDAA:2185 + - created: 2019-06-11T14:17:16.688+0000 + deprecated: false + deprecationDate: + description: BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps. + id: 1215 + mirId: MIR:00000421 + modified: 2019-06-11T14:17:16.688+0000 + name: BioCarta Pathway + namespaceEmbeddedInLui: false + pattern: ^([hm]\_)?\w+Pathway$ + prefix: biocarta.pathway + resources: + - deprecated: false + deprecationDate: + description: BioCarta Pathway at NCI + id: 1216 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 442 + location: + countryCode: US + countryName: United States + name: National Cancer Institute, Center for Bioinformatics, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100544 + name: BioCarta Pathway at NCI + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.biocarta.com/ + sampleId: h_aktPathway + urlPattern: https://cgap.nci.nih.gov/Pathways/BioCarta/{$id} + sampleId: h_aktPathway + - created: 2019-06-11T14:17:16.858+0000 + deprecated: false + deprecationDate: + description: "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\r\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation." + id: 1217 + mirId: MIR:00000422 + modified: 2019-06-11T14:17:16.858+0000 + name: PANTHER Pathway Component + namespaceEmbeddedInLui: false + pattern: ^G|P|U|C|S\d{5}$ + prefix: panther.pthcmp + resources: + - deprecated: false + deprecationDate: + description: PANTHER Pathway Component at USC (Los Angeles) + id: 1218 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 94 + location: + countryCode: US + countryName: United States + name: Keck School of Medicine, University of Southern California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100545 + name: PANTHER Pathway Component at USC (Los Angeles) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.pantherdb.org/ + sampleId: P00266 + urlPattern: http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession={$id} + sampleId: P00266 + - created: 2019-06-11T14:17:17.038+0000 + deprecated: false + deprecationDate: + description: Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues. + id: 1219 + mirId: MIR:00000423 + modified: 2019-06-11T14:17:17.038+0000 + name: Golm Metabolome Database Profile + namespaceEmbeddedInLui: false + pattern: ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ + prefix: gmd.profile + resources: + - deprecated: false + deprecationDate: + description: Golm Metabolome Database (Profile) at Max Planck Institute of Molecular Plant Physiology + id: 1220 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 806 + location: + countryCode: DE + countryName: Germany + name: Max Planck Institute of Molecular Plant Physiology, Potsdam + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100546 + name: Golm Metabolome Database (Profile) at Max Planck Institute of Molecular Plant Physiology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://gmd.mpimp-golm.mpg.de/ + sampleId: 10b38aaf-b977-4950-85b8-f4775f66658d + urlPattern: http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId={$id} + sampleId: 10b38aaf-b977-4950-85b8-f4775f66658d + - created: 2019-06-11T14:17:17.255+0000 + deprecated: false + deprecationDate: + description: Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra. + id: 1221 + mirId: MIR:00000424 + modified: 2019-06-11T14:17:17.255+0000 + name: Golm Metabolome Database GC-MS spectra + namespaceEmbeddedInLui: false + pattern: ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ + prefix: gmd.gcms + resources: + - deprecated: false + deprecationDate: + description: Golm Metabolome Database (GC-MS Spectra) at Max Planck Institute of Molecular Plant Physiology + id: 1222 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 806 + location: + countryCode: DE + countryName: Germany + name: Max Planck Institute of Molecular Plant Physiology, Potsdam + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100547 + name: Golm Metabolome Database (GC-MS Spectra) at Max Planck Institute of Molecular Plant Physiology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://gmd.mpimp-golm.mpg.de/ + sampleId: 53d583d8-40c6-40e1-9296-23f821cd77a5 + urlPattern: http://gmd.mpimp-golm.mpg.de/Spectrums/{$id} + sampleId: 53d583d8-40c6-40e1-9296-23f821cd77a5 + - created: 2019-06-11T14:17:17.475+0000 + deprecated: false + deprecationDate: + description: Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances. + id: 1223 + mirId: MIR:00000425 + modified: 2019-06-11T14:17:17.475+0000 + name: Golm Metabolome Database Reference Substance + namespaceEmbeddedInLui: false + pattern: ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ + prefix: gmd.ref + resources: + - deprecated: false + deprecationDate: + description: Golm Metabolome Database (Reference Substance) at Max Planck Institute of Molecular Plant Physiology + id: 1224 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 806 + location: + countryCode: DE + countryName: Germany + name: Max Planck Institute of Molecular Plant Physiology, Potsdam + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100548 + name: Golm Metabolome Database (Reference Substance) at Max Planck Institute of Molecular Plant Physiology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://gmd.mpimp-golm.mpg.de/ + sampleId: 8cf84adb-b4db-4807-ac98-0004247c35df + urlPattern: http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/{$id} + sampleId: 8cf84adb-b4db-4807-ac98-0004247c35df + - created: 2019-06-11T14:17:17.661+0000 + deprecated: false + deprecationDate: + description: Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes. This collection references analytes. + id: 1225 + mirId: MIR:00000426 + modified: 2019-06-11T14:17:17.661+0000 + name: Golm Metabolome Database Analyte + namespaceEmbeddedInLui: false + pattern: ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ + prefix: gmd.analyte + resources: + - deprecated: false + deprecationDate: + description: Golm Metabolome Database (Analyte) at Max Planck Institute of Molecular Plant Physiology + id: 1226 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 806 + location: + countryCode: DE + countryName: Germany + name: Max Planck Institute of Molecular Plant Physiology, Potsdam + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100549 + name: Golm Metabolome Database (Analyte) at Max Planck Institute of Molecular Plant Physiology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://gmd.mpimp-golm.mpg.de/ + sampleId: 4f0fa9b6-514f-4ff4-98cc-0009bc08eb80 + urlPattern: http://gmd.mpimp-golm.mpg.de/Analytes/{$id} + sampleId: 4f0fa9b6-514f-4ff4-98cc-0009bc08eb80 + - created: 2019-06-11T14:17:17.850+0000 + deprecated: false + deprecationDate: + description: IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules. + id: 1227 + mirId: MIR:00000427 + modified: 2019-06-11T14:17:17.850+0000 + name: IntAct Molecule + namespaceEmbeddedInLui: false + pattern: ^EBI\-[0-9]+$ + prefix: intact.molecule + resources: + - deprecated: false + deprecationDate: + description: IntAct Molecule at EBI + id: 1228 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100550 + name: IntAct Molecule at EBI + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/intact/ + sampleId: EBI-366083 + urlPattern: https://www.ebi.ac.uk/intact/molecule/{$id} + sampleId: EBI-366083 + - created: 2019-06-11T14:17:18.034+0000 + deprecated: false + deprecationDate: + description: The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources. + id: 1229 + mirId: MIR:00000428 + modified: 2019-06-11T14:17:18.034+0000 + name: DEPOD + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9]+$ + prefix: depod + resources: + - deprecated: false + deprecationDate: + description: DEPOD at EMBL + id: 1231 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1230 + location: + countryCode: DE + countryName: Germany + name: European Molecular Biology Laboratory EMBL, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100551 + name: DEPOD at EMBL + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.depod.bioss.uni-freiburg.de + sampleId: PTPN1 + urlPattern: http://www.depod.bioss.uni-freiburg.de/showp.php?gene={$id} + sampleId: PTPN1 + - created: 2019-06-11T14:17:18.324+0000 + deprecated: false + deprecationDate: + description: Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways. + id: 1232 + mirId: MIR:00000429 + modified: 2019-06-11T14:17:18.324+0000 + name: Cell Signaling Technology Pathways + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9_-]+$ + prefix: cst + resources: + - deprecated: false + deprecationDate: + description: CST Pathways at Cell Signaling Technology + id: 1234 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1233 + location: + countryCode: US + countryName: United States + name: Cell Signaling Technology, Inc., Danvers, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100552 + name: CST Pathways at Cell Signaling Technology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.cellsignal.com/pathways/index.html + sampleId: Akt_PKB + urlPattern: http://www.cellsignal.com/reference/pathway/{$id}.html + sampleId: Akt_PKB + - created: 2019-06-11T14:17:19.049+0000 + deprecated: false + deprecationDate: + description: Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information. + id: 1241 + mirId: MIR:00000432 + modified: 2019-06-11T14:17:19.049+0000 + name: Phytozome Locus + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9]+$ + prefix: phytozome.locus + resources: + - deprecated: false + deprecationDate: + description: Phytozome Locus at Joint Genome Institute + id: 1243 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1242 + location: + countryCode: US + countryName: United States + name: Joint Genome Institute, California, and the Center for Integrative Genomics, Lausanne + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100556 + name: Phytozome Locus at Joint Genome Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.phytozome.net/ + sampleId: Glyma0021s00410 + urlPattern: http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:{$id} + sampleId: Glyma0021s00410 + - created: 2019-06-11T14:17:19.310+0000 + deprecated: false + deprecationDate: + description: "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments." + id: 1244 + mirId: MIR:00000433 + modified: 2019-06-11T14:17:19.310+0000 + name: SubtiList + namespaceEmbeddedInLui: false + pattern: ^BG\d+$ + prefix: subtilist + resources: + - deprecated: false + deprecationDate: + description: SubtiList at Pasteur Institute + id: 1246 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1245 + location: + countryCode: FR + countryName: France + name: Pasteur Institute, Paris + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100557 + name: SubtiList at Pasteur Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://genolist.pasteur.fr/SubtiList/ + sampleId: BG11523 + urlPattern: http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+{$id} + sampleId: BG11523 + - created: 2019-06-11T14:17:19.532+0000 + deprecated: false + deprecationDate: + description: DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read. + id: 1247 + mirId: MIR:00000434 + modified: 2019-06-11T14:17:19.532+0000 + name: DailyMed + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9-]+ + prefix: dailymed + resources: + - deprecated: false + deprecationDate: + description: DailyMed at NLM + id: 1249 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1248 + location: + countryCode: US + countryName: United States + name: U.S. National Library of Medicine, Bethesda, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100558 + name: DailyMed at NLM + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://dailymed.nlm.nih.gov/dailymed/ + sampleId: 973a9333-fec7-46dd-8eb5-25738f06ee54 + urlPattern: https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid={$id} + sampleId: 973a9333-fec7-46dd-8eb5-25738f06ee54 + - created: 2019-06-11T14:17:19.846+0000 + deprecated: false + deprecationDate: + description: SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER. + id: 1250 + mirId: MIR:00000435 + modified: 2019-06-11T14:17:19.846+0000 + name: SIDER Drug + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: sider.drug + resources: + - deprecated: false + deprecationDate: + description: SIDER Drug v2 at EMBL (Heidelberg) + id: 1252 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1251 + location: + countryCode: DE + countryName: Germany + name: Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100559 + name: SIDER Drug v2 at EMBL (Heidelberg) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://sideeffects.embl.de/ + sampleId: '2244' + urlPattern: http://sideeffects.embl.de/drugs/{$id}/ + sampleId: '2244' + - created: 2019-06-11T14:17:20.079+0000 + deprecated: false + deprecationDate: + description: SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER. + id: 1253 + mirId: MIR:00000436 + modified: 2019-06-11T14:17:20.079+0000 + name: SIDER Side Effect + namespaceEmbeddedInLui: false + pattern: ^C\d+$ + prefix: sider.effect + resources: + - deprecated: false + deprecationDate: + description: SIDER Side Effect v2 at EMBL (Heidelberg) + id: 1254 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1251 + location: + countryCode: DE + countryName: Germany + name: Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100560 + name: SIDER Side Effect v2 at EMBL (Heidelberg) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://sideeffects.embl.de/ + sampleId: C0017565 + urlPattern: http://sideeffects.embl.de/se/{$id}/ + sampleId: C0017565 + - created: 2019-06-11T14:17:20.303+0000 + deprecated: false + deprecationDate: + description: WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process. + id: 1255 + mirId: MIR:00000437 + modified: 2019-06-11T14:17:20.303+0000 + name: WikiGenes + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: wikigenes + resources: + - deprecated: false + deprecationDate: + description: WikiGenes at Massachusetts Institute of Technology + id: 1257 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1256 + location: + countryCode: US + countryName: United States + name: Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100567 + name: WikiGenes at Massachusetts Institute of Technology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.wikigenes.org/ + sampleId: '3771877' + urlPattern: http://www.wikigenes.org/e/gene/e/{$id}.html + sampleId: '3771877' + - created: 2019-06-11T14:17:20.539+0000 + deprecated: false + deprecationDate: + description: Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae. + id: 1258 + mirId: MIR:00000438 + modified: 2019-06-11T14:17:20.539+0000 + name: Broad Fungal Genome Initiative + namespaceEmbeddedInLui: false + pattern: ^S\d+$ + prefix: broad + resources: + - deprecated: false + deprecationDate: + description: Broad Fungal Genome Initiative at Broad Institute + id: 1260 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1259 + location: + countryCode: US + countryName: United States + name: Broad Institute of MIT and Harvard, Cambridge, Massachuchetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100569 + name: Broad Fungal Genome Initiative at Broad Institute + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/ + sampleId: S7000002168151102 + urlPattern: https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp={$id} + sampleId: S7000002168151102 + - created: 2019-06-11T14:17:20.763+0000 + deprecated: false + deprecationDate: + description: The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world. + id: 1261 + mirId: MIR:00000439 + modified: 2019-06-11T14:17:20.763+0000 + name: Coriell Cell Repositories + namespaceEmbeddedInLui: false + pattern: ^[A-Z]{2}\d+$ + prefix: coriell + resources: + - deprecated: false + deprecationDate: + description: Coriell Cell Repositories at Coriell Institute + id: 1263 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1262 + location: + countryCode: US + countryName: United States + name: Coriell Institute for Medical Research, New Jersey + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100570 + name: Coriell Cell Repositories at Coriell Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ccr.coriell.org/ + sampleId: GM17027 + urlPattern: http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref={$id} + sampleId: GM17027 + - created: 2019-06-11T14:17:20.995+0000 + deprecated: false + deprecationDate: + description: The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded. + id: 1264 + mirId: MIR:00000440 + modified: 2019-06-11T14:17:20.995+0000 + name: CORUM + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: corum + resources: + - deprecated: false + deprecationDate: + description: CORUM at Institute for Bioinformatics and Systems Biology (Germany) + id: 1266 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1265 + location: + countryCode: DE + countryName: Germany + name: Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum M&uuml;nchen-German Research Center for Environmental Health, Neuherberg + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100571 + name: CORUM at Institute for Bioinformatics and Systems Biology (Germany) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://mips.helmholtz-muenchen.de/genre/proj/corum/ + sampleId: '100' + urlPattern: https://mips.helmholtz-muenchen.de/corum/?id={$id} + sampleId: '100' + - created: 2019-06-11T14:17:21.287+0000 + deprecated: false + deprecationDate: + description: EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes. + id: 1267 + mirId: MIR:00000442 + modified: 2019-06-11T14:17:21.287+0000 + name: EcoliWiki + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9-]+$ + prefix: ecoliwiki + resources: + - deprecated: false + deprecationDate: + description: EcoliWiki at Texas Agrilife Research + id: 1269 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1268 + location: + countryCode: US + countryName: United States + name: Texas Agrilife Research, Texas A&M University College Station + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100573 + name: EcoliWiki at Texas Agrilife Research + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ecoliwiki.net/colipedia/ + sampleId: aaeA + urlPattern: http://ecoliwiki.net/colipedia/index.php/{$id}:Gene + sampleId: aaeA + - created: 2019-06-11T14:17:21.507+0000 + deprecated: false + deprecationDate: + description: Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome. + id: 1270 + mirId: MIR:00000443 + modified: 2019-06-11T14:17:21.507+0000 + name: Genome Properties + namespaceEmbeddedInLui: false + pattern: ^GenProp\d+$ + prefix: genprop + resources: + - deprecated: false + deprecationDate: + description: Genome Properties + id: 1271 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100910 + name: Genome Properties + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/interpro/genomeproperties/ + sampleId: GenProp0699 + urlPattern: https://www.ebi.ac.uk/interpro/genomeproperties/#{$id} + sampleId: GenProp0699 + - created: 2019-06-11T14:17:21.690+0000 + deprecated: false + deprecationDate: + description: JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration. + id: 1272 + mirId: MIR:00000444 + modified: 2019-06-11T14:17:21.690+0000 + name: JSTOR + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: jstor + resources: + - deprecated: false + deprecationDate: + description: JSTOR Online + id: 1274 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1273 + location: + countryCode: US + countryName: United States + name: Ithaka Harbors, Inc., New York + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100575 + name: JSTOR Online + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.jstor.org/ + sampleId: '3075966' + urlPattern: http://www.jstor.org/stable/{$id} + sampleId: '3075966' + - created: 2019-06-11T14:17:21.919+0000 + deprecated: false + deprecationDate: + description: A structured controlled vocabulary of the adult anatomy of the mouse (Mus) + id: 1275 + mirId: MIR:00000445 + modified: 2019-06-11T14:17:21.919+0000 + name: Mouse Adult Gross Anatomy + namespaceEmbeddedInLui: true + pattern: ^MA:\d+$ + prefix: ma + resources: + - deprecated: false + deprecationDate: + description: Mouse Adult Gross Anatomy through BioPortal + id: 1276 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100576 + name: Mouse Adult Gross Anatomy through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/MA + sampleId: '0002502' + urlPattern: http://purl.bioontology.org/ontology/MA/MA:{$id} + - deprecated: false + deprecationDate: + description: Mouse Adult Gross Anatomy through OLS + id: 1277 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100577 + name: Mouse Adult Gross Anatomy through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/ma + sampleId: '0002502' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/ma/terms?obo_id=MA:{$id} + - deprecated: false + deprecationDate: + description: Mouse Adult Gross Anatomy at The Jackson Laboratory + id: 1279 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1278 + location: + countryCode: US + countryName: United States + name: The Jackson Laboratory, Bar Harbor, Maine + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100578 + name: Mouse Adult Gross Anatomy at The Jackson Laboratory + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.informatics.jax.org/ + sampleId: '0002502' + urlPattern: http://www.informatics.jax.org/searches/AMA.cgi?id=MA:{$id} + sampleId: '0002502' + - created: 2019-06-11T14:17:22.748+0000 + deprecated: false + deprecationDate: + description: Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide). + id: 1283 + mirId: MIR:00000447 + modified: 2019-06-11T14:17:22.748+0000 + name: Unimod + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: unimod + resources: + - deprecated: false + deprecationDate: + description: Unimod at Matrix Sciences Ltd. + id: 1285 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1284 + location: + countryCode: GB + countryName: United Kingdom + name: Matrix Science Ltd., London + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100581 + name: Unimod at Matrix Sciences Ltd. + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.unimod.org/ + sampleId: '1200' + urlPattern: http://www.unimod.org/modifications_view.php?editid1={$id} + sampleId: '1200' + - created: 2019-06-11T14:17:22.962+0000 + deprecated: false + deprecationDate: + description: The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis. + id: 1286 + mirId: MIR:00000448 + modified: 2019-06-11T14:17:22.962+0000 + name: VBRC + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: vbrc + resources: + - deprecated: false + deprecationDate: + description: VBRC at University of Alabama + id: 1288 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1287 + location: + countryCode: US + countryName: United States + name: University of Alabama, Birmingham and the University of Victoria, British Columbia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100582 + name: VBRC at University of Alabama + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://vbrc.org/ + sampleId: '35742' + urlPattern: http://vbrc.org/gene_detail.asp?gene_id={$id} + sampleId: '35742' + - created: 2019-06-11T14:17:23.207+0000 + deprecated: false + deprecationDate: + description: ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures. + id: 1289 + mirId: MIR:00000449 + modified: 2019-06-11T14:17:23.207+0000 + name: ViralZone + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: viralzone + resources: + - deprecated: false + deprecationDate: + description: ViralZone at SIB + id: 1291 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100583 + name: ViralZone at SIB + official: false + providerCode: sib + resourceHomeUrl: http://www.expasy.org/viralzone/ + sampleId: '992' + urlPattern: http://viralzone.expasy.org/all_by_protein/{$id}.html + sampleId: '992' + - created: 2019-06-11T14:17:23.659+0000 + deprecated: false + deprecationDate: + description: Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes. + id: 1294 + mirId: MIR:00000451 + modified: 2019-06-11T14:17:23.659+0000 + name: Rat Genome Database qTL + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: rgd.qtl + resources: + - deprecated: false + deprecationDate: + description: Rat Genome Database qTL at Medical College of Wisconsin + id: 1296 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1295 + location: + countryCode: US + countryName: United States + name: Medical College of Wisconsin, Milwaukee, Wisconsin + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100586 + name: Rat Genome Database qTL at Medical College of Wisconsin + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://rgd.mcw.edu/ + sampleId: '1354581' + urlPattern: http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id={$id} + sampleId: '1354581' + - created: 2019-06-11T14:17:23.876+0000 + deprecated: false + deprecationDate: + description: Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology. + id: 1297 + mirId: MIR:00000452 + modified: 2019-06-11T14:17:23.876+0000 + name: Rat Genome Database strain + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: rgd.strain + resources: + - deprecated: false + deprecationDate: + description: Rat Genome Database strain at Medical College of Wisconsin + id: 1298 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1295 + location: + countryCode: US + countryName: United States + name: Medical College of Wisconsin, Milwaukee, Wisconsin + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100587 + name: Rat Genome Database strain at Medical College of Wisconsin + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://rgd.mcw.edu/ + sampleId: '5688061' + urlPattern: http://rgd.mcw.edu/rgdweb/report/strain/main.html?id={$id} + sampleId: '5688061' + - created: 2019-06-11T14:17:24.062+0000 + deprecated: false + deprecationDate: + description: DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes. + id: 1299 + mirId: MIR:00000453 + modified: 2019-06-11T14:17:24.062+0000 + name: DOOR + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: door + resources: + - deprecated: false + deprecationDate: + description: DOOR v1 at University of Georgia + id: 1301 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1300 + location: + countryCode: US + countryName: United States + name: Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100588 + name: DOOR v1 at University of Georgia + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://csbl.bmb.uga.edu/DOOR/operon.php + sampleId: '1398574' + urlPattern: http://csbl.bmb.uga.edu/DOOR/operon.php?id={$id} + sampleId: '1398574' + - created: 2019-06-11T14:17:24.294+0000 + deprecated: false + deprecationDate: + description: The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced. + id: 1302 + mirId: MIR:00000454 + modified: 2019-06-11T14:17:24.294+0000 + name: Degradome Database + namespaceEmbeddedInLui: false + pattern: ^[AMCST][0-9x][0-9]$ + prefix: degradome + resources: + - deprecated: false + deprecationDate: + description: Degradome Database at + id: 1304 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1303 + location: + countryCode: ES + countryName: Spain + name: Departamento de Bioqu&amp;iacute;mica y Biolog&amp;iacute;a Molecular, Facultad de Medicina, Universidad de Oviedo + rorId: + location: + countryCode: ES + countryName: Spain + mirId: MIR:00100589 + name: Degradome Database at + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://degradome.uniovi.es/ + sampleId: Ax1 + urlPattern: http://degradome.uniovi.es/cgi-bin/protease/{$id} + sampleId: Ax1 + - created: 2019-06-11T14:17:24.514+0000 + deprecated: false + deprecationDate: + description: The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins. + id: 1305 + mirId: MIR:00000455 + modified: 2019-06-11T14:17:24.514+0000 + name: DBD + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: dbd + resources: + - deprecated: false + deprecationDate: + description: DBD at MRC Laboratory of Molecular Biology + id: 1306 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1026 + location: + countryCode: GB + countryName: United Kingdom + name: MRC Laboratory of Molecular Biology, Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100590 + name: DBD at MRC Laboratory of Molecular Biology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.transcriptionfactor.org/ + sampleId: '0045310' + urlPattern: http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:{$id}+cat:DBD + sampleId: '0045310' + - created: 2019-06-11T14:17:24.701+0000 + deprecated: false + deprecationDate: + description: DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals. + id: 1307 + mirId: MIR:00000456 + modified: 2019-06-11T14:17:24.701+0000 + name: DATF + namespaceEmbeddedInLui: false + pattern: ^AT[1-5]G\d{5}(\.\d+)?$ + prefix: datf + resources: + - deprecated: false + deprecationDate: + description: DATF through PlantTFDB + id: 1309 + institution: + description: >- + Peking University is a comprehensive and national key university. + The campus, known as "Yan Yuan"ļ¼ˆthe garden of Yanļ¼‰, is situated at + Haidian District in the western suburb of Beijing, with a total + area of 2,743,532 square metres (or 274 hectares). It stands near + to the Yuanmingyuan Garden and the Summer Palace. + + Peking University is proud of its outstanding faculty, including 48 members of the Chinese Academy of Sciences (CAS), 9 members of the Chinese Academy of Engineering (CAE), and 21 members of the Third World Academy of Sciences (TWAS). + homeUrl: http://english.pku.edu.cn/ + id: 1612 + location: + countryCode: CN + countryName: China + name: Peking University + rorId: + location: + countryCode: CN + countryName: China + mirId: MIR:00100591 + name: DATF through PlantTFDB + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://datf.cbi.pku.edu.cn/ + sampleId: AT1G01030.1 + urlPattern: http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did={$id} + sampleId: AT1G01030.1 + - created: 2019-06-11T14:17:24.936+0000 + deprecated: false + deprecationDate: + description: The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands. + id: 1310 + mirId: MIR:00000457 + modified: 2019-06-11T14:17:24.936+0000 + name: IUPHAR ligand + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: iuphar.ligand + resources: + - deprecated: false + deprecationDate: + description: IUPHAR ligand at University of Edinburgh + id: 1311 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 827 + location: + countryCode: GB + countryName: United Kingdom + name: Centre for Cardiovascular Science, University of Edinburgh, Edinburgh + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100592 + name: IUPHAR ligand at University of Edinburgh + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all + sampleId: '1755' + urlPattern: http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId={$id} + sampleId: '1755' + - created: 2019-06-11T14:17:25.144+0000 + deprecated: false + deprecationDate: + description: Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier. + id: 1312 + mirId: MIR:00000458 + modified: 2019-06-11T14:17:25.144+0000 + name: Molbase + namespaceEmbeddedInLui: false + pattern: ^(\d{1,7}\-\d{2}\-\d)|([A-Za-z0-9\+\-\_]+)$ + prefix: molbase + resources: + - deprecated: false + deprecationDate: + description: Molbase at Chinese Academy of Sciences + id: 1314 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1313 + location: + countryCode: CN + countryName: China + name: Chinese Academy of Sciences, Xuhui District Shanghai + rorId: + location: + countryCode: CN + countryName: China + mirId: MIR:00100593 + name: Molbase at Chinese Academy of Sciences + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.molbase.com/ + sampleId: 128796-39-4 + urlPattern: http://www.molbase.com/en/index.php?app=search&search_keyword={$id} + sampleId: 128796-39-4 + - created: 2019-06-11T14:17:25.397+0000 + deprecated: false + deprecationDate: + description: The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions. + id: 1315 + mirId: MIR:00000459 + modified: 2019-06-11T14:17:25.397+0000 + name: YRC PDR + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: yrcpdr + resources: + - deprecated: false + deprecationDate: + description: YRC PDR at University of Washington + id: 1317 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1316 + location: + countryCode: US + countryName: United States + name: Department of Biochemistry, University of Washington, Seattle + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100594 + name: YRC PDR at University of Washington + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.yeastrc.org/pdr/ + sampleId: '2673500' + urlPattern: http://yeastrc.org/pdr/viewProtein.do?id={$id} + sampleId: '2673500' + - created: 2019-06-11T14:17:25.610+0000 + deprecated: false + deprecationDate: + description: The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521]. + id: 1318 + mirId: MIR:00000460 + modified: 2019-06-11T14:17:25.610+0000 + name: Yeast Intron Database v3 + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9]+$ + prefix: yid + resources: + - deprecated: false + deprecationDate: + description: Yeast Intron Database version 3 at Baskin School of Engineering + id: 1320 + institution: + description: > + UC Santa Cruz opened in 1965 with 650 students. During the + 2018-2019 academic year, 16,983 undergraduate and 1,822 graduate + students were enrolled. + homeUrl: https://www.ucsc.edu + id: 1319 + location: + countryCode: US + countryName: United States + name: University of California, Santa Cruz + rorId: https://ror.org/03s65by71 + location: + countryCode: US + countryName: United States + mirId: MIR:00100595 + name: Yeast Intron Database version 3 at Baskin School of Engineering + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://compbio.soe.ucsc.edu/yeast_introns.html + sampleId: SNR17A + urlPattern: http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName={$id} + sampleId: SNR17A + - created: 2019-06-11T14:17:25.854+0000 + deprecated: false + deprecationDate: + description: Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data. + id: 1321 + mirId: MIR:00000461 + modified: 2019-06-11T14:17:25.854+0000 + name: FuncBase Fly + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: funcbase.fly + resources: + - deprecated: false + deprecationDate: + description: FuncBase Fly at Harvard Medical School + id: 1323 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1322 + location: + countryCode: US + countryName: United States + name: Harvard Medical School, Boston, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100596 + name: FuncBase Fly at Harvard Medical School + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://func.mshri.on.ca/fly + sampleId: '10194' + urlPattern: http://func.mshri.on.ca/fly/genes/list_functional_scores/{$id} + sampleId: '10194' + - created: 2019-06-11T14:17:26.074+0000 + deprecated: false + deprecationDate: + description: Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data. + id: 1324 + mirId: MIR:00000462 + modified: 2019-06-11T14:17:26.074+0000 + name: FuncBase Human + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: funcbase.human + resources: + - deprecated: false + deprecationDate: + description: FuncBase Human at Harvard Medical School + id: 1325 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1322 + location: + countryCode: US + countryName: United States + name: Harvard Medical School, Boston, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100597 + name: FuncBase Human at Harvard Medical School + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://func.mshri.on.ca/human/ + sampleId: '119514' + urlPattern: http://func.mshri.on.ca/human/genes/list_functional_scores/{$id} + sampleId: '119514' + - created: 2019-06-11T14:17:26.285+0000 + deprecated: false + deprecationDate: + description: Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse. + id: 1326 + mirId: MIR:00000463 + modified: 2019-06-11T14:17:26.285+0000 + name: FuncBase Mouse + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: funcbase.mouse + resources: + - deprecated: false + deprecationDate: + description: FuncBase Mouse at Harvard Medical School + id: 1327 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1322 + location: + countryCode: US + countryName: United States + name: Harvard Medical School, Boston, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100598 + name: FuncBase Mouse at Harvard Medical School + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://func.mshri.on.ca/mouse/ + sampleId: '1351341' + urlPattern: http://func.mshri.on.ca/mouse/genes/list_functional_scores/{$id} + sampleId: '1351341' + - created: 2019-06-11T14:18:18.874+0000 + deprecated: false + deprecationDate: + description: The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets. + id: 1881 + mirId: MIR:00000679 + modified: 2019-06-11T14:18:18.874+0000 + name: The cBioPortal for Cancer Genomics + namespaceEmbeddedInLui: false + pattern: ^[a-z0-9\_]+$ + prefix: cbioportal + resources: + - deprecated: false + deprecationDate: + description: The cBioPortal for Cancer Genomics + id: 1883 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1882 + location: + countryCode: US + countryName: United States + name: Memorial Sloan Kettering Cancer Center + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100909 + name: The cBioPortal for Cancer Genomics + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.cbioportal.org + sampleId: laml_tcga_pub + urlPattern: http://www.cbioportal.org/study?id={$id}#summary + sampleId: laml_tcga_pub + - created: 2019-06-11T14:17:26.470+0000 + deprecated: false + deprecationDate: + description: Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast. + id: 1328 + mirId: MIR:00000464 + modified: 2019-06-11T14:17:26.470+0000 + name: FuncBase Yeast + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: funcbase.yeast + resources: + - deprecated: false + deprecationDate: + description: FuncBase Yeast at Harvard Medical School + id: 1329 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1322 + location: + countryCode: US + countryName: United States + name: Harvard Medical School, Boston, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100599 + name: FuncBase Yeast at Harvard Medical School + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://func.mshri.on.ca/yeast + sampleId: '2701' + urlPattern: http://func.mshri.on.ca/yeast/genes/list_functional_scores/{$id} + sampleId: '2701' + - created: 2019-06-11T14:17:26.654+0000 + deprecated: false + deprecationDate: + description: The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition. + id: 1330 + mirId: MIR:00000465 + modified: 2019-06-11T14:17:26.654+0000 + name: YDPM + namespaceEmbeddedInLui: false + pattern: ^Y[A-Z]{2}\d+[CW]$ + prefix: ydpm + resources: + - deprecated: false + deprecationDate: + description: YDPM at Stanford University School of Medicine + id: 1332 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1331 + location: + countryCode: US + countryName: United States + name: Stanford University School of Medicine, Stanford, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100600 + name: YDPM at Stanford University School of Medicine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www-deletion.stanford.edu/YDPM/ + sampleId: YAL001C + urlPattern: http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist={$id} + sampleId: YAL001C + - created: 2019-06-11T14:17:26.886+0000 + deprecated: false + deprecationDate: + description: WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes. + id: 1333 + mirId: MIR:00000466 + modified: 2019-06-11T14:17:26.886+0000 + name: WormBase RNAi + namespaceEmbeddedInLui: false + pattern: ^WBRNAi\d{8}$ + prefix: wb.rnai + resources: + - deprecated: false + deprecationDate: + description: WormBase RNAi + id: 1334 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100601 + name: WormBase RNAi + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.wormbase.org/ + sampleId: WBRNAi00086878 + urlPattern: https://www.wormbase.org/species/c_elegans/rnai/{$id} + sampleId: WBRNAi00086878 + - created: 2019-06-11T14:17:27.086+0000 + deprecated: false + deprecationDate: + description: The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity. + id: 1335 + mirId: MIR:00000468 + modified: 2019-06-11T14:17:27.086+0000 + name: PASS2 + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: pass2 + resources: + - deprecated: false + deprecationDate: + description: PASS2 at National centre for Biological Sciences (India) + id: 1337 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1336 + location: + countryCode: IN + countryName: India + name: National centre for Biological Sciences, TIFR, GKVK campus, Bangalore, Karnataka + rorId: + location: + countryCode: IN + countryName: India + mirId: MIR:00100603 + name: PASS2 at National centre for Biological Sciences (India) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://caps.ncbs.res.in/pass2/ + sampleId: '46977' + urlPattern: http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id={$id} + sampleId: '46977' + - created: 2019-06-11T14:17:27.338+0000 + deprecated: false + deprecationDate: + description: ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements. + id: 1338 + mirId: MIR:00000469 + modified: 2019-06-11T14:17:27.338+0000 + name: ICEberg element + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: iceberg.element + resources: + - deprecated: false + deprecationDate: + description: ICEberg element at Shanghai Jiaotong University + id: 1340 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1339 + location: + countryCode: CN + countryName: China + name: State Key Laboratory of Microbial Metabolism and School of Life Sciences &amp;amp;amp; Biotechnology, Shanghai Jiaotong University, Shanghai + rorId: + location: + countryCode: CN + countryName: China + mirId: MIR:00100604 + name: ICEberg element at Shanghai Jiaotong University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://db-mml.sjtu.edu.cn/ICEberg/ + sampleId: '100' + urlPattern: http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id={$id} + sampleId: '100' + - created: 2019-06-11T14:17:27.601+0000 + deprecated: false + deprecationDate: + description: ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families. + id: 1341 + mirId: MIR:00000470 + modified: 2019-06-11T14:17:27.601+0000 + name: ICEberg family + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: iceberg.family + resources: + - deprecated: false + deprecationDate: + description: ICEberg family at Shanghai Jiaotong University + id: 1343 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1342 + location: + countryCode: CN + countryName: China + name: State Key Laboratory of Microbial Metabolism and School of Life Sciences &amp; Biotechnology, Shanghai Jiaotong University, Shanghai + rorId: + location: + countryCode: CN + countryName: China + mirId: MIR:00100605 + name: ICEberg family at Shanghai Jiaotong University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://db-mml.sjtu.edu.cn/ICEberg/ + sampleId: '1' + urlPattern: http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id={$id} + sampleId: '1' + - created: 2019-06-11T14:17:27.811+0000 + deprecated: false + deprecationDate: + description: VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus. + id: 1344 + mirId: MIR:00000471 + modified: 2019-06-11T14:17:27.811+0000 + name: VFDB Genus + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: vfdb.genus + resources: + - deprecated: false + deprecationDate: + description: VFDB Genus at Institute of Pathogen Biology + id: 1346 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1345 + location: + countryCode: CN + countryName: China + name: State Key Laboratory for Molecular Virology and Genetic Engineering, Institute of Pathogen Biology, Chinese Academy Medical Sciences and Peking Union Medical College, Beijing + rorId: + location: + countryCode: CN + countryName: China + mirId: MIR:00100606 + name: VFDB Genus at Institute of Pathogen Biology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.mgc.ac.cn/VFs/ + sampleId: Chlamydia + urlPattern: http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus={$id} + sampleId: Chlamydia + - created: 2019-06-11T14:17:28.027+0000 + deprecated: false + deprecationDate: + description: VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes. + id: 1347 + mirId: MIR:00000472 + modified: 2019-06-11T14:17:28.027+0000 + name: VFDB Gene + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: vfdb.gene + resources: + - deprecated: false + deprecationDate: + description: VFDB Gene at Institute of Pathogen Biology + id: 1348 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1345 + location: + countryCode: CN + countryName: China + name: State Key Laboratory for Molecular Virology and Genetic Engineering, Institute of Pathogen Biology, Chinese Academy Medical Sciences and Peking Union Medical College, Beijing + rorId: + location: + countryCode: CN + countryName: China + mirId: MIR:00100607 + name: VFDB Gene at Institute of Pathogen Biology + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.mgc.ac.cn/VFs/ + sampleId: VFG2154 + urlPattern: http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID={$id} + sampleId: VFG2154 + - created: 2019-06-11T14:17:28.224+0000 + deprecated: false + deprecationDate: + description: MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013. + id: 1349 + mirId: MIR:00000473 + modified: 2019-06-11T14:17:28.224+0000 + name: MeSH 2013 + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9]+$ + prefix: mesh.2013 + resources: + - deprecated: false + deprecationDate: + description: MeSH 2013 at National Library of Medicine + id: 1350 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 792 + location: + countryCode: US + countryName: United States + name: U.S. National Library of Medicine, National Institute of Health, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100608 + name: MeSH 2013 at National Library of Medicine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.nlm.nih.gov/mesh/ + sampleId: '17165' + urlPattern: http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index={$id}&view=expanded + sampleId: '17165' + - created: 2019-06-11T14:17:28.414+0000 + deprecated: false + deprecationDate: + description: KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules. + id: 1351 + mirId: MIR:00000474 + modified: 2019-06-11T14:17:28.414+0000 + name: KEGG Module + namespaceEmbeddedInLui: false + pattern: ^([a-z]{3,5}_)?M\d{5}$ + prefix: kegg.module + resources: + - deprecated: false + deprecationDate: + description: KEGG Module at Kyoto University Bioinformatics Center + id: 1352 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 367 + location: + countryCode: JP + countryName: Japan + name: Department of Computational Biology, University of Tokyo, Tokyo + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100609 + name: KEGG Module at Kyoto University Bioinformatics Center + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.kegg.jp/kegg/module.html + sampleId: M00002 + urlPattern: http://www.kegg.jp/entry/{$id} + sampleId: M00002 + - created: 2019-06-11T14:17:28.601+0000 + deprecated: false + deprecationDate: + description: The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system. + id: 1353 + mirId: MIR:00000475 + modified: 2019-06-11T14:17:28.601+0000 + name: KEGG Disease + namespaceEmbeddedInLui: false + pattern: ^H\d+$ + prefix: kegg.disease + resources: + - deprecated: false + deprecationDate: + description: KEGG Disease at Kyoto University Bioinformatics Center + id: 1354 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 705 + location: + countryCode: JP + countryName: Japan + name: Kyoto University Bioinformatics Center, Kyoto + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100610 + name: KEGG Disease at Kyoto University Bioinformatics Center + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.genome.jp/kegg/disease/ + sampleId: H00076 + urlPattern: http://www.kegg.jp/entry/{$id} + sampleId: H00076 + - created: 2019-06-11T14:17:28.795+0000 + deprecated: false + deprecationDate: + description: MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language. + id: 1355 + mirId: MIR:00000476 + modified: 2019-06-11T14:17:28.795+0000 + name: MedlinePlus + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: medlineplus + resources: + - deprecated: false + deprecationDate: + description: MedlinePlus at NCBI + id: 1356 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100611 + name: MedlinePlus at NCBI + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.nlm.nih.gov/medlineplus/ + sampleId: '002804' + urlPattern: http://www.nlm.nih.gov/medlineplus/ency/article/{$id}.htm + sampleId: '002804' + - created: 2019-06-11T14:17:29.214+0000 + deprecated: false + deprecationDate: + description: GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes. + id: 1360 + mirId: MIR:00000478 + modified: 2019-06-11T14:17:29.214+0000 + name: GlycoEpitope + namespaceEmbeddedInLui: false + pattern: ^EP\d{4}$ + prefix: glycoepitope + resources: + - deprecated: false + deprecationDate: + description: GlycoEpitope at Ritsumeikan University + id: 1362 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1361 + location: + countryCode: JP + countryName: Japan + name: Kawasaki laboratory, Research Center for Glycobiotechnology, Ritsumeikan University + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100613 + name: GlycoEpitope at Ritsumeikan University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.glycoepitope.jp/epitopes/ + sampleId: EP0311 + urlPattern: https://www.glycoepitope.jp/epitopes/{$id} + sampleId: EP0311 + - created: 2019-06-11T14:17:29.437+0000 + deprecated: false + deprecationDate: + description: JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc. + id: 1363 + mirId: MIR:00000479 + modified: 2019-06-11T14:17:29.437+0000 + name: JCGGDB + namespaceEmbeddedInLui: false + pattern: ^JCGG-STR\d{6}$ + prefix: jcggdb + resources: + - deprecated: false + deprecationDate: + description: JCGGDB at Advanced Science Institute (Japan) + id: 1365 + institution: + description: Established by RIKEN in April 2008, based on the DRI (Discovery Research Institute) and the FRS (Frontier Research System). ASI is unique since it is structured as comprehensive system supporting the full range of scientific fields including high energy/nuclear/astro-physics, condensed matter physics, chemistry, electronic engineering, biology and medicine. + homeUrl: http://www.riken.jp/en/about/reports/evaluation/asi/ + id: 1364 + location: + countryCode: JP + countryName: Japan + name: RIKEN Advanced Science Institute + rorId: https://ror.org/030vbmf58 + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100614 + name: JCGGDB at Advanced Science Institute (Japan) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://jcggdb.jp/index_en.html + sampleId: JCGG-STR008690 + urlPattern: http://jcggdb.jp/idb/jcggdb/{$id} + sampleId: JCGG-STR008690 + - created: 2019-06-11T14:17:29.649+0000 + deprecated: false + deprecationDate: + description: NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions. + id: 1366 + mirId: MIR:00000480 + modified: 2019-06-11T14:17:29.649+0000 + name: NONCODE v4 Gene + namespaceEmbeddedInLui: false + pattern: ^NONHSAG\d{5}$ + prefix: noncodev4.gene + resources: + - deprecated: false + deprecationDate: + description: NONCODE v4 Gene at Chinese Academy of Sciences + id: 1367 + institution: + description: The Chinese Academy of Sciences is the linchpin of Chinaā€™s drive to explore and harness high technology and the natural sciences for the benefit of China and the world. CAS brings together scientists and engineers from China and around the world to address both theoretical and applied problems using world-class scientific and management approaches. + homeUrl: http://english.cas.cn/ + id: 737 + location: + countryCode: CN + countryName: China + name: Chinese Academy of Sciences + rorId: https://ror.org/034t30j35 + location: + countryCode: CN + countryName: China + mirId: MIR:00100616 + name: NONCODE v4 Gene at Chinese Academy of Sciences + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.bioinfo.org/NONCODEv4/ + sampleId: NONHSAG00001 + urlPattern: http://www.bioinfo.org/NONCODEv4/show_gene.php?id={$id} + sampleId: NONHSAG00001 + - created: 2019-06-11T14:18:19.150+0000 + deprecated: false + deprecationDate: + description: An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster. + id: 1884 + mirId: MIR:00000680 + modified: 2019-06-11T14:18:19.150+0000 + name: Virtual Fly Brain + namespaceEmbeddedInLui: false + pattern: ^[0-9a-zA-Z]{8}$ + prefix: vfb + resources: + - deprecated: false + deprecationDate: + description: Virtual Fly Brain + id: 1886 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1885 + location: + countryCode: GB + countryName: United Kingdom + name: The University of Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100911 + name: Virtual Fly Brain + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://VirtualFlyBrain.org + sampleId: '00000001' + urlPattern: http://virtualflybrain.org/reports/{$id} + sampleId: '00000001' + - created: 2019-06-11T14:17:29.833+0000 + deprecated: false + deprecationDate: + description: NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts. + id: 1368 + mirId: MIR:00000481 + modified: 2019-06-11T14:17:29.833+0000 + name: NONCODE v4 Transcript + namespaceEmbeddedInLui: false + pattern: ^NONHSAT\d{6}$ + prefix: noncodev4.rna + resources: + - deprecated: false + deprecationDate: + description: NONCODE v4 Transcript at Chinese Academy of Sciences + id: 1369 + institution: + description: The Chinese Academy of Sciences is the linchpin of Chinaā€™s drive to explore and harness high technology and the natural sciences for the benefit of China and the world. CAS brings together scientists and engineers from China and around the world to address both theoretical and applied problems using world-class scientific and management approaches. + homeUrl: http://english.cas.cn/ + id: 737 + location: + countryCode: CN + countryName: China + name: Chinese Academy of Sciences + rorId: https://ror.org/034t30j35 + location: + countryCode: CN + countryName: China + mirId: MIR:00100617 + name: NONCODE v4 Transcript at Chinese Academy of Sciences + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.bioinfo.org/NONCODEv4/ + sampleId: NONHSAT000001 + urlPattern: http://www.bioinfo.org/NONCODEv4/show_rna.php?id={$id} + sampleId: NONHSAT000001 + - created: 2019-06-11T14:17:30.027+0000 + deprecated: false + deprecationDate: + description: Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information. + id: 1370 + mirId: MIR:00000482 + modified: 2019-06-11T14:17:30.027+0000 + name: Oryzabase Gene + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: oryzabase.gene + resources: + - deprecated: false + deprecationDate: + description: Oryzabase v4 Gene at National Institute of Genetics (Japan) + id: 1372 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1371 + location: + countryCode: JP + countryName: Japan + name: Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100618 + name: Oryzabase v4 Gene at National Institute of Genetics (Japan) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.shigen.nig.ac.jp/rice/oryzabaseV4/ + sampleId: '117' + urlPattern: http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/{$id} + sampleId: '117' + - created: 2019-06-11T14:17:30.248+0000 + deprecated: false + deprecationDate: + description: Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information. + id: 1373 + mirId: MIR:00000483 + modified: 2019-06-11T14:17:30.248+0000 + name: Oryzabase Mutant + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: oryzabase.mutant + resources: + - deprecated: false + deprecationDate: + description: Oryzabase v4 Mutant at National Institute of Genetics (Japan) + id: 1374 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1371 + location: + countryCode: JP + countryName: Japan + name: Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100619 + name: Oryzabase v4 Mutant at National Institute of Genetics (Japan) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.shigen.nig.ac.jp/rice/oryzabaseV4/ + sampleId: '21393' + urlPattern: http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/{$id} + sampleId: '21393' + - created: 2019-06-11T14:17:30.425+0000 + deprecated: false + deprecationDate: + description: Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information. + id: 1375 + mirId: MIR:00000484 + modified: 2019-06-11T14:17:30.425+0000 + name: Oryzabase Strain + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: oryzabase.strain + resources: + - deprecated: false + deprecationDate: + description: Oryzabase v4 Strain at National Institute of Genetics (Japan) + id: 1376 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1371 + location: + countryCode: JP + countryName: Japan + name: Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100620 + name: Oryzabase v4 Strain at National Institute of Genetics (Japan) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.shigen.nig.ac.jp/rice/oryzabaseV4/ + sampleId: '1' + urlPattern: http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/{$id} + sampleId: '1' + - created: 2019-06-11T14:17:30.616+0000 + deprecated: false + deprecationDate: + description: Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information. + id: 1377 + mirId: MIR:00000485 + modified: 2019-06-11T14:17:30.616+0000 + name: Oryzabase Stage + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: oryzabase.stage + resources: + - deprecated: false + deprecationDate: + description: Oryzabase v4 Stage at National Institute of Genetics (Japan) + id: 1378 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1371 + location: + countryCode: JP + countryName: Japan + name: Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100621 + name: Oryzabase v4 Stage at National Institute of Genetics (Japan) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.shigen.nig.ac.jp/rice/oryzabaseV4/ + sampleId: '34' + urlPattern: http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/{$id} + sampleId: '34' + - created: 2019-06-11T14:17:30.833+0000 + deprecated: false + deprecationDate: + description: Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information. + id: 1379 + mirId: MIR:00000486 + modified: 2019-06-11T14:17:30.833+0000 + name: Oryza Tag Line + namespaceEmbeddedInLui: false + pattern: ^A[A-Z]+\d+$ + prefix: otl + resources: + - deprecated: false + deprecationDate: + description: Oryza Tag Line at CIRAD-INRA-SUPAGRO-UMI + id: 1381 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1380 + location: + countryCode: FR + countryName: France + name: CIRAD-INRA-SUPAGRO-UMII, Biological Systems Department, Montpellier + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100622 + name: Oryza Tag Line at CIRAD-INRA-SUPAGRO-UMI + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://oryzatagline.cirad.fr/ + sampleId: AADB12 + urlPattern: http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line={$id} + sampleId: AADB12 + - created: 2019-06-11T14:17:31.086+0000 + deprecated: false + deprecationDate: + description: The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI. + id: 1382 + mirId: MIR:00000487 + modified: 2019-06-11T14:17:31.086+0000 + name: Gene Wiki + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: genewiki + resources: + - deprecated: false + deprecationDate: + description: Gene Wiki through BioGPS + id: 1383 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1111 + location: + countryCode: US + countryName: United States + name: Wikimedia Foundation, San Francisco, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100623 + name: Gene Wiki through BioGPS + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://en.wikipedia.org/wiki/Gene_Wiki + sampleId: '1017' + urlPattern: http://plugins.biogps.org/cgi-bin/wp.cgi?id={$id} + sampleId: '1017' + - created: 2019-06-11T14:17:31.315+0000 + deprecated: false + deprecationDate: + description: PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species. + id: 1384 + mirId: MIR:00000488 + modified: 2019-06-11T14:17:31.315+0000 + name: PaxDb Organism + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: paxdb.organism + resources: + - deprecated: false + deprecationDate: + description: PaxDb v3 at University of Zurich + id: 1386 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1385 + location: + countryCode: CH + countryName: Switzerland + name: Institute of Molecular Life Sciences, University of Zurich, Zurich + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100624 + name: PaxDb v3 at University of Zurich + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://pax-db.org/ + sampleId: '9606' + urlPattern: http://pax-db.org/#!species/{$id} + sampleId: '9606' + - created: 2019-06-11T14:17:31.566+0000 + deprecated: false + deprecationDate: + description: PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels. + id: 1387 + mirId: MIR:00000489 + modified: 2019-06-11T14:17:31.566+0000 + name: PaxDb Protein + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: paxdb.protein + resources: + - deprecated: false + deprecationDate: + description: PaxDb v3 at University of Zurich + id: 1388 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1385 + location: + countryCode: CH + countryName: Switzerland + name: Institute of Molecular Life Sciences, University of Zurich, Zurich + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100625 + name: PaxDb v3 at University of Zurich + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://pax-db.org/ + sampleId: '977869' + urlPattern: http://pax-db.org/#!protein/{$id} + sampleId: '977869' + - created: 2019-06-11T14:17:31.784+0000 + deprecated: false + deprecationDate: + description: The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands. + id: 1389 + mirId: MIR:00000490 + modified: 2019-06-11T14:17:31.784+0000 + name: Protein Data Bank Ligand + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9]+$ + prefix: pdb.ligand + resources: + - deprecated: false + deprecationDate: + description: PDB Ligand at RCSB + id: 1390 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 79 + location: + countryCode: US + countryName: United States + name: Rutgers, The State University of New Jersey + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100626 + name: PDB Ligand at RCSB + official: false + providerCode: rcsb + resourceHomeUrl: http://www.pdb.org/ + sampleId: TRQ + urlPattern: http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId={$id} + - deprecated: false + deprecationDate: + description: PDB Ligand at Protein Databank in Europe (PDBe) + id: 1391 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100650 + name: PDB Ligand at Protein Databank in Europe (PDBe) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.pdbe.org/ + sampleId: TRQ + urlPattern: https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/{$id} + sampleId: TRQ + - created: 2019-06-11T14:17:32.129+0000 + deprecated: false + deprecationDate: + description: The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors. + id: 1392 + mirId: MIR:00000491 + modified: 2019-06-11T14:17:32.129+0000 + name: MEROPS Inhibitor + namespaceEmbeddedInLui: false + pattern: ^I\d{2}\.\d{3}$ + prefix: merops.inhibitor + resources: + - deprecated: false + deprecationDate: + description: MEROPS Inhibitor at Sanger Institute + id: 1394 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1393 + location: + countryCode: GB + countryName: United Kingdom + name: Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100632 + name: MEROPS Inhibitor at Sanger Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://merops.sanger.ac.uk/index.htm + sampleId: I31.952 + urlPattern: http://merops.sanger.ac.uk/cgi-bin/pepsum?id={$id} + sampleId: I31.952 + - created: 2019-06-11T14:17:32.366+0000 + deprecated: false + deprecationDate: + description: Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology. + id: 1395 + mirId: MIR:00000492 + modified: 2019-06-11T14:17:32.366+0000 + name: Animal Diversity Web + namespaceEmbeddedInLui: false + pattern: ^[A-Z_a-z]+$ + prefix: adw + resources: + - deprecated: false + deprecationDate: + description: Animal Diversity Web at University of Michigan + id: 1397 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1396 + location: + countryCode: US + countryName: United States + name: University of Michigan Museum of Zoology, Ann Arbor, Michigan + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100633 + name: Animal Diversity Web at University of Michigan + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://animaldiversity.org/ + sampleId: Lycalopex_vetulus + urlPattern: https://animaldiversity.org/accounts/{$id}/ + sampleId: Lycalopex_vetulus + - created: 2019-06-11T14:17:32.633+0000 + deprecated: false + deprecationDate: + description: The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors. + id: 1398 + mirId: MIR:00000493 + modified: 2019-06-11T14:17:32.633+0000 + name: GLIDA GPCR + namespaceEmbeddedInLui: false + pattern: ^[A-Z-_0-9]+$ + prefix: glida.gpcr + resources: + - deprecated: false + deprecationDate: + description: GLIDA GPCR at Kyoto University + id: 1400 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1399 + location: + countryCode: JP + countryName: Japan + name: Department of Genomic Drug Discovery Science, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100634 + name: GLIDA GPCR at Kyoto University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ + sampleId: ACM1_HUMAN + urlPattern: http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id={$id} + sampleId: ACM1_HUMAN + - created: 2019-06-11T14:17:32.872+0000 + deprecated: false + deprecationDate: + description: The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands. + id: 1401 + mirId: MIR:00000494 + modified: 2019-06-11T14:17:32.872+0000 + name: GLIDA Ligand + namespaceEmbeddedInLui: false + pattern: ^L\d+$ + prefix: glida.ligand + resources: + - deprecated: false + deprecationDate: + description: GLIDA Ligand at Kyoto University + id: 1402 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1399 + location: + countryCode: JP + countryName: Japan + name: Department of Genomic Drug Discovery Science, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100635 + name: GLIDA Ligand at Kyoto University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ + sampleId: L000001 + urlPattern: http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id={$id} + sampleId: L000001 + - created: 2019-06-11T14:17:33.087+0000 + deprecated: false + deprecationDate: + description: GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank. + id: 1403 + mirId: MIR:00000495 + modified: 2019-06-11T14:17:33.087+0000 + name: GRSDB + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: grsdb + resources: + - deprecated: false + deprecationDate: + description: GRSDB v2 at Ramapo College of New Jersey + id: 1405 + institution: + description: Established in 1969, Ramapo College offers bachelorā€™s degrees in the arts, business, humanities, social sciences and the sciences, as well as in professional studies, which include business, elementary education, nursing and social work. In fall 2020, the College will be enrolling students in both a bachelorā€™s and masterā€™s degree in data science, only one of two higher education institutions in New Jersey to offer both programs. + homeUrl: https://www.ramapo.edu/ + id: 1404 + location: + countryCode: US + countryName: United States + name: Ramapo College + rorId: https://ror.org/03s2x9d90 + location: + countryCode: US + countryName: United States + mirId: MIR:00100636 + name: GRSDB v2 at Ramapo College of New Jersey + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bioinformatics.ramapo.edu/GRSDB2/ + sampleId: '10142' + urlPattern: http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID={$id} + sampleId: '10142' + - created: 2019-06-11T14:17:37.549+0000 + deprecated: false + deprecationDate: + description: The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination. + id: 1447 + mirId: MIR:00000513 + modified: 2019-06-11T14:17:37.549+0000 + name: ProteomeXchange + namespaceEmbeddedInLui: false + pattern: ^(R)?PXD\d{6}$ + prefix: px + resources: + - deprecated: false + deprecationDate: + description: ProteomeXchange at Seattle + id: 1449 + institution: + description: ISB was created in 2000 as the first-ever institute dedicated to systems biology. + homeUrl: https://isbscience.org/ + id: 193 + location: + countryCode: US + countryName: United States + name: Institute for Systems Biology + rorId: https://ror.org/02tpgw303 + location: + countryCode: US + countryName: United States + mirId: MIR:00100660 + name: ProteomeXchange at Seattle + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.proteomexchange.org/ + sampleId: PXD000500 + urlPattern: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID={$id} + sampleId: PXD000500 + - created: 2019-06-11T14:17:37.784+0000 + deprecated: false + deprecationDate: + description: Vocabulary used in the RDF representation of SBML models. + id: 1450 + mirId: MIR:00000514 + modified: 2019-06-11T14:17:37.784+0000 + name: SBML RDF Vocabulary + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z]+$ + prefix: biomodels.vocabulary + resources: + - deprecated: false + deprecationDate: + description: Vocabulary via BioModels.net + id: 1452 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100661 + name: Vocabulary via BioModels.net + official: false + providerCode: ebi + resourceHomeUrl: http://biomodels.net/rdf/vocabulary.rdf + sampleId: rateRule + urlPattern: http://biomodels.net/rdf/vocabulary.rdf#{$id} + sampleId: rateRule + - created: 2019-06-11T14:17:33.340+0000 + deprecated: false + deprecationDate: + description: The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification. + id: 1406 + mirId: MIR:00000496 + modified: 2019-06-11T14:17:33.340+0000 + name: F-SNP + namespaceEmbeddedInLui: false + pattern: ^rs\d+$ + prefix: fsnp + resources: + - deprecated: false + deprecationDate: + description: F-SNP at Queen's University (Canada) + id: 1408 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1407 + location: + countryCode: CA + countryName: Canada + name: Computational Biology and Machine Learning Lab, School of Computing, Queen's University, Kingston, Ontario + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100637 + name: F-SNP at Queen's University (Canada) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://compbio.cs.queensu.ca/F-SNP/ + sampleId: rs17852708 + urlPattern: http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val={$id} + sampleId: rs17852708 + - created: 2019-06-11T14:17:33.593+0000 + deprecated: false + deprecationDate: + description: The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders. + id: 1409 + mirId: MIR:00000497 + modified: 2019-06-11T14:17:33.593+0000 + name: Homeodomain Research + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: hdr + resources: + - deprecated: false + deprecationDate: + description: Homeodomain Research at National Human Genome Research Institute (NIH) + id: 1411 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1410 + location: + countryCode: US + countryName: United States + name: Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100638 + name: Homeodomain Research at National Human Genome Research Institute (NIH) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://research.nhgri.nih.gov/apps/homeodomain/web/ + sampleId: '63' + urlPattern: http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id={$id} + sampleId: '63' + - created: 2019-06-11T14:17:33.862+0000 + deprecated: false + deprecationDate: + description: Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings. + id: 1412 + mirId: MIR:00000498 + modified: 2019-06-11T14:17:33.862+0000 + name: NORINE + namespaceEmbeddedInLui: false + pattern: ^NOR\d+$ + prefix: norine + resources: + - deprecated: false + deprecationDate: + description: NORINE at Computer Science Laboratory of Lille + id: 1414 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1413 + location: + countryCode: FR + countryName: France + name: Computer Science Laboratory of Lille, INRIA and ProBioGEM, University of Sciences and Technologies of Lille, Lille + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100639 + name: NORINE at Computer Science Laboratory of Lille + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bioinfo.lifl.fr/norine/ + sampleId: NOR00681 + urlPattern: http://bioinfo.lifl.fr/norine/result.jsp?ID={$id} + sampleId: NOR00681 + - created: 2019-06-11T14:17:34.104+0000 + deprecated: false + deprecationDate: + description: The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs). + id: 1415 + mirId: MIR:00000499 + modified: 2019-06-11T14:17:34.104+0000 + name: Olfactory Receptor Database + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: ordb + resources: + - deprecated: false + deprecationDate: + description: Olfactory Receptor Database at Yale University School of Medicine + id: 1417 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1416 + location: + countryCode: US + countryName: United States + name: Center for Medical Informatics, Yale University School of Medicine, New Haven, Connecticut + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100640 + name: Olfactory Receptor Database at Yale University School of Medicine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://senselab.med.yale.edu/OrDB/ + sampleId: '8497' + urlPattern: http://senselab.med.yale.edu/ORDB/Data/{$id} + sampleId: '8497' + - created: 2019-06-11T14:17:34.340+0000 + deprecated: false + deprecationDate: + description: OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors + id: 1418 + mirId: MIR:00000500 + modified: 2019-06-11T14:17:34.340+0000 + name: Odor Molecules DataBase + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: odor + resources: + - deprecated: false + deprecationDate: + description: Odor Molecules DataBase at Yale University School of Medicine + id: 1419 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1416 + location: + countryCode: US + countryName: United States + name: Center for Medical Informatics, Yale University School of Medicine, New Haven, Connecticut + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100641 + name: Odor Molecules DataBase at Yale University School of Medicine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://senselab.med.yale.edu/OdorDB + sampleId: '74' + urlPattern: http://senselab.med.yale.edu/OdorDB/Data/{$id}/?db=5 + sampleId: '74' + - created: 2019-06-11T14:17:34.528+0000 + deprecated: false + deprecationDate: + description: Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites. + id: 1420 + mirId: MIR:00000501 + modified: 2019-06-11T14:17:34.528+0000 + name: P3DB Protein + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: p3db.protein + resources: + - deprecated: false + deprecationDate: + description: P3DB Protein at University of Missouri + id: 1422 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1421 + location: + countryCode: US + countryName: United States + name: Department of Computer Science, University of Missouri, Columbia, Missouri + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100642 + name: P3DB Protein at University of Missouri + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.p3db.org/ + sampleId: '70' + urlPattern: http://www.p3db.org/protein.php?id={$id}&ref=0 + sampleId: '70' + - created: 2019-06-11T14:17:34.763+0000 + deprecated: false + deprecationDate: + description: Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins. + id: 1423 + mirId: MIR:00000502 + modified: 2019-06-11T14:17:34.763+0000 + name: P3DB Site + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: p3db.site + resources: + - deprecated: false + deprecationDate: + description: P3DB Site at University of Missouri + id: 1424 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1421 + location: + countryCode: US + countryName: United States + name: Department of Computer Science, University of Missouri, Columbia, Missouri + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100643 + name: P3DB Site at University of Missouri + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.p3db.org/ + sampleId: '65' + urlPattern: http://www.p3db.org/phosphosite.php?id={$id}&ref=0 + sampleId: '65' + - created: 2019-06-11T14:17:35.217+0000 + deprecated: false + deprecationDate: + description: The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases. + id: 1425 + mirId: MIR:00000503 + modified: 2019-06-11T14:17:35.217+0000 + name: TOPDB + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9]+$ + prefix: topdb + resources: + - deprecated: false + deprecationDate: + description: TOPDB at Hungarian Academy of Sciences + id: 1427 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1426 + location: + countryCode: HU + countryName: Hungary + name: Institute of Enzymology, Hungarian Academy of Sciences, Budapest + rorId: + location: + countryCode: HU + countryName: Hungary + mirId: MIR:00100644 + name: TOPDB at Hungarian Academy of Sciences + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://topdb.enzim.hu/ + sampleId: AP00378 + urlPattern: http://topdb.enzim.hu/?m=show&id={$id} + sampleId: AP00378 + - created: 2019-06-11T14:17:35.485+0000 + deprecated: false + deprecationDate: + description: The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs. + id: 1428 + mirId: MIR:00000504 + modified: 2019-06-11T14:17:35.485+0000 + name: Animal Genome Cattle QTL + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: cattleqtldb + resources: + - deprecated: false + deprecationDate: + description: Animal QTL Cattle at Iowa State University + id: 1430 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1429 + location: + countryCode: US + countryName: United States + name: Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100645 + name: Animal QTL Cattle at Iowa State University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.animalgenome.org/QTLdb + sampleId: '4685' + urlPattern: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id} + sampleId: '4685' + - created: 2019-06-11T14:17:35.752+0000 + deprecated: false + deprecationDate: + description: The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs. + id: 1431 + mirId: MIR:00000505 + modified: 2019-06-11T14:17:35.752+0000 + name: Animal Genome Chicken QTL + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: chickenqtldb + resources: + - deprecated: false + deprecationDate: + description: Animal QTL Chicken at Iowa State University + id: 1432 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1429 + location: + countryCode: US + countryName: United States + name: Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100646 + name: Animal QTL Chicken at Iowa State University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.animalgenome.org/QTLdb + sampleId: '14362' + urlPattern: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id} + sampleId: '14362' + - created: 2019-06-11T14:17:35.969+0000 + deprecated: false + deprecationDate: + description: The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs. + id: 1433 + mirId: MIR:00000506 + modified: 2019-06-11T14:17:35.969+0000 + name: Animal Genome Pig QTL + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: pigqtldb + resources: + - deprecated: false + deprecationDate: + description: Animal QTL Pig at Iowa State University + id: 1434 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1429 + location: + countryCode: US + countryName: United States + name: Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100647 + name: Animal QTL Pig at Iowa State University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.animalgenome.org/QTLdb + sampleId: '14' + urlPattern: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id} + sampleId: '14' + - created: 2019-06-11T14:17:36.183+0000 + deprecated: false + deprecationDate: + description: The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs. + id: 1435 + mirId: MIR:00000507 + modified: 2019-06-11T14:17:36.183+0000 + name: Animal Genome Sheep QTL + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: sheepqtldb + resources: + - deprecated: false + deprecationDate: + description: Animal QTL Sheep at Iowa State University + id: 1436 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1429 + location: + countryCode: US + countryName: United States + name: Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100648 + name: Animal QTL Sheep at Iowa State University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.animalgenome.org/QTLdb + sampleId: '19803' + urlPattern: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id} + sampleId: '19803' + - created: 2019-06-11T14:17:36.384+0000 + deprecated: false + deprecationDate: + description: Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene. + id: 1437 + mirId: MIR:00000508 + modified: 2019-06-11T14:17:36.384+0000 + name: Gramene Growth Stage Ontology + namespaceEmbeddedInLui: true + pattern: ^GRO\:\d+$ + prefix: gramene.growthstage + resources: + - deprecated: false + deprecationDate: + description: Gramene Growth Stage Ontology at Cold Spring Harbor + id: 1438 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 556 + location: + countryCode: US + countryName: United States + name: Cold Spring Harbor Laboratory, New York + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100649 + name: Gramene Growth Stage Ontology at Cold Spring Harbor + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.gramene.org/ + sampleId: '0007133' + urlPattern: http://www.gramene.org/db/ontology/search?id=GRO:{$id} + sampleId: '0007133' + - created: 2019-06-11T14:17:36.594+0000 + deprecated: false + deprecationDate: + description: The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples. + id: 1439 + mirId: MIR:00000510 + modified: 2019-06-11T14:17:36.594+0000 + name: MGnify Sample + namespaceEmbeddedInLui: false + pattern: ^[A-Z]+[0-9]+$ + prefix: mgnify.samp + resources: + - deprecated: false + deprecationDate: + description: MGnify Sample + id: 1440 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100656 + name: MGnify Sample + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/metagenomics + sampleId: SRS086444 + urlPattern: https://www.ebi.ac.uk/metagenomics/samples/{$id} + sampleId: SRS086444 + - created: 2019-06-11T14:17:36.823+0000 + deprecated: false + deprecationDate: + description: The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets. + id: 1441 + mirId: MIR:00000511 + modified: 2019-06-11T14:17:36.823+0000 + name: European Genome-phenome Archive Study + namespaceEmbeddedInLui: false + pattern: ^EGAS\d{11}$ + prefix: ega.study + resources: + - deprecated: false + deprecationDate: + description: EGA Study at European Bioinformatics Institute + id: 1442 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100657 + name: EGA Study at European Bioinformatics Institute + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/ega/studies + sampleId: EGAS00000000001 + urlPattern: https://www.ebi.ac.uk/ega/studies/{$id} + - deprecated: false + deprecationDate: + description: EGA Study through OmicsDI + id: 1443 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100851 + name: EGA Study through OmicsDI + official: false + providerCode: omicsdi + resourceHomeUrl: https://www.omicsdi.org/ + sampleId: EGAS00000000001 + urlPattern: https://www.omicsdi.org/dataset/ega/{$id} + sampleId: EGAS00000000001 + - created: 2019-06-11T14:17:37.233+0000 + deprecated: false + deprecationDate: + description: The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'. + id: 1444 + mirId: MIR:00000512 + modified: 2019-06-11T14:17:37.233+0000 + name: European Genome-phenome Archive Dataset + namespaceEmbeddedInLui: false + pattern: ^EGAD\d{11}$ + prefix: ega.dataset + resources: + - deprecated: false + deprecationDate: + description: EGA Dataset at European Bioinformatics Institute + id: 1445 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100658 + name: EGA Dataset at European Bioinformatics Institute + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/ega/dataset + sampleId: EGAD00000000001 + urlPattern: https://www.ebi.ac.uk/ega/datasets/{$id} + - deprecated: false + deprecationDate: + description: EGA Dataset through OmicsDI + id: 1446 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100852 + name: EGA Dataset through OmicsDI + official: false + providerCode: omicsdi + resourceHomeUrl: https://www.omicsdi.org/ + sampleId: EGAD00000000001 + urlPattern: https://www.omicsdi.org/dataset/ega/{$id} + sampleId: EGAD00000000001 + - created: 2019-06-11T14:17:38.030+0000 + deprecated: false + deprecationDate: + description: The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects. + id: 1453 + mirId: MIR:00000515 + modified: 2019-06-11T14:17:38.030+0000 + name: PRIDE Project + namespaceEmbeddedInLui: false + pattern: ^P(X|R)D\d{6}$ + prefix: pride.project + resources: + - deprecated: false + deprecationDate: + description: PRIDE Project at EBI + id: 1454 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100662 + name: PRIDE Project at EBI + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/pride/ + sampleId: PXD000440 + urlPattern: https://www.ebi.ac.uk/pride/archive/projects/{$id} + - deprecated: false + deprecationDate: + description: PRIDE Project through OmicsDI + id: 1455 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100858 + name: PRIDE Project through OmicsDI + official: false + providerCode: omicsdi + resourceHomeUrl: https://www.omicsdi.org/ + sampleId: PXD000440 + urlPattern: https://www.omicsdi.org/dataset/pride/{$id} + sampleId: PXD000440 + - created: 2019-06-11T14:17:38.379+0000 + deprecated: false + deprecationDate: + description: The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information. + id: 1456 + mirId: MIR:00000516 + modified: 2019-06-11T14:17:38.379+0000 + name: Antibody Registry + namespaceEmbeddedInLui: false + pattern: ^\d{6}$ + prefix: antibodyregistry + resources: + - deprecated: false + deprecationDate: + description: Antibody Registry at University of California + id: 1458 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1457 + location: + countryCode: US + countryName: United States + name: Neuroscience Information Framework, University of California, San Diego, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100664 + name: Antibody Registry at University of California + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://antibodyregistry.org/ + sampleId: '493771' + urlPattern: http://antibodyregistry.org/AB_{$id} + sampleId: '493771' + - created: 2019-06-11T14:17:38.625+0000 + deprecated: false + deprecationDate: + description: The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features. + id: 1459 + mirId: MIR:00000517 + modified: 2019-06-11T14:17:38.625+0000 + name: Mathematical Modelling Ontology + namespaceEmbeddedInLui: false + pattern: ^MAMO_\d{7}$ + prefix: mamo + resources: + - deprecated: false + deprecationDate: + description: MAMO through BioPortal + id: 1460 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100665 + name: MAMO through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/MAMO + sampleId: MAMO_0000026 + urlPattern: http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/{$id} + - deprecated: false + deprecationDate: + description: MaMO through OLS + id: 1461 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100758 + name: MaMO through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/mamo + sampleId: MAMO_0000026 + urlPattern: https://www.ebi.ac.uk/ols/ontologies/mamo/terms?short_form={$id} + sampleId: MAMO_0000026 + - created: 2019-06-11T14:17:38.985+0000 + deprecated: false + deprecationDate: + description: The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies. + id: 1462 + mirId: MIR:00000518 + modified: 2019-06-11T14:17:38.985+0000 + name: Plant Environment Ontology + namespaceEmbeddedInLui: true + pattern: ^(P)?EO\:\d{7}$ + prefix: eo + resources: + - deprecated: false + deprecationDate: + description: Plant Environment Ontology through Gramene + id: 1463 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 556 + location: + countryCode: US + countryName: United States + name: Cold Spring Harbor Laboratory, New York + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100667 + name: Plant Environment Ontology through Gramene + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://archive.gramene.org/db/ontology/search_term?id=EO:0007359 + sampleId: '0007404' + urlPattern: http://archive.gramene.org/db/ontology/search?query=EO:{$id} + - deprecated: false + deprecationDate: + description: Plant Environment Ontology through BioPortal + id: 1464 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100668 + name: Plant Environment Ontology through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/PECO + sampleId: '0007404' + urlPattern: http://purl.bioontology.org/ontology/PECO/EO:{$id} + - deprecated: false + deprecationDate: + description: Plant Environment Ontology through OLS + id: 1465 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100669 + name: Plant Environment Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/eo + sampleId: '0007404' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/eo/terms?obo_id=EO:{$id} + sampleId: '0007404' + - created: 2019-06-11T14:17:39.487+0000 + deprecated: false + deprecationDate: + description: Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets. + id: 1466 + mirId: MIR:00000519 + modified: 2019-06-11T14:17:39.487+0000 + name: Identifiers.org Terms + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z]+$ + prefix: idot + resources: + - deprecated: false + deprecationDate: + description: IdoT via biomodels.net + id: 1467 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100670 + name: IdoT via biomodels.net + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://identifiers.org/ + sampleId: identifierPattern + urlPattern: https://biomodels.net/vocab/idot.rdf#{$id} + sampleId: identifierPattern + - created: 2019-06-11T14:17:39.906+0000 + deprecated: false + deprecationDate: + description: The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460]. + id: 1470 + mirId: MIR:00000521 + modified: 2019-06-11T14:17:39.906+0000 + name: Yeast Intron Database v4.3 + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9]+$ + prefix: yeastintron + resources: + - deprecated: false + deprecationDate: + description: Yeast Intron Database version 4.3 at Baskin School of Engineering + id: 1471 + institution: + description: > + UC Santa Cruz opened in 1965 with 650 students. During the + 2018-2019 academic year, 16,983 undergraduate and 1,822 graduate + students were enrolled. + homeUrl: https://www.ucsc.edu + id: 1319 + location: + countryCode: US + countryName: United States + name: University of California, Santa Cruz + rorId: https://ror.org/03s65by71 + location: + countryCode: US + countryName: United States + mirId: MIR:00100673 + name: Yeast Intron Database version 4.3 at Baskin School of Engineering + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://intron.ucsc.edu/yeast4.3/ + sampleId: SNR17A + urlPattern: http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName={$id} + sampleId: SNR17A + - created: 2019-06-11T14:17:40.104+0000 + deprecated: false + deprecationDate: + description: The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes. + id: 1472 + mirId: MIR:00000522 + modified: 2019-06-11T14:17:40.104+0000 + name: Antibiotic Resistance Genes Database + namespaceEmbeddedInLui: false + pattern: ^[A-Z_]{3}[0-9]{4,}$ + prefix: ardb + resources: + - deprecated: false + deprecationDate: + description: ARDB at University of Maryland + id: 1474 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1473 + location: + countryCode: US + countryName: United States + name: Center for Bioinformatics and Computational Biology, University of Maryland, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100678 + name: ARDB at University of Maryland + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ardb.cbcb.umd.edu/ + sampleId: CAE46076 + urlPattern: http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term={$id} + sampleId: CAE46076 + - created: 2019-06-11T14:17:40.344+0000 + deprecated: false + deprecationDate: + description: ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins. + id: 1475 + mirId: MIR:00000524 + modified: 2019-06-11T14:17:40.344+0000 + name: ProteomicsDB Protein + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: proteomicsdb.protein + resources: + - deprecated: false + deprecationDate: + description: Proteomics DB Protein at Center for Integrated Protein Science + id: 1477 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1476 + location: + countryCode: DE + countryName: Germany + name: Center for Integrated Protein Science, Munich, + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100680 + name: Proteomics DB Protein at Center for Integrated Protein Science + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.proteomicsdb.org/#human + sampleId: '53504' + urlPattern: https://www.proteomicsdb.org/#human/proteinDetails/{$id}/summary + sampleId: '53504' + - created: 2019-06-11T14:17:40.583+0000 + deprecated: false + deprecationDate: + description: ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein. + id: 1478 + mirId: MIR:00000525 + modified: 2019-06-11T14:17:40.583+0000 + name: ProteomicsDB Peptide + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: proteomicsdb.peptide + resources: + - deprecated: false + deprecationDate: + description: Proteomics DB Peptide at Center for Integrated Protein Science + id: 1480 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1479 + location: + countryCode: DE + countryName: Germany + name: Center for Integrated Protein Science, Munich + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100681 + name: Proteomics DB Peptide at Center for Integrated Protein Science + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.proteomicsdb.org/#peptideSearch + sampleId: '53504' + urlPattern: https://www.proteomicsdb.org/#human/proteinDetails/{$id}/peptides/ + sampleId: '53504' + - created: 2019-06-11T14:17:40.825+0000 + deprecated: false + deprecationDate: + description: The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins. + id: 1481 + mirId: MIR:00000526 + modified: 2019-06-11T14:17:40.825+0000 + name: Human Proteome Map Protein + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: hpm.protein + resources: + - deprecated: false + deprecationDate: + description: Human Proteome Map Protein at Institute of Bioinformatics (Bangalore) + id: 1482 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1087 + location: + countryCode: IN + countryName: India + name: Institute of Bioinformatics, International Tech Park, Bangalore + rorId: + location: + countryCode: IN + countryName: India + mirId: MIR:00100682 + name: Human Proteome Map Protein at Institute of Bioinformatics (Bangalore) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.humanproteomemap.org/index.php + sampleId: '1968' + urlPattern: http://www.humanproteomemap.org/protein.php?hpm_id={$id} + sampleId: '1968' + - created: 2019-06-11T14:17:41.032+0000 + deprecated: false + deprecationDate: + description: The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra. + id: 1483 + mirId: MIR:00000527 + modified: 2019-06-11T14:17:41.032+0000 + name: Human Proteome Map Peptide + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: hpm.peptide + resources: + - deprecated: false + deprecationDate: + description: Human Proteome Map Peptide at Institute of Bioinformatics (Bangalore) + id: 1484 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1087 + location: + countryCode: IN + countryName: India + name: Institute of Bioinformatics, International Tech Park, Bangalore + rorId: + location: + countryCode: IN + countryName: India + mirId: MIR:00100683 + name: Human Proteome Map Peptide at Institute of Bioinformatics (Bangalore) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.humanproteomemap.org/index.php + sampleId: '9606117' + urlPattern: http://www.humanproteomemap.org/spectrum.php?pep_id={$id} + sampleId: '9606117' + - created: 2019-06-11T14:17:41.273+0000 + deprecated: false + deprecationDate: + description: The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database. + id: 1485 + mirId: MIR:00000528 + modified: 2019-06-11T14:17:41.273+0000 + name: DrugBank Target v4 + namespaceEmbeddedInLui: false + pattern: ^BE\d{7}$ + prefix: drugbankv4.target + resources: + - deprecated: false + deprecationDate: + description: DrugBank Target information version 4 + id: 1487 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1486 + location: + countryCode: CA + countryName: Canada + name: Departments of Computing Science, Biological Sciences, University of Alberta + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100687 + name: DrugBank Target information version 4 + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.drugbank.ca/targets + sampleId: BE0000048 + urlPattern: http://www.drugbank.ca/biodb/bio_entities/{$id} + sampleId: BE0000048 + - created: 2019-06-11T14:17:41.559+0000 + deprecated: false + deprecationDate: + description: ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number. + id: 1488 + mirId: MIR:00000529 + modified: 2019-06-11T14:17:41.559+0000 + name: ZINC + namespaceEmbeddedInLui: false + pattern: ^(ZINC)?\d+$ + prefix: zinc + resources: + - deprecated: false + deprecationDate: + description: ZINC at University of California (San Francisco) + id: 1490 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1489 + location: + countryCode: US + countryName: United States + name: Shoichet Laboratory, Department of Pharmaceutical Chemistry, University of California, San Francisco + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100688 + name: ZINC at University of California (San Francisco) + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://zinc15.docking.org/ + sampleId: ZINC1084 + urlPattern: http://zinc15.docking.org/substances/{$id} + sampleId: ZINC1084 + - created: 2019-06-11T14:17:41.796+0000 + deprecated: false + deprecationDate: + description: FooDB is resource on food and its constituent compounds. It includes data on the compoundā€™s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds. + id: 1491 + mirId: MIR:00000530 + modified: 2019-06-11T14:17:41.796+0000 + name: FooDB Compound + namespaceEmbeddedInLui: false + pattern: ^FDB\d+$ + prefix: foodb.compound + resources: + - deprecated: false + deprecationDate: + description: FooDB database of food additives at University of Alberta + id: 1492 + institution: + description: The University of Alberta in Edmonton is one of Canada's top teaching and research universities, with an international reputation for excellence across the humanities, sciences, creative arts, business, engineering and health sciences. + homeUrl: https://www.ualberta.ca + id: 334 + location: + countryCode: CA + countryName: Canada + name: University of Alberta + rorId: https://ror.org/0160cpw27 + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100689 + name: FooDB database of food additives at University of Alberta + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://foodb.ca/foods + sampleId: FDB002100 + urlPattern: http://foodb.ca/compounds/{$id} + sampleId: FDB002100 + - created: 2019-06-11T14:17:41.988+0000 + deprecated: false + deprecationDate: + description: The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substanceā€™s molecular structure and/or descriptive information. + id: 1493 + mirId: MIR:00000531 + modified: 2019-06-11T14:17:41.988+0000 + name: UNII + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9]+$ + prefix: unii + resources: + - deprecated: false + deprecationDate: + description: UNII at U.S. Food and Drug Administration + id: 1494 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1238 + location: + countryCode: US + countryName: United States + name: U.S. Food and Drug Administration, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100690 + name: UNII at U.S. Food and Drug Administration + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://fdasis.nlm.nih.gov/srs/ + sampleId: 3G6A5W338E + urlPattern: http://fdasis.nlm.nih.gov/srs/srsdirect.jsp?regno={$id} + sampleId: 3G6A5W338E + - created: 2019-06-11T14:17:42.194+0000 + deprecated: false + deprecationDate: + description: "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\r\nIt integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10)." + id: 1495 + mirId: MIR:00000532 + modified: 2019-06-11T14:17:42.194+0000 + name: Orphanet Rare Disease Ontology + namespaceEmbeddedInLui: false + pattern: ^Orphanet(_|:)C?\d+$ + prefix: orphanet.ordo + resources: + - deprecated: false + deprecationDate: + description: ORDO via OLS + id: 1496 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100705 + name: ORDO via OLS + official: true + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/ordo + sampleId: Orphanet_C023 + urlPattern: https://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form={$id} + sampleId: Orphanet_C023 + - created: 2019-06-11T14:17:42.461+0000 + deprecated: false + deprecationDate: + description: Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms. + id: 1497 + mirId: MIR:00000533 + modified: 2019-06-11T14:17:42.461+0000 + name: Protein Affinity Reagents + namespaceEmbeddedInLui: false + pattern: ^PAR:\d+$ + prefix: psipar + resources: + - deprecated: false + deprecationDate: + description: Protein Affinity Reagents through OLS + id: 1498 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100709 + name: Protein Affinity Reagents through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=PAR + sampleId: PAR:0116 + urlPattern: https://www.ebi.ac.uk/ontology-lookup/?termId={$id} + sampleId: PAR:0116 + - created: 2019-06-11T14:17:42.685+0000 + deprecated: false + deprecationDate: + description: ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession. + id: 1499 + mirId: MIR:00000534 + modified: 2019-06-11T14:17:42.685+0000 + name: ClinVar Record + namespaceEmbeddedInLui: false + pattern: ^RCV\d+(\.\d+)?$ + prefix: clinvar.record + resources: + - deprecated: false + deprecationDate: + description: ClinVar Record at NCBI + id: 1501 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100710 + name: ClinVar Record at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: http://www.ncbi.nlm.nih.gov/clinvar/ + sampleId: RCV000033555.3 + urlPattern: http://www.ncbi.nlm.nih.gov/clinvar/{$id}/ + sampleId: RCV000033555.3 + - created: 2019-06-11T14:17:42.938+0000 + deprecated: false + deprecationDate: + description: MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis. + id: 1502 + mirId: MIR:00000535 + modified: 2019-06-11T14:17:42.938+0000 + name: MGnify Project + namespaceEmbeddedInLui: false + pattern: ^[A-Z]+[0-9]+$ + prefix: mgnify.proj + resources: + - deprecated: false + deprecationDate: + description: MGnify Project + id: 1503 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100711 + name: MGnify Project + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/metagenomics + sampleId: ERP004492 + urlPattern: https://www.ebi.ac.uk/metagenomics/projects/{$id} + sampleId: ERP004492 + - created: 2019-06-11T14:17:43.129+0000 + deprecated: false + deprecationDate: + description: "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\r\nIt also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population." + id: 1504 + mirId: MIR:00000536 + modified: 2019-06-11T14:17:43.129+0000 + name: EU Clinical Trials + namespaceEmbeddedInLui: false + pattern: ^\d{4}\-\d{6}\-\d{2}$ + prefix: euclinicaltrials + resources: + - deprecated: false + deprecationDate: + description: EU Clinical Trials at European Medicines Agency + id: 1506 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1505 + location: + countryCode: GB + countryName: United Kingdom + name: European Medicines Agency, London + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100712 + name: EU Clinical Trials at European Medicines Agency + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.clinicaltrialsregister.eu/ + sampleId: 2008-005144-16 + urlPattern: https://www.clinicaltrialsregister.eu/ctr-search/search?query={$id} + sampleId: 2008-005144-16 + - created: 2019-06-11T14:17:43.371+0000 + deprecated: false + deprecationDate: + description: Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date. + id: 1507 + mirId: MIR:00000537 + modified: 2019-06-11T14:17:43.371+0000 + name: Google Patents + namespaceEmbeddedInLui: false + pattern: ^[A-Z]{2}\d+([A-Z])?$ + prefix: google.patent + resources: + - deprecated: false + deprecationDate: + description: Google Patents at Google + id: 1509 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1508 + location: + countryCode: GB + countryName: United Kingdom + name: Google Incorporated + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100714 + name: Google Patents at Google + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.google.com/patents/ + sampleId: US4145692 + urlPattern: https://www.google.com/patents/{$id} + sampleId: US4145692 + - created: 2019-06-11T14:17:43.583+0000 + deprecated: false + deprecationDate: + description: The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement. + id: 1510 + mirId: MIR:00000538 + modified: 2019-06-11T14:17:43.583+0000 + name: USPTO + namespaceEmbeddedInLui: false + pattern: ^(D|PP|R|T|H|X|AI)?\d+$ + prefix: uspto + resources: + - deprecated: false + deprecationDate: + description: USPTO patents at USPTO + id: 1512 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1511 + location: + countryCode: US + countryName: United States + name: United States Patent and Trademark Office + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100715 + name: USPTO patents at USPTO + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://patft.uspto.gov/netahtml/PTO/index.html + sampleId: '4145692' + urlPattern: http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/{$id} + sampleId: '4145692' + - created: 2019-06-11T14:17:43.853+0000 + deprecated: false + deprecationDate: + description: The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013. + id: 1513 + mirId: MIR:00000539 + modified: 2019-06-11T14:17:43.853+0000 + name: Cooperative Patent Classification + namespaceEmbeddedInLui: false + pattern: ^([A-H,Y]|[A-H, Y]\d{2}|[A-H, Y]\d{2}[A-Z]|[A-H, Y]\d{2}[A-Z]\d{1,3}|[A-H, Y]\d{2}[A-Z]\d{1,3}(\/)?\d{2,})$ + prefix: cpc + resources: + - deprecated: false + deprecationDate: + description: Cooperative Patent Classification at Espace + id: 1515 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1514 + location: + countryCode: US + countryName: United States + name: Espace, European Patent Office + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100716 + name: Cooperative Patent Classification at Espace + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://worldwide.espacenet.com/classification + sampleId: A01M1/026 + urlPattern: https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC={$id} + sampleId: A01M1/026 + - created: 2019-06-11T14:17:44.062+0000 + deprecated: false + deprecationDate: + description: GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study. + id: 1516 + mirId: MIR:00000540 + modified: 2019-06-11T14:17:44.062+0000 + name: GWAS Central Study + namespaceEmbeddedInLui: false + pattern: ^HGVST\d+$ + prefix: gwascentral.study + resources: + - deprecated: false + deprecationDate: + description: GWAS Central Study at University of Leicester + id: 1517 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1079 + location: + countryCode: GB + countryName: United Kingdom + name: Department of Genetics, University of Leicester, Leicester + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100717 + name: GWAS Central Study at University of Leicester + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.gwascentral.org/studies + sampleId: HGVST1828 + urlPattern: https://www.gwascentral.org/study/{$id} + sampleId: HGVST1828 + - created: 2019-06-11T14:17:44.275+0000 + deprecated: false + deprecationDate: + description: The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information. + id: 1518 + mirId: MIR:00000541 + modified: 2019-06-11T14:17:44.275+0000 + name: ExAC Variant + namespaceEmbeddedInLui: false + pattern: ^\d{1,2}\-\d+\-[GATC]\-[GATC]$ + prefix: exac.variant + resources: + - deprecated: false + deprecationDate: + description: ExAC Variant at Exome Aggregation Consortium + id: 1520 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1519 + location: + countryCode: US + countryName: United States + name: Exome Aggregation Consortium (ExAC), Cambridge, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100718 + name: ExAC Variant at Exome Aggregation Consortium + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://exac.broadinstitute.org/ + sampleId: 22-46615880-T-C + urlPattern: http://exac.broadinstitute.org/variant/{$id} + sampleId: 22-46615880-T-C + - created: 2019-06-11T14:17:44.511+0000 + deprecated: false + deprecationDate: + description: GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker. + id: 1521 + mirId: MIR:00000542 + modified: 2019-06-11T14:17:44.511+0000 + name: GWAS Central Marker + namespaceEmbeddedInLui: false + pattern: ^HGVM\d+$ + prefix: gwascentral.marker + resources: + - deprecated: false + deprecationDate: + description: GWAS Central Marker at University of Leicester + id: 1522 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1079 + location: + countryCode: GB + countryName: United Kingdom + name: Department of Genetics, University of Leicester, Leicester + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100719 + name: GWAS Central Marker at University of Leicester + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.gwascentral.org/markers/ + sampleId: HGVM15354 + urlPattern: https://www.gwascentral.org/marker/{$id} + sampleId: HGVM15354 + - created: 2019-06-11T14:17:47.850+0000 + deprecated: false + deprecationDate: + description: BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolotes. + id: 1555 + mirId: MIR:00000556 + modified: 2019-06-11T14:17:47.850+0000 + name: BiGG Metabolite + namespaceEmbeddedInLui: false + pattern: ^[a-z_A-Z0-9]+$ + prefix: bigg.metabolite + resources: + - deprecated: false + deprecationDate: + description: BiGG Metabolite at University of Cakifornia + id: 1556 + institution: + description: >- + is a public research university in San Diego, California. + + Established in 1960 near the pre-existing Scripps Institution of Oceanography, UC San Diego is the seventh-oldest of the 10 University of California campuses and offers over 200 undergraduate and graduate degree programs, enrolling approximately 30,000 undergraduate and 8,500 graduate students. + homeUrl: https://ucsd.edu/ + id: 190 + location: + countryCode: US + countryName: United States + name: University of California, San Diego + rorId: https://ror.org/0168r3w48 + location: + countryCode: US + countryName: United States + mirId: MIR:00100733 + name: BiGG Metabolite at University of Cakifornia + official: false + providerCode: ucsd + resourceHomeUrl: http://bigg.ucsd.edu/universal/metabolites + sampleId: 12dgr161 + urlPattern: http://bigg.ucsd.edu/models/universal/metabolites/{$id} + sampleId: 12dgr161 + - created: 2019-06-11T14:17:44.903+0000 + deprecated: false + deprecationDate: + description: 'The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease.' + id: 1525 + mirId: MIR:00000544 + modified: 2019-06-11T14:17:44.903+0000 + name: LINCS Cell + namespaceEmbeddedInLui: false + pattern: (^LCL-\d+$)|(^LDC-\d+$)|(^ES-\d+$)|(^LSC-\d+$)|(^LPC-\d+$) + prefix: lincs.cell + resources: + - deprecated: false + deprecationDate: + description: LINCS Portal + id: 1527 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1526 + location: + countryCode: US + countryName: United States + name: University of Miami, BD2K-LINCS DCIC + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100721 + name: LINCS Portal + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://lincsportal.ccs.miami.edu/cells/ + sampleId: LCL-2085 + urlPattern: http://lincsportal.ccs.miami.edu/cells/#/view/{$id} + sampleId: LCL-2085 + - created: 2019-06-11T14:17:45.145+0000 + deprecated: false + deprecationDate: + description: The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins. + id: 1528 + mirId: MIR:00000545 + modified: 2019-06-11T14:17:45.145+0000 + name: LINCS Protein + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: lincs.protein + resources: + - deprecated: false + deprecationDate: + description: LINCS Protein at Harvard Medical School + id: 1529 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1322 + location: + countryCode: US + countryName: United States + name: Harvard Medical School, Boston, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100722 + name: LINCS Protein at Harvard Medical School + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://lincs.hms.harvard.edu/db/proteins/ + sampleId: '200282' + urlPattern: http://lincs.hms.harvard.edu/db/proteins/{$id}/ + sampleId: '200282' + - created: 2019-06-11T14:17:45.396+0000 + deprecated: false + deprecationDate: + description: The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC). + id: 1530 + mirId: MIR:00000546 + modified: 2019-06-11T14:17:45.396+0000 + name: LINCS Small Molecule + namespaceEmbeddedInLui: false + pattern: ^LSM-\d+$ + prefix: lincs.smallmolecule + resources: + - deprecated: false + deprecationDate: + description: LINCS Portal + id: 1532 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1531 + location: + countryCode: US + countryName: United States + name: University of Miami, BD2K-LINCS DCIC, USA + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100723 + name: LINCS Portal + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://lincsportal.ccs.miami.edu/SmallMolecules/ + sampleId: LSM-6306 + urlPattern: http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/{$id} + sampleId: LSM-6306 + - created: 2019-06-11T14:17:45.691+0000 + deprecated: false + deprecationDate: + description: The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information. + id: 1533 + mirId: MIR:00000547 + modified: 2019-06-11T14:17:45.691+0000 + name: ExAC Transcript + namespaceEmbeddedInLui: false + pattern: ^ENST\d{11}$ + prefix: exac.transcript + resources: + - deprecated: false + deprecationDate: + description: ExAC Transcript at Exome Aggregation Consortium + id: 1534 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1519 + location: + countryCode: US + countryName: United States + name: Exome Aggregation Consortium (ExAC), Cambridge, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100724 + name: ExAC Transcript at Exome Aggregation Consortium + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://exac.broadinstitute.org/ + sampleId: ENST00000407236 + urlPattern: http://exac.broadinstitute.org/transcript/{$id} + sampleId: ENST00000407236 + - created: 2019-06-11T14:17:45.890+0000 + deprecated: false + deprecationDate: + description: The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information. + id: 1535 + mirId: MIR:00000548 + modified: 2019-06-11T14:17:45.890+0000 + name: ExAC Gene + namespaceEmbeddedInLui: false + pattern: ^ENSG\d{11}$ + prefix: exac.gene + resources: + - deprecated: false + deprecationDate: + description: ExAC Gene at Exome Aggregation Consortium + id: 1536 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1519 + location: + countryCode: US + countryName: United States + name: Exome Aggregation Consortium (ExAC), Cambridge, Massachusetts + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100725 + name: ExAC Gene at Exome Aggregation Consortium + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://exac.broadinstitute.org/ + sampleId: ENSG00000169174 + urlPattern: http://exac.broadinstitute.org/gene/{$id} + sampleId: ENSG00000169174 + - created: 2019-06-11T14:17:46.612+0000 + deprecated: false + deprecationDate: + description: UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds. + id: 1542 + mirId: MIR:00000551 + modified: 2019-06-11T14:17:46.612+0000 + name: UniPathway Compound + namespaceEmbeddedInLui: false + pattern: ^UPC\d{5}$ + prefix: unipathway.compound + resources: + - deprecated: true + deprecationDate: 2019-10-01T12:10:54.792+0000 + description: UniPathway Compound at Swiss Institute of Bioinformatics (SIB) + id: 1544 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100728 + name: UniPathway Compound at Swiss Institute of Bioinformatics (SIB) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.grenoble.prabi.fr/obiwarehouse/unipathway + sampleId: UPC04349 + urlPattern: http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid={$id} + sampleId: UPC04349 + - created: 2019-06-11T14:17:46.875+0000 + deprecated: false + deprecationDate: + description: This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems. + id: 1545 + mirId: MIR:00000552 + modified: 2019-06-11T14:17:46.875+0000 + name: SEED Subsystem + namespaceEmbeddedInLui: false + pattern: ^\w+$ + prefix: seed + resources: + - deprecated: true + deprecationDate: 2019-10-08T08:49:23.021+0000 + description: SEED Subsystem at Argonne National Laboratory + id: 1547 + institution: + description: Argonne is a multidisciplinary science and engineering research center, where talented scientists and engineers work together to answer the biggest questions facing humanity, from how to obtain affordable clean energy to protecting ourselves and our environment. + homeUrl: https://www.anl.gov + id: 1546 + location: + countryCode: US + countryName: United States + name: Argonne National Laboratory + rorId: https://ror.org/05gvnxz63 + location: + countryCode: US + countryName: United States + mirId: MIR:00100729 + name: SEED Subsystem at Argonne National Laboratory + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://seed-viewer.theseed.org/seedviewer.cgi + sampleId: Biotin_biosynthesis + urlPattern: https://registry.identifiers.org/deprecation/resources/MIR:00100729/{$id} + sampleId: Biotin_biosynthesis + - created: 2019-06-11T14:17:47.133+0000 + deprecated: false + deprecationDate: + description: This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems. + id: 1548 + mirId: MIR:00000553 + modified: 2019-06-11T14:17:47.133+0000 + name: SEED Compound + namespaceEmbeddedInLui: false + pattern: ^cpd\d+$ + prefix: seed.compound + resources: + - deprecated: false + deprecationDate: + description: SEED Compound at Argonne National Laboratory + id: 1549 + institution: + description: Argonne is a multidisciplinary science and engineering research center, where talented scientists and engineers work together to answer the biggest questions facing humanity, from how to obtain affordable clean energy to protecting ourselves and our environment. + homeUrl: https://www.anl.gov + id: 1546 + location: + countryCode: US + countryName: United States + name: Argonne National Laboratory + rorId: https://ror.org/05gvnxz63 + location: + countryCode: US + countryName: United States + mirId: MIR:00100730 + name: SEED Compound at Argonne National Laboratory + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://modelseed.org/ + sampleId: cpd15380 + urlPattern: http://modelseed.org/biochem/compounds/{$id} + sampleId: cpd15380 + - created: 2019-06-11T14:17:47.362+0000 + deprecated: false + deprecationDate: + description: BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models. + id: 1550 + mirId: MIR:00000554 + modified: 2019-06-11T14:17:47.362+0000 + name: BiGG Model + namespaceEmbeddedInLui: false + pattern: ^[a-z_A-Z0-9]+$ + prefix: bigg.model + resources: + - deprecated: false + deprecationDate: + description: BiGG Model at University of California + id: 1552 + institution: + description: >- + is a public research university in San Diego, California. + + Established in 1960 near the pre-existing Scripps Institution of Oceanography, UC San Diego is the seventh-oldest of the 10 University of California campuses and offers over 200 undergraduate and graduate degree programs, enrolling approximately 30,000 undergraduate and 8,500 graduate students. + homeUrl: https://ucsd.edu/ + id: 190 + location: + countryCode: US + countryName: United States + name: University of California, San Diego + rorId: https://ror.org/0168r3w48 + location: + countryCode: US + countryName: United States + mirId: MIR:00100731 + name: BiGG Model at University of California + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bigg.ucsd.edu/models + sampleId: iECABU_c1320 + urlPattern: http://bigg.ucsd.edu/models/{$id} + sampleId: iECABU_c1320 + - created: 2019-06-11T14:17:47.621+0000 + deprecated: false + deprecationDate: + description: BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments. + id: 1553 + mirId: MIR:00000555 + modified: 2019-06-11T14:17:47.621+0000 + name: BiGG Compartment + namespaceEmbeddedInLui: false + pattern: ^[a-z_A-Z]+$ + prefix: bigg.compartment + resources: + - deprecated: false + deprecationDate: + description: BiGG Compartment at University of California + id: 1554 + institution: + description: >- + is a public research university in San Diego, California. + + Established in 1960 near the pre-existing Scripps Institution of Oceanography, UC San Diego is the seventh-oldest of the 10 University of California campuses and offers over 200 undergraduate and graduate degree programs, enrolling approximately 30,000 undergraduate and 8,500 graduate students. + homeUrl: https://ucsd.edu/ + id: 190 + location: + countryCode: US + countryName: United States + name: University of California, San Diego + rorId: https://ror.org/0168r3w48 + location: + countryCode: US + countryName: United States + mirId: MIR:00100732 + name: BiGG Compartment at University of California + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bigg.ucsd.edu/compartments/ + sampleId: c + urlPattern: http://bigg.ucsd.edu/compartments/{$id} + sampleId: c + - created: 2019-06-11T14:17:46.087+0000 + deprecated: false + deprecationDate: + description: Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic. + id: 1537 + mirId: MIR:00000549 + modified: 2020-11-30T14:15:44.647+0000 + name: Wikidata + namespaceEmbeddedInLui: false + pattern: ^(Q|P)\d+$ + prefix: wikidata + resources: + - deprecated: false + deprecationDate: + description: Wikidata at Wikimedia Foundation + id: 1538 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1111 + location: + countryCode: US + countryName: United States + name: Wikimedia Foundation, San Francisco, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100726 + name: Wikidata at Wikimedia Foundation + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.wikidata.org/ + sampleId: Q2207226 + urlPattern: http://www.wikidata.org/entity/{$id} + sampleId: Q2207226 + - created: 2019-06-11T14:17:48.059+0000 + deprecated: false + deprecationDate: + description: BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions. + id: 1557 + mirId: MIR:00000557 + modified: 2019-06-11T14:17:48.059+0000 + name: BiGG Reaction + namespaceEmbeddedInLui: false + pattern: ^[a-z_A-Z0-9]+$ + prefix: bigg.reaction + resources: + - deprecated: false + deprecationDate: + description: BiGG Reaction at University of California + id: 1558 + institution: + description: >- + is a public research university in San Diego, California. + + Established in 1960 near the pre-existing Scripps Institution of Oceanography, UC San Diego is the seventh-oldest of the 10 University of California campuses and offers over 200 undergraduate and graduate degree programs, enrolling approximately 30,000 undergraduate and 8,500 graduate students. + homeUrl: https://ucsd.edu/ + id: 190 + location: + countryCode: US + countryName: United States + name: University of California, San Diego + rorId: https://ror.org/0168r3w48 + location: + countryCode: US + countryName: United States + mirId: MIR:00100734 + name: BiGG Reaction at University of California + official: false + providerCode: ucsd + resourceHomeUrl: http://bigg.ucsd.edu/universal/reactions + sampleId: 13GS + urlPattern: http://bigg.ucsd.edu/models/universal/reactions/{$id} + sampleId: 13GS + - created: 2019-06-11T14:17:48.502+0000 + deprecated: false + deprecationDate: + description: The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank. + id: 1561 + mirId: MIR:00000559 + modified: 2019-06-11T14:17:48.502+0000 + name: UMLS + namespaceEmbeddedInLui: false + pattern: ^C\d+$ + prefix: umls + resources: + - deprecated: false + deprecationDate: + description: Unified Medical Language System at LinkedLifeData + id: 1562 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 63 + location: + countryCode: BG + countryName: Bulgaria + name: Linkedlifedata, Ontotext, Sofia + rorId: + location: + countryCode: BG + countryName: Bulgaria + mirId: MIR:00100736 + name: Unified Medical Language System at LinkedLifeData + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://linkedlifedata.com/ + sampleId: C0021390 + urlPattern: http://linkedlifedata.com/resource/umls/id/{$id} + sampleId: C0021390 + - created: 2019-06-11T14:17:48.947+0000 + deprecated: false + deprecationDate: + description: The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community. + id: 1565 + mirId: MIR:00000561 + modified: 2019-06-11T14:17:48.947+0000 + name: Electron Microscopy Data Bank + namespaceEmbeddedInLui: false + pattern: ^EMD-\d{4}$ + prefix: emdb + resources: + - deprecated: false + deprecationDate: + description: EMDB at Protein Data Bank in Europe + id: 1566 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100738 + name: EMDB at Protein Data Bank in Europe + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/pdbe/emdb/ + sampleId: EMD-1001 + urlPattern: https://www.ebi.ac.uk/pdbe/entry/emdb/{$id} + sampleId: EMD-1001 + - created: 2019-06-11T14:17:49.171+0000 + deprecated: false + deprecationDate: + description: miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments. + id: 1567 + mirId: MIR:00000562 + modified: 2019-06-11T14:17:49.171+0000 + name: miRTarBase + namespaceEmbeddedInLui: false + pattern: ^MIRT\d{6}$ + prefix: mirtarbase + resources: + - deprecated: false + deprecationDate: + description: miRTarBase at National Chiao Tung University + id: 1569 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1568 + location: + countryCode: TW + countryName: Taiwan, Province of China + name: Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu + rorId: + location: + countryCode: TW + countryName: Taiwan, Province of China + mirId: MIR:00100739 + name: miRTarBase at National Chiao Tung University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://mirtarbase.mbc.nctu.edu.tw/ + sampleId: MIRT000002 + urlPattern: http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid={$id} + sampleId: MIRT000002 + - created: 2019-06-11T14:17:49.428+0000 + deprecated: false + deprecationDate: + description: The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT). + id: 1570 + mirId: MIR:00000563 + modified: 2019-06-11T14:17:49.428+0000 + name: MedDRA + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: meddra + resources: + - deprecated: false + deprecationDate: + description: MedDRA through BioPortal + id: 1571 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100740 + name: MedDRA through BioPortal + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/MEDDRA + sampleId: '10015919' + urlPattern: http://purl.bioontology.org/ontology/MEDDRA/{$id} + sampleId: '10015919' + - created: 2019-06-11T14:17:49.634+0000 + deprecated: false + deprecationDate: + description: DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records. + id: 1572 + mirId: MIR:00000564 + modified: 2019-06-11T14:17:49.634+0000 + name: DASHR + namespaceEmbeddedInLui: false + pattern: ^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$ + prefix: dashr + resources: + - deprecated: false + deprecationDate: + description: DASHR at University of Pennsylvania + id: 1574 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1573 + location: + countryCode: US + countryName: United States + name: Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100741 + name: DASHR at University of Pennsylvania + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://lisanwanglab.org/DASHR/ + sampleId: hsa-mir-200a + urlPattern: http://lisanwanglab.org/DASHR/entry/{$id} + sampleId: hsa-mir-200a + - created: 2019-06-11T14:17:49.866+0000 + deprecated: false + deprecationDate: + description: DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression. + id: 1575 + mirId: MIR:00000565 + modified: 2019-06-11T14:17:49.866+0000 + name: DASHR expression + namespaceEmbeddedInLui: false + pattern: ^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$ + prefix: dashr.expression + resources: + - deprecated: false + deprecationDate: + description: DASHR expression at University of Pennsylvania + id: 1576 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1573 + location: + countryCode: US + countryName: United States + name: Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100742 + name: DASHR expression at University of Pennsylvania + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://dashr1.lisanwanglab.org/show-expression-table.php?start=0 + sampleId: hsa-mir-200a + urlPattern: https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#{$id}#exprPerTissueTable + sampleId: hsa-mir-200a + - created: 2019-06-11T14:17:50.083+0000 + deprecated: false + deprecationDate: + description: The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance. + id: 1577 + mirId: MIR:00000566 + modified: 2019-06-11T14:17:50.083+0000 + name: SPLASH + namespaceEmbeddedInLui: false + pattern: ^splash\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$ + prefix: splash + resources: + - deprecated: false + deprecationDate: + description: Mass Bank of North America (MoNA) + id: 1579 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1578 + location: + countryCode: US + countryName: United States + name: University of Californai, Davis, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100746 + name: Mass Bank of North America (MoNA) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://mona.fiehnlab.ucdavis.edu/ + sampleId: splash10-0zq2000000-77302b0326a418630a84 + urlPattern: http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/{$id} + sampleId: splash10-0zq2000000-77302b0326a418630a84 + - created: 2019-06-11T14:17:48.752+0000 + deprecated: false + deprecationDate: + description: MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc. + id: 1563 + mirId: MIR:00000560 + modified: 2020-04-21T17:40:51.334+0000 + name: MeSH + namespaceEmbeddedInLui: false + pattern: ^(C|D)\d{6,9}$ + prefix: mesh + resources: + - deprecated: false + deprecationDate: + description: MeSH Linked Data at National Library of Medicine + id: 1564 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 792 + location: + countryCode: US + countryName: United States + name: U.S. National Library of Medicine, National Institute of Health, Maryland + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100737 + name: MeSH Linked Data at National Library of Medicine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://id.nlm.nih.gov/mesh/ + sampleId: C000100 + urlPattern: http://id.nlm.nih.gov/mesh/{$id} + sampleId: C000100 + - created: 2019-06-11T14:17:50.332+0000 + deprecated: false + deprecationDate: + description: MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components. + id: 1580 + mirId: MIR:00000567 + modified: 2021-02-26T09:36:59.253+0000 + name: MetaNetX chemical + namespaceEmbeddedInLui: false + pattern: ^(MNXM\d+|BIOMASS|WATER)$ + prefix: metanetx.chemical + resources: + - deprecated: false + deprecationDate: + description: MetaNetX chemical at SIB Swiss Institute of Bioinformatics + id: 1582 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1581 + location: + countryCode: CH + countryName: Switzerland + name: Vital-IT group, SIB Swiss Institute of Bioinformatics, Lausanne + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100748 + name: MetaNetX chemical at SIB Swiss Institute of Bioinformatics + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.metanetx.org/ + sampleId: MNXM1723 + urlPattern: https://www.metanetx.org/chem_info/{$id} + sampleId: MNXM1723 + - created: 2019-06-11T14:17:50.605+0000 + deprecated: false + deprecationDate: + description: MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions. + id: 1583 + mirId: MIR:00000568 + modified: 2021-02-26T09:43:13.847+0000 + name: MetaNetX reaction + namespaceEmbeddedInLui: false + pattern: ^(MNXR\d+|EMPTY)$ + prefix: metanetx.reaction + resources: + - deprecated: false + deprecationDate: + description: MetaNetX reaction at SIB Swiss Institute of Bioinformatics + id: 1584 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1581 + location: + countryCode: CH + countryName: Switzerland + name: Vital-IT group, SIB Swiss Institute of Bioinformatics, Lausanne + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100749 + name: MetaNetX reaction at SIB Swiss Institute of Bioinformatics + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.metanetx.org/ + sampleId: MNXR101574 + urlPattern: https://www.metanetx.org/equa_info/{$id} + sampleId: MNXR101574 + - created: 2019-06-11T14:17:51.017+0000 + deprecated: false + deprecationDate: + description: UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions. + id: 1587 + mirId: MIR:00000570 + modified: 2019-06-11T14:17:51.017+0000 + name: UniPathway Reaction + namespaceEmbeddedInLui: false + pattern: ^UCR\d{5}$ + prefix: unipathway.reaction + resources: + - deprecated: true + deprecationDate: 2019-10-01T12:11:20.049+0000 + description: UniPathway Reaction at Swiss Institute of Bioinformatics (SIB) + id: 1588 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100752 + name: UniPathway Reaction at Swiss Institute of Bioinformatics (SIB) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.grenoble.prabi.fr/obiwarehouse/unipathway + sampleId: UCR00226 + urlPattern: http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid={$id} + sampleId: UCR00226 + - created: 2019-06-11T14:17:51.237+0000 + deprecated: false + deprecationDate: + description: The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM. + id: 1589 + mirId: MIR:00000571 + modified: 2019-06-11T14:17:51.237+0000 + name: Human Phenotype Ontology + namespaceEmbeddedInLui: true + pattern: ^HP:\d{7}$ + prefix: hp + resources: + - deprecated: false + deprecationDate: + description: Human Phenotype Ontology through OLS + id: 1592 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100754 + name: Human Phenotype Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/hp + sampleId: '0000118' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/hp/terms?obo_id=HP:{$id} + - deprecated: false + deprecationDate: + description: Human Phenotype Ontology at Institute for Medical Genetics and Human Genetics + id: 1591 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1590 + location: + countryCode: DE + countryName: Germany + name: Institute for Medical Genetics and Human Genetics, CharitĆ©-UniversitƤtsmedizin, Berlin + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100753 + name: Human Phenotype Ontology at Institute for Medical Genetics and Human Genetics + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://human-phenotype-ontology.github.io/ + sampleId: '0000118' + urlPattern: https://hpo.jax.org/app/browse/term/HP:{$id} + sampleId: '0000118' + - created: 2019-06-11T14:17:51.650+0000 + deprecated: false + deprecationDate: + description: Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data. + id: 1593 + mirId: MIR:00000572 + modified: 2019-06-11T14:17:51.650+0000 + name: SASBDB + namespaceEmbeddedInLui: false + pattern: ^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$ + prefix: sasbdb + resources: + - deprecated: false + deprecationDate: + description: SASBDB at European Molecular Biology Laboratory + id: 1595 + institution: + description: >- + EMBL is an intergovernmental organisation specialising in basic + research in the life sciences, funded by public research monies + from more than 20 member states, including much of Europe and + Israel, and two associate members, Argentina and Australia. EMBL + is led by the Director General, currently Professor Edith Heard, + appointed by the governing body, EMBL Council. The Council is + comprised of representatives of all member and associate member + states. + + Activities at EMBL Hamburg focus on state-of-the-art structural biology methods using synchrotron radiation. The unit is situated on campus of the German Synchrotron Research Centre (DESY), which hosts leading facilities for synchrotron radiation (PETRA-III) and free electron lasers (FLASH and XFEL, under construction). + homeUrl: https://www.embl-hamburg.de + id: 1594 + location: + countryCode: DE + countryName: Germany + name: European Molecular Biology Lab Hamburg Outstation + rorId: https://ror.org/050589e39 + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100763 + name: SASBDB at European Molecular Biology Laboratory + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.sasbdb.org/ + sampleId: SASDAX8 + urlPattern: http://www.sasbdb.org/data/{$id} + sampleId: SASDAX8 + - created: 2019-06-11T14:17:51.916+0000 + deprecated: false + deprecationDate: + description: The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families. + id: 1596 + mirId: MIR:00000573 + modified: 2019-06-11T14:17:51.916+0000 + name: HGNC gene family + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: hgnc.genefamily + resources: + - deprecated: false + deprecationDate: + description: HGNC gene family at HUGO Genome Nomenclature Committee + id: 1597 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100765 + name: HGNC gene family at HUGO Genome Nomenclature Committee + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.genenames.org/ + sampleId: '141' + urlPattern: https://www.genenames.org/cgi-bin/genefamilies/set/{$id} + sampleId: '141' + - created: 2019-06-11T14:17:52.138+0000 + deprecated: false + deprecationDate: + description: The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems. + id: 1598 + mirId: MIR:00000574 + modified: 2019-06-11T14:17:52.138+0000 + name: MDM + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: mdm + resources: + - deprecated: false + deprecationDate: + description: MDM at University of Muenster + id: 1600 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1599 + location: + countryCode: DE + countryName: Germany + name: Institute of Medical Informatics, University of Muenster + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00100766 + name: MDM at University of Muenster + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://medical-data-models.org/ + sampleId: '4776' + urlPattern: https://medical-data-models.org/forms/{$id} + sampleId: '4776' + - created: 2019-06-11T14:17:52.483+0000 + deprecated: false + deprecationDate: + description: ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae. It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities. + id: 1601 + mirId: MIR:00000575 + modified: 2019-06-11T14:17:52.483+0000 + name: ProbOnto + namespaceEmbeddedInLui: false + pattern: ^PROB_c\d+$ + prefix: probonto + resources: + - deprecated: false + deprecationDate: + description: ProbOnto through OLS + id: 1602 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100768 + name: ProbOnto through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/probonto + sampleId: PROB_c0000005 + urlPattern: https://www.ebi.ac.uk/ols/ontologies/probonto/terms?short_form={$id} + sampleId: PROB_c0000005 + - created: 2019-06-11T14:17:52.731+0000 + deprecated: false + deprecationDate: + description: APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier. + id: 1603 + mirId: MIR:00000576 + modified: 2019-06-11T14:17:52.731+0000 + name: APID Interactomes + namespaceEmbeddedInLui: false + pattern: ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$ + prefix: apid.interactions + resources: + - deprecated: false + deprecationDate: + description: APID at Salamanca + id: 1605 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1604 + location: + countryCode: ES + countryName: Spain + name: Cancer Research Center (CiC-IBMCC), Consejo Superior de Investigaciones CientĆ­ficas (CSIC) and Universidad de Salamanca (USAL), Salamanca + rorId: + location: + countryCode: ES + countryName: Spain + mirId: MIR:00100769 + name: APID at Salamanca + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://cicblade.dep.usal.es:8080/APID/ + sampleId: P01116 + urlPattern: http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein={$id} + sampleId: P01116 + - created: 2019-06-11T14:17:53.021+0000 + deprecated: false + deprecationDate: + description: STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons. + id: 1606 + mirId: MIR:00000577 + modified: 2019-06-11T14:17:53.021+0000 + name: STOREDB + namespaceEmbeddedInLui: false + pattern: ^STOREDB:(STUDY|FILE|DATASET)\d+$ + prefix: storedb + resources: + - deprecated: false + deprecationDate: + description: STOREDB at University of Cambridge + id: 1608 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1607 + location: + countryCode: GB + countryName: United Kingdom + name: University of Cambridge, Department of Physiology, Downing Street, Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100771 + name: STOREDB at University of Cambridge + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.storedb.org/ + sampleId: STOREDB:STUDY1040 + urlPattern: https://www.storedb.org/?{$id} + sampleId: STOREDB:STUDY1040 + - created: 2019-06-11T14:17:53.298+0000 + deprecated: false + deprecationDate: + description: Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies. + id: 1609 + mirId: MIR:00000578 + modified: 2019-06-11T14:17:53.298+0000 + name: Kyoto Encyclopedia of Genes and Genomes + namespaceEmbeddedInLui: false + pattern: ^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$ + prefix: kegg + resources: + - deprecated: false + deprecationDate: + description: KEGG at Kyoto University Bioinformatics Center + id: 1610 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 15 + location: + countryCode: JP + countryName: Japan + name: Kyoto University Bioinformatics Center + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100773 + name: KEGG at Kyoto University Bioinformatics Center + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.kegg.jp/ + sampleId: hsa00190 + urlPattern: http://www.kegg.jp/entry/{$id} + sampleId: hsa00190 + - created: 2019-06-11T14:17:53.641+0000 + deprecated: false + deprecationDate: + description: The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors. + id: 1611 + mirId: MIR:00000579 + modified: 2019-06-11T14:17:53.641+0000 + name: Plant Transcription Factor Database + namespaceEmbeddedInLui: false + pattern: ^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$ + prefix: planttfdb + resources: + - deprecated: false + deprecationDate: + description: PlantTFDB at Peking University + id: 1613 + institution: + description: >- + Peking University is a comprehensive and national key university. + The campus, known as "Yan Yuan"ļ¼ˆthe garden of Yanļ¼‰, is situated at + Haidian District in the western suburb of Beijing, with a total + area of 2,743,532 square metres (or 274 hectares). It stands near + to the Yuanmingyuan Garden and the Summer Palace. + + Peking University is proud of its outstanding faculty, including 48 members of the Chinese Academy of Sciences (CAS), 9 members of the Chinese Academy of Engineering (CAE), and 21 members of the Third World Academy of Sciences (TWAS). + homeUrl: http://english.pku.edu.cn/ + id: 1612 + location: + countryCode: CN + countryName: China + name: Peking University + rorId: + location: + countryCode: CN + countryName: China + mirId: MIR:00100772 + name: PlantTFDB at Peking University + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://planttfdb.cbi.pku.edu.cn + sampleId: Ath_AT1G01030.1 + urlPattern: http://planttfdb.cbi.pku.edu.cn/tf.php?uid={$id} + sampleId: Ath_AT1G01030.1 + - created: 2019-06-11T14:17:53.926+0000 + deprecated: false + deprecationDate: + description: The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways. + id: 1614 + mirId: MIR:00000580 + modified: 2019-06-11T14:17:53.926+0000 + name: Mammalian Phenotype Ontology + namespaceEmbeddedInLui: true + pattern: ^MP:\d{7}$ + prefix: mp + resources: + - deprecated: false + deprecationDate: + description: Mammalian Phenotype Ontology at The Jackson Lab + id: 1615 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1278 + location: + countryCode: US + countryName: United States + name: The Jackson Laboratory, Bar Harbor, Maine + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100774 + name: Mammalian Phenotype Ontology at The Jackson Lab + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.informatics.jax.org/ + sampleId: '0005452' + urlPattern: http://www.informatics.jax.org/searches/Phat.cgi?id=MP:{$id} + - deprecated: false + deprecationDate: + description: Mammalian Phenotype Ontology through OLS + id: 1616 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100775 + name: Mammalian Phenotype Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/mp/ + sampleId: '0005452' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/mp/terms?obo_id=MP:{$id} + - deprecated: false + deprecationDate: + description: Mammalian Phenotype Ontology through BioPortal + id: 1617 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100776 + name: Mammalian Phenotype Ontology through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: https://bioportal.bioontology.org/ontologies/MP + sampleId: '0005452' + urlPattern: https://bioportal.bioontology.org/ontologies/MP/MP:{$id} + sampleId: '0005452' + - created: 2019-06-11T14:17:54.476+0000 + deprecated: false + deprecationDate: + description: The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts. + id: 1618 + mirId: MIR:00000581 + modified: 2019-06-11T14:17:54.476+0000 + name: World Register of Marine Species + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: worms + resources: + - deprecated: false + deprecationDate: + description: World Register of Marine Species + id: 1620 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1619 + location: + countryCode: BE + countryName: Belgium + name: Flanders Marine Institute, Ostend + rorId: + location: + countryCode: BE + countryName: Belgium + mirId: MIR:00100778 + name: World Register of Marine Species + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.marinespecies.org/ + sampleId: '146421' + urlPattern: http://www.marinespecies.org/aphia.php?p=taxdetails&id={$id} + sampleId: '146421' + - created: 2019-06-11T14:17:54.753+0000 + deprecated: false + deprecationDate: + description: MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections). + id: 1621 + mirId: MIR:00000582 + modified: 2019-06-11T14:17:54.753+0000 + name: MultiCellDS collection + namespaceEmbeddedInLui: false + pattern: ^MCDS_C_[a-zA-Z0-9]{1,10}$ + prefix: multicellds.collection + resources: + - deprecated: false + deprecationDate: + description: MultiCellDScollection at Keck School of Medicine + id: 1623 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1622 + location: + countryCode: US + countryName: United States + name: Center for Applied Molecular Medicine, Keck School of Medicine, University of Southern California, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100779 + name: MultiCellDScollection at Keck School of Medicine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://multicellds.org/MultiCellDB.php + sampleId: MCDS_C_0000000001 + urlPattern: http://multicellds.org/MultiCellDB/{$id} + sampleId: MCDS_C_0000000001 + - created: 2019-06-11T14:17:55.012+0000 + deprecated: false + deprecationDate: + description: MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data. + id: 1624 + mirId: MIR:00000583 + modified: 2019-06-11T14:17:55.012+0000 + name: MultiCellDS Digital snapshot + namespaceEmbeddedInLui: false + pattern: ^MCDS_S_[a-zA-Z0-9]{1,10}$ + prefix: multicellds.snapshot + resources: + - deprecated: false + deprecationDate: + description: MultiCellDS snapshot at Keck School of Medicine + id: 1625 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1622 + location: + countryCode: US + countryName: United States + name: Center for Applied Molecular Medicine, Keck School of Medicine, University of Southern California, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100780 + name: MultiCellDS snapshot at Keck School of Medicine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://multicellds.org/MultiCellDB.php + sampleId: MCDS_S_0000000001 + urlPattern: http://multicellds.org/MultiCellDB/{$id} + sampleId: MCDS_S_0000000001 + - created: 2019-06-11T14:17:55.320+0000 + deprecated: false + deprecationDate: + description: MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata. + id: 1626 + mirId: MIR:00000584 + modified: 2019-06-11T14:17:55.320+0000 + name: MultiCellDS Digital Cell Line + namespaceEmbeddedInLui: false + pattern: ^MCDS_L_[a-zA-Z0-9]{1,10}$ + prefix: multicellds.cell_line + resources: + - deprecated: false + deprecationDate: + description: MultiCellDS Digital Cell Line at Keck School of Medicine + id: 1627 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1622 + location: + countryCode: US + countryName: United States + name: Center for Applied Molecular Medicine, Keck School of Medicine, University of Southern California, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100781 + name: MultiCellDS Digital Cell Line at Keck School of Medicine + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://multicellds.org/MultiCellDB.php + sampleId: MCDS_L_0000000001 + urlPattern: http://multicellds.org/MultiCellDB/{$id} + sampleId: MCDS_L_0000000001 + - created: 2019-06-11T14:17:55.541+0000 + deprecated: false + deprecationDate: + description: E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction ā€” as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities. + id: 1628 + mirId: MIR:00000585 + modified: 2019-06-11T14:17:55.541+0000 + name: E-cyanobacterium entity + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: ecyano.entity + resources: + - deprecated: false + deprecationDate: + description: e-cyanobacterium entity at Masaryk University Brno + id: 1630 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1629 + location: + countryCode: CZ + countryName: Czech Republic + name: Systems Biology Laboratory, Faculty of Informatics, Masaryk University Brno + rorId: + location: + countryCode: CZ + countryName: Czech Republic + mirId: MIR:00100782 + name: e-cyanobacterium entity at Masaryk University Brno + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.e-cyanobacterium.org/bcs/entity/ + sampleId: '23' + urlPattern: http://e-cyanobacterium.org/bcs/entity/{$id}/ + sampleId: '23' + - created: 2019-06-11T14:17:55.864+0000 + deprecated: false + deprecationDate: + description: E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction ā€” as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models. + id: 1631 + mirId: MIR:00000586 + modified: 2019-06-11T14:17:55.864+0000 + name: E-cyanobacterium model + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: ecyano.model + resources: + - deprecated: false + deprecationDate: + description: e-cyanobacterium entity at Masaryk University Brno + id: 1632 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1629 + location: + countryCode: CZ + countryName: Czech Republic + name: Systems Biology Laboratory, Faculty of Informatics, Masaryk University Brno + rorId: + location: + countryCode: CZ + countryName: Czech Republic + mirId: MIR:00100783 + name: e-cyanobacterium entity at Masaryk University Brno + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://e-cyanobacterium.org/models/ + sampleId: '26' + urlPattern: http://e-cyanobacterium.org/models/model/{$id}/ + sampleId: '26' + - created: 2019-06-11T14:17:56.089+0000 + deprecated: false + deprecationDate: + description: E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction ā€” as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules. + id: 1633 + mirId: MIR:00000587 + modified: 2019-06-11T14:17:56.089+0000 + name: E-cyanobacterium rule + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: ecyano.rule + resources: + - deprecated: false + deprecationDate: + description: e-cyanobacterium entity at Masaryk University Brno + id: 1634 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1629 + location: + countryCode: CZ + countryName: Czech Republic + name: Systems Biology Laboratory, Faculty of Informatics, Masaryk University Brno + rorId: + location: + countryCode: CZ + countryName: Czech Republic + mirId: MIR:00100784 + name: e-cyanobacterium entity at Masaryk University Brno + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.e-cyanobacterium.org/bcs/rule/ + sampleId: '56' + urlPattern: http://e-cyanobacterium.org/bcs/rule/{$id}/ + sampleId: '56' + - created: 2019-06-11T14:17:56.343+0000 + deprecated: false + deprecationDate: + description: The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level). + id: 1635 + mirId: MIR:00000588 + modified: 2019-06-11T14:17:56.343+0000 + name: LINCS Data + namespaceEmbeddedInLui: false + pattern: ^[EL]D[SG]-\d+$ + prefix: lincs.data + resources: + - deprecated: false + deprecationDate: + description: LINCS Data at University of Miami + id: 1636 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1526 + location: + countryCode: US + countryName: United States + name: University of Miami, BD2K-LINCS DCIC + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100785 + name: LINCS Data at University of Miami + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://lincsportal.ccs.miami.edu/datasets/ + sampleId: LDS-1110 + urlPattern: http://lincsportal.ccs.miami.edu/datasets/#/view/{$id} + - deprecated: false + deprecationDate: + description: Lincs through OmicsDI + id: 1637 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100856 + name: Lincs through OmicsDI + official: false + providerCode: omicsdi + resourceHomeUrl: https://www.omicsdi.org/ + sampleId: LDS-1110 + urlPattern: https://www.omicsdi.org/dataset/lincs/{$id} + sampleId: LDS-1110 + - created: 2019-06-11T14:17:56.660+0000 + deprecated: false + deprecationDate: + description: AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century. + id: 1638 + mirId: MIR:00000589 + modified: 2019-06-11T14:17:56.660+0000 + name: AGRICOLA + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: agricola + resources: + - deprecated: false + deprecationDate: + description: AGRICOLA at National Agricultural Library + id: 1640 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1639 + location: + countryCode: US + countryName: United States + name: National Agricultural Library, United States Department of Agriculture + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100789 + name: AGRICOLA at National Agricultural Library + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://agricola.nal.usda.gov/ + sampleId: '50018' + urlPattern: http://ddr.nal.usda.gov/dspace/handle/10113/{$id} + sampleId: '50018' + - created: 2019-06-11T14:17:56.919+0000 + deprecated: false + deprecationDate: + description: The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance. + id: 1641 + mirId: MIR:00000590 + modified: 2019-06-11T14:17:56.919+0000 + name: Mass Spectrometry Controlled Vocabulary + namespaceEmbeddedInLui: true + pattern: ^MS:\d{7}$ + prefix: ms + resources: + - deprecated: false + deprecationDate: + description: Mass Spectrometry Controlled Vocabulary through OLS + id: 1642 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100786 + name: Mass Spectrometry Controlled Vocabulary through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/ms + sampleId: '1000001' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/ms/terms?obo_id=MS:{$id} + - deprecated: false + deprecationDate: + description: Mass Spectrometry Controlled Vocabulary through BioPortal + id: 1643 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100787 + name: Mass Spectrometry Controlled Vocabulary through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: https://bioportal.bioontology.org/ontologies/MS + sampleId: '1000001' + urlPattern: http://purl.bioontology.org/ontology/MS/MS:{$id} + sampleId: '1000001' + - created: 2019-06-11T14:17:57.267+0000 + deprecated: false + deprecationDate: + description: The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations. + id: 1644 + mirId: MIR:00000591 + modified: 2019-06-11T14:17:57.267+0000 + name: Environment Ontology + namespaceEmbeddedInLui: true + pattern: ^ENVO:\d{8}$ + prefix: envo + resources: + - deprecated: false + deprecationDate: + description: The Environment Ontology through OLS + id: 1645 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100790 + name: The Environment Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/envo + sampleId: '09200010' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/envo/terms?obo_id=ENVO:{$id} + - deprecated: false + deprecationDate: + description: The Environment Ontology through BioPortal + id: 1646 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100791 + name: The Environment Ontology through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://purl.bioontology.org/ontology/ENVO/ + sampleId: '09200010' + urlPattern: http://purl.bioontology.org/ontology/ENVO/ENVO:{$id} + sampleId: '09200010' + - created: 2019-06-11T14:17:57.583+0000 + deprecated: false + deprecationDate: + description: An Archival Resource Key (ARK) is a Uniform Resource Locator (URL) that is a multi-purpose persistent identifier for information objects of any type. + id: 1647 + mirId: MIR:00000592 + modified: 2019-06-11T14:17:57.583+0000 + name: ARK + namespaceEmbeddedInLui: true + pattern: ^(ark\:)/*[0-9A-Za-z]+(?:/[\w/.=*+@\$-]*)?(?:\?.*)?$ + prefix: ark + resources: + - deprecated: false + deprecationDate: + description: ARK via the Name-to-Thing resolver. + id: 1649 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1648 + location: + countryCode: US + countryName: United States + name: California Digital Library, University of California Office of the President + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100792 + name: ARK via the Name-to-Thing resolver. + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://n2t.net/ + sampleId: /12345/fk1234 + urlPattern: http://n2t.net/ark:{$id} + sampleId: /12345/fk1234 + - created: 2019-06-11T14:17:57.806+0000 + deprecated: false + deprecationDate: + description: International coverage of the world's leading research organisations, indexing 92% of funding allocated globally. + id: 1650 + mirId: MIR:00000593 + modified: 2019-06-11T14:17:57.806+0000 + name: GRID + namespaceEmbeddedInLui: false + pattern: ^grid\.[0-9]+\.[a-f0-9]{1,2}$ + prefix: grid + resources: + - deprecated: false + deprecationDate: + description: GRID at Digital Science & Research Ltd. + id: 1652 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1651 + location: + countryCode: GB + countryName: United Kingdom + name: Digital Science &amp; Research Ltd, London + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100793 + name: GRID at Digital Science & Research Ltd. + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.grid.ac/ + sampleId: grid.225360.0 + urlPattern: https://www.grid.ac/institutes/{$id} + sampleId: grid.225360.0 + - created: 2019-06-11T14:17:58.068+0000 + deprecated: false + deprecationDate: + description: MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder. + id: 1653 + mirId: MIR:00000594 + modified: 2019-06-11T14:17:58.068+0000 + name: MedGen + namespaceEmbeddedInLui: false + pattern: ^[CN]*\d{4,7}$ + prefix: medgen + resources: + - deprecated: false + deprecationDate: + description: MedGen at NCBI + id: 1654 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100794 + name: MedGen at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/medgen/ + sampleId: '760050' + urlPattern: https://www.ncbi.nlm.nih.gov/medgen/{$id} + sampleId: '760050' + - created: 2019-06-11T14:17:58.273+0000 + deprecated: false + deprecationDate: + description: ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession. + id: 1655 + mirId: MIR:00000595 + modified: 2019-06-11T14:17:58.273+0000 + name: ClinVar Submission + namespaceEmbeddedInLui: false + pattern: ^SCV\d+(\.\d+)?$ + prefix: clinvar.submission + resources: + - deprecated: false + deprecationDate: + description: ClinVar Submission at NCBI + id: 1656 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100795 + name: ClinVar Submission at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: http://www.ncbi.nlm.nih.gov/clinvar/ + sampleId: SCV000151292 + urlPattern: http://www.ncbi.nlm.nih.gov/clinvar?term={$id} + sampleId: SCV000151292 + - created: 2019-06-11T14:17:58.490+0000 + deprecated: false + deprecationDate: + description: ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier. + id: 1657 + mirId: MIR:00000596 + modified: 2019-06-11T14:17:58.490+0000 + name: ClinVar Variant + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: clinvar + resources: + - deprecated: false + deprecationDate: + description: ClinVar Variant at NCBI + id: 1658 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100796 + name: ClinVar Variant at NCBI + official: false + providerCode: ncbi + resourceHomeUrl: http://www.ncbi.nlm.nih.gov/clinvar/ + sampleId: '12345' + urlPattern: https://www.ncbi.nlm.nih.gov/clinvar/variation/{$id} + sampleId: '12345' + - created: 2019-06-11T14:17:59.221+0000 + deprecated: false + deprecationDate: + description: The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form ā€œPREFIX:ACCESSIONā€ or "PROVIDER/PREFIX:ACCESSIONā€ commonly used to specify bioinformatics and other data resources. + id: 1664 + mirId: MIR:00000599 + modified: 2019-06-11T14:17:59.221+0000 + name: Identifiers.org Registry + namespaceEmbeddedInLui: true + pattern: ^MIR:\d{8}$ + prefix: mir + resources: + - deprecated: false + deprecationDate: + description: Identifiers.org Registry through EBI + id: 1665 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100800 + name: Identifiers.org Registry through EBI + official: false + providerCode: ebi + resourceHomeUrl: https://registry.identifiers.org/registry + sampleId: '00100037' + urlPattern: https://registry.identifiers.org/registry?query="MIR:{$id}" + sampleId: '00100037' + - created: 2019-06-11T14:17:59.699+0000 + deprecated: false + deprecationDate: + description: COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes. + id: 1669 + mirId: MIR:00000601 + modified: 2019-06-11T14:17:59.699+0000 + name: COSMIC Gene + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9]+$ + prefix: cosmic + resources: + - deprecated: false + deprecationDate: + description: COSMIC Gene at Sanger + id: 1670 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1393 + location: + countryCode: GB + countryName: United Kingdom + name: Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100802 + name: COSMIC Gene at Sanger + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://cancer.sanger.ac.uk/cosmic/ + sampleId: BRAF + urlPattern: http://cancer.sanger.ac.uk/cosmic/gene/overview?ln={$id} + sampleId: BRAF + - created: 2019-06-11T14:17:59.890+0000 + deprecated: false + deprecationDate: + description: The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype. + id: 1671 + mirId: MIR:00000602 + modified: 2019-06-11T14:17:59.890+0000 + name: dbGaP + namespaceEmbeddedInLui: false + pattern: ^phs[0-9]{6}(.v\d+.p\d+)?$ + prefix: dbgap + resources: + - deprecated: false + deprecationDate: + description: dbGaP through NCBI + id: 1672 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100803 + name: dbGaP through NCBI + official: true + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/projects/gap + sampleId: phs000768.v2.p1 + urlPattern: https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id={$id} + sampleId: phs000768.v2.p1 + - created: 2019-06-11T14:18:00.081+0000 + deprecated: false + deprecationDate: + description: An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch. + id: 1673 + mirId: MIR:00000603 + modified: 2019-06-11T14:18:00.081+0000 + name: Information Artifact Ontology + namespaceEmbeddedInLui: false + pattern: ^\d{7}$ + prefix: iao + resources: + - deprecated: false + deprecationDate: + description: IAO through Ontobee + id: 1675 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1674 + location: + countryCode: US + countryName: United States + name: University of Pennsylvania + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100804 + name: IAO through Ontobee + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.ontobee.org/ontology/IAO + sampleId: '0000030' + urlPattern: http://purl.obolibrary.org/obo/IAO_{$id} + sampleId: '0000030' + - created: 2019-06-11T14:18:00.311+0000 + deprecated: false + deprecationDate: + description: The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis. + id: 1676 + mirId: MIR:00000604 + modified: 2019-06-11T14:18:00.311+0000 + name: Genomic Data Commons Data Portal + namespaceEmbeddedInLui: false + pattern: ^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$ + prefix: gdc + resources: + - deprecated: false + deprecationDate: + description: Genomic Data Commons + id: 1678 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1677 + location: + countryCode: US + countryName: United States + name: National Cancer Institute Genomic Data Commons, NIH + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100805 + name: Genomic Data Commons + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://gdc.cancer.gov + sampleId: ae8c77fe-e6c8-44d5-8265-4a38c637bbef + urlPattern: https://portal.gdc.cancer.gov/cases/{$id} + sampleId: ae8c77fe-e6c8-44d5-8265-4a38c637bbef + - created: 2019-06-11T14:18:00.566+0000 + deprecated: false + deprecationDate: + description: The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes). + id: 1679 + mirId: MIR:00000605 + modified: 2019-06-11T14:18:00.566+0000 + name: OMIT + namespaceEmbeddedInLui: false + pattern: ^\d{7}$ + prefix: omit + resources: + - deprecated: false + deprecationDate: + description: Ontology for miRNA Target (OMIT) through OLS + id: 1680 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100806 + name: Ontology for miRNA Target (OMIT) through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/omit/ + sampleId: '0005506' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_{$id} + sampleId: '0005506' + - created: 2019-06-11T14:18:00.782+0000 + deprecated: false + deprecationDate: + description: The coding sequence or protein identifiers as maintained in INSDC. + id: 1681 + mirId: MIR:00000606 + modified: 2019-06-11T14:18:00.782+0000 + name: INSDC CDS + namespaceEmbeddedInLui: false + pattern: ^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$ + prefix: insdc.cds + resources: + - deprecated: false + deprecationDate: + description: INSDC CDS through DDBJ + id: 1684 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 121 + location: + countryCode: JP + countryName: Japan + name: DNA Data Bank of Japan, Mishima, Shizuoka + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100809 + name: INSDC CDS through DDBJ + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://getentry.ddbj.nig.ac.jp + sampleId: AAA35559 + urlPattern: http://getentry.ddbj.nig.ac.jp/getentry/dad/{$id} + - deprecated: false + deprecationDate: + description: INSDC CDS through ENA + id: 1682 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100807 + name: INSDC CDS through ENA + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.ebi.ac.uk/ena + sampleId: AAA35559 + urlPattern: https://www.ebi.ac.uk/ena/data/view/{$id} + - deprecated: false + deprecationDate: + description: INSDC CDS through NCBI + id: 1683 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100808 + name: INSDC CDS through NCBI + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/protein/ + sampleId: AAA35559 + urlPattern: https://www.ncbi.nlm.nih.gov/protein/{$id} + sampleId: AAA35559 + - created: 2019-06-11T14:18:01.543+0000 + deprecated: false + deprecationDate: + description: GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data. + id: 1688 + mirId: MIR:00000608 + modified: 2019-06-11T14:18:01.543+0000 + name: GlyTouCan + namespaceEmbeddedInLui: false + pattern: ^G[0-9]{5}[A-Z]{2}$ + prefix: glytoucan + resources: + - 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MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway. + id: 1691 + mirId: MIR:00000609 + modified: 2019-06-11T14:18:01.783+0000 + name: MetaCyc Compound + namespaceEmbeddedInLui: false + pattern: ^CPD-\d{5}$ + prefix: metacyc.compound + resources: + - deprecated: false + deprecationDate: + description: MetaCyc Metabolic Pathway Database + id: 1693 + institution: + description: SRI is an independent, nonprofit research center that works with clients to take the most advanced R&D from the laboratory to the marketplace. + homeUrl: https://www.sri.com/ + id: 1692 + location: + countryCode: US + countryName: United States + name: SRI International + rorId: https://ror.org/05s570m15 + location: + countryCode: US + countryName: United States + mirId: MIR:00100813 + name: MetaCyc Metabolic Pathway Database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://metacyc.org + sampleId: CPD-10330 + urlPattern: https://metacyc.org/compound?orgid=META&id={$id} + sampleId: CPD-10330 + - created: 2019-06-11T14:18:02.043+0000 + deprecated: false + deprecationDate: + description: MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway. + id: 1694 + mirId: MIR:00000610 + modified: 2019-06-11T14:18:02.043+0000 + name: MetaCyc Reaction + namespaceEmbeddedInLui: false + pattern: ^RXN-\d{5}$ + prefix: metacyc.reaction + resources: + - deprecated: false + deprecationDate: + description: MetaCyc Metabolic Pathway Database - Reaction + id: 1695 + institution: + description: SRI is an independent, nonprofit research center that works with clients to take the most advanced R&D from the laboratory to the marketplace. + homeUrl: https://www.sri.com/ + id: 1692 + location: + countryCode: US + countryName: United States + name: SRI International + rorId: https://ror.org/05s570m15 + location: + countryCode: US + countryName: United States + mirId: MIR:00100814 + name: MetaCyc Metabolic Pathway Database - Reaction + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://metacyc.org + sampleId: RXN-14904 + urlPattern: https://metacyc.org/META/NEW-IMAGE?type=REACTION&object={$id} + sampleId: RXN-14904 + - 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deprecated: false + deprecationDate: + description: MarRef through SfB + id: 1704 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1703 + location: + countryCode: NO + countryName: Norway + name: Center for Bioinformatics (SfB), UiT The Arctic university of Norway + rorId: + location: + countryCode: NO + countryName: Norway + mirId: MIR:00100817 + name: MarRef through SfB + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://mmp.sfb.uit.no/databases/marref/ + sampleId: MMP3312982.2 + urlPattern: https://mmp.sfb.uit.no/databases/marref/#/records/{$id} + sampleId: MMP3312982.2 + - created: 2019-06-11T14:18:02.934+0000 + deprecated: false + deprecationDate: + description: MarDB includes all sequenced marine microbial genomes regardless of level of completeness. + id: 1705 + mirId: MIR:00000614 + modified: 2019-06-11T14:18:02.934+0000 + name: MarDB + namespaceEmbeddedInLui: false + pattern: ^MMP\d+.\d+$ + prefix: mmp.db + resources: + - deprecated: false + deprecationDate: + description: MarDB through SfB + id: 1706 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1703 + location: + countryCode: NO + countryName: Norway + name: Center for Bioinformatics (SfB), UiT The Arctic university of Norway + rorId: + location: + countryCode: NO + countryName: Norway + mirId: MIR:00100818 + name: MarDB through SfB + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://mmp.sfb.uit.no/databases/mardb/ + sampleId: MMP02954345.1 + urlPattern: https://mmp.sfb.uit.no/databases/mardb/#/records/{$id} + sampleId: MMP02954345.1 + - 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deprecated: false + deprecationDate: + description: AOPWiki + id: 1714 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1713 + location: + countryCode: US + countryName: United States + name: European Commision - DG Joint Research Centre and U.S Environmental Protection Agency + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100821 + name: AOPWiki + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://aopwiki.org/ + sampleId: '98' + urlPattern: https://aopwiki.org/aops/{$id} + sampleId: '98' + - created: 2019-06-11T14:18:03.826+0000 + deprecated: false + deprecationDate: + description: NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA. + id: 1715 + mirId: MIR:00000618 + modified: 2019-06-11T14:18:03.826+0000 + name: NASA GeneLab + namespaceEmbeddedInLui: false + pattern: ^GLDS-\d+$ + prefix: ngl + resources: + - 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We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence. + id: 1699 + mirId: MIR:00000612 + modified: 2021-02-01T16:12:25.234+0000 + name: CATH Protein Structural Domain Superfamily + namespaceEmbeddedInLui: false + pattern: ^[1-6]\.[0-9]+\.[0-9]+\.[0-9]+$ + prefix: cath + resources: + - deprecated: false + deprecationDate: + description: CATH Node through UCL + id: 1701 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1700 + location: + countryCode: GB + countryName: United Kingdom + name: University College London + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100816 + name: CATH Node through UCL + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.cathdb.info + sampleId: 1.10.8.10 + urlPattern: http://www.cathdb.info/cathnode/{$id} + sampleId: 1.10.8.10 + - created: 2019-06-11T14:17:59.000+0000 + deprecated: false + deprecationDate: + description: 'The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines.' + id: 1662 + mirId: MIR:00000598 + modified: 2021-02-01T16:38:40.925+0000 + name: Cellosaurus + namespaceEmbeddedInLui: false + pattern: ^CVCL_[A-Z0-9]{4}$ + prefix: cellosaurus + resources: + - deprecated: false + deprecationDate: + description: Cellosaurus through SIB + id: 1663 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100799 + name: Cellosaurus through SIB + official: false + providerCode: sib + resourceHomeUrl: https://web.expasy.org/cellosaurus/ + sampleId: CVCL_0030 + urlPattern: https://web.expasy.org/cellosaurus/{$id} + sampleId: CVCL_0030 + - created: 2019-06-11T14:18:04.072+0000 + deprecated: false + deprecationDate: + description: Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features. + id: 1718 + mirId: MIR:00000619 + modified: 2019-06-11T14:18:04.072+0000 + name: Human Endogenous Retrovirus Database + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9\-\_]+$ + prefix: erv + resources: + - deprecated: false + deprecationDate: + description: Human Endogenous Retrovirus Database + id: 1720 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1719 + location: + countryCode: CZ + countryName: Czech Republic + name: Institute of Molecular Genetics, Academy of Sciences of the Czech Republic + rorId: + location: + countryCode: CZ + countryName: Czech Republic + mirId: MIR:00100823 + name: Human Endogenous Retrovirus Database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://herv.img.cas.cz/ + sampleId: THE1B + urlPattern: https://herv.img.cas.cz/s/{$id} + sampleId: THE1B + - created: 2019-06-11T14:18:04.316+0000 + deprecated: false + deprecationDate: + description: The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs). + id: 1721 + mirId: MIR:00000620 + modified: 2019-06-11T14:18:04.316+0000 + name: Natural Product-Drug Interaction Research Data Repository + namespaceEmbeddedInLui: false + pattern: ^[0-9]+$ + prefix: napdi + resources: + - deprecated: false + deprecationDate: + description: Natural Product-Drug Interaction Research Data Repository + id: 1723 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1722 + location: + countryCode: US + countryName: United States + name: National Center for Complementary and Integrative Health, National Institutes of Health, Washington D.C. + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100824 + name: Natural Product-Drug Interaction Research Data Repository + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://repo.napdi.org/ + sampleId: '28' + urlPattern: https://repo.napdi.org/study/{$id} + sampleId: '28' + - created: 2019-06-11T14:18:04.557+0000 + deprecated: false + deprecationDate: + description: arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome. + id: 1724 + mirId: MIR:00000621 + modified: 2019-06-11T14:18:04.557+0000 + name: ArrayMap + namespaceEmbeddedInLui: false + pattern: ^[\w\-:,]{3,64}$ + prefix: arraymap + resources: + - deprecated: false + deprecationDate: + description: ArrayMap + id: 1725 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1385 + location: + countryCode: CH + countryName: Switzerland + name: Institute of Molecular Life Sciences, University of Zurich, Zurich + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100825 + name: ArrayMap + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.arraymap.org + sampleId: icdom:8500_3 + urlPattern: https://www.arraymap.org/pgx:{$id} + sampleId: icdom:8500_3 + - created: 2019-06-11T14:18:04.748+0000 + deprecated: false + deprecationDate: + description: The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. 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The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies. + id: 1732 + mirId: MIR:00000624 + modified: 2019-06-11T14:18:05.215+0000 + name: SISu + namespaceEmbeddedInLui: false + pattern: ^[0-9]+:[0-9]+$ + prefix: sisu + resources: + - deprecated: false + deprecationDate: + description: SISu + id: 1734 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1733 + location: + countryCode: FI + countryName: Finland + name: Sequencing Initiative Suomi project (SISu), Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki + rorId: + location: + countryCode: FI + countryName: Finland + mirId: MIR:00100828 + name: SISu + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.sisuproject.fi/ + sampleId: 17:41223048 + urlPattern: http://search.sisuproject.fi/#/variant/{$id} + sampleId: 17:41223048 + - created: 2019-06-11T14:18:05.468+0000 + deprecated: false + deprecationDate: + description: The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it. + id: 1735 + mirId: MIR:00000625 + modified: 2019-06-11T14:18:05.468+0000 + name: Universal Spectrum Identifier + namespaceEmbeddedInLui: true + pattern: ^mzspec:.+$ + prefix: mzspec + resources: + - deprecated: false + deprecationDate: + description: Universal Spectrum Identifier through Peptide Atlas + id: 1737 + institution: + description: ISB was created in 2000 as the first-ever institute dedicated to systems biology. + homeUrl: https://isbscience.org/ + id: 193 + location: + countryCode: US + countryName: United States + name: Institute for Systems Biology + rorId: https://ror.org/02tpgw303 + location: + countryCode: US + countryName: United States + mirId: MIR:00100829 + name: Universal Spectrum Identifier through Peptide Atlas + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum + sampleId: PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2 + urlPattern: https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum?usi=mzspec:{$id} + - deprecated: false + deprecationDate: + description: Institute for Systems Biology (ISB), Seattle, USA is an independent research institute focusing on systems biology. + id: 2394 + institution: + description: ISB was created in 2000 as the first-ever institute dedicated to systems biology. + homeUrl: https://isbscience.org/ + id: 193 + location: + countryCode: US + countryName: United States + name: Institute for Systems Biology + rorId: https://ror.org/02tpgw303 + location: + countryCode: US + countryName: United States + mirId: MIR:00000771 + name: Institute for Systems Biology, Seattle, USA + official: true + providerCode: pc + resourceHomeUrl: http://proteomecentral.proteomexchange.org/ + sampleId: PXD000865:00603_F01_P004608_B00F_A00_R1:scan:14453:SSLLDVLAAR/2 + urlPattern: http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:{$id} + sampleId: PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2 + - created: 2019-06-11T14:18:05.694+0000 + deprecated: false + deprecationDate: + description: Repeated CRISPR ("clustered regularly interspaced short palindromic repeats") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data. + id: 1738 + mirId: MIR:00000626 + modified: 2019-06-11T14:18:05.694+0000 + name: CRISPRdb + namespaceEmbeddedInLui: false + pattern: ^[0-9]+$ + prefix: crisprdb + resources: + - deprecated: false + deprecationDate: + description: CRISPRdb + id: 1740 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1739 + location: + countryCode: FR + countryName: France + name: UniversitĆ© Paris-Sud, Institut de GĆ©nĆ©tique et Microbiologie, Orsay, + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100830 + name: CRISPRdb + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://crispr.i2bc.paris-saclay.fr/ + sampleId: '551115' + urlPattern: http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]={$id} + sampleId: '551115' + - created: 2019-06-11T14:18:05.948+0000 + deprecated: false + deprecationDate: + description: GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. + id: 1741 + mirId: MIR:00000627 + modified: 2019-06-11T14:18:05.948+0000 + name: GnpIS + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9]+$ + prefix: gnpis + resources: + - deprecated: false + deprecationDate: + description: GnpIS + id: 1743 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1742 + location: + countryCode: FR + countryName: France + name: URGI (Research Unit in Genomics-Info), INRA de Versailles, Route de Saint-Cyr, Versailles + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100831 + name: GnpIS + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://urgi.versailles.inra.fr/gnpis/ + sampleId: AY109603 + urlPattern: https://urgi.versailles.inra.fr/gnpis/#result/term={$id} + sampleId: AY109603 + - created: 2019-06-11T14:18:06.185+0000 + deprecated: false + deprecationDate: + description: Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects. + id: 1744 + mirId: MIR:00000628 + modified: 2019-06-11T14:18:06.185+0000 + name: LiceBase + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9\-\/]+$ + prefix: licebase + resources: + - deprecated: false + deprecationDate: + description: LiceBase + id: 1746 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1745 + location: + countryCode: NO + countryName: Norway + name: Sea Lice Research Centre (SLRC), University of Bergen + rorId: + location: + countryCode: NO + countryName: Norway + mirId: MIR:00100832 + name: LiceBase + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://licebase.org + sampleId: EMLSAT00000003403 + urlPattern: https://licebase.org/?q={$id} + sampleId: EMLSAT00000003403 + - created: 2019-06-11T14:18:06.412+0000 + deprecated: false + deprecationDate: + description: The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands. + id: 1747 + mirId: MIR:00000629 + modified: 2019-06-11T14:18:06.412+0000 + name: SugarBind + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z]+\/[0-9]+$ + prefix: sugarbind + resources: + - deprecated: false + deprecationDate: + description: SugarBind + id: 1749 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1748 + location: + countryCode: CH + countryName: Switzerland + name: Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100833 + name: SugarBind + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://sugarbind.expasy.org/ + sampleId: lectins/172 + urlPattern: http://sugarbind.expasy.org/{$id} + sampleId: lectins/172 + - created: 2019-06-11T14:18:06.653+0000 + deprecated: false + deprecationDate: + description: RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases. + id: 1750 + mirId: MIR:00000630 + modified: 2019-06-11T14:18:06.653+0000 + name: RNAcentral + namespaceEmbeddedInLui: false + pattern: ^URS[0-9A-F]{10}(\_\d+)?$ + prefix: rnacentral + resources: + - deprecated: false + deprecationDate: + description: RNAcentral through EMBL-EBI + id: 1751 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100834 + name: RNAcentral through EMBL-EBI + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://rnacentral.org/ + sampleId: URS0000759CF4 + urlPattern: https://rnacentral.org/rna/{$id} + sampleId: URS0000759CF4 + - created: 2019-06-11T14:18:06.853+0000 + deprecated: false + deprecationDate: + description: MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis. + id: 1752 + mirId: MIR:00000631 + modified: 2019-06-11T14:18:06.853+0000 + name: MicroScope + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: microscope + resources: + - deprecated: false + deprecationDate: + description: MicroScope + id: 1754 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1753 + location: + countryCode: FR + countryName: France + name: UniversitĆ© Ɖvry-Val-d'Essonne, CEA, Institut de GĆ©nomique - Genoscope, Laboratoire d'Analyses Bioinformatiques pour la GĆ©nomique et le MĆ©tabolisme, Evry + rorId: + location: + countryCode: FR + countryName: France + mirId: MIR:00100836 + name: MicroScope + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.genoscope.cns.fr/agc/microscope + sampleId: '5601141' + urlPattern: http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id={$id} + sampleId: '5601141' + - created: 2019-06-11T14:18:07.113+0000 + deprecated: false + deprecationDate: + description: A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form. + id: 1755 + mirId: MIR:00000632 + modified: 2019-06-11T14:18:07.113+0000 + name: SwissRegulon + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9]+$ + prefix: swissregulon + resources: + - deprecated: false + deprecationDate: + description: SwissRegulon + id: 1756 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100837 + name: SwissRegulon + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://swissregulon.unibas.ch + sampleId: AHR + urlPattern: http://swissregulon.unibas.ch/query/{$id} + sampleId: AHR + - created: 2019-06-11T14:18:07.321+0000 + deprecated: false + deprecationDate: + description: Database of validation results for ligands and non-standard residues in the Protein Data Bank. + id: 1757 + mirId: MIR:00000633 + modified: 2019-06-11T14:18:07.321+0000 + name: ValidatorDB + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9\/]+$ + prefix: validatordb + resources: + - deprecated: false + deprecationDate: + description: ValidatorDB + id: 1759 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1758 + location: + countryCode: CZ + countryName: Czech Republic + name: Central European Institute of Technology + rorId: + location: + countryCode: CZ + countryName: Czech Republic + mirId: MIR:00100838 + name: ValidatorDB + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ + sampleId: ByStructure/2h6o + urlPattern: https://webchem.ncbr.muni.cz/Platform/ValidatorDb/{$id} + sampleId: ByStructure/2h6o + - created: 2019-06-11T14:18:07.548+0000 + deprecated: false + deprecationDate: + description: Database of the dielectric properties of biological tissues. + id: 1760 + mirId: MIR:00000634 + modified: 2019-06-11T14:18:07.548+0000 + name: Bio-MINDER Tissue Database + namespaceEmbeddedInLui: false + pattern: ^[a-z0-9\-]+$ + prefix: biominder + resources: + - deprecated: false + deprecationDate: + description: Bio-MINDER Tissue Database + id: 1762 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1761 + location: + countryCode: IE + countryName: Ireland + name: RWTH Aachen University / NUIG Galway + rorId: + location: + countryCode: IE + countryName: Ireland + mirId: MIR:00100839 + name: Bio-MINDER Tissue Database + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://datalab.rwth-aachen.de/MINDER + sampleId: aef4c195-9cf9-46db-a12a-7cfd1ff3eec3 + urlPattern: https://datalab.rwth-aachen.de/MINDER/resource/{$id} + sampleId: aef4c195-9cf9-46db-a12a-7cfd1ff3eec3 + - created: 2019-06-11T14:18:07.777+0000 + deprecated: false + deprecationDate: + description: Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images. + id: 1763 + mirId: MIR:00000635 + modified: 2019-06-11T14:18:07.777+0000 + name: NeuroVault Collection + namespaceEmbeddedInLui: false + pattern: ^[1-9][0-9]*$ + prefix: neurovault.collection + resources: + - deprecated: false + deprecationDate: + description: NeuroVault Collection + id: 1764 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 98 + location: + countryCode: US + countryName: United States + name: Stanford University + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100840 + name: NeuroVault Collection + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://neurovault.org + sampleId: '3304' + urlPattern: https://neurovault.org/collections/{$id} + sampleId: '3304' + - created: 2019-06-11T14:18:07.981+0000 + deprecated: false + deprecationDate: + description: The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease. + id: 1765 + mirId: MIR:00000636 + modified: 2019-06-11T14:18:07.981+0000 + name: VMH metabolite + namespaceEmbeddedInLui: false + pattern: '[a-zA-Z0-9_\(\_\)\[\]]+' + prefix: vmhmetabolite + resources: + - deprecated: false + deprecationDate: + description: VMH metabolite + id: 1767 + institution: + description: Organization information obtained from ROR API using ROR ID 'https://ror.org/03bea9k73' with Wikidata IDs [Q644478], and ISNI IDs [0000 0004 0488 0789] + homeUrl: http://www.nuigalway.ie/ + id: 2496 + location: + countryCode: IE + countryName: Ireland + name: National University of Ireland, Galway + rorId: + location: + countryCode: IE + countryName: Ireland + mirId: MIR:00100841 + name: VMH metabolite + official: false + providerCode: NUI + resourceHomeUrl: https://www.vmh.life/ + sampleId: h2o + urlPattern: https://www.vmh.life/#metabolite/{$id} + sampleId: h2o + - created: 2019-06-11T14:18:08.710+0000 + deprecated: false + deprecationDate: + description: nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi. + id: 1773 + mirId: MIR:00000639 + modified: 2019-06-11T14:18:08.710+0000 + name: Nuclear Magnetic Resonance Controlled Vocabulary + namespaceEmbeddedInLui: true + pattern: ^NMR:\d+$ + prefix: nmr + resources: + - deprecated: false + deprecationDate: + description: NMR through OLS + id: 1774 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100844 + name: NMR through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/nmrcv + sampleId: '1000003' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:{$id} + sampleId: '1000003' + - created: 2019-06-11T14:18:08.921+0000 + deprecated: false + deprecationDate: + description: The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease. + id: 1775 + mirId: MIR:00000640 + modified: 2019-06-11T14:18:08.921+0000 + name: VMH reaction + namespaceEmbeddedInLui: false + pattern: '[a-zA-Z0-9_\(\_\)\[\]]+' + prefix: vmhreaction + resources: + - deprecated: false + deprecationDate: + description: VMH reaction + id: 1776 + institution: + description: Organization information obtained from ROR API using ROR ID 'https://ror.org/03bea9k73' with Wikidata IDs [Q644478], and ISNI IDs [0000 0004 0488 0789] + homeUrl: http://www.nuigalway.ie/ + id: 2496 + location: + countryCode: IE + countryName: Ireland + name: National University of Ireland, Galway + rorId: + location: + countryCode: IE + countryName: Ireland + mirId: MIR:00100845 + name: VMH reaction + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.vmh.life/ + sampleId: HEX1 + urlPattern: https://www.vmh.life/#reaction/{$id} + sampleId: HEX1 + - created: 2019-06-11T14:18:09.136+0000 + deprecated: false + deprecationDate: + description: The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001). + id: 1777 + mirId: MIR:00000641 + modified: 2019-06-11T14:18:09.136+0000 + name: Astrophysics Source Code Library + namespaceEmbeddedInLui: false + pattern: ^[0-9\.]+$ + prefix: ascl + resources: + - deprecated: false + deprecationDate: + description: Astrophysics Source Code Library + id: 1779 + institution: + description: The Astrophysics Source Code Library (ASCL), founded in 1999 by Robert Nemiroff and John Wallin, takes an active approach to sharing astrophysical source code. + homeUrl: http://ascl.net/ + id: 1778 + location: + countryCode: US + countryName: United States + name: Astrophysics Source Code Library + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100846 + name: Astrophysics Source Code Library + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://ascl.net/ + sampleId: '1801.012' + urlPattern: http://ascl.net/{$id} + sampleId: '1801.012' + - created: 2019-06-11T14:18:09.365+0000 + deprecated: false + deprecationDate: + description: FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects. + id: 1780 + mirId: MIR:00000642 + modified: 2019-06-11T14:18:09.365+0000 + name: FaceBase Data Repository + namespaceEmbeddedInLui: false + pattern: ^FB\d{8}$ + prefix: facebase + resources: + - deprecated: false + deprecationDate: + description: FaceBase Data Repository + id: 1782 + institution: + description: The University of Southern California is a leading private research university located in Los Angeles ā€” a global center for arts, technology and international business. It is home to the College of Letters, Arts and Sciences and 21 exceptional academic schools and units. USCā€™s Health Sciences campus houses renowned specialized care and research in cancer, stem cell and regenerative medicine, orthopedics and sports medicine. The university is the largest private sector employer in the city of Los Angeles, responsible for $8 billion annually in economic activity in the region. + homeUrl: https://www.usc.edu/ + id: 1781 + location: + countryCode: US + countryName: United States + name: University of Southern California + rorId: https://ror.org/03taz7m60 + location: + countryCode: US + countryName: United States + mirId: MIR:00100847 + name: FaceBase Data Repository + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.facebase.org + sampleId: FB00000917 + urlPattern: https://www.facebase.org/data/record/#1/isa:dataset/accession={$id} + sampleId: FB00000917 + - created: 2019-06-11T14:18:09.598+0000 + deprecated: false + deprecationDate: + description: The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract. + id: 1783 + mirId: MIR:00000643 + modified: 2019-06-11T14:18:09.598+0000 + name: GUDMAP + namespaceEmbeddedInLui: false + pattern: ^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$ + prefix: gudmap + resources: + - deprecated: false + deprecationDate: + description: GUDMAP + id: 1785 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1784 + location: + countryCode: US + countryName: United States + name: GenitoUrinary Development Molecular Anatomy Project (GUDMAP) Consortium + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100848 + name: GUDMAP + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.gudmap.org/ + sampleId: Q-2958 + urlPattern: https://gudmap.org/id/{$id} + sampleId: Q-2958 + - created: 2019-06-11T14:18:09.859+0000 + deprecated: false + deprecationDate: + description: The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union. + id: 1786 + mirId: MIR:00000644 + modified: 2019-06-11T14:18:09.859+0000 + name: JRC Data Catalogue + namespaceEmbeddedInLui: false + pattern: ^[a-z0-9\-_]+$ + prefix: eu89h + resources: + - deprecated: false + deprecationDate: + description: JRC Data Catalogue + id: 1788 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1787 + location: + countryCode: BE + countryName: Belgium + name: European Commission, Joint Research Centre (JRC) + rorId: + location: + countryCode: BE + countryName: Belgium + mirId: MIR:00100849 + name: JRC Data Catalogue + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://data.jrc.ec.europa.eu/ + sampleId: jrc-eurl-ecvam-chemagora + urlPattern: http://data.europa.eu/89h/{$id} + sampleId: jrc-eurl-ecvam-chemagora + - created: 2019-06-11T14:18:10.316+0000 + deprecated: false + deprecationDate: + description: Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC). + id: 1792 + mirId: MIR:00000646 + modified: 2019-06-11T14:18:10.316+0000 + name: Metabolomics Workbench Study + namespaceEmbeddedInLui: false + pattern: ^ST[0-9]{6}$ + prefix: mw.study + resources: + - 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It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies. + id: 1834 + mirId: MIR:00000661 + modified: 2019-06-11T14:18:14.340+0000 + name: FoodOn Food Ontology + namespaceEmbeddedInLui: true + pattern: ^FOODON:[0-9]{8}$ + prefix: foodon + resources: + - deprecated: false + deprecationDate: + description: FoodOn Food Ontology through OLS + id: 1835 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100879 + name: FoodOn Food Ontology through OLS + official: false + providerCode: ebi + resourceHomeUrl: https://foodon.org + sampleId: '03307879' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:{$id} + sampleId: '03307879' + - created: 2019-06-11T14:18:14.565+0000 + deprecated: false + deprecationDate: + description: The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns. + id: 1836 + mirId: MIR:00000662 + modified: 2019-06-11T14:18:14.565+0000 + name: 'ENCODE: Encyclopedia of DNA Elements' + namespaceEmbeddedInLui: false + pattern: ^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$ + prefix: encode + resources: + - deprecated: false + deprecationDate: + description: 'ENCODE: Encyclopedia of DNA Elements' + id: 1838 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1837 + location: + countryCode: US + countryName: United States + name: ENCODE Consortium + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100880 + name: 'ENCODE: Encyclopedia of DNA Elements' + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: www.encodeproject.org + sampleId: ENCSR163RYW + urlPattern: https://www.encodeproject.org/{$id} + sampleId: ENCSR163RYW + - created: 2019-06-11T14:18:14.830+0000 + deprecated: false + deprecationDate: + description: The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation. + id: 1839 + mirId: MIR:00000663 + modified: 2019-06-11T14:18:14.830+0000 + name: GTEx + namespaceEmbeddedInLui: false + pattern: ^\w.+$ + prefix: gtex + resources: + - deprecated: false + deprecationDate: + description: The GTEx Project + id: 1841 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1840 + location: + countryCode: US + countryName: United States + name: The Broad Institute of MIT and Harvard + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100881 + name: The GTEx Project + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.gtexportal.org + sampleId: BRIP1 + urlPattern: https://www.gtexportal.org/home/gene/{$id} + sampleId: BRIP1 + - created: 2019-06-11T14:18:15.139+0000 + deprecated: false + deprecationDate: + description: 'RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. 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For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue. + id: 1856 + mirId: MIR:00000670 + modified: 2019-06-11T14:18:16.611+0000 + name: Amazon Standard Identification Number (ASIN) + namespaceEmbeddedInLui: false + pattern: ^[0-9]{10}$ + prefix: asin + resources: + - deprecated: false + deprecationDate: + description: Amazon Standard Identification Number (ASIN) + id: 1858 + institution: + description: is an American multinational technology company based in Seattle, Washington, that focuses on e-commerce, cloud computing, digital streaming, and artificial intelligence + homeUrl: https://amazon.com + id: 1857 + location: + countryCode: US + countryName: United States + name: Amazon + rorId: https://ror.org/04mv4n011 + location: + countryCode: US + countryName: United States + mirId: MIR:00100888 + name: Amazon Standard Identification Number (ASIN) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.amazon.co.uk/gp/help/customer/display.html/277-3416785-8259466?ie=UTF8&nodeId=898182 + sampleId: '0471491039' + urlPattern: https://amzn.com/{$id} + sampleId: '0471491039' + - created: 2019-06-11T14:18:16.879+0000 + deprecated: false + deprecationDate: + description: Assists in resolving data across cloud resources. + id: 1859 + mirId: MIR:00000671 + modified: 2019-06-11T14:18:16.879+0000 + name: Data Object Service + namespaceEmbeddedInLui: false + pattern: ^[a-zA-Z0-9\-:#/\.]+$ + prefix: ga4ghdos + resources: + - deprecated: false + deprecationDate: + description: Data Object Service + id: 1860 + institution: + description: >- + is a public research university in San Diego, California. + + Established in 1960 near the pre-existing Scripps Institution of Oceanography, UC San Diego is the seventh-oldest of the 10 University of California campuses and offers over 200 undergraduate and graduate degree programs, enrolling approximately 30,000 undergraduate and 8,500 graduate students. + homeUrl: https://ucsd.edu/ + id: 190 + location: + countryCode: US + countryName: United States + name: University of California, San Diego + rorId: https://ror.org/0168r3w48 + location: + countryCode: US + countryName: United States + mirId: MIR:00100895 + name: Data Object Service + official: false + providerCode: ucsd + resourceHomeUrl: http://github.com/ga4gh/data-object-service-schemas + sampleId: dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d + urlPattern: https://dataguids.org/ga4gh/dos/v1/dataobjects/{$id} + sampleId: dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d + - created: 2019-06-11T14:18:17.129+0000 + deprecated: false + deprecationDate: + description: FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. 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The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception. + id: 1904 + mirId: MIR:00000687 + modified: 2019-06-11T14:18:20.855+0000 + name: SPDX License List + namespaceEmbeddedInLui: false + pattern: ^[0-9A-Za-z\-.]+$ + prefix: spdx + resources: + - deprecated: false + deprecationDate: + description: SPDX License List + id: 1906 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1905 + location: + countryCode: US + countryName: United States + name: SPDX Workgroup a Linux Foundation Project + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100918 + name: SPDX License List + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://spdx.org + sampleId: CC-BY-1.0 + urlPattern: https://spdx.org/licenses/{$id} + sampleId: CC-BY-1.0 + - created: 2019-06-11T14:18:21.119+0000 + deprecated: false + deprecationDate: + description: SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. 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The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication. + id: 1921 + mirId: MIR:00000694 + modified: 2019-06-11T14:18:22.448+0000 + name: BioStudies database + namespaceEmbeddedInLui: false + pattern: ^S-[A-Z]{4}[A-Z\d\-]+$ + prefix: biostudies + resources: + - deprecated: false + deprecationDate: + description: BioStudies database + id: 1922 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100926 + name: BioStudies database + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/biostudies/ + sampleId: S-EPMC6266652 + urlPattern: https://www.ebi.ac.uk/biostudies/studies/{$id} + sampleId: S-EPMC6266652 + - created: 2019-06-11T14:18:22.646+0000 + deprecated: false + deprecationDate: + description: The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR. + id: 1923 + mirId: MIR:00000695 + modified: 2019-06-11T14:18:22.646+0000 + name: Cancer Data Standards Registry and Repository + namespaceEmbeddedInLui: false + pattern: ^[0-9]*$ + prefix: cadsr + resources: + - deprecated: false + deprecationDate: + description: Cancer Data Standards Registry and Repository + id: 1925 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1924 + location: + countryCode: US + countryName: United States + name: National Cancer Institute, National Institutes of Health, Bethesda, MD + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100928 + name: Cancer Data Standards Registry and Repository + official: true + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://wiki.nci.nih.gov/display/caDSR/caDSR+Wiki + sampleId: '3771992' + urlPattern: https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId={$id}] + sampleId: '3771992' + - created: 2019-06-19T15:38:51.382+0000 + deprecated: false + deprecationDate: + description: The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project. + id: 1942 + mirId: MIR:00000763 + modified: 2019-06-19T15:38:51.382+0000 + name: European Registry of Materials + namespaceEmbeddedInLui: false + pattern: ^ERM[0-9]{8}$ + prefix: erm + resources: + - deprecated: false + deprecationDate: + description: The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project. + id: 1943 + institution: + description: >- + Maastricht University (UM) is the most international university in + the Netherlands and, with 18,000 students and 4,400 employees, is + still growing. The university stands out for its innovative + education model, international character and multidisciplinary + approach to research and education. + + Thanks to its high-quality research and study programmes as well as a strong focus on social engagement, UM has quickly built up a solid reputation. Today it is considered one of the best young universities in the world. + homeUrl: https://www.maastrichtuniversity.nl + id: 283 + location: + countryCode: NL + countryName: Netherlands + name: Maastricht University + rorId: https://ror.org/02jz4aj89 + location: + countryCode: NL + countryName: Netherlands + mirId: MIR:00000711 + name: European Registry of Materials + official: true + providerCode: erm + resourceHomeUrl: https://nanocommons.github.io/identifiers/ + sampleId: ERM00000044 + urlPattern: https://nanocommons.github.io/identifiers/registry#{$id} + sampleId: ERM00000044 + - created: 2019-09-05T11:46:36.162+0000 + deprecated: false + deprecationDate: + description: ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API. + id: 1977 + mirId: MIR:00000770 + modified: 2019-09-05T11:46:36.162+0000 + name: ClassyFire + namespaceEmbeddedInLui: false + pattern: ^C[0-9]{7}$ + prefix: classyfire + resources: + - deprecated: false + deprecationDate: + description: Dr. David Wishart (PhD Yale, 1991) is a Professor in the Departments of Biological Sciences and Computing Science at the University of Alberta. He is also a senior research officer and the director of the Nano Life Science program at the NRCā€™s National Institute for Nanotechnology (NINT). 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Some of his lab's most significant contributions have been in the area of protein chemical shift analysis and the prediction of protein structure. + homeUrl: http://www.wishartlab.com/ + id: 1976 + location: + countryCode: CA + countryName: Canada + name: The Wishart Research Group, University of Alberta, Edmonton, Alberta, Canada + rorId: + location: + countryCode: CA + countryName: Canada + mirId: MIR:00000710 + name: The Wishart Research Group, University of Alberta, Edmonton, Alberta, Canada + official: true + providerCode: classyfire + resourceHomeUrl: http://classyfire.wishartlab.com/ + sampleId: C0004828 + urlPattern: http://classyfire.wishartlab.com/tax_nodes/{$id} + sampleId: C0004828 + - created: 2019-09-10T09:27:59.693+0000 + deprecated: false + deprecationDate: + description: "'ocid' stands for \"Ontology Concept Identifiers\" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology." + id: 1989 + mirId: MIR:00000738 + modified: 2019-09-10T09:27:59.693+0000 + name: Ontology Concept Identifiers + namespaceEmbeddedInLui: true + pattern: ocid:[0-9]{12} + prefix: ocid + resources: + - deprecated: false + deprecationDate: + description: SciWalker is an open access ontology based search tool for annotated data and extracted knowledge from scientific databases, patents and scientific documents. + id: 1990 + institution: + description: OntoChem develops and uses ontologies and semantic NLP software to annotate, analyze, extract and predict knowledge from scientific databases, patents, scientific articles or general private documents. + homeUrl: https://www.ontochem.com + id: 1988 + location: + countryCode: DE + countryName: Germany + name: OntoChem GmbH + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00000706 + name: SciWalker Open Data + official: true + providerCode: oc + resourceHomeUrl: https://www.sciwalker.com + sampleId: '190000021540' + urlPattern: https://www.sciwalker.com/sciwalker/faces/ociddata.xhtml?ocid={$id} + sampleId: '190000021540' + - created: 2019-09-10T10:50:49.547+0000 + deprecated: false + deprecationDate: + description: MarFun is manually curated database for marine fungi which is a part of the MAR databases. + id: 1997 + mirId: MIR:00000729 + modified: 2019-09-10T10:50:49.547+0000 + name: MarFun + namespaceEmbeddedInLui: false + pattern: ^MMP\d+.\d+$ + prefix: mmp.fun + resources: + - deprecated: false + deprecationDate: + description: MarFun through SfB + id: 1998 + institution: + description: The Centre for bioinformatics at UiT is a part of ELIXIR Norway dedicated to services. + homeUrl: https://uit.no + id: 1996 + location: + countryCode: NO + countryName: Norway + name: Centre for bioinformatics (SfB), UiT The Arctic university of Norway + rorId: + location: + countryCode: NO + countryName: Norway + mirId: MIR:00000713 + name: MarFun through SfB + official: true + providerCode: mmp + resourceHomeUrl: https://mmp.sfb.uit.no/databases/marfun + sampleId: MMP3888430 + urlPattern: https://mmp.sfb.uit.no/databases/marfun/#/records/{$id} + sampleId: MMP3888430 + - created: 2019-09-10T12:51:24.637+0000 + deprecated: false + deprecationDate: + description: E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments. + id: 2003 + mirId: MIR:00000760 + modified: 2019-09-10T12:51:24.637+0000 + name: E-cyanobacterium Experimental Data + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: ecyano.experiment + resources: + - deprecated: false + deprecationDate: + description: E-cyanobacterium is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction ā€” as biochemical reaction networks or ordinary differential equations. It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references wet-lab experiments. + id: 2004 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1629 + location: + countryCode: CZ + countryName: Czech Republic + name: Systems Biology Laboratory, Faculty of Informatics, Masaryk University Brno + rorId: + location: + countryCode: CZ + countryName: Czech Republic + mirId: MIR:00000754 + name: E-cyanobacterium + official: true + providerCode: ecyano + resourceHomeUrl: https://www.e-cyanobacterium.org/experiments-repository/ + sampleId: '18' + urlPattern: https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id={$id} + sampleId: '18' + - created: 2019-09-24T11:03:08.927+0000 + deprecated: false + deprecationDate: + description: DOULIX lab-tested standard biological parts, in this case, full length constructs. + id: 2022 + mirId: MIR:00000742 + modified: 2019-09-24T11:03:08.927+0000 + name: Circular double stranded DNA sequences composed + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9]{6,7}$ + prefix: dlxc + resources: + - deprecated: false + deprecationDate: + description: Doulix DNA repository provides a FAIR-compliant database of DNA sequences for synthetic biology. Doulix allows user to retrieve, inspect and manipulate DNA sequences while ensuring data traceability and integrity. + id: 2023 + institution: + description: 'Double Helix Technologies (DOULIX) is currently an operative unit of Explora Biotech (https://www.explora-biotech). ' + homeUrl: https://doulix.com + id: 2021 + location: + countryCode: IT + countryName: Italy + name: Double Helix Technologies (DOULIX) + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00000734 + name: Doulix DNA repository + official: true + providerCode: dlxc + resourceHomeUrl: https://doulix.com + sampleId: M77F7JM + urlPattern: https://doulix.com/constructs/{$id}/ + sampleId: M77F7JM + - created: 2019-10-01T11:40:36.666+0000 + deprecated: false + deprecationDate: + description: DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences. + id: 2026 + mirId: MIR:00000747 + modified: 2019-10-01T11:40:36.666+0000 + name: Linear double stranded DNA sequences + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9]{6,7}$ + prefix: dlxb + resources: + - deprecated: false + deprecationDate: + description: Doulix DNA repository provides a FAIR-compliant database of DNA sequences for synthetic biology. Doulix allows user to retrieve, inspect and manipulate DNA sequences while ensuring data traceability and integrity. + id: 2027 + institution: + description: 'Double Helix Technologies (DOULIX) is currently an operative unit of Explora Biotech (https://www.explora-biotech.com). ' + homeUrl: https://doulix.com + id: 2025 + location: + countryCode: IT + countryName: Italy + name: Doulix Helix Technologies (DOULIX) + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00000717 + name: Doulix DNA repository + official: true + providerCode: dlxb + resourceHomeUrl: https://doulix.com + sampleId: 6VDC956 + urlPattern: https://doulix.com/biomodules/{$id}/ + sampleId: 6VDC956 + - created: 2019-06-11T14:18:04.976+0000 + deprecated: false + deprecationDate: + description: The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB. + id: 1729 + mirId: MIR:00000623 + modified: 2019-10-01T11:46:06.302+0000 + name: CAMEO + namespaceEmbeddedInLui: false + pattern: ^[0-9\-_]+$ + prefix: cameo + resources: + - deprecated: false + deprecationDate: + description: CAMEO + id: 1731 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100827 + name: CAMEO + official: false + providerCode: sib + resourceHomeUrl: https://cameo3d.org + sampleId: 2019-08-03_00000089_1 + urlPattern: https://www.cameo3d.org/sp/targets/target/{$id} + sampleId: 2019-08-03_00000089_1 + - created: 2019-09-19T13:46:35.999+0000 + deprecated: false + deprecationDate: + description: This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects. + id: 2013 + mirId: MIR:00000744 + modified: 2019-10-02T08:18:15.555+0000 + name: Neuroscience Multi-Omic BRAIN Initiative Data + namespaceEmbeddedInLui: false + pattern: '[a-z]{3}-[a-km-z0-9]{7}' + prefix: nemo + resources: + - deprecated: false + deprecationDate: + description: The Neuroscience Multi-Omic Archive (NeMO Archive) is a data repository specifically focused on the storage and dissemination of omic data generated from the BRAIN Initiative and related brain research projects. + id: 2014 + institution: + description: Formed in May 2007, the Institute for Genome Sciences (IGS) is part of the University of Maryland School of Medicine and is on the University of Maryland Baltimore campus. Members of the IGS team have helped revolutionize genomic discoveries in medicine, agriculture, environmental science and biodefense. + homeUrl: http://www.igs.umaryland.edu + id: 2012 + location: + countryCode: US + countryName: United States + name: The Institute for Genome Sciences + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00000790 + name: The NeMO Archive + official: true + providerCode: igs + resourceHomeUrl: https://www.nemoarchive.org + sampleId: smp-m3w9hbe + urlPattern: https://assets.nemoarchive.org/{$id} + sampleId: smp-m3w9hbe + - created: 2019-11-07T10:59:42.032+0000 + deprecated: false + deprecationDate: + description: The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways. + id: 2037 + mirId: MIR:00000726 + modified: 2019-11-07T10:59:42.032+0000 + name: Signaling Pathways Project + namespaceEmbeddedInLui: false + pattern: ^10.\w{4}/\w{10}$ + prefix: spp + resources: + - deprecated: false + deprecationDate: + description: The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways. + id: 2038 + institution: + description: Baylor College of Medicine is a health sciences university that creates knowledge and applies science and discoveries to further education, healthcare and community service locally and globally. + homeUrl: https://www.bcm.edu + id: 485 + location: + countryCode: US + countryName: United States + name: Baylor College of Medicine + rorId: https://ror.org/02pttbw34 + location: + countryCode: US + countryName: United States + mirId: MIR:00000730 + name: Signaling Pathways Project + official: true + providerCode: spp + resourceHomeUrl: https://www.signalingpathways.org/index.jsf + sampleId: 10.1621/vwN2g2HaX3 + urlPattern: https://www.signalingpathways.org/datasets/dataset.jsf?doi={$id} + sampleId: 10.1621/vwN2g2HaX3 + - created: 2019-12-09T15:05:02.665+0000 + deprecated: false + deprecationDate: + description: BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy. + id: 2055 + mirId: MIR:00000716 + modified: 2019-12-09T15:05:02.665+0000 + name: Biological Magnetic Resonance Data Bank + namespaceEmbeddedInLui: false + pattern: ^(bmr|bmse|bmst)?[0-9]{1,6}$ + prefix: bmrb + resources: + - deprecated: false + deprecationDate: + description: BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy. + id: 2056 + institution: + description: >- + The University of Wisconsinā€“Madison is a public research + university in Madison, Wisconsin. Founded when Wisconsin achieved + statehood in 1848, UWā€“Madison is the official state university of + Wisconsin, and the flagship campus of the University of Wisconsin + System. + + It was the first public university established in Wisconsin and remains the oldest and largest public university in the state. It became a land-grant institution in 1866. + + The 933-acre (378 ha) main campus, located on the shores of Lake Mendota, includes four National Historic Landmarks. + + The University also owns and operates a historic 1,200-acre (486 ha) arboretum established in 1932, located 4 miles (6.4 km) south of the main campus. + homeUrl: https://www.wisc.edu/ + id: 2054 + location: + countryCode: US + countryName: United States + name: University of Wisconsin-Madison + rorId: https://ror.org/01y2jtd41 + location: + countryCode: US + countryName: United States + mirId: MIR:00000735 + name: Biological Magnetic Resonance Data Bank + official: true + providerCode: bmrb + resourceHomeUrl: http://www.bmrb.wisc.edu/ + sampleId: '15000' + urlPattern: http://rest.bmrb.wisc.edu/bmrb/{$id}/html + sampleId: '15000' + - created: 2019-12-09T15:18:31.130+0000 + deprecated: false + deprecationDate: + description: DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature. + id: 2061 + mirId: MIR:00000745 + modified: 2019-12-09T15:18:31.130+0000 + name: DisProt region + namespaceEmbeddedInLui: false + pattern: ^DP\d{5}r\d{3}$ + prefix: disprot.region + resources: + - deprecated: false + deprecationDate: + description: DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature. + id: 2062 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1769 + location: + countryCode: IT + countryName: Italy + name: University of Padua + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00000756 + name: DisProt region + official: true + providerCode: disprot.region + resourceHomeUrl: https://www.disprot.org + sampleId: DP00086r013 + urlPattern: https://www.disprot.org/{$id} + sampleId: DP00086r013 + - created: 2020-01-24T13:57:43.399+0000 + deprecated: false + deprecationDate: + description: "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. " + id: 2072 + mirId: MIR:00000723 + modified: 2020-01-24T13:57:43.399+0000 + name: VegBank + namespaceEmbeddedInLui: false + pattern: ^VB\.[A-Za-z][A-Za-z]\..*$ + prefix: vegbank + resources: + - deprecated: false + deprecationDate: + description: VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. + id: 2073 + institution: + description: NCEAS works to accelerate scientific discoveries that will enhance our understanding of the world and benefit people and nature, as well as to transform the scientific culture to be more open, efficient, and collaborative. + homeUrl: https://nceas.ucsb.edu/ + id: 2071 + location: + countryCode: US + countryName: United States + name: National Center for Ecological Analysis and Synthesis + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00000751 + name: VegBank + official: true + providerCode: vegbank + resourceHomeUrl: http://vegbank.org/ + sampleId: VB.Ob.3736.GRSM125 + urlPattern: http://vegbank.org/cite/{$id} + sampleId: VB.Ob.3736.GRSM125 + - created: 2020-02-25T11:14:38.686+0000 + deprecated: false + deprecationDate: + description: 'Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. ' + id: 2085 + mirId: MIR:00000707 + modified: 2020-02-28T10:24:36.137+0000 + name: MINID Test + namespaceEmbeddedInLui: false + pattern: '[A-Za-z0-9]+$' + prefix: minid.test + resources: + - deprecated: false + deprecationDate: + description: FAIR Research is a collaboration of the Informatics Systems Research Division at the Information Sciences Institute of University of Southern California and the Computational Systems Division at the University of Chicago. + id: 2086 + institution: + description: The University of Southern California is a leading private research university located in Los Angeles ā€” a global center for arts, technology and international business. It is home to the College of Letters, Arts and Sciences and 21 exceptional academic schools and units. USCā€™s Health Sciences campus houses renowned specialized care and research in cancer, stem cell and regenerative medicine, orthopedics and sports medicine. The university is the largest private sector employer in the city of Los Angeles, responsible for $8 billion annually in economic activity in the region. + homeUrl: https://www.usc.edu/ + id: 1781 + location: + countryCode: US + countryName: United States + name: University of Southern California + rorId: https://ror.org/03taz7m60 + location: + countryCode: US + countryName: United States + mirId: MIR:00000724 + name: FAIR Research + official: true + providerCode: fair + resourceHomeUrl: https://fair-research.org + sampleId: 3SBPLMKKVEVR + urlPattern: https://hdl.handle.net/hdl:20.500.12633/{$id} + sampleId: 3SBPLMKKVEVR + - created: 2020-03-02T17:27:03.688+0000 + deprecated: false + deprecationDate: + description: Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created ā€œreference image" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools. + id: 2108 + mirId: MIR:00000743 + modified: 2020-03-02T17:27:03.688+0000 + name: Image Data Resource + namespaceEmbeddedInLui: false + pattern: ^[0-9]{4}$ + prefix: idr + resources: + - deprecated: false + deprecationDate: + description: OME is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data. + id: 2109 + institution: + description: The University of Dundee is a public research university in Dundee, Scotland. Founded in 1881 the institution was, for most of its early existence, a constituent college of the University of St Andrews alongside United College and St Mary's College located in the town of St Andrews itself. Following significant expansion, the University of Dundee gained independent university status in 1967 while retaining much of its ancient heritage and governance structure. + homeUrl: https://www.dundee.ac.uk/ + id: 2107 + location: + countryCode: GB + countryName: United Kingdom + name: University of Dundee + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00000705 + name: Open Microscopy Environment + official: true + providerCode: ome + resourceHomeUrl: https://idr.openmicroscopy.org + sampleId: '0001' + urlPattern: https://idr.openmicroscopy.org/search/?query=Name:idr{$id} + sampleId: '0001' + - created: 2020-02-28T10:48:52.126+0000 + deprecated: false + deprecationDate: + description: The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes. + id: 2096 + mirId: MIR:00000736 + modified: 2020-03-03T05:45:40.200+0000 + name: TranSyT + namespaceEmbeddedInLui: false + pattern: T[A-Z]\d{7} + prefix: transyt + resources: + - deprecated: false + deprecationDate: + description: The BIOSYSTEMS Research Group is a research group at CEB, using competences in systems biotechnology and bioengineering to foster the development of a knowledge-based bio-economy, leading to new added-value products and processes. + id: 2097 + institution: + description: 'The Centre of Biological Engineering (CEB), designated as ā€œExcellentā€ by FCT, is a research unit located at University of Minho (ROR:037wpkx04) that develops its activities on interdisciplinary thrust areas covering molecular, cellular and process scales, corresponding to 4 thematic strands: Industrial, Food, Environmental, and Health Biotechnology and Bioengineering.' + homeUrl: https://www.ceb.uminho.pt + id: 2095 + location: + countryCode: PT + countryName: Portugal + name: Centre of Biological Engineering + rorId: + location: + countryCode: PT + countryName: Portugal + mirId: MIR:00000731 + name: BIOSYSTEMS Research Group + official: true + providerCode: transyt + resourceHomeUrl: https://www.bio.di.uminho.pt/ + sampleId: TR0000001 + urlPattern: https://transyt.bio.di.uminho.pt/reactions/{$id} + sampleId: TR0000001 + - created: 2019-06-11T14:18:01.236+0000 + deprecated: false + deprecationDate: + description: The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage. + id: 1685 + mirId: MIR:00000607 + modified: 2020-03-31T12:32:16.941+0000 + name: Genome assembly database + namespaceEmbeddedInLui: false + pattern: ^GC[AF]_[0-9]{9}\.[0-9]+$ + prefix: insdc.gca + resources: + - deprecated: false + deprecationDate: + description: Genome assembly database through ENA + id: 1686 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100810 + name: Genome assembly database through ENA + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.ebi.ac.uk/ena/browse/genome-assembly-database + sampleId: GCA_000155495.1 + urlPattern: https://www.ebi.ac.uk/ena/data/view/{$id} + - deprecated: false + deprecationDate: + description: Genome assembly database NCBI + id: 1687 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100811 + name: Genome assembly database NCBI + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/assembly/ + sampleId: GCA_000155495.1 + urlPattern: https://www.ncbi.nlm.nih.gov/assembly/{$id} + sampleId: GCA_000155495.1 + - created: 2019-06-11T14:17:46.314+0000 + deprecated: false + deprecationDate: + description: SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions. + id: 1539 + mirId: MIR:00000550 + modified: 2020-05-01T09:59:44.482+0000 + name: SwissLipids + namespaceEmbeddedInLui: true + pattern: ^SLM:\d+$ + prefix: slm + resources: + - deprecated: false + deprecationDate: + description: SwissLipids at Swiss Institute of Bioinformatics + id: 1541 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100727 + name: SwissLipids at Swiss Institute of Bioinformatics + official: false + providerCode: sib + resourceHomeUrl: http://www.swisslipids.org/#/ + sampleId: '000048885' + urlPattern: http://www.swisslipids.org/#/entity/SLM:{$id}/ + sampleId: '000048885' + - created: 2020-05-12T14:08:31.024+0000 + deprecated: false + deprecationDate: + description: The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee. + id: 2222 + mirId: MIR:00000765 + modified: 2020-05-12T14:08:31.024+0000 + name: VGNC + namespaceEmbeddedInLui: false + pattern: ^((VGNC|vgnc):)?\d{1,9}$ + prefix: vgnc + resources: + - deprecated: false + deprecationDate: + description: 'The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee. ' + id: 2223 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00000752 + name: VGNC + official: true + providerCode: vgnc + resourceHomeUrl: https://vertebrate.genenames.org + sampleId: VGNC:3792 + urlPattern: https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/{$id} + sampleId: VGNC:3792 + - created: 2020-05-22T09:04:15.866+0000 + deprecated: false + deprecationDate: + description: Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms. + id: 2248 + mirId: MIR:00000718 + modified: 2020-05-22T09:04:15.866+0000 + name: Datanator Metabolite + namespaceEmbeddedInLui: false + pattern: ^[A-Z\-]+$ + prefix: datanator.metabolite + resources: + - deprecated: false + deprecationDate: + description: The Icahn School of Medicine at Mount Sinai is an international leader in medical and scientific training, biomedical research, and patient care. It is the medical school for the Mount Sinai Health System, which includes eight hospital campuses, and has more than 5,000 faculty and nearly 2,000 students, residents and fellows. + id: 2249 + institution: + description: The Icahn School of Medicine at Mount Sinai is an international leader in medical and scientific training, biomedical research, and patient care. It is the medical school for the Mount Sinai Health System, which includes eight hospital campuses, and has more than 5,000 faculty and nearly 2,000 students, residents and fellows. + homeUrl: https://icahn.mssm.edu/ + id: 2247 + location: + countryCode: US + countryName: United States + name: Icahn School of Medicine at Mount Sinai + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00000772 + name: Icahn School of Medicine at Mount Sinai + official: true + providerCode: icahn + resourceHomeUrl: https://datanator.info/ + sampleId: OUYCCCASQSFEME-MRVPVSSYSA-N + urlPattern: https://www.datanator.info/metabolite/{$id} + sampleId: OUYCCCASQSFEME-MRVPVSSYSA-N + - created: 2019-06-11T14:17:48.275+0000 + deprecated: false + deprecationDate: + description: "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools.\r\nThe initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch." + id: 1559 + mirId: MIR:00000558 + modified: 2020-03-11T14:52:15.242+0000 + name: RRID + namespaceEmbeddedInLui: true + pattern: ^RRID:[a-zA-Z]+.+$ + prefix: rrid + resources: + - deprecated: false + deprecationDate: + description: RRID at SciCrunch + id: 1560 + institution: + description: >- + is a public research university in San Diego, California. + + Established in 1960 near the pre-existing Scripps Institution of Oceanography, UC San Diego is the seventh-oldest of the 10 University of California campuses and offers over 200 undergraduate and graduate degree programs, enrolling approximately 30,000 undergraduate and 8,500 graduate students. + homeUrl: https://ucsd.edu/ + id: 190 + location: + countryCode: US + countryName: United States + name: University of California, San Diego + rorId: https://ror.org/0168r3w48 + location: + countryCode: US + countryName: United States + mirId: MIR:00100735 + name: RRID at SciCrunch + official: false + providerCode: ucsd + resourceHomeUrl: https://scicrunch.org/resolver + sampleId: AB_262044 + urlPattern: https://scicrunch.org/resolver/RRID:{$id} + sampleId: AB_262044 + - created: 2019-06-11T14:16:11.083+0000 + deprecated: false + deprecationDate: + description: The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies. + id: 447 + mirId: MIR:00000141 + modified: 2020-03-16T08:35:08.949+0000 + name: Protein Ontology + namespaceEmbeddedInLui: true + pattern: ^PR:P?\d+$ + prefix: pr + resources: + - deprecated: false + deprecationDate: + description: Protein Ontology at Georgetown + id: 448 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 173 + location: + countryCode: US + countryName: United States + name: Georgetown University Medical Center, Washington + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100184 + name: Protein Ontology at Georgetown + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://proconsortium.org/ + sampleId: '000000024' + urlPattern: https://proconsortium.org/app/entry/PR:{$id} + - deprecated: false + deprecationDate: + description: Protein Ontology through BioPortal + id: 449 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100240 + name: Protein Ontology through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/PR + sampleId: '000000024' + urlPattern: http://purl.bioontology.org/ontology/PR/PR:{$id} + - deprecated: false + deprecationDate: + description: Protein Ontology through OLS + id: 450 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100755 + name: Protein Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/pr + sampleId: '000000024' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/pr/terms?obo_id=PR:{$id} + sampleId: '000000024' + - created: 2020-03-17T08:03:56.077+0000 + deprecated: false + deprecationDate: + description: 'The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.' + id: 2129 + mirId: MIR:00000733 + modified: 2020-03-17T08:03:56.077+0000 + name: Genomes OnLine Database (GOLD) + namespaceEmbeddedInLui: false + pattern: ^[A-Z][a-z][0-9]+$ + prefix: gold + resources: + - deprecated: false + deprecationDate: + description: >- + The Genomes OnLine Database (GOLD) is a centralized resource for + cataloguing genome and metagenome sequencing projects from around + the world, along with their associated metadata. Information in GOLD + is organized into four levels: Study, Biosample/Organism, Sequencing + Project and Analysis Project. + + Study is an umbrella Project that broadly defines the overall goal of a research proposal. It consists of sequencing projects along with corresponding organism or Biosample information as well as any analysis done on the sequencing projects. + + E.g., Gs0016050: Human Microbiome Project (HMP), Gs0000008: A Genomic Encyclopedia of Bacteria and Archaea (GEBA) study. + + Biosample is the description of the environment from where the DNA/RNA sample was collected. Currently GOLD Biosample entities are defined for all metagenome and metatranscriptomes projects, i.e. for non-isolate genomes. E.g., Gb0055733 + + Organism is an individual living thing. It can be a bacterium, plant, fungus etc. In GOLD, all isolate or single cell genome sequencing projects are associated with an organism. Additionally, GOLD Organisms are also created for genomes assembled from metagenome sequences(MAGs). E.g., Go0003442 + + Sequencing Project represents the procedures undertaken for generating sequencing output from an individual Organism or Biosample. An individual genome project may be composed of more than one sequencing reactions and/or sequencing technologies. A Sequencing Project may be an isolate genome, or a metagenome, transcriptome, or metatranscriptome etc. + + E.g., Gp0003442 + + Analysis Project represents the computational processing of sequencing data generated by a sequencing project. It describes how the assembly and annotation of a Sequencing Project were performed. + + E.g., Ga0027275 + id: 2130 + institution: + description: The mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence Berkeley National Laboratory (Berkeley Lab) and part of the Biosciences Area, is to advance genomics in support of the DOE missions related to clean energy generation and environmental characterization and cleanup. + homeUrl: https://gold.jgi.doe.gov/ + id: 2128 + location: + countryCode: US + countryName: United States + name: Joint Genome Institute + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00000757 + name: Genomes OnLine Database (GOLD) + official: true + providerCode: jgi + resourceHomeUrl: https://gold.jgi.doe.gov/ + sampleId: Gs0000008 + urlPattern: https://gold.jgi.doe.gov/resolver?id={$id} + sampleId: Gs0000008 + - created: 2020-03-17T12:41:40.413+0000 + deprecated: false + deprecationDate: + description: NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. + id: 2140 + mirId: MIR:00000748 + modified: 2020-03-17T12:43:18.460+0000 + name: NMR Shift Database + namespaceEmbeddedInLui: false + pattern: ^[0-9]+$ + prefix: nmrshiftdb2 + resources: + - deprecated: false + deprecationDate: + description: NMR database (web database) for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. Last not least, it features peer-reviewed submission of datasets by its users. The NMRShiftDB software is open source, the data is published under an open content license. + id: 2141 + institution: + description: The University of Cologne is one of the oldest and largest universities in Europe. Due to its outstanding scientific achievements and the high quality and diversity of its degree programmes, it enjoys an excellent international reputation. + homeUrl: https://www.portal.uni-koeln.de/uoc_home.html?&L=1 + id: 2139 + location: + countryCode: DE + countryName: Germany + name: University of Cologne + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00000719 + name: NMRShiftDB + official: true + providerCode: uoc + resourceHomeUrl: https://nmrshiftdb.nmr.uni-koeln.de + sampleId: '234' + urlPattern: https://nmrshiftdb.nmr.uni-koeln.de/molecule/{$id} + sampleId: '234' + - created: 2019-06-11T14:18:10.091+0000 + deprecated: false + deprecationDate: + description: Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. + id: 1789 + mirId: MIR:00000645 + modified: 2020-03-20T09:37:38.029+0000 + name: Minimal Viable Identifier + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9]+$ + prefix: minid + resources: + - deprecated: false + deprecationDate: + description: FAIR Research is a collaboration of the Informatics Systems Research Division at the Information Sciences Institute of University of Southern California and the Computational Systems Division at the University of Chicago. + id: 1791 + institution: + description: The University of Southern California is a leading private research university located in Los Angeles ā€” a global center for arts, technology and international business. It is home to the College of Letters, Arts and Sciences and 21 exceptional academic schools and units. USCā€™s Health Sciences campus houses renowned specialized care and research in cancer, stem cell and regenerative medicine, orthopedics and sports medicine. The university is the largest private sector employer in the city of Los Angeles, responsible for $8 billion annually in economic activity in the region. + homeUrl: https://www.usc.edu/ + id: 1781 + location: + countryCode: US + countryName: United States + name: University of Southern California + rorId: https://ror.org/03taz7m60 + location: + countryCode: US + countryName: United States + mirId: MIR:00100850 + name: FAIR Research + official: false + providerCode: fair + resourceHomeUrl: https://fair-research.org + sampleId: r8059v + urlPattern: https://hdl.handle.net/hdl:20.500.12582/{$id} + sampleId: b97957 + - created: 2020-03-20T12:58:53.045+0000 + deprecated: false + deprecationDate: + description: SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome. + id: 2152 + mirId: MIR:00000766 + modified: 2020-03-20T12:58:53.045+0000 + name: SNP2TFBS + namespaceEmbeddedInLui: false + pattern: ^rs[0-9]+$ + prefix: snp2tfbs + resources: + - deprecated: false + deprecationDate: + description: SNP2TFBS is a Web interface aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome. + id: 2153 + institution: + description: SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide. + homeUrl: https://www.sib.swiss + id: 1730 + location: + countryCode: CH + countryName: Switzerland + name: SIB Swiss Institute of Bioinformatics + rorId: https://ror.org/002n09z45 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00000737 + name: SNP2TFBS + official: true + providerCode: sib + resourceHomeUrl: https://ccg.epfl.ch/snp2tfbs/ + sampleId: rs11603840 + urlPattern: https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid={$id} + sampleId: rs11603840 + - created: 2020-03-20T15:04:54.734+0000 + deprecated: false + deprecationDate: + description: A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations. + id: 2160 + mirId: MIR:00000782 + modified: 2020-03-20T15:04:54.734+0000 + name: BioLink Model + namespaceEmbeddedInLui: false + pattern: ^\S+$ + prefix: biolink + resources: + - deprecated: false + deprecationDate: + description: This resource is not backed by a physical institution. The resource is managed and deployed on GitHub, and is maintained by a broad community of develops + id: 2161 + institution: + description: This resource is not backed by a physical institution. The resource is managed and deployed on GitHub, and is maintained by a broad community of develops + homeUrl: https://biolink.github.io/biolink-model + id: 2159 + location: + countryCode: US + countryName: United States + name: BioLink GitHub Organization + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00000778 + name: BioLink GitHub Organization + official: true + providerCode: biolinkgithub + resourceHomeUrl: https://biolink.github.io/biolink-model + sampleId: Gene + urlPattern: https://w3id.org/biolink/vocab/{$id} + sampleId: Gene + - created: 2020-03-24T05:11:19.658+0000 + deprecated: false + deprecationDate: + description: >- + DANDI works with BICCN and other BRAIN Initiative awardees to curate + data using community data standards such as NWB and BIDS, and to make + data and software for cellular neurophysiology FAIR (Findable, + Accessible, Interoperable, and Reusable). + + DANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data. + + These data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders. + id: 2168 + mirId: MIR:00000786 + modified: 2020-03-24T05:11:19.658+0000 + name: 'DANDI: Distributed Archives for Neurophysiology Data Integration' + namespaceEmbeddedInLui: false + pattern: ^\d{6}(/\d+\.\d+\.\d+)?$ + prefix: dandi + resources: + - deprecated: false + deprecationDate: + description: 'DANDI is a Web platform for scientists to share, collaborate, and process data from cellular neurophysiology experiments. DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable). DANDI will store electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data. DANDI will provide: 1) A cloud platform for neurophysiology data storage for the purposes of collaboration and dissemination of data; 2) Easy to use tools for neurophysiology data submission, visualization, and access in the archive; and 3) Standardized applications for data ingestion, visualization and processing, which facilitate adoption of NWB and other standards. These data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders.' + id: 2169 + institution: + description: Founded to accelerate the nationā€™s industrial revolution, MIT is profoundly American. With ingenuity and drive, our graduates have invented fundamental technologies, launched new industries, and created millions of American jobs. At the same time, and without the slightest sense of contradiction, MIT is profoundly global(opens in new window). Our community gains tremendous strength as a magnet for talent from around the world. Through teaching, research, and innovation, MITā€™s exceptional community pursues its mission of service to the nation and the world. + homeUrl: http://web.mit.edu/ + id: 2167 + location: + countryCode: US + countryName: United States + name: Massachusetts Institute of Technology + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00000750 + name: 'DANDI: Distributed Archives for Neurophysiology Data Integration' + official: true + providerCode: dandi + resourceHomeUrl: https://dandiarchive.org/ + sampleId: '000017' + urlPattern: https://dandiarchive.org/dandiset/{$id} + sampleId: '000017' + - created: 2020-03-24T06:40:28.546+0000 + deprecated: false + deprecationDate: + description: Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB. + id: 2184 + mirId: MIR:00000762 + modified: 2020-03-24T06:40:28.546+0000 + name: RAP-DB Transcript + namespaceEmbeddedInLui: false + pattern: ^Os\S+t\d{7}-\d{2}$ + prefix: rapdb.transcript + resources: + - deprecated: false + deprecationDate: + description: The Rice Annotation Project (RAP) was conceptualized in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project with the aim of providing the scientific community with an accurate and timely annotation of the rice genome sequence. + id: 2185 + institution: + description: The National Agriculture and Food Research Organization or NARO is the core institute in Japan for conducting research and development on agriculture and food. + homeUrl: http://www.naro.affrc.go.jp/english/index.html + id: 2183 + location: + countryCode: JP + countryName: Japan + name: The National Agriculture and Food Research Organization (NARO) + rorId: https://ror.org/023v4bd62 + location: + countryCode: JP + countryName: Japan + mirId: MIR:00000773 + name: RAP-DB + official: true + providerCode: rapdb + resourceHomeUrl: https://rapdb.dna.affrc.go.jp/ + sampleId: Os01t0883800-02 + urlPattern: https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name={$id} + sampleId: Os01t0883800-02 + - created: 2020-03-24T06:41:41.433+0000 + deprecated: false + deprecationDate: + description: Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB. + id: 2187 + mirId: MIR:00000702 + modified: 2020-03-24T06:41:41.433+0000 + name: RAP-DB Locus + namespaceEmbeddedInLui: false + pattern: ^Os\S+g\d{7}$ + prefix: rapdb.locus + resources: + - deprecated: false + deprecationDate: + description: The Rice Annotation Project (RAP) was conceptualized in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project with the aim of providing the scientific community with an accurate and timely annotation of the rice genome sequence. + id: 2188 + institution: + description: The National Agriculture and Food Research Organization or NARO is the core institute in Japan for conducting research and development on agriculture and food. + homeUrl: http://www.naro.affrc.go.jp/english/index.html + id: 2183 + location: + countryCode: JP + countryName: Japan + name: The National Agriculture and Food Research Organization (NARO) + rorId: https://ror.org/023v4bd62 + location: + countryCode: JP + countryName: Japan + mirId: MIR:00000741 + name: RAP-DB, Rice Annotation Project Database + official: true + providerCode: rapdb + resourceHomeUrl: https://rapdb.dna.affrc.go.jp/ + sampleId: Os01g0883800 + urlPattern: https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name={$id} + sampleId: Os01g0883800 + - created: 2020-03-24T07:50:16.285+0000 + deprecated: false + deprecationDate: + description: enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products. + id: 2198 + mirId: MIR:00000727 + modified: 2020-03-24T07:50:16.285+0000 + name: enviPath + namespaceEmbeddedInLui: false + pattern: ^[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}\/[\w-]+\/[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}$ + prefix: envipath + resources: + - deprecated: false + deprecationDate: + description: enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products. + id: 2199 + institution: + description: We currently have no more details on this institution / organization, for more information, please see https://envipath.com/imprint/ + homeUrl: https://envipath.org/ + id: 2197 + location: + countryCode: DE + countryName: Germany + name: enviPath UG & Co. KG + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00000776 + name: enviPath + official: true + providerCode: envipathug + resourceHomeUrl: https://envipath.org/ + sampleId: 32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea + urlPattern: https://envipath.org/package/{$id} + sampleId: 32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea + - created: 2019-06-11T14:17:12.564+0000 + deprecated: false + deprecationDate: + description: >- + - DEPRECATION NOTE - + + Please, keep in mind that this namespace has been superseeded by ā€˜goldā€™ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ā€˜goldā€™ namespace. + + + The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples. + id: 1167 + mirId: MIR:00000402 + modified: 2020-03-26T09:38:38.398+0000 + name: GOLD metadata + namespaceEmbeddedInLui: false + pattern: ^Gm\d+$ + prefix: gold.meta + resources: + - deprecated: false + deprecationDate: + description: GOLD metadata at Department of Energy Joint Genome Institute + id: 1168 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1165 + location: + countryCode: US + countryName: United States + name: Department of Energy Joint Genome Institute, Microbial Genomics and Metagenomics Program, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100522 + name: GOLD metadata at Department of Energy Joint Genome Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.genomesonline.org/cgi-bin/GOLD/index.cgi + sampleId: Gm00047 + urlPattern: http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp={$id} + sampleId: Gm00047 + - created: 2019-06-11T14:15:43.085+0000 + deprecated: false + deprecationDate: + description: The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products. + id: 153 + mirId: MIR:00000039 + modified: 2020-03-31T09:55:28.774+0000 + name: RefSeq + namespaceEmbeddedInLui: false + pattern: ^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+)|(NZ\_[A-Z]{2,4}\d+))(\.\d+)?$ + prefix: refseq + resources: + - deprecated: false + deprecationDate: + description: The NCBI Reference Sequence database + id: 155 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00100067 + name: The NCBI Reference Sequence database + official: false + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/projects/RefSeq/ + sampleId: NP_012345 + urlPattern: https://www.ncbi.nlm.nih.gov/protein/{$id} + sampleId: NP_012345 + - created: 2019-06-11T14:17:12.343+0000 + deprecated: false + deprecationDate: + description: >- + - DEPRECATION NOTE - + + Please, keep in mind that this namespace has been superseeded by ā€˜goldā€™ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ā€˜goldā€™ namespace. + + + The GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes. + id: 1164 + mirId: MIR:00000401 + modified: 2020-03-26T09:37:26.767+0000 + name: GOLD genome + namespaceEmbeddedInLui: false + pattern: ^(Gi|Gc)\d+$ + prefix: gold.genome + resources: + - deprecated: false + deprecationDate: + description: GOLD genome at Department of Energy Joint Genome Institute + id: 1166 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1165 + location: + countryCode: US + countryName: United States + name: Department of Energy Joint Genome Institute, Microbial Genomics and Metagenomics Program, California + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100521 + name: GOLD genome at Department of Energy Joint Genome Institute + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.genomesonline.org/cgi-bin/GOLD/index.cgi + sampleId: Gi07796 + urlPattern: http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp={$id} + sampleId: Gi07796 + - created: 2019-06-11T14:16:41.635+0000 + deprecated: false + deprecationDate: + description: |- + KNApSAcK provides information on metabolites and the + taxonomic class with which they are associated. + id: 794 + mirId: MIR:00000271 + modified: 2020-04-22T09:28:07.963+0000 + name: KNApSAcK + namespaceEmbeddedInLui: false + pattern: ^C\d{8} + prefix: knapsack + resources: + - deprecated: false + deprecationDate: + description: KNApSAcK at NAIST + id: 796 + institution: + description: 'Nara Institute of Science and Technology (NAIST) is a Japanese national university located in Kansai Science City, a border region between Nara, Osaka, and Kyoto. Founded in 1991, NAIST consisted of graduate schools in three integrated areas: information science, biological sciences, and materials science.' + homeUrl: https://www.naist.jp/en/ + id: 795 + location: + countryCode: JP + countryName: Japan + name: Nara Institute of Science and Technology + rorId: https://ror.org/05bhada84 + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100350 + name: KNApSAcK at NAIST + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.knapsackfamily.com/KNApSAcK/ + sampleId: C00000001 + urlPattern: http://www.knapsackfamily.com/knapsack_core/information.php?word={$id} + sampleId: C00000001 + - created: 2020-04-22T09:46:18.729+0000 + deprecated: false + deprecationDate: + description: The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation. + id: 2215 + mirId: MIR:00000753 + modified: 2020-04-22T09:46:18.729+0000 + name: Polygenic Score Catalog + namespaceEmbeddedInLui: false + pattern: ^PGS[0-9]{6}$ + prefix: pgs + resources: + - deprecated: false + deprecationDate: + description: >- + The Polygenic Score (PGS) Catalog is an open database of PGS and the + relevant metadata required for accurate application and evaluation. + + + Developed in collaboration with the NHGRI-EBI GWAS Catalog and Health Data Research UK/ + id: 2216 + institution: + description: The University of Cambridge is a collegiate public research university in Cambridge, United Kingdom. Founded in 1209 and granted a royal charter by King Henry III in 1231, Cambridge is the second-oldest university in the English-speaking world and the world's fourth-oldest surviving university. + homeUrl: https://www.cam.ac.uk/ + id: 2214 + location: + countryCode: GB + countryName: United Kingdom + name: University of Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00000755 + name: PGS Catalog + official: true + providerCode: pgs + resourceHomeUrl: http://pgscatalog.org + sampleId: PGS000018 + urlPattern: https://www.pgscatalog.org/pgs/{$id}/ + sampleId: PGS000018 + - created: 2020-05-22T09:05:34.813+0000 + deprecated: false + deprecationDate: + description: Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms. + id: 2251 + mirId: MIR:00000720 + modified: 2020-05-22T09:05:34.813+0000 + name: Datanator Gene + namespaceEmbeddedInLui: false + pattern: ^K[0-9]+$ + prefix: datanator.gene + resources: + - deprecated: false + deprecationDate: + description: The Icahn School of Medicine at Mount Sinai is an international leader in medical and scientific training, biomedical research, and patient care. It is the medical school for the Mount Sinai Health System, which includes eight hospital campuses, and has more than 5,000 faculty and nearly 2,000 students, residents and fellows. + id: 2252 + institution: + description: The Icahn School of Medicine at Mount Sinai is an international leader in medical and scientific training, biomedical research, and patient care. It is the medical school for the Mount Sinai Health System, which includes eight hospital campuses, and has more than 5,000 faculty and nearly 2,000 students, residents and fellows. + homeUrl: https://icahn.mssm.edu/ + id: 2247 + location: + countryCode: US + countryName: United States + name: Icahn School of Medicine at Mount Sinai + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00000740 + name: Icahn School of Medicine at Mount Sinai + official: true + providerCode: icahn + resourceHomeUrl: https://datanator.info/ + sampleId: K00973 + urlPattern: https://www.datanator.info/gene/{$id} + sampleId: K00973 + - created: 2019-06-11T14:17:05.115+0000 + deprecated: false + deprecationDate: + description: A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI. + id: 1078 + mirId: MIR:00000376 + modified: 2020-05-22T10:35:39.544+0000 + name: Locus Reference Genomic + namespaceEmbeddedInLui: false + pattern: ^LRG_\d+$ + prefix: lrg + resources: + - deprecated: false + deprecationDate: + description: Locus Reference Genomic through Ensembl + id: 1082 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1081 + location: + countryCode: GB + countryName: United Kingdom + name: EnSembl, Sanger Institute and European Bioinformatics Institute, Hinxton, Cambridge + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100627 + name: Locus Reference Genomic through Ensembl + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.ensembl.org/ + sampleId: LRG_1 + urlPattern: http://www.ensembl.org/Homo_sapiens/LRG/Summary?lrg={$id} + - deprecated: false + deprecationDate: + description: Locus Reference Genomic through Ensembl mirror (asia) + id: 1083 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1081 + location: + countryCode: GB + countryName: United Kingdom + name: EnSembl, Sanger Institute and European Bioinformatics Institute, Hinxton, Cambridge + rorId: + location: + countryCode: SG + countryName: Singapore + mirId: MIR:00100629 + name: Locus Reference Genomic through Ensembl mirror (asia) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://asia.ensembl.org/ + sampleId: LRG_1 + urlPattern: http://asia.ensembl.org/Homo_sapiens/LRG/Summary?lrg={$id} + - deprecated: false + deprecationDate: + description: Locus Reference Genomic through Ensembl mirror (US west) + id: 1084 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1081 + location: + countryCode: GB + countryName: United Kingdom + name: EnSembl, Sanger Institute and European Bioinformatics Institute, Hinxton, Cambridge + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100630 + name: Locus Reference Genomic through Ensembl mirror (US west) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://uswest.ensembl.org/ + sampleId: LRG_1 + urlPattern: http://uswest.ensembl.org/Homo_sapiens/LRG/Summary?lrg={$id} + - deprecated: false + deprecationDate: + description: Locus Reference Genomic through Ensembl mirror (US east) + id: 1085 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1081 + location: + countryCode: GB + countryName: United Kingdom + name: EnSembl, Sanger Institute and European Bioinformatics Institute, Hinxton, Cambridge + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100631 + name: Locus Reference Genomic through Ensembl mirror (US east) + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://useast.ensembl.org/ + sampleId: LRG_1 + urlPattern: http://useast.ensembl.org/Homo_sapiens/LRG/Summary?lrg={$id} + - deprecated: false + deprecationDate: + description: Locus Reference Genomic + id: 1080 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100478 + name: Locus Reference Genomic + official: true + providerCode: ebi + resourceHomeUrl: http://www.lrg-sequence.org/ + sampleId: LRG_1 + urlPattern: ftp://ftp.ebi.ac.uk/pub/databases/lrgex/{$id}.xml + sampleId: LRG_1 + - created: 2019-06-11T14:15:31.442+0000 + deprecated: true + deprecationDate: 2020-06-04T11:17:21.453+0000 + description: MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections. + id: 41 + mirId: MIR:00000008 + modified: 2020-06-04T11:17:21.456+0000 + name: MIRIAM Registry collection + namespaceEmbeddedInLui: false + pattern: ^MIR:000\d{5}$ + prefix: miriam.collection + resources: + - deprecated: true + deprecationDate: 2020-06-04T10:00:30.300+0000 + description: MIRIAM Resources (data collection) + id: 42 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100005 + name: MIRIAM Resources (data collection) + official: false + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/miriam/ + sampleId: MIR:00000008 + urlPattern: https://registry.identifiers.org/deprecation/resources/MIR:00100005/{$id} + sampleId: MIR:00000008 + - created: 2019-06-11T14:16:21.651+0000 + deprecated: false + deprecationDate: + description: Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions. + id: 567 + mirId: MIR:00000186 + modified: 2020-06-09T19:30:57.158+0000 + name: Xenbase + namespaceEmbeddedInLui: false + pattern: ^XB\-\w+\-\d+$ + prefix: xenbase + resources: + - deprecated: false + deprecationDate: + description: Xenbase at University of Calgary + id: 569 + institution: + description: The University of Calgary is one of Canadaā€™s top comprehensive research universities, combining the best of university tradition with the city of Calgaryā€™s vibrant energy and diversity. + homeUrl: https://www.ucalgary.ca/ + id: 568 + location: + countryCode: CA + countryName: Canada + name: University of Calgary + rorId: https://ror.org/03yjb2x39 + location: + countryCode: CA + countryName: Canada + mirId: MIR:00100232 + name: Xenbase at University of Calgary + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.xenbase.org/ + sampleId: XB-GENE-922462 + urlPattern: https://www.xenbase.org/common/xsearch.do?exactSearch=true&searchIn=7&searchValue={$id} + sampleId: XB-GENE-922462 + - created: 2020-06-09T20:12:07.077+0000 + deprecated: false + deprecationDate: + description: This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein. + id: 2265 + mirId: MIR:00000739 + modified: 2020-06-26T08:48:10.292+0000 + name: UniProt Chain + namespaceEmbeddedInLui: false + pattern: ^PRO_[0-9]{10}$ + prefix: uniprot.chain + resources: + - deprecated: false + deprecationDate: + description: > + The UniProt Knowledgebase (UniProtKB) is a comprehensive resource + for protein sequence and functional information with extensive + cross-references to more than 120 external databases. This + collection is a subset of UniProtKB that provides a means to + reference the proteolytic cleavage products of a precursor protein. + id: 2266 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 24 + location: + countryCode: GB + countryName: United Kingdom + name: UniProt Consortium + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00000728 + name: UniProt Chain through Universal Protein Resource + official: true + providerCode: upr + resourceHomeUrl: https://www.uniprot.org + sampleId: PRO_0000016681 + urlPattern: http://purl.uniprot.org/annotation/{$id} + sampleId: PRO_0000016681 + - created: 2019-06-11T14:16:01.860+0000 + deprecated: false + deprecationDate: + description: The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative. + id: 350 + mirId: MIR:00000109 + modified: 2020-06-26T10:17:31.752+0000 + name: Molecular Interactions Ontology + namespaceEmbeddedInLui: true + pattern: ^MI:\d{4}$ + prefix: mi + resources: + - deprecated: false + deprecationDate: + description: Molecular Interactions Ontology through OLS + id: 351 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100142 + name: Molecular Interactions Ontology through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/mi + sampleId: '0308' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:{$id} + sampleId: '0308' + - created: 2020-07-03T09:30:53.125+0000 + deprecated: false + deprecationDate: + description: 'MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. ' + id: 2277 + mirId: MIR:00000768 + modified: 2020-07-03T09:30:53.125+0000 + name: MolMeDB + namespaceEmbeddedInLui: false + pattern: ^[m,M]{2}[0-9]{5}[0-9]*$ + prefix: molmedb + resources: + - deprecated: false + deprecationDate: + description: PalackĆ½ University Olomouc is a university with long-standing tradition. Founded in the 16th century, it is the oldest university in Moravia and the second-oldest university in the Czech Republic. Today it is a modern higher education facility with a wide range of study programmes and copious scientific and research activities. In 2019, more than 22 000 students studied in accredited study programmes, exchange programmes and lifelong learning programmes at eight faculties. PalackĆ½ University Olomouc is one of the very top Czech universities, and ranks among the best universities in the world, according to international rankings. + id: 2278 + institution: + description: PalackĆ½ University Olomouc is a university with long-standing tradition. Founded in the 16th century, it is the oldest university in Moravia and the second-oldest university in the Czech Republic. Today it is a modern higher education facility with a wide range of study programmes and copious scientific and research activities. In 2019, more than 22 000 students studied in accredited study programmes, exchange programmes and lifelong learning programmes at eight faculties. PalackĆ½ University Olomouc is one of the very top Czech universities, and ranks among the best universities in the world, according to international rankings. + homeUrl: http://www.upol.cz/en/ + id: 2276 + location: + countryCode: CZ + countryName: Czech Republic + name: PalackĆ½ University, Olomouc + rorId: + location: + countryCode: CZ + countryName: Czech Republic + mirId: MIR:00000749 + name: PalackĆ½ University, Olomouc + official: true + providerCode: upol + resourceHomeUrl: http://www.upol.cz/en/ + sampleId: MM00040 + urlPattern: https://molmedb.upol.cz/mol/{$id} + sampleId: MM00040 + - created: 2020-07-08T15:12:19.317+0000 + deprecated: false + deprecationDate: + description: Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed. + id: 2293 + mirId: MIR:00000722 + modified: 2020-07-08T15:12:19.317+0000 + name: Open Data for Access and Mining + namespaceEmbeddedInLui: false + pattern: ^[A-Za-z0-9]+$ + prefix: odam + resources: + - deprecated: false + deprecationDate: + description: Bordeaux Metabolome Facility provides equipments and expertise for the study of metabolome, lipidome and metabolic fluxes. + id: 2294 + institution: + description: INRAE is France's new National Research Institute for Agriculture, Food and Environment, created on January 1, 2020, It was formed by the merger of INRA, the National Institute for Agricultural Research, and IRSTEA, the National Research Institute of Science and Technology for the Environment and Agriculture. + homeUrl: https://www.inrae.fr/ + id: 2292 + location: + countryCode: FR + countryName: France + name: National Research Institute for Agriculture, Food and Environment + rorId: https://ror.org/003vg9w96 + location: + countryCode: FR + countryName: France + mirId: MIR:00000759 + name: INRA + official: true + providerCode: bmf + resourceHomeUrl: https://metabolome.cgfb.u-bordeaux.fr/ + sampleId: frim1 + urlPattern: http://pmb-bordeaux.fr/getdata/json/{$id}/datapackage?links=1 + sampleId: frim1 + - created: 2019-06-11T14:17:39.700+0000 + deprecated: true + deprecationDate: 2020-07-16T06:11:33.734+0000 + description: The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides symbols for both structural and functional gene families. This collection refers to records using the HGNC family symbol. + id: 1468 + mirId: MIR:00000520 + modified: 2020-07-16T06:11:33.736+0000 + name: HGNC Family + namespaceEmbeddedInLui: false + pattern: ^[A-Z0-9-]+(#[A-Z0-9-]+)?$ + prefix: hgnc.family + resources: + - deprecated: true + deprecationDate: 2020-07-16T06:11:29.395+0000 + description: HGNC Family at HUGO Genome Nomenclature Committee + id: 1469 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100671 + name: HGNC Family at HUGO Genome Nomenclature Committee + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.genenames.org/ + sampleId: PADI + urlPattern: https://registry.identifiers.org/deprecation/resources/MIR:00100671/{$id} + sampleId: PADI + - created: 2020-07-16T06:20:43.698+0000 + deprecated: false + deprecationDate: + description: The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families. + id: 2306 + mirId: MIR:00000709 + modified: 2020-07-16T06:20:43.698+0000 + name: HGNC Gene Group + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: hgnc.genegroup + resources: + - deprecated: false + deprecationDate: + description: HGNC Gene Group at HUGO Genome Nomenclature Committee + id: 2307 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00000703 + name: HGNC Gene Group at HUGO Genome Nomenclature Committee + official: true + providerCode: ebi + resourceHomeUrl: https://www.genenames.org + sampleId: '141' + urlPattern: https://www.genenames.org/cgi-bin/genefamilies/set/{$id} + sampleId: '141' + - created: 2019-06-11T14:16:32.719+0000 + deprecated: false + deprecationDate: + description: The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts. + id: 689 + mirId: MIR:00000233 + modified: 2020-07-20T14:34:20.285+0000 + name: Human Disease Ontology + namespaceEmbeddedInLui: true + pattern: ^DOID:\d+$ + prefix: doid + resources: + - deprecated: false + deprecationDate: + description: Human Disease Ontology through BioPortal + id: 690 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 571 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford University + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100292 + name: Human Disease Ontology through BioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/DOID + sampleId: '11337' + urlPattern: http://purl.bioontology.org/ontology/DOID/DOID:{$id} + - deprecated: false + deprecationDate: + description: Human Disease Ontology at Northwestern University + id: 693 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 692 + location: + countryCode: US + countryName: United States + name: University of Maryland (Maryland) and Northwestern University (Illinois) + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100297 + name: Human Disease Ontology at Northwestern University + official: false + providerCode: hdo + resourceHomeUrl: http://disease-ontology.org/ + sampleId: '11337' + urlPattern: http://disease-ontology.org/term/DOID:{$id} + - deprecated: false + deprecationDate: + description: Human Disease Ontology through OLS + id: 691 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100293 + name: Human Disease Ontology through OLS + official: true + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/doid + sampleId: '11337' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/doid/terms?obo_id=DOID:{$id} + sampleId: '11337' + - created: 2019-06-11T14:17:23.452+0000 + deprecated: false + deprecationDate: + description: The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of "GO content" meetings at which substantial changes in the ontologies are discussed and made. + id: 1292 + mirId: MIR:00000450 + modified: 2020-07-30T07:27:34.233+0000 + name: Gene Ontology Reference + namespaceEmbeddedInLui: true + pattern: ^GO_REF:\d{7}$ + prefix: go_ref + resources: + - deprecated: false + deprecationDate: + description: Gene Ontology Reference at The Gene Ontology Consortium + id: 1293 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 89 + location: + countryCode: US + countryName: United States + name: The Gene Ontology Consortium + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100584 + name: Gene Ontology Reference at The Gene Ontology Consortium + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.geneontology.org/cgi-bin/references.cgi + sampleId: '0000041' + urlPattern: https://github.com/geneontology/go-site/blob/master/metadata/gorefs/goref-{$id}.md + sampleId: '0000041' + - created: 2019-06-17T12:55:17.868+0000 + deprecated: false + deprecationDate: + description: The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide. + id: 1934 + mirId: MIR:00000715 + modified: 2020-09-23T11:03:41.882+0000 + name: GWAS Catalog + namespaceEmbeddedInLui: false + pattern: ^GCST\d{6}\d*$ + prefix: gcst + resources: + - deprecated: false + deprecationDate: + description: The European Bioinformatics Institute (EMBL-EBI) helps scientists realise the potential of 'big data' in biology, exploiting complex information to make discoveries that benefit humankind. + id: 1935 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00000775 + name: European Bioinformatics Institute + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk + sampleId: GCST000035 + urlPattern: https://www.ebi.ac.uk/gwas/studies/{$id} + sampleId: GCST000035 + - created: 2020-10-07T10:25:14.491+0000 + deprecated: false + deprecationDate: + description: 'PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. ' + id: 2370 + mirId: MIR:00000708 + modified: 2020-10-07T10:25:14.491+0000 + name: PK-DB + namespaceEmbeddedInLui: false + pattern: ^PKDB[0-9]{5}$ + prefix: pkdb + resources: + - deprecated: false + deprecationDate: + description: Organization information obtained from ROR API using ROR ID 'https://ror.org/01hcx6992' with Wikidata IDs [Q152087], and ISNI IDs [0000 0001 2248 7639] + id: 2371 + institution: + description: Humboldt University of Berlin is a university in the central borough of Mitte in Berlin, Germany. It was established by Frederick William III on the initiative of Wilhelm von Humboldt, Johann Gottlieb Fichte and Friedrich Ernst Daniel Schleiermacher as the University of Berlin (UniversitƤt zu Berlin) in 1809, and opened in 1810. + homeUrl: https://www.hu-berlin.de/?set_language=en&cl=en + id: 2369 + location: + countryCode: DE + countryName: Germany + name: Humboldt University of Berlin + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00000714 + name: Humboldt University of Berlin + official: true + providerCode: pkdb + resourceHomeUrl: https://www.hu-berlin.de/?set_language=en&cl=en + sampleId: PKDB00198 + urlPattern: https://pk-db.com/data/{$id} + sampleId: PKDB00198 + - created: 2020-10-07T10:43:05.918+0000 + deprecated: false + deprecationDate: + description: > + The Morpheus model repository is an open-access data resource to store, + search and retrieve unpublished and published computational models of + spatio-temporal and multicellular biological systems, encoded in the + MorpheusML language and readily executable with the Morpheus software. + id: 2377 + mirId: MIR:00000725 + modified: 2020-10-07T10:43:05.918+0000 + name: Morpheus model repository + namespaceEmbeddedInLui: false + pattern: ^M[0-9]{4,}$ + prefix: morpheus + resources: + - deprecated: false + deprecationDate: + description: >- + Morpheus.lab is affiliated with the Center for Information Services + and High Performance Computing (ZIH) + + at Technische UniversitƤt Dresden, Germany. Morpheus.lab develops and maintains the open-source software Morpheus, the domain-specific language MorpheusML, online courses, a user forum and the model repository. + id: 2378 + institution: + description: The Technische UniversitƤt Dresden (TUD) is one of the largest ā€œTechnische UniversitƤtenā€ in Germany and one of the leading and most dynamic universities in Germany. As a full-curriculum university with 17 faculties in five schools it offers a broad variety of 124 disciplines and covers a wide research spectrum. Its focuses Health Sciences, Biomedicine & Bioengineering, Information Technology & Microelectronics, Smart Materials & Structures, Energy, Mobility & Environment as well as Culture & Societal Change are considered exemplary in Germany and throughout Europe. + homeUrl: https://tu-dresden.de/?set_language=en + id: 2376 + location: + countryCode: DE + countryName: Germany + name: TU Dresden + rorId: + location: + countryCode: DE + countryName: Germany + mirId: MIR:00000700 + name: Morpheus.lab + official: true + providerCode: morpheus.lab + resourceHomeUrl: https://morpheus.gitlab.io/ + sampleId: M0001 + urlPattern: https://morpheus.gitlab.io/models/{$id} + sampleId: M0001 + - created: 2020-10-08T09:25:59.424+0000 + deprecated: false + deprecationDate: + description: GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their "raw/processed" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines. + id: 2384 + mirId: MIR:00000721 + modified: 2020-10-08T09:25:59.424+0000 + name: GlycoPOST + namespaceEmbeddedInLui: false + pattern: ^GPST[0-9]{6}$ + prefix: glycopost + resources: + - deprecated: false + deprecationDate: + description: Niigata University has a long institutional history, with origins going back some 150 years. Since its inauguration as a national university in 1949 under the new university system, it has played an important role in higher education and research in Japan. Over the years, it has grown into a large-scale comprehensive university offering bachelor's, master's, and doctoral degree programs under ten faculties and five graduate schools in a wide range of disciplines spanning the humanities, education, law, economics, science, engineering, agriculture, medicine, health sciences, and dentistry. With a student body of approximately 13,000 and 3,000 academic and administrative staff members, and as a research-oriented university, it boasts several world-leading research institutes, including the Brain Research Institute and the Research Institute for Natural Hazards and Disaster Recovery as well as a university hospital providing high-level medical care as an advanced treatment hospital for the region. + id: 2385 + institution: + description: Niigata University has a long institutional history, with origins going back some 150 years. Since its inauguration as a national university in 1949 under the new university system, it has played an important role in higher education and research in Japan. Over the years, it has grown into a large-scale comprehensive university offering bachelor's, master's, and doctoral degree programs under ten faculties and five graduate schools in a wide range of disciplines spanning the humanities, education, law, economics, science, engineering, agriculture, medicine, health sciences, and dentistry. With a student body of approximately 13,000 and 3,000 academic and administrative staff members, and as a research-oriented university, it boasts several world-leading research institutes, including the Brain Research Institute and the Research Institute for Natural Hazards and Disaster Recovery as well as a university hospital providing high-level medical care as an advanced treatment hospital for the region. + homeUrl: https://www.niigata-u.ac.jp/ + id: 2383 + location: + countryCode: JP + countryName: Japan + name: Niigata University + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00000704 + name: Niigata University + official: true + providerCode: glycopost + resourceHomeUrl: https://glycopost.glycosmos.org + sampleId: GPST000024 + urlPattern: https://glycopost.glycosmos.org/entry/{$id} + sampleId: GPST000024 + - created: 2019-06-11T14:17:22.433+0000 + deprecated: false + deprecationDate: + description: Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. + id: 1280 + mirId: MIR:00000446 + modified: 2021-02-27T10:19:43.666+0000 + name: UBERON + namespaceEmbeddedInLui: true + pattern: ^UBERON:\d+$ + prefix: uberon + resources: + - deprecated: false + deprecationDate: + description: UBERON through bioPortal + id: 1281 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 5 + location: + countryCode: US + countryName: United States + name: National Center for Biomedical Ontology, Stanford + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00100579 + name: UBERON through bioPortal + official: false + providerCode: bptl + resourceHomeUrl: http://bioportal.bioontology.org/ontologies/UBERON + sampleId: '0008203' + urlPattern: http://purl.bioontology.org/ontology/UBERON/UBERON:{$id} + - deprecated: false + deprecationDate: + description: UBERON through OLS + id: 1282 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100580 + name: UBERON through OLS + official: false + providerCode: ols + resourceHomeUrl: https://www.ebi.ac.uk/ols/ontologies/uberon + sampleId: '0008203' + urlPattern: https://www.ebi.ac.uk/ols/ontologies/uberon/terms?obo_id=UBERON:{$id} + sampleId: '0008203' + - created: 2021-02-17T18:06:52.762+0000 + deprecated: false + deprecationDate: + description: The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins. + id: 2524 + mirId: MIR:00000795 + modified: 2021-02-17T18:06:52.762+0000 + name: Protein Ensemble Database ensemble + namespaceEmbeddedInLui: false + pattern: ^PED\d{5}e\d{3}$ + prefix: ped.ensemble + resources: + - deprecated: false + deprecationDate: + description: The Protein Ensemble Database (PED) is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins. + id: 2525 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1769 + location: + countryCode: IT + countryName: Italy + name: University of Padua + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00000791 + name: PED - Protein Ensemble Database + official: true + providerCode: ped.ensemble + resourceHomeUrl: https://proteinensemble.org/ + sampleId: PED00017e001 + urlPattern: https://proteinensemble.org/{$id} + sampleId: PED00017e001 + - created: 2021-02-17T18:09:04.420+0000 + deprecated: false + deprecationDate: + description: RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database. + id: 2527 + mirId: MIR:00000764 + modified: 2021-02-17T18:09:04.420+0000 + name: RepeatsDB Structure + namespaceEmbeddedInLui: false + pattern: ^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$ + prefix: repeatsdb.structure + resources: + - deprecated: false + deprecationDate: + description: RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database. + id: 2528 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1769 + location: + countryCode: IT + countryName: Italy + name: University of Padua + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00000780 + name: RepeatsDB + official: true + providerCode: repeatsdb.structure + resourceHomeUrl: https://repeatsdb.org/ + sampleId: 2gc4E + urlPattern: https://repeatsdb.org/structure/{$id} + sampleId: 2gc4E + - created: 2020-10-22T01:16:20.744+0000 + deprecated: false + deprecationDate: + description: BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML). + id: 2416 + mirId: MIR:00000767 + modified: 2020-10-22T01:16:20.744+0000 + name: BioSimulators + namespaceEmbeddedInLui: false + pattern: '[a-zA-Z0-9-_]+' + prefix: biosimulators + resources: + - deprecated: false + deprecationDate: + description: The BioSimulators project aims to make it easier for the research community to reuse biosimulation tools through standards and a registry of simulation tools. + id: 2417 + institution: + description: The Icahn School of Medicine at Mount Sinai is an international leader in medical and scientific training, biomedical research, and patient care. It is the medical school for the Mount Sinai Health System, which includes eight hospital campuses, and has more than 5,000 faculty and nearly 2,000 students, residents and fellows. + homeUrl: https://icahn.mssm.edu/ + id: 2247 + location: + countryCode: US + countryName: United States + name: Icahn School of Medicine at Mount Sinai + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00000746 + name: BioSimulators + official: true + providerCode: icahn + resourceHomeUrl: https://biosimulators.org/ + sampleId: vcell + urlPattern: https://biosimulators.org/simulators/{$id} + sampleId: vcell + - created: 2020-11-05T10:42:17.722+0000 + deprecated: false + deprecationDate: + description: The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology. + id: 2423 + mirId: MIR:00000712 + modified: 2020-11-05T10:59:53.808+0000 + name: Gender, Sex, and Sexual Orientation (GSSO) Ontology + namespaceEmbeddedInLui: true + pattern: ^GSSO:\d{6}$ + prefix: gsso + resources: + - deprecated: false + deprecationDate: + description: One of the National Centers for Biomedical Computing, and is funded by the NIH. Among the goals of the NCBO are to provide tools for discovery and access of biomedical ontologies, which are a type of controlled vocabulary designed to allow the expression of complex relationships in machine-readable form. + id: 2424 + institution: + description: UC is a public research university with an enrollment of more than 46,000 students and has been named "Among the top tier of the Best National Universities," according to U.S. News & World Report. + homeUrl: https://www.uc.edu/ + id: 2422 + location: + countryCode: US + countryName: United States + name: University of Cincinnati + rorId: https://ror.org/01e3m7079 + location: + countryCode: US + countryName: United States + mirId: MIR:00000758 + name: National Center for Biomedical Ontology (NCBO) BioPortal + official: true + providerCode: bioportal + resourceHomeUrl: https://bioportal.bioontology.org/ + sampleId: '002368' + urlPattern: http://purl.obolibrary.org/obo/GSSO_{$id} + sampleId: '002368' + - created: 2019-06-11T14:17:28.979+0000 + deprecated: false + deprecationDate: + description: LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds. + id: 1357 + mirId: MIR:00000477 + modified: 2020-11-20T10:55:30.526+0000 + name: LigandBox + namespaceEmbeddedInLui: false + pattern: ^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$ + prefix: ligandbox + resources: + - deprecated: false + deprecationDate: + description: LigandBox at N2PC + id: 1359 + institution: + description: https://www.natprodchem.jp/files/english.pdf + homeUrl: https://www.natprodchem.jp/ + id: 1358 + location: + countryCode: JP + countryName: Japan + name: Next generation Natural Products Chemistry + rorId: + location: + countryCode: JP + countryName: Japan + mirId: MIR:00100612 + name: LigandBox at N2PC + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: http://www.mypresto5.com/ligandbox/cgi-bin/index.cgi?LANG=en + sampleId: D00001 + urlPattern: http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id={$id} + sampleId: D00001 + - created: 2019-06-11T14:17:59.445+0000 + deprecated: false + deprecationDate: + description: The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt "neoplasm" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs. + id: 1666 + mirId: MIR:00000600 + modified: 2020-11-25T15:01:33.103+0000 + name: Progenetix + namespaceEmbeddedInLui: false + pattern: ^\w{3,15}[-_]\w[\w.-]{3,128}$ + prefix: pgx + resources: + - deprecated: false + deprecationDate: + description: Progenetix + id: 1668 + institution: + description: No description available + homeUrl: https://www.uzh.ch/en.html + id: 1667 + location: + countryCode: CH + countryName: Switzerland + name: University of Zurich + rorId: https://ror.org/02crff812 + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100801 + name: Progenetix + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://progenetix.org/ + sampleId: pgxbs-kftva5zv + urlPattern: https://progenetix.org/services/ids/{$id} + sampleId: pgxbs-kftva5zv + - created: 2020-12-14T12:49:56.333+0000 + deprecated: false + deprecationDate: + description: Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease. + id: 2477 + mirId: MIR:00000789 + modified: 2020-12-14T12:49:56.333+0000 + name: SARS-CoV-2 + namespaceEmbeddedInLui: false + pattern: ^\w+_COVID19_[-\w]+$ + prefix: covid19 + resources: + - deprecated: false + deprecationDate: + description: Elixir@UiT is the local branch of ELIXIR-NO node based at UiT. + id: 2478 + institution: + description: Organization information obtained from ROR API using ROR ID 'https://ror.org/00wge5k78' with Wikidata IDs [Q279724], and ISNI IDs [0000000122595234] + homeUrl: https://uit.no/startsida + id: 2476 + location: + countryCode: NO + countryName: Norway + name: University of TromsĆø - The Arctic University of Norway + rorId: + location: + countryCode: NO + countryName: Norway + mirId: MIR:00000787 + name: Elixir@UiT + official: true + providerCode: sfb + resourceHomeUrl: https://covid19.sfb.uit.no + sampleId: SFB_COVID19_MW286762 + urlPattern: https://covid19.sfb.uit.no/api/records/{$id} + sampleId: SFB_COVID19_MW286762 + - created: 2020-12-14T12:57:54.560+0000 + deprecated: false + deprecationDate: + description: 'Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. ' + id: 2484 + mirId: MIR:00000785 + modified: 2020-12-14T12:57:54.560+0000 + name: OMA HOGs + namespaceEmbeddedInLui: true + pattern: ^HOG:[0-9]{7}(\.[0-9a-z.]+)?(_[0-9]+)?$ + prefix: oma.hog + resources: + - deprecated: false + deprecationDate: + description: Organization information obtained from ROR API using ROR ID 'https://ror.org/05a28rw58' with Wikidata IDs [Q11942], and ISNI IDs [0000 0001 2156 2780] + id: 2485 + institution: + description: Organization information obtained from ROR API using ROR ID 'https://ror.org/05a28rw58' with Wikidata IDs [Q11942], and ISNI IDs [0000 0001 2156 2780] + homeUrl: https://ethz.ch/en.html + id: 2483 + location: + countryCode: CH + countryName: Switzerland + name: ETH Zurich + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00000761 + name: ETH Zurich + official: true + providerCode: oma + resourceHomeUrl: https://omabrowser.org + sampleId: HOG:0459895 + urlPattern: https://omabrowser.org/oma/hog/resolve/HOG:{$id}/ + sampleId: HOG:0459895 + - created: 2021-02-01T15:47:59.756+0000 + deprecated: false + deprecationDate: + description: The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease. + id: 2497 + mirId: MIR:00000774 + modified: 2021-02-01T15:47:59.756+0000 + name: VMH Gene + namespaceEmbeddedInLui: false + pattern: ^[0-9]+\.[0-9]+ + prefix: vmhgene + resources: + - deprecated: false + deprecationDate: + description: >- + VMH Gene, provided by Thiele Group, NUI Galway. + + The VMH database captures information on human and gut microbial metabolism and links this information to hundreds of diseases and nutritional data. + id: 2498 + institution: + description: Organization information obtained from ROR API using ROR ID 'https://ror.org/03bea9k73' with Wikidata IDs [Q644478], and ISNI IDs [0000 0004 0488 0789] + homeUrl: http://www.nuigalway.ie/ + id: 2496 + location: + countryCode: IE + countryName: Ireland + name: National University of Ireland, Galway + rorId: + location: + countryCode: IE + countryName: Ireland + mirId: MIR:00000794 + name: VMH Gene + official: true + providerCode: NUI + resourceHomeUrl: https://www.vmh.life/ + sampleId: '8639.1' + urlPattern: https://www.vmh.life/#gene/{$id} + sampleId: '8639.1' + - created: 2019-06-11T14:17:44.698+0000 + deprecated: false + deprecationDate: + description: GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype. + id: 1523 + mirId: MIR:00000543 + modified: 2021-02-01T16:43:30.697+0000 + name: GWAS Central Phenotype + namespaceEmbeddedInLui: false + pattern: ^HGVPM\d+$ + prefix: gwascentral.phenotype + resources: + - deprecated: false + deprecationDate: + description: GWAS Central Phenotype at University of Leicester + id: 1524 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1079 + location: + countryCode: GB + countryName: United Kingdom + name: Department of Genetics, University of Leicester, Leicester + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00100720 + name: GWAS Central Phenotype at University of Leicester + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.gwascentral.org/phenotypes + sampleId: HGVPM623 + urlPattern: https://www.gwascentral.org/phenotype/{$id} + sampleId: HGVPM623 + - created: 2021-02-17T17:56:14.329+0000 + deprecated: false + deprecationDate: + description: ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs). + id: 2518 + mirId: MIR:00000769 + modified: 2021-02-17T17:56:14.329+0000 + name: ClinVar Submitter + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: clinvar.submitter + resources: + - deprecated: false + deprecationDate: + description: ClinVar Submitter ids are assigned by NCBI for all authorized submitters of clinvar submissions (SCVs) + id: 2519 + institution: + description: The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. + homeUrl: https://www.ncbi.nlm.nih.gov/ + id: 26 + location: + countryCode: US + countryName: United States + name: National Center for Biotechnology Information + rorId: https://ror.org/02meqm098 + location: + countryCode: US + countryName: United States + mirId: MIR:00000783 + name: ClinVar Submitter at NCBI + official: true + providerCode: ncbi + resourceHomeUrl: https://www.ncbi.nlm.nih.gov/clinvar/ + sampleId: '26957' + urlPattern: https://www.ncbi.nlm.nih.gov/clinvar/submitters/{$id} + sampleId: '26957' + - created: 2021-02-17T18:02:05.160+0000 + deprecated: false + deprecationDate: + description: The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins. + id: 2521 + mirId: MIR:00000777 + modified: 2021-02-17T18:02:05.160+0000 + name: Protein Ensemble Database + namespaceEmbeddedInLui: false + pattern: ^PED\d{5}$ + prefix: ped + resources: + - deprecated: false + deprecationDate: + description: The Protein Ensemble Database (PED) is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins. + id: 2522 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1769 + location: + countryCode: IT + countryName: Italy + name: University of Padua + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00000784 + name: PED - Protein Ensemble Database + official: true + providerCode: ped + resourceHomeUrl: https://proteinensemble.org/ + sampleId: PED00037 + urlPattern: https://proteinensemble.org/{$id} + sampleId: PED00037 + - created: 2021-02-17T18:11:07.592+0000 + deprecated: false + deprecationDate: + description: RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database. + id: 2532 + mirId: MIR:00000792 + modified: 2021-02-17T18:11:07.592+0000 + name: RepeatsDB Protein + namespaceEmbeddedInLui: false + pattern: ^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$ + prefix: repeatsdb.protein + resources: + - deprecated: false + deprecationDate: + description: RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database. + id: 2533 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1769 + location: + countryCode: IT + countryName: Italy + name: University of Padua + rorId: + location: + countryCode: IT + countryName: Italy + mirId: MIR:00000699 + name: RepeatsDB + official: true + providerCode: '' + resourceHomeUrl: https://repeatsdb.org/ + sampleId: P29894 + urlPattern: https://repeatsdb.org/protein/{$id} + sampleId: P29894 + - created: 2021-02-26T07:35:34.234+0000 + deprecated: false + deprecationDate: + description: The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access. + id: 2548 + mirId: MIR:00000796 + modified: 2021-02-26T07:35:34.234+0000 + name: gateway + namespaceEmbeddedInLui: false + pattern: ^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$ + prefix: gateway + resources: + - deprecated: false + deprecationDate: + description: Organization information obtained from ROR API using ROR ID 'https://ror.org/04rtjaj74' with no Wikidata information, and no ISNI information + id: 2549 + institution: + description: Organization information obtained from ROR API using ROR ID 'https://ror.org/04rtjaj74' with no Wikidata information, and no ISNI information + homeUrl: https://www.hdruk.ac.uk + id: 2547 + location: + countryCode: GB + countryName: United Kingdom + name: Health Data Research UK + rorId: + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00000697 + name: Health Data Research UK + official: true + providerCode: hdruk + resourceHomeUrl: https://www.hdruk.ac.uk + sampleId: fd8d0743-344a-4758-bb97-f8ad84a37357 + urlPattern: https://web.www.healthdatagateway.org/dataset/{$id} + sampleId: fd8d0743-344a-4758-bb97-f8ad84a37357 + - created: 2019-06-11T14:17:50.805+0000 + deprecated: false + deprecationDate: + description: MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments. + id: 1585 + mirId: MIR:00000569 + modified: 2021-02-26T09:49:03.051+0000 + name: MetaNetX compartment + namespaceEmbeddedInLui: false + pattern: ^(MNX[CD]\d+|BOUNDARY|IN|OUT)$ + prefix: metanetx.compartment + resources: + - deprecated: false + deprecationDate: + description: MetaNetX compartment at SIB Swiss Institute of Bioinformatics + id: 1586 + institution: + description: CURATOR_REVIEW + homeUrl: CURATOR_REVIEW + id: 1581 + location: + countryCode: CH + countryName: Switzerland + name: Vital-IT group, SIB Swiss Institute of Bioinformatics, Lausanne + rorId: + location: + countryCode: CH + countryName: Switzerland + mirId: MIR:00100750 + name: MetaNetX compartment at SIB Swiss Institute of Bioinformatics + official: false + providerCode: CURATOR_REVIEW + resourceHomeUrl: https://www.metanetx.org/ + sampleId: MNXC15 + urlPattern: https://www.metanetx.org/comp_info/{$id} + sampleId: MNXC15 + - created: 2021-02-26T10:27:01.032+0000 + deprecated: false + deprecationDate: + description: The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent. + id: 2559 + mirId: MIR:00000798 + modified: 2021-02-26T10:27:01.032+0000 + name: Animal Genome QTL + namespaceEmbeddedInLui: false + pattern: ^\d+$ + prefix: qtldb + resources: + - deprecated: false + deprecationDate: + description: Animal QTL DB at Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University + id: 2560 + institution: + description: Organization information obtained from ROR API using ROR ID 'https://ror.org/04rswrd78' with Wikidata IDs [Q1136919], and ISNI IDs [0000 0004 1936 7312] + homeUrl: https://www.iastate.edu/ + id: 2558 + location: + countryCode: US + countryName: United States + name: Iowa State University + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00000797 + name: Animal QTL DB at Iowa State University + official: true + providerCode: iastate + resourceHomeUrl: https://www.animalgenome.org/QTLdb + sampleId: '4685' + urlPattern: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id} + sampleId: '4685' + - created: 2021-02-28T15:53:07.380+0000 + deprecated: false + deprecationDate: + description: runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive. + id: 2565 + mirId: MIR:00000897 + modified: 2021-02-28T15:53:07.380+0000 + name: runBioSimulations + namespaceEmbeddedInLui: false + pattern: '[0-9a-z]{24,24}' + prefix: runbiosimulations + resources: + - deprecated: false + deprecationDate: + description: Organization information obtained from ROR API using ROR ID 'https://ror.org/04a9tmd77' with Wikidata IDs [Q1950740], and ISNI IDs [0000 0001 0670 2351] + id: 2566 + institution: + description: The Icahn School of Medicine at Mount Sinai is an international leader in medical and scientific training, biomedical research, and patient care. It is the medical school for the Mount Sinai Health System, which includes eight hospital campuses, and has more than 5,000 faculty and nearly 2,000 students, residents and fellows. + homeUrl: https://icahn.mssm.edu/ + id: 2247 + location: + countryCode: US + countryName: United States + name: Icahn School of Medicine at Mount Sinai + rorId: + location: + countryCode: US + countryName: United States + mirId: MIR:00000898 + name: Icahn School of Medicine at Mount Sinai + official: true + providerCode: icahn + resourceHomeUrl: https://icahn.mssm.edu/ + sampleId: 5fde96bdc5f1aa9ff0cce18a + urlPattern: https://run.biosimulations.org/simulations/{$id} + sampleId: 5fde96bdc5f1aa9ff0cce18a + - created: 2021-02-28T16:13:04.331+0000 + deprecated: false + deprecationDate: + description: ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature. + id: 2571 + mirId: MIR:00000799 + modified: 2021-02-28T16:13:04.331+0000 + name: ChEMBL + namespaceEmbeddedInLui: false + pattern: ^CHEMBL\d+$ + prefix: chembl + resources: + - deprecated: false + deprecationDate: + description: ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature. + id: 2572 + institution: + description: >- + At EMBL-EBI, we make the worldā€™s public biological data freely + available to the scientific community via a range of services and + tools, perform basic research and provide professional training in + bioinformatics. + + We are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states. + homeUrl: https://www.ebi.ac.uk + id: 2 + location: + countryCode: GB + countryName: United Kingdom + name: European Bioinformatics Institute + rorId: https://ror.org/02catss52 + location: + countryCode: GB + countryName: United Kingdom + mirId: MIR:00000800 + name: European Bioinformatics Institute + official: true + providerCode: ebi + resourceHomeUrl: https://www.ebi.ac.uk/chembl + sampleId: CHEMBL4303805 + urlPattern: 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"schema:storageRequirements" - }, - "streetAddress": { - "@id": "schema:streetAddress" - }, - "strengthUnit": { - "@id": "schema:strengthUnit" - }, - "strengthValue": { - "@id": "schema:strengthValue" - }, - "structuralClass": { - "@id": "schema:structuralClass" - }, - "study": { - "@id": "schema:study" - }, - "studyDesign": { - "@id": "schema:studyDesign" - }, - "studyLocation": { - "@id": "schema:studyLocation" - }, - "studySubject": { - "@id": "schema:studySubject" - }, - "stupidProperty": { - "@id": "schema:stupidProperty" - }, - "subEvent": { - "@id": "schema:subEvent" - }, - "subEvents": { - "@id": "schema:subEvents" - }, - "subOrganization": { - "@id": "schema:subOrganization" - }, - "subReservation": { - "@id": "schema:subReservation" - }, - "subStageSuffix": { - "@id": "schema:subStageSuffix" - }, - "subStructure": { - "@id": "schema:subStructure" - }, - "subTest": { - "@id": "schema:subTest" - }, - "subTrip": { - "@id": "schema:subTrip" - }, - "subjectOf": { - "@id": "schema:subjectOf" - }, - "subtitleLanguage": { - "@id": "schema:subtitleLanguage" - }, - "successorOf": { - "@id": "schema:successorOf" - }, - "sugarContent": { - "@id": "schema:sugarContent" - }, - "suggestedAnswer": { - "@id": "schema:suggestedAnswer" - }, - "suggestedGender": { - "@id": "schema:suggestedGender" - }, - "suggestedMaxAge": { - "@id": "schema:suggestedMaxAge" - }, - "suggestedMinAge": { - "@id": "schema:suggestedMinAge" - }, - "suitableForDiet": { - "@id": "schema:suitableForDiet" - }, - "superEvent": { - "@id": "schema:superEvent" - }, - "supersededBy": { - "@id": "schema:supersededBy" - }, - "supply": { - "@id": "schema:supply" - }, - "supplyTo": { - "@id": "schema:supplyTo" - }, - "supportingData": { - "@id": "schema:supportingData" - }, - "surface": { - "@id": "schema:surface" - }, - "target": { - "@id": "schema:target" - }, - "targetCollection": { - "@id": "schema:targetCollection" - }, - "targetDescription": { - "@id": "schema:targetDescription" - }, - "targetName": { - "@id": "schema:targetName" - }, - "targetPlatform": { - "@id": "schema:targetPlatform" - }, - "targetPopulation": { - "@id": "schema:targetPopulation" - }, - "targetProduct": { - "@id": "schema:targetProduct" - }, - "targetUrl": { - "@id": "schema:targetUrl", - "@type": "@id" - }, - "taxID": { - "@id": "schema:taxID" - }, - "teaches": { - "@id": "schema:teaches" - }, - "telephone": { - "@id": "schema:telephone" - }, - "temporal": { - "@id": "schema:temporal" - }, - "temporalCoverage": { - "@id": "schema:temporalCoverage" - }, - "termCode": { - "@id": "schema:termCode" - }, - "termDuration": { - "@id": "schema:termDuration" - }, - "termsOfService": { - "@id": "schema:termsOfService" - }, - "termsPerYear": { - "@id": "schema:termsPerYear" - }, - "text": { - "@id": "schema:text" - }, - "textValue": { - "@id": "schema:textValue" - }, - "thumbnail": { - "@id": "schema:thumbnail" - }, - "thumbnailUrl": { - "@id": "schema:thumbnailUrl", - "@type": "@id" - }, - "tickerSymbol": { - "@id": "schema:tickerSymbol" - }, - "ticketNumber": { - "@id": "schema:ticketNumber" - }, - "ticketToken": { - "@id": "schema:ticketToken" - }, - "ticketedSeat": { - "@id": "schema:ticketedSeat" - }, - "timeOfDay": { - "@id": "schema:timeOfDay" - }, - "timeRequired": { - "@id": "schema:timeRequired" - }, - "timeToComplete": { - "@id": "schema:timeToComplete" - }, - "tissueSample": { - "@id": "schema:tissueSample" - }, - "title": { - "@id": "schema:title" - }, - "titleEIDR": { - "@id": "schema:titleEIDR" - }, - "toLocation": { - "@id": "schema:toLocation" - }, - "toRecipient": { - "@id": "schema:toRecipient" - }, - "tongueWeight": { - "@id": "schema:tongueWeight" - }, - "tool": { - "@id": "schema:tool" - }, - "torque": { - "@id": "schema:torque" - }, - "totalJobOpenings": { - "@id": "schema:totalJobOpenings" - }, - "totalPaymentDue": { - "@id": "schema:totalPaymentDue" - }, - "totalPrice": { - "@id": "schema:totalPrice" - }, - "totalTime": { - "@id": "schema:totalTime" - }, - "tourBookingPage": { - "@id": "schema:tourBookingPage", - "@type": "@id" - }, - "touristType": { - "@id": "schema:touristType" - }, - "track": { - "@id": "schema:track" - }, - "trackingNumber": { - "@id": "schema:trackingNumber" - }, - "trackingUrl": { - "@id": "schema:trackingUrl", - "@type": "@id" - }, - "tracks": { - "@id": "schema:tracks" - }, - "trailer": { - "@id": "schema:trailer" - }, - "trailerWeight": { - "@id": "schema:trailerWeight" - }, - "trainName": { - "@id": "schema:trainName" - }, - "trainNumber": { - "@id": "schema:trainNumber" - }, - "trainingSalary": { - "@id": "schema:trainingSalary" - }, - "transFatContent": { - "@id": "schema:transFatContent" - }, - "transcript": { - "@id": "schema:transcript" - }, - "transitTime": { - "@id": "schema:transitTime" - }, - "transitTimeLabel": { - "@id": "schema:transitTimeLabel" - }, - "translationOfWork": { - "@id": "schema:translationOfWork" - }, - "translator": { - "@id": "schema:translator" - }, - "transmissionMethod": { - "@id": "schema:transmissionMethod" - }, - "travelBans": { - "@id": "schema:travelBans", - "@type": "@id" - }, - "trialDesign": { - "@id": "schema:trialDesign" - }, - "tributary": { - "@id": "schema:tributary" - }, - "type": "@type", - "typeOfBed": { - "@id": "schema:typeOfBed" - }, - "typeOfGood": { - "@id": "schema:typeOfGood" - }, - "typicalAgeRange": { - "@id": "schema:typicalAgeRange" - }, - "typicalCreditsPerTerm": { - "@id": "schema:typicalCreditsPerTerm" - }, - "typicalTest": { - "@id": "schema:typicalTest" - }, - "underName": { - "@id": "schema:underName" - }, - "unitCode": { - "@id": "schema:unitCode" - }, - "unitText": { - "@id": "schema:unitText" - }, - "unnamedSourcesPolicy": { - "@id": "schema:unnamedSourcesPolicy", - "@type": "@id" - }, - "unsaturatedFatContent": { - "@id": "schema:unsaturatedFatContent" - }, - "uploadDate": { - "@id": "schema:uploadDate", - "@type": "Date" - }, - "upvoteCount": { - "@id": "schema:upvoteCount" - }, - "url": { - "@id": "schema:url", - "@type": "@id" - }, - "urlTemplate": { - "@id": "schema:urlTemplate" - }, - "usageInfo": { - "@id": "schema:usageInfo", - "@type": "@id" - }, - "usedToDiagnose": { - "@id": "schema:usedToDiagnose" - }, - "userInteractionCount": { - "@id": "schema:userInteractionCount" - }, - "usesDevice": { - "@id": "schema:usesDevice" - }, - "usesHealthPlanIdStandard": { - "@id": "schema:usesHealthPlanIdStandard" - }, - "validFor": { - "@id": "schema:validFor" - }, - "validFrom": { - "@id": "schema:validFrom", - "@type": "Date" - }, - "validIn": { - "@id": "schema:validIn" - }, - "validThrough": { - "@id": "schema:validThrough", - "@type": "Date" - }, - "validUntil": { - "@id": "schema:validUntil", - "@type": "Date" - }, - "value": { - "@id": "schema:value" - }, - "valueAddedTaxIncluded": { - "@id": "schema:valueAddedTaxIncluded" - }, - "valueMaxLength": { - "@id": "schema:valueMaxLength" - }, - "valueMinLength": { - "@id": "schema:valueMinLength" - }, - "valueName": { - "@id": "schema:valueName" - }, - "valuePattern": { - "@id": "schema:valuePattern" - }, - "valueReference": { - "@id": "schema:valueReference" - }, - "valueRequired": { - "@id": "schema:valueRequired" - }, - "variableMeasured": { - "@id": "schema:variableMeasured" - }, - "variablesMeasured": { - "@id": "schema:variablesMeasured" - }, - "variantCover": { - "@id": "schema:variantCover" - }, - "variesBy": { - "@id": "schema:variesBy" - }, - "vatID": { - "@id": "schema:vatID" - }, - "vehicleConfiguration": { - "@id": "schema:vehicleConfiguration" - }, - "vehicleEngine": { - "@id": "schema:vehicleEngine" - }, - "vehicleIdentificationNumber": { - "@id": "schema:vehicleIdentificationNumber" - }, - "vehicleInteriorColor": { - "@id": "schema:vehicleInteriorColor" - }, - "vehicleInteriorType": { - "@id": "schema:vehicleInteriorType" - }, - "vehicleModelDate": { - "@id": "schema:vehicleModelDate", - "@type": "Date" - }, - "vehicleSeatingCapacity": { - "@id": "schema:vehicleSeatingCapacity" - }, - "vehicleSpecialUsage": { - "@id": "schema:vehicleSpecialUsage" - }, - "vehicleTransmission": { - "@id": "schema:vehicleTransmission" - }, - "vendor": { - "@id": "schema:vendor" - }, - "verificationFactCheckingPolicy": { - "@id": "schema:verificationFactCheckingPolicy", - "@type": "@id" - }, - "version": { - "@id": "schema:version" - }, - "video": { - "@id": "schema:video" - }, - "videoFormat": { - "@id": "schema:videoFormat" - }, - "videoFrameSize": { - "@id": "schema:videoFrameSize" - }, - "videoQuality": { - "@id": "schema:videoQuality" - }, - "void": "http://rdfs.org/ns/void#", - "volumeNumber": { - "@id": "schema:volumeNumber" - }, - "warning": { - "@id": "schema:warning" - }, - "warranty": { - "@id": "schema:warranty" - }, - "warrantyPromise": { - "@id": "schema:warrantyPromise" - }, - "warrantyScope": { - "@id": "schema:warrantyScope" - }, - "webCheckinTime": { - "@id": "schema:webCheckinTime", - "@type": "DateTime" - }, - "webFeed": { - "@id": "schema:webFeed", - "@type": "@id" - }, - "weight": { - "@id": "schema:weight" - }, - "weightTotal": { - "@id": "schema:weightTotal" - }, - "wheelbase": { - "@id": "schema:wheelbase" - }, - "width": { - "@id": "schema:width" - }, - "winner": { - "@id": "schema:winner" - }, - "wordCount": { - "@id": "schema:wordCount" - }, - "workExample": { - "@id": "schema:workExample" - }, - "workFeatured": { - "@id": "schema:workFeatured" - }, - "workHours": { - "@id": "schema:workHours" - }, - "workLocation": { - "@id": "schema:workLocation" - }, - "workPerformed": { - "@id": "schema:workPerformed" - }, - "workPresented": { - "@id": "schema:workPresented" - }, - "workTranslation": { - "@id": "schema:workTranslation" - }, - "workload": { - "@id": "schema:workload" - }, - "worksFor": { - "@id": "schema:worksFor" - }, - "worstRating": { - "@id": "schema:worstRating" - }, - "xml": "http://www.w3.org/XML/1998/namespace", - "xpath": { - "@id": "schema:xpath" - }, - "xsd": "http://www.w3.org/2001/XMLSchema#", - "yearBuilt": { - "@id": "schema:yearBuilt" - }, - "yearlyRevenue": { - "@id": "schema:yearlyRevenue" - }, - "yearsInOperation": { - "@id": "schema:yearsInOperation" - }, - "yield": { - "@id": "schema:yield" - } - } -} diff --git a/fuji_server/data/jsonldcontext.yaml b/fuji_server/data/jsonldcontext.yaml new file mode 100644 index 00000000..2a2e9c01 --- /dev/null +++ b/fuji_server/data/jsonldcontext.yaml @@ -0,0 +1,5377 @@ +'@context': + 3DModel: + '@id': schema:3DModel + '@vocab': http://schema.org/ + AMRadioChannel: + '@id': schema:AMRadioChannel + APIReference: + '@id': schema:APIReference + Abdomen: + '@id': schema:Abdomen + AboutPage: + '@id': schema:AboutPage + AcceptAction: + '@id': schema:AcceptAction + Accommodation: + '@id': schema:Accommodation + AccountingService: + '@id': schema:AccountingService + AchieveAction: + '@id': schema:AchieveAction + Action: + '@id': schema:Action + ActionAccessSpecification: + '@id': schema:ActionAccessSpecification + ActionStatusType: + '@id': schema:ActionStatusType + ActivateAction: + '@id': schema:ActivateAction + ActiveActionStatus: + '@id': schema:ActiveActionStatus + ActiveNotRecruiting: + '@id': schema:ActiveNotRecruiting + AddAction: + '@id': schema:AddAction + AdministrativeArea: + '@id': schema:AdministrativeArea + AdultEntertainment: + '@id': schema:AdultEntertainment + AdvertiserContentArticle: + '@id': schema:AdvertiserContentArticle + AerobicActivity: + '@id': schema:AerobicActivity + AggregateOffer: + '@id': schema:AggregateOffer + AggregateRating: + '@id': schema:AggregateRating + AgreeAction: + '@id': schema:AgreeAction + Airline: + '@id': schema:Airline + Airport: + '@id': schema:Airport + AlbumRelease: + '@id': schema:AlbumRelease + AlignmentObject: + '@id': schema:AlignmentObject + AllWheelDriveConfiguration: + '@id': schema:AllWheelDriveConfiguration + AllocateAction: + '@id': schema:AllocateAction + AmusementPark: + '@id': schema:AmusementPark + AnaerobicActivity: + '@id': schema:AnaerobicActivity + AnalysisNewsArticle: + '@id': schema:AnalysisNewsArticle + AnatomicalStructure: + '@id': schema:AnatomicalStructure + AnatomicalSystem: + '@id': schema:AnatomicalSystem + Anesthesia: + '@id': schema:Anesthesia + AnimalShelter: + '@id': schema:AnimalShelter + Answer: + '@id': schema:Answer + Apartment: + '@id': schema:Apartment + ApartmentComplex: + '@id': schema:ApartmentComplex + Appearance: + '@id': schema:Appearance + AppendAction: + '@id': schema:AppendAction + ApplyAction: + '@id': schema:ApplyAction + ApprovedIndication: + '@id': schema:ApprovedIndication + Aquarium: + '@id': schema:Aquarium + ArchiveComponent: + '@id': schema:ArchiveComponent + ArchiveOrganization: + '@id': schema:ArchiveOrganization + ArriveAction: + '@id': schema:ArriveAction + ArtGallery: + '@id': schema:ArtGallery + Artery: + '@id': schema:Artery + Article: + '@id': schema:Article + AskAction: + '@id': schema:AskAction + AskPublicNewsArticle: + '@id': schema:AskPublicNewsArticle + AssessAction: + '@id': schema:AssessAction + AssignAction: + '@id': schema:AssignAction + Atlas: + '@id': schema:Atlas + Attorney: + '@id': schema:Attorney + Audience: + '@id': schema:Audience + AudioObject: + '@id': schema:AudioObject + Audiobook: + '@id': schema:Audiobook + AudiobookFormat: + '@id': schema:AudiobookFormat + AuthenticContent: + '@id': schema:AuthenticContent + AuthoritativeLegalValue: + '@id': schema:AuthoritativeLegalValue + AuthorizeAction: + '@id': schema:AuthorizeAction + AutoBodyShop: + '@id': schema:AutoBodyShop + AutoDealer: + '@id': schema:AutoDealer + AutoPartsStore: + '@id': schema:AutoPartsStore + AutoRental: + '@id': schema:AutoRental + AutoRepair: + '@id': schema:AutoRepair + AutoWash: + '@id': schema:AutoWash + AutomatedTeller: + '@id': schema:AutomatedTeller + AutomotiveBusiness: + '@id': schema:AutomotiveBusiness + Ayurvedic: + '@id': schema:Ayurvedic + BackgroundNewsArticle: + '@id': schema:BackgroundNewsArticle + Bacteria: + '@id': schema:Bacteria + Bakery: + '@id': schema:Bakery + Balance: + '@id': schema:Balance + BankAccount: + '@id': schema:BankAccount + BankOrCreditUnion: + '@id': schema:BankOrCreditUnion + BarOrPub: + '@id': schema:BarOrPub + Barcode: + '@id': schema:Barcode + BasicIncome: + '@id': schema:BasicIncome + Beach: + '@id': schema:Beach + BeautySalon: + '@id': schema:BeautySalon + BedAndBreakfast: + '@id': schema:BedAndBreakfast + BedDetails: + '@id': schema:BedDetails + BedType: + '@id': schema:BedType + BefriendAction: + '@id': schema:BefriendAction + BenefitsHealthAspect: + '@id': schema:BenefitsHealthAspect + BikeStore: + '@id': schema:BikeStore + Blog: + '@id': schema:Blog + BlogPosting: + '@id': schema:BlogPosting + BloodTest: + '@id': schema:BloodTest + BoardingPolicyType: + '@id': schema:BoardingPolicyType + BoatReservation: + '@id': schema:BoatReservation + BoatTerminal: + '@id': schema:BoatTerminal + BoatTrip: + '@id': schema:BoatTrip + BodyOfWater: + '@id': schema:BodyOfWater + Bone: + '@id': schema:Bone + Book: + '@id': schema:Book + BookFormatType: + '@id': schema:BookFormatType + BookSeries: + '@id': schema:BookSeries + BookStore: + '@id': schema:BookStore + BookmarkAction: + '@id': schema:BookmarkAction + Boolean: + '@id': schema:Boolean + BorrowAction: + '@id': schema:BorrowAction + BowlingAlley: + '@id': schema:BowlingAlley + BrainStructure: + '@id': schema:BrainStructure + Brand: + '@id': schema:Brand + BreadcrumbList: + '@id': schema:BreadcrumbList + Brewery: + '@id': schema:Brewery + Bridge: + '@id': schema:Bridge + BroadcastChannel: + '@id': schema:BroadcastChannel + BroadcastEvent: + '@id': schema:BroadcastEvent + BroadcastFrequencySpecification: + '@id': schema:BroadcastFrequencySpecification + BroadcastRelease: + '@id': schema:BroadcastRelease + BroadcastService: + '@id': schema:BroadcastService + BrokerageAccount: + '@id': schema:BrokerageAccount + BuddhistTemple: + '@id': schema:BuddhistTemple + BusOrCoach: + '@id': schema:BusOrCoach + BusReservation: + '@id': schema:BusReservation + BusStation: + '@id': schema:BusStation + BusStop: + '@id': schema:BusStop + BusTrip: + '@id': schema:BusTrip + BusinessAudience: + '@id': schema:BusinessAudience + BusinessEntityType: + '@id': schema:BusinessEntityType + BusinessEvent: + '@id': schema:BusinessEvent + BusinessFunction: + '@id': schema:BusinessFunction + BusinessSupport: + '@id': schema:BusinessSupport + BuyAction: + '@id': schema:BuyAction + CDCPMDRecord: + '@id': schema:CDCPMDRecord + CDFormat: + '@id': schema:CDFormat + CT: + '@id': schema:CT + CableOrSatelliteService: + '@id': schema:CableOrSatelliteService + CafeOrCoffeeShop: + '@id': schema:CafeOrCoffeeShop + Campground: + '@id': schema:Campground + CampingPitch: + '@id': schema:CampingPitch + Canal: + '@id': schema:Canal + CancelAction: + '@id': schema:CancelAction + Car: + '@id': schema:Car + CarUsageType: + '@id': schema:CarUsageType + Cardiovascular: + '@id': schema:Cardiovascular + CardiovascularExam: + '@id': schema:CardiovascularExam + CaseSeries: + '@id': schema:CaseSeries + Casino: + '@id': schema:Casino + CassetteFormat: + '@id': schema:CassetteFormat + CategoryCode: + '@id': schema:CategoryCode + CategoryCodeSet: + '@id': schema:CategoryCodeSet + CatholicChurch: + '@id': schema:CatholicChurch + CausesHealthAspect: + '@id': schema:CausesHealthAspect + Cemetery: + '@id': schema:Cemetery + Chapter: + '@id': schema:Chapter + CharitableIncorporatedOrganization: + '@id': schema:CharitableIncorporatedOrganization + CheckAction: + '@id': schema:CheckAction + CheckInAction: + '@id': schema:CheckInAction + CheckOutAction: + '@id': schema:CheckOutAction + CheckoutPage: + '@id': schema:CheckoutPage + ChildCare: + '@id': schema:ChildCare + ChildrensEvent: + '@id': schema:ChildrensEvent + Chiropractic: + '@id': schema:Chiropractic + ChooseAction: + '@id': schema:ChooseAction + Church: + '@id': schema:Church + City: + '@id': schema:City + CityHall: + '@id': schema:CityHall + CivicStructure: + '@id': schema:CivicStructure + Claim: + '@id': schema:Claim + ClaimReview: + '@id': schema:ClaimReview + Class: + '@id': schema:Class + Clinician: + '@id': schema:Clinician + Clip: + '@id': schema:Clip + ClothingStore: + '@id': schema:ClothingStore + CoOp: + '@id': schema:CoOp + Code: + '@id': schema:Code + CohortStudy: + '@id': schema:CohortStudy + Collection: + '@id': schema:Collection + CollectionPage: + '@id': schema:CollectionPage + CollegeOrUniversity: + '@id': schema:CollegeOrUniversity + ComedyClub: + '@id': schema:ComedyClub + ComedyEvent: + '@id': schema:ComedyEvent + ComicCoverArt: + '@id': schema:ComicCoverArt + ComicIssue: + '@id': schema:ComicIssue + ComicSeries: + '@id': schema:ComicSeries + ComicStory: + '@id': schema:ComicStory + Comment: + '@id': schema:Comment + CommentAction: + '@id': schema:CommentAction + CommentPermission: + '@id': schema:CommentPermission + CommunicateAction: + '@id': schema:CommunicateAction + CommunityHealth: + '@id': schema:CommunityHealth + CompilationAlbum: + '@id': schema:CompilationAlbum + CompleteDataFeed: + '@id': schema:CompleteDataFeed + Completed: + '@id': schema:Completed + CompletedActionStatus: + '@id': schema:CompletedActionStatus + CompoundPriceSpecification: + '@id': schema:CompoundPriceSpecification + ComputerLanguage: + '@id': schema:ComputerLanguage + ComputerStore: + '@id': schema:ComputerStore + ConfirmAction: + '@id': schema:ConfirmAction + Consortium: + '@id': schema:Consortium + ConsumeAction: + '@id': schema:ConsumeAction + ContactPage: + '@id': schema:ContactPage + ContactPoint: + '@id': schema:ContactPoint + ContactPointOption: + '@id': schema:ContactPointOption + ContagiousnessHealthAspect: + '@id': schema:ContagiousnessHealthAspect + Continent: + '@id': schema:Continent + ControlAction: + '@id': schema:ControlAction + ConvenienceStore: + '@id': schema:ConvenienceStore + Conversation: + '@id': schema:Conversation + CookAction: + '@id': schema:CookAction + Corporation: + '@id': schema:Corporation + CorrectionComment: + '@id': schema:CorrectionComment + Country: + '@id': schema:Country + Course: + '@id': schema:Course + CourseInstance: + '@id': schema:CourseInstance + Courthouse: + '@id': schema:Courthouse + CoverArt: + '@id': schema:CoverArt + CovidTestingFacility: + '@id': schema:CovidTestingFacility + CreateAction: + '@id': schema:CreateAction + CreativeWork: + '@id': schema:CreativeWork + CreativeWorkSeason: + '@id': schema:CreativeWorkSeason + CreativeWorkSeries: + '@id': schema:CreativeWorkSeries + CreditCard: + '@id': schema:CreditCard + Crematorium: + '@id': schema:Crematorium + CriticReview: + '@id': schema:CriticReview + CrossSectional: + '@id': schema:CrossSectional + CssSelectorType: + '@id': schema:CssSelectorType + CurrencyConversionService: + '@id': schema:CurrencyConversionService + DDxElement: + '@id': schema:DDxElement + DJMixAlbum: + '@id': schema:DJMixAlbum + DVDFormat: + '@id': schema:DVDFormat + DamagedCondition: + '@id': schema:DamagedCondition + DanceEvent: + '@id': schema:DanceEvent + DanceGroup: + '@id': schema:DanceGroup + DataCatalog: + '@id': schema:DataCatalog + DataDownload: + '@id': schema:DataDownload + DataFeed: + '@id': schema:DataFeed + DataFeedItem: + '@id': schema:DataFeedItem + DataType: + '@id': schema:DataType + Dataset: + '@id': schema:Dataset + Date: + '@id': schema:Date + DateTime: + '@id': schema:DateTime + DatedMoneySpecification: + '@id': schema:DatedMoneySpecification + DayOfWeek: + '@id': schema:DayOfWeek + DaySpa: + '@id': schema:DaySpa + DeactivateAction: + '@id': schema:DeactivateAction + DefenceEstablishment: + '@id': schema:DefenceEstablishment + DefinedRegion: + '@id': schema:DefinedRegion + DefinedTerm: + '@id': schema:DefinedTerm + DefinedTermSet: + '@id': schema:DefinedTermSet + DefinitiveLegalValue: + '@id': schema:DefinitiveLegalValue + DeleteAction: + '@id': schema:DeleteAction + DeliveryChargeSpecification: + '@id': schema:DeliveryChargeSpecification + DeliveryEvent: + '@id': schema:DeliveryEvent + DeliveryMethod: + '@id': schema:DeliveryMethod + DeliveryTimeSettings: + '@id': schema:DeliveryTimeSettings + Demand: + '@id': schema:Demand + DemoAlbum: + '@id': schema:DemoAlbum + Dentist: + '@id': schema:Dentist + Dentistry: + '@id': schema:Dentistry + DepartAction: + '@id': schema:DepartAction + DepartmentStore: + '@id': schema:DepartmentStore + DepositAccount: + '@id': schema:DepositAccount + Dermatologic: + '@id': schema:Dermatologic + Dermatology: + '@id': schema:Dermatology + DiabeticDiet: + '@id': schema:DiabeticDiet + Diagnostic: + '@id': schema:Diagnostic + DiagnosticLab: + '@id': schema:DiagnosticLab + DiagnosticProcedure: + '@id': schema:DiagnosticProcedure + Diet: + '@id': schema:Diet + DietNutrition: + '@id': schema:DietNutrition + DietarySupplement: + '@id': schema:DietarySupplement + DigitalAudioTapeFormat: + '@id': schema:DigitalAudioTapeFormat + DigitalDocument: + '@id': schema:DigitalDocument + DigitalDocumentPermission: + '@id': schema:DigitalDocumentPermission + DigitalDocumentPermissionType: + '@id': schema:DigitalDocumentPermissionType + DigitalFormat: + '@id': schema:DigitalFormat + DisabilitySupport: + '@id': schema:DisabilitySupport + DisagreeAction: + '@id': schema:DisagreeAction + Discontinued: + '@id': schema:Discontinued + DiscoverAction: + '@id': schema:DiscoverAction + DiscussionForumPosting: + '@id': schema:DiscussionForumPosting + DislikeAction: + '@id': schema:DislikeAction + Distance: + '@id': schema:Distance + Distillery: + '@id': schema:Distillery + DonateAction: + '@id': schema:DonateAction + DoseSchedule: + '@id': schema:DoseSchedule + DoubleBlindedTrial: + '@id': schema:DoubleBlindedTrial + DownloadAction: + '@id': schema:DownloadAction + DrawAction: + '@id': schema:DrawAction + Drawing: + '@id': schema:Drawing + DrinkAction: + '@id': schema:DrinkAction + DriveWheelConfigurationValue: + '@id': schema:DriveWheelConfigurationValue + DrivingSchoolVehicleUsage: + '@id': schema:DrivingSchoolVehicleUsage + Drug: + '@id': schema:Drug + DrugClass: + '@id': schema:DrugClass + DrugCost: + '@id': schema:DrugCost + DrugCostCategory: + '@id': schema:DrugCostCategory + DrugLegalStatus: + '@id': schema:DrugLegalStatus + DrugPregnancyCategory: + '@id': schema:DrugPregnancyCategory + DrugPrescriptionStatus: + '@id': schema:DrugPrescriptionStatus + DrugStrength: + '@id': schema:DrugStrength + DryCleaningOrLaundry: + '@id': schema:DryCleaningOrLaundry + Duration: + '@id': schema:Duration + EBook: + '@id': schema:EBook + EPRelease: + '@id': schema:EPRelease + EUEnergyEfficiencyCategoryA: + '@id': schema:EUEnergyEfficiencyCategoryA + EUEnergyEfficiencyCategoryA1Plus: + '@id': schema:EUEnergyEfficiencyCategoryA1Plus + EUEnergyEfficiencyCategoryA2Plus: + '@id': schema:EUEnergyEfficiencyCategoryA2Plus + EUEnergyEfficiencyCategoryA3Plus: + '@id': schema:EUEnergyEfficiencyCategoryA3Plus + EUEnergyEfficiencyCategoryB: + '@id': schema:EUEnergyEfficiencyCategoryB + EUEnergyEfficiencyCategoryC: + '@id': schema:EUEnergyEfficiencyCategoryC + EUEnergyEfficiencyCategoryD: + '@id': schema:EUEnergyEfficiencyCategoryD + EUEnergyEfficiencyCategoryE: + '@id': schema:EUEnergyEfficiencyCategoryE + EUEnergyEfficiencyCategoryF: + '@id': schema:EUEnergyEfficiencyCategoryF + EUEnergyEfficiencyCategoryG: + '@id': schema:EUEnergyEfficiencyCategoryG + EUEnergyEfficiencyEnumeration: + '@id': schema:EUEnergyEfficiencyEnumeration + Ear: + '@id': schema:Ear + EatAction: + '@id': schema:EatAction + EducationEvent: + '@id': schema:EducationEvent + EducationalAudience: + '@id': schema:EducationalAudience + EducationalOccupationalCredential: + '@id': schema:EducationalOccupationalCredential + EducationalOccupationalProgram: + '@id': schema:EducationalOccupationalProgram + EducationalOrganization: + '@id': schema:EducationalOrganization + Electrician: + '@id': schema:Electrician + ElectronicsStore: + '@id': schema:ElectronicsStore + ElementarySchool: + '@id': schema:ElementarySchool + EmailMessage: + '@id': schema:EmailMessage + Embassy: + '@id': schema:Embassy + Emergency: + '@id': schema:Emergency + EmergencyService: + '@id': schema:EmergencyService + EmployeeRole: + '@id': schema:EmployeeRole + EmployerAggregateRating: + '@id': schema:EmployerAggregateRating + EmployerReview: + '@id': schema:EmployerReview + EmploymentAgency: + '@id': schema:EmploymentAgency + Endocrine: + '@id': schema:Endocrine + EndorseAction: + '@id': schema:EndorseAction + EndorsementRating: + '@id': schema:EndorsementRating + Energy: + '@id': schema:Energy + EnergyConsumptionDetails: + '@id': schema:EnergyConsumptionDetails + EnergyEfficiencyEnumeration: + '@id': schema:EnergyEfficiencyEnumeration + EnergyStarCertified: + '@id': schema:EnergyStarCertified + EnergyStarEnergyEfficiencyEnumeration: + '@id': schema:EnergyStarEnergyEfficiencyEnumeration + EngineSpecification: + '@id': schema:EngineSpecification + EnrollingByInvitation: + '@id': schema:EnrollingByInvitation + EntertainmentBusiness: + '@id': schema:EntertainmentBusiness + EntryPoint: + '@id': schema:EntryPoint + Enumeration: + '@id': schema:Enumeration + Episode: + '@id': schema:Episode + Event: + '@id': schema:Event + EventAttendanceModeEnumeration: + '@id': schema:EventAttendanceModeEnumeration + EventCancelled: + '@id': schema:EventCancelled + EventMovedOnline: + '@id': schema:EventMovedOnline + EventPostponed: + '@id': schema:EventPostponed + EventRescheduled: + '@id': schema:EventRescheduled + EventReservation: + '@id': schema:EventReservation + EventScheduled: + '@id': schema:EventScheduled + EventSeries: + '@id': schema:EventSeries + EventStatusType: + '@id': schema:EventStatusType + EventVenue: + '@id': schema:EventVenue + EvidenceLevelA: + '@id': schema:EvidenceLevelA + EvidenceLevelB: + '@id': schema:EvidenceLevelB + EvidenceLevelC: + '@id': schema:EvidenceLevelC + ExchangeRateSpecification: + '@id': schema:ExchangeRateSpecification + ExchangeRefund: + '@id': schema:ExchangeRefund + ExerciseAction: + '@id': schema:ExerciseAction + ExerciseGym: + '@id': schema:ExerciseGym + ExercisePlan: + '@id': schema:ExercisePlan + ExhibitionEvent: + '@id': schema:ExhibitionEvent + Eye: + '@id': schema:Eye + FAQPage: + '@id': schema:FAQPage + FDAcategoryA: + '@id': schema:FDAcategoryA + FDAcategoryB: + '@id': schema:FDAcategoryB + FDAcategoryC: + '@id': schema:FDAcategoryC + FDAcategoryD: + '@id': schema:FDAcategoryD + FDAcategoryX: + '@id': schema:FDAcategoryX + FDAnotEvaluated: + '@id': schema:FDAnotEvaluated + FMRadioChannel: + '@id': schema:FMRadioChannel + FailedActionStatus: + '@id': schema:FailedActionStatus + 'False': + '@id': schema:False + FastFoodRestaurant: + '@id': schema:FastFoodRestaurant + Female: + '@id': schema:Female + Festival: + '@id': schema:Festival + FilmAction: + '@id': schema:FilmAction + FinancialProduct: + '@id': schema:FinancialProduct + FinancialService: + '@id': schema:FinancialService + FindAction: + '@id': schema:FindAction + FireStation: + '@id': schema:FireStation + Flexibility: + '@id': schema:Flexibility + Flight: + '@id': schema:Flight + FlightReservation: + '@id': schema:FlightReservation + Float: + '@id': schema:Float + FloorPlan: + '@id': schema:FloorPlan + Florist: + '@id': schema:Florist + FollowAction: + '@id': schema:FollowAction + FoodEstablishment: + '@id': schema:FoodEstablishment + FoodEstablishmentReservation: + '@id': schema:FoodEstablishmentReservation + FoodEvent: + '@id': schema:FoodEvent + FoodService: + '@id': schema:FoodService + FourWheelDriveConfiguration: + '@id': schema:FourWheelDriveConfiguration + Friday: + '@id': schema:Friday + FrontWheelDriveConfiguration: + '@id': schema:FrontWheelDriveConfiguration + FullRefund: + '@id': schema:FullRefund + FundingAgency: + '@id': schema:FundingAgency + FundingScheme: + '@id': schema:FundingScheme + Fungus: + '@id': schema:Fungus + FurnitureStore: + '@id': schema:FurnitureStore + Game: + '@id': schema:Game + GamePlayMode: + '@id': schema:GamePlayMode + GameServer: + '@id': schema:GameServer + GameServerStatus: + '@id': schema:GameServerStatus + GardenStore: + '@id': schema:GardenStore + GasStation: + '@id': schema:GasStation + Gastroenterologic: + '@id': schema:Gastroenterologic + GatedResidenceCommunity: + '@id': schema:GatedResidenceCommunity + GenderType: + '@id': schema:GenderType + GeneralContractor: + '@id': schema:GeneralContractor + Genetic: + '@id': schema:Genetic + Genitourinary: + '@id': schema:Genitourinary + GeoCircle: + '@id': schema:GeoCircle + GeoCoordinates: + '@id': schema:GeoCoordinates + GeoShape: + '@id': schema:GeoShape + GeospatialGeometry: + '@id': schema:GeospatialGeometry + Geriatric: + '@id': schema:Geriatric + GiveAction: + '@id': schema:GiveAction + GlutenFreeDiet: + '@id': schema:GlutenFreeDiet + GolfCourse: + '@id': schema:GolfCourse + GovernmentBenefitsType: + '@id': schema:GovernmentBenefitsType + GovernmentBuilding: + '@id': schema:GovernmentBuilding + GovernmentOffice: + '@id': schema:GovernmentOffice + GovernmentOrganization: + '@id': schema:GovernmentOrganization + GovernmentPermit: + '@id': schema:GovernmentPermit + GovernmentService: + '@id': schema:GovernmentService + Grant: + '@id': schema:Grant + GraphicNovel: + '@id': schema:GraphicNovel + GroceryStore: + '@id': schema:GroceryStore + GroupBoardingPolicy: + '@id': schema:GroupBoardingPolicy + Guide: + '@id': schema:Guide + Gynecologic: + '@id': schema:Gynecologic + HTML: + '@id': rdf:HTML + HVACBusiness: + '@id': schema:HVACBusiness + Hackathon: + '@id': schema:Hackathon + HairSalon: + '@id': schema:HairSalon + HalalDiet: + '@id': schema:HalalDiet + Hardcover: + '@id': schema:Hardcover + HardwareStore: + '@id': schema:HardwareStore + Head: + '@id': schema:Head + HealthAndBeautyBusiness: + '@id': schema:HealthAndBeautyBusiness + HealthAspectEnumeration: + '@id': schema:HealthAspectEnumeration + HealthCare: + '@id': schema:HealthCare + HealthClub: + '@id': schema:HealthClub + HealthInsurancePlan: + '@id': schema:HealthInsurancePlan + HealthPlanCostSharingSpecification: + '@id': schema:HealthPlanCostSharingSpecification + HealthPlanFormulary: + '@id': schema:HealthPlanFormulary + HealthPlanNetwork: + '@id': schema:HealthPlanNetwork + HealthTopicContent: + '@id': schema:HealthTopicContent + HearingImpairedSupported: + '@id': schema:HearingImpairedSupported + Hematologic: + '@id': schema:Hematologic + HighSchool: + '@id': schema:HighSchool + HinduDiet: + '@id': schema:HinduDiet + HinduTemple: + '@id': schema:HinduTemple + HobbyShop: + '@id': schema:HobbyShop + HomeAndConstructionBusiness: + '@id': schema:HomeAndConstructionBusiness + HomeGoodsStore: + '@id': schema:HomeGoodsStore + Homeopathic: + '@id': schema:Homeopathic + Hospital: + '@id': schema:Hospital + Hostel: + '@id': schema:Hostel + Hotel: + '@id': schema:Hotel + HotelRoom: + '@id': schema:HotelRoom + House: + '@id': schema:House + HousePainter: + '@id': schema:HousePainter + HowOrWhereHealthAspect: + '@id': schema:HowOrWhereHealthAspect + HowTo: + '@id': schema:HowTo + HowToDirection: + '@id': schema:HowToDirection + HowToItem: + '@id': schema:HowToItem + HowToSection: + '@id': schema:HowToSection + HowToStep: + '@id': schema:HowToStep + HowToSupply: + '@id': schema:HowToSupply + HowToTip: + '@id': schema:HowToTip + HowToTool: + '@id': schema:HowToTool + IceCreamShop: + '@id': schema:IceCreamShop + IgnoreAction: + '@id': schema:IgnoreAction + ImageGallery: + '@id': schema:ImageGallery + ImageObject: + '@id': schema:ImageObject + ImagingTest: + '@id': schema:ImagingTest + InForce: + '@id': schema:InForce + InStock: + '@id': schema:InStock + InStoreOnly: + '@id': schema:InStoreOnly + IndividualProduct: + '@id': schema:IndividualProduct + Infectious: + '@id': schema:Infectious + InfectiousAgentClass: + '@id': schema:InfectiousAgentClass + InfectiousDisease: + '@id': schema:InfectiousDisease + InformAction: + '@id': schema:InformAction + InsertAction: + '@id': schema:InsertAction + InstallAction: + '@id': schema:InstallAction + InsuranceAgency: + '@id': schema:InsuranceAgency + Intangible: + '@id': schema:Intangible + Integer: + '@id': schema:Integer + InteractAction: + '@id': schema:InteractAction + InteractionCounter: + '@id': schema:InteractionCounter + InternationalTrial: + '@id': schema:InternationalTrial + InternetCafe: + '@id': schema:InternetCafe + InvestmentFund: + '@id': schema:InvestmentFund + InvestmentOrDeposit: + '@id': schema:InvestmentOrDeposit + InviteAction: + '@id': schema:InviteAction + Invoice: + '@id': schema:Invoice + ItemAvailability: + '@id': schema:ItemAvailability + ItemList: + '@id': schema:ItemList + ItemListOrderAscending: + '@id': schema:ItemListOrderAscending + ItemListOrderDescending: + '@id': schema:ItemListOrderDescending + ItemListOrderType: + '@id': schema:ItemListOrderType + ItemListUnordered: + '@id': schema:ItemListUnordered + ItemPage: + '@id': schema:ItemPage + JewelryStore: + '@id': schema:JewelryStore + JobPosting: + '@id': schema:JobPosting + JoinAction: + '@id': schema:JoinAction + Joint: + '@id': schema:Joint + KosherDiet: + '@id': schema:KosherDiet + LaboratoryScience: + '@id': schema:LaboratoryScience + LakeBodyOfWater: + '@id': schema:LakeBodyOfWater + Landform: + '@id': schema:Landform + LandmarksOrHistoricalBuildings: + '@id': schema:LandmarksOrHistoricalBuildings + Language: + '@id': schema:Language + LaserDiscFormat: + '@id': schema:LaserDiscFormat + LearningResource: + '@id': schema:LearningResource + LeaveAction: + '@id': schema:LeaveAction + LeftHandDriving: + '@id': schema:LeftHandDriving + LegalForceStatus: + '@id': schema:LegalForceStatus + LegalService: + '@id': schema:LegalService + LegalValueLevel: + '@id': schema:LegalValueLevel + Legislation: + '@id': schema:Legislation + LegislationObject: + '@id': schema:LegislationObject + LegislativeBuilding: + '@id': schema:LegislativeBuilding + LeisureTimeActivity: + '@id': schema:LeisureTimeActivity + LendAction: + '@id': schema:LendAction + Library: + '@id': schema:Library + LibrarySystem: + '@id': schema:LibrarySystem + LifestyleModification: + '@id': schema:LifestyleModification + Ligament: + '@id': schema:Ligament + LikeAction: + '@id': schema:LikeAction + LimitedAvailability: + '@id': schema:LimitedAvailability + LimitedByGuaranteeCharity: + '@id': schema:LimitedByGuaranteeCharity + LinkRole: + '@id': schema:LinkRole + LiquorStore: + '@id': schema:LiquorStore + ListItem: + '@id': schema:ListItem + ListenAction: + '@id': schema:ListenAction + LiteraryEvent: + '@id': schema:LiteraryEvent + LiveAlbum: + '@id': schema:LiveAlbum + LiveBlogPosting: + '@id': schema:LiveBlogPosting + LivingWithHealthAspect: + '@id': schema:LivingWithHealthAspect + LoanOrCredit: + '@id': schema:LoanOrCredit + LocalBusiness: + '@id': schema:LocalBusiness + LocationFeatureSpecification: + '@id': schema:LocationFeatureSpecification + LockerDelivery: + '@id': schema:LockerDelivery + Locksmith: + '@id': schema:Locksmith + LodgingBusiness: + '@id': schema:LodgingBusiness + LodgingReservation: + '@id': schema:LodgingReservation + Longitudinal: + '@id': schema:Longitudinal + LoseAction: + '@id': schema:LoseAction + LowCalorieDiet: + '@id': schema:LowCalorieDiet + LowFatDiet: + '@id': schema:LowFatDiet + LowLactoseDiet: + '@id': schema:LowLactoseDiet + LowSaltDiet: + '@id': schema:LowSaltDiet + Lung: + '@id': schema:Lung + LymphaticVessel: + '@id': schema:LymphaticVessel + MRI: + '@id': schema:MRI + Male: + '@id': schema:Male + Manuscript: + '@id': schema:Manuscript + Map: + '@id': schema:Map + MapCategoryType: + '@id': schema:MapCategoryType + MarryAction: + '@id': schema:MarryAction + Mass: + '@id': schema:Mass + MaximumDoseSchedule: + '@id': schema:MaximumDoseSchedule + MayTreatHealthAspect: + '@id': schema:MayTreatHealthAspect + MediaGallery: + '@id': schema:MediaGallery + MediaManipulationRatingEnumeration: + '@id': schema:MediaManipulationRatingEnumeration + MediaObject: + '@id': schema:MediaObject + MediaReview: + '@id': schema:MediaReview + MediaSubscription: + '@id': schema:MediaSubscription + MedicalAudience: + '@id': schema:MedicalAudience + MedicalAudienceType: + '@id': schema:MedicalAudienceType + MedicalBusiness: + '@id': schema:MedicalBusiness + MedicalCause: + '@id': schema:MedicalCause + MedicalClinic: + '@id': schema:MedicalClinic + MedicalCode: + '@id': schema:MedicalCode + MedicalCondition: + '@id': schema:MedicalCondition + MedicalConditionStage: + '@id': schema:MedicalConditionStage + MedicalContraindication: + '@id': schema:MedicalContraindication + MedicalDevice: + '@id': schema:MedicalDevice + MedicalDevicePurpose: + '@id': schema:MedicalDevicePurpose + MedicalEntity: + '@id': schema:MedicalEntity + MedicalEnumeration: + '@id': schema:MedicalEnumeration + MedicalEvidenceLevel: + '@id': schema:MedicalEvidenceLevel + MedicalGuideline: + '@id': schema:MedicalGuideline + MedicalGuidelineContraindication: + '@id': schema:MedicalGuidelineContraindication + MedicalGuidelineRecommendation: + '@id': schema:MedicalGuidelineRecommendation + MedicalImagingTechnique: + '@id': schema:MedicalImagingTechnique + MedicalIndication: + '@id': schema:MedicalIndication + MedicalIntangible: + '@id': schema:MedicalIntangible + MedicalObservationalStudy: + '@id': schema:MedicalObservationalStudy + MedicalObservationalStudyDesign: + '@id': schema:MedicalObservationalStudyDesign + MedicalOrganization: + '@id': schema:MedicalOrganization + MedicalProcedure: + '@id': schema:MedicalProcedure + MedicalProcedureType: + '@id': schema:MedicalProcedureType + MedicalResearcher: + '@id': schema:MedicalResearcher + MedicalRiskCalculator: + '@id': schema:MedicalRiskCalculator + MedicalRiskEstimator: + '@id': schema:MedicalRiskEstimator + MedicalRiskFactor: + '@id': schema:MedicalRiskFactor + MedicalRiskScore: + '@id': schema:MedicalRiskScore + MedicalScholarlyArticle: + '@id': schema:MedicalScholarlyArticle + MedicalSign: + '@id': schema:MedicalSign + MedicalSignOrSymptom: + '@id': schema:MedicalSignOrSymptom + MedicalSpecialty: + '@id': schema:MedicalSpecialty + MedicalStudy: + '@id': schema:MedicalStudy + MedicalStudyStatus: + '@id': schema:MedicalStudyStatus + MedicalSymptom: + '@id': schema:MedicalSymptom + MedicalTest: + '@id': schema:MedicalTest + MedicalTestPanel: + '@id': schema:MedicalTestPanel + MedicalTherapy: + '@id': schema:MedicalTherapy + MedicalTrial: + '@id': schema:MedicalTrial + MedicalTrialDesign: + '@id': schema:MedicalTrialDesign + MedicalWebPage: + '@id': schema:MedicalWebPage + MedicineSystem: + '@id': schema:MedicineSystem + MeetingRoom: + '@id': schema:MeetingRoom + MensClothingStore: + '@id': schema:MensClothingStore + Menu: + '@id': schema:Menu + MenuItem: + '@id': schema:MenuItem + MenuSection: + '@id': schema:MenuSection + MerchantReturnEnumeration: + '@id': schema:MerchantReturnEnumeration + MerchantReturnFiniteReturnWindow: + '@id': schema:MerchantReturnFiniteReturnWindow + MerchantReturnNotPermitted: + '@id': schema:MerchantReturnNotPermitted + MerchantReturnPolicy: + '@id': schema:MerchantReturnPolicy + MerchantReturnUnlimitedWindow: + '@id': schema:MerchantReturnUnlimitedWindow + MerchantReturnUnspecified: + '@id': schema:MerchantReturnUnspecified + Message: + '@id': schema:Message + MiddleSchool: + '@id': schema:MiddleSchool + Midwifery: + '@id': schema:Midwifery + MisconceptionsHealthAspect: + '@id': schema:MisconceptionsHealthAspect + MissingContext: + '@id': schema:MissingContext + MixedEventAttendanceMode: + '@id': schema:MixedEventAttendanceMode + MixtapeAlbum: + '@id': schema:MixtapeAlbum + MobileApplication: + '@id': schema:MobileApplication + MobilePhoneStore: + '@id': schema:MobilePhoneStore + Monday: + '@id': schema:Monday + MonetaryAmount: + '@id': schema:MonetaryAmount + MonetaryAmountDistribution: + '@id': schema:MonetaryAmountDistribution + MonetaryGrant: + '@id': schema:MonetaryGrant + MoneyTransfer: + '@id': schema:MoneyTransfer + MortgageLoan: + '@id': schema:MortgageLoan + Mosque: + '@id': schema:Mosque + Motel: + '@id': schema:Motel + Motorcycle: + '@id': schema:Motorcycle + MotorcycleDealer: + '@id': schema:MotorcycleDealer + MotorcycleRepair: + '@id': schema:MotorcycleRepair + MotorizedBicycle: + '@id': schema:MotorizedBicycle + Mountain: + '@id': schema:Mountain + MoveAction: + '@id': schema:MoveAction + Movie: + '@id': schema:Movie + MovieClip: + '@id': schema:MovieClip + MovieRentalStore: + '@id': schema:MovieRentalStore + MovieSeries: + '@id': schema:MovieSeries + MovieTheater: + '@id': schema:MovieTheater + MovingCompany: + '@id': schema:MovingCompany + MultiCenterTrial: + '@id': schema:MultiCenterTrial + MultiPlayer: + '@id': schema:MultiPlayer + MulticellularParasite: + '@id': schema:MulticellularParasite + Muscle: + '@id': schema:Muscle + Musculoskeletal: + '@id': schema:Musculoskeletal + MusculoskeletalExam: + '@id': schema:MusculoskeletalExam + Museum: + '@id': schema:Museum + MusicAlbum: + '@id': schema:MusicAlbum + MusicAlbumProductionType: + '@id': schema:MusicAlbumProductionType + MusicAlbumReleaseType: + '@id': schema:MusicAlbumReleaseType + MusicComposition: + '@id': schema:MusicComposition + MusicEvent: + '@id': schema:MusicEvent + MusicGroup: + '@id': schema:MusicGroup + MusicPlaylist: + '@id': schema:MusicPlaylist + MusicRecording: + '@id': schema:MusicRecording + MusicRelease: + '@id': schema:MusicRelease + MusicReleaseFormatType: + '@id': schema:MusicReleaseFormatType + MusicStore: + '@id': schema:MusicStore + MusicVenue: + '@id': schema:MusicVenue + MusicVideoObject: + '@id': schema:MusicVideoObject + NGO: + '@id': schema:NGO + NLNonprofitType: + '@id': schema:NLNonprofitType + NailSalon: + '@id': schema:NailSalon + Neck: + '@id': schema:Neck + Nerve: + '@id': schema:Nerve + Neuro: + '@id': schema:Neuro + Neurologic: + '@id': schema:Neurologic + NewCondition: + '@id': schema:NewCondition + NewsArticle: + '@id': schema:NewsArticle + NewsMediaOrganization: + '@id': schema:NewsMediaOrganization + Newspaper: + '@id': schema:Newspaper + NightClub: + '@id': schema:NightClub + NoninvasiveProcedure: + '@id': schema:NoninvasiveProcedure + Nonprofit501a: + '@id': schema:Nonprofit501a + Nonprofit501c1: + '@id': schema:Nonprofit501c1 + Nonprofit501c10: + '@id': schema:Nonprofit501c10 + Nonprofit501c11: + '@id': schema:Nonprofit501c11 + Nonprofit501c12: + '@id': schema:Nonprofit501c12 + Nonprofit501c13: + '@id': schema:Nonprofit501c13 + Nonprofit501c14: + '@id': schema:Nonprofit501c14 + Nonprofit501c15: + '@id': schema:Nonprofit501c15 + Nonprofit501c16: + '@id': schema:Nonprofit501c16 + Nonprofit501c17: + '@id': schema:Nonprofit501c17 + Nonprofit501c18: + '@id': schema:Nonprofit501c18 + Nonprofit501c19: + '@id': schema:Nonprofit501c19 + Nonprofit501c2: + '@id': schema:Nonprofit501c2 + Nonprofit501c20: + '@id': schema:Nonprofit501c20 + Nonprofit501c21: + '@id': schema:Nonprofit501c21 + Nonprofit501c22: + '@id': schema:Nonprofit501c22 + Nonprofit501c23: + '@id': schema:Nonprofit501c23 + Nonprofit501c24: + '@id': schema:Nonprofit501c24 + Nonprofit501c25: + '@id': schema:Nonprofit501c25 + Nonprofit501c26: + '@id': schema:Nonprofit501c26 + Nonprofit501c27: + '@id': schema:Nonprofit501c27 + Nonprofit501c28: + '@id': schema:Nonprofit501c28 + Nonprofit501c3: + '@id': schema:Nonprofit501c3 + Nonprofit501c4: + '@id': schema:Nonprofit501c4 + Nonprofit501c5: + '@id': schema:Nonprofit501c5 + Nonprofit501c6: + '@id': schema:Nonprofit501c6 + Nonprofit501c7: + '@id': schema:Nonprofit501c7 + Nonprofit501c8: + '@id': schema:Nonprofit501c8 + Nonprofit501c9: + '@id': schema:Nonprofit501c9 + Nonprofit501d: + '@id': schema:Nonprofit501d + Nonprofit501e: + '@id': schema:Nonprofit501e + Nonprofit501f: + '@id': schema:Nonprofit501f + Nonprofit501k: + '@id': schema:Nonprofit501k + Nonprofit501n: + '@id': schema:Nonprofit501n + Nonprofit501q: + '@id': schema:Nonprofit501q + Nonprofit527: + '@id': schema:Nonprofit527 + NonprofitANBI: + '@id': schema:NonprofitANBI + NonprofitSBBI: + '@id': schema:NonprofitSBBI + NonprofitType: + '@id': schema:NonprofitType + Nose: + '@id': schema:Nose + NotInForce: + '@id': schema:NotInForce + NotYetRecruiting: + '@id': schema:NotYetRecruiting + Notary: + '@id': schema:Notary + NoteDigitalDocument: + '@id': schema:NoteDigitalDocument + Number: + '@id': schema:Number + Nursing: + '@id': schema:Nursing + NutritionInformation: + '@id': schema:NutritionInformation + OTC: + '@id': schema:OTC + Observation: + '@id': schema:Observation + Observational: + '@id': schema:Observational + Obstetric: + '@id': schema:Obstetric + Occupation: + '@id': schema:Occupation + OccupationalActivity: + '@id': schema:OccupationalActivity + OccupationalTherapy: + '@id': schema:OccupationalTherapy + OceanBodyOfWater: + '@id': schema:OceanBodyOfWater + Offer: + '@id': schema:Offer + OfferCatalog: + '@id': schema:OfferCatalog + OfferForLease: + '@id': schema:OfferForLease + OfferForPurchase: + '@id': schema:OfferForPurchase + OfferItemCondition: + '@id': schema:OfferItemCondition + OfferShippingDetails: + '@id': schema:OfferShippingDetails + OfficeEquipmentStore: + '@id': schema:OfficeEquipmentStore + OfficialLegalValue: + '@id': schema:OfficialLegalValue + OfflineEventAttendanceMode: + '@id': schema:OfflineEventAttendanceMode + OfflinePermanently: + '@id': schema:OfflinePermanently + OfflineTemporarily: + '@id': schema:OfflineTemporarily + OnDemandEvent: + '@id': schema:OnDemandEvent + OnSitePickup: + '@id': schema:OnSitePickup + Oncologic: + '@id': schema:Oncologic + OneTimePayments: + '@id': schema:OneTimePayments + Online: + '@id': schema:Online + OnlineEventAttendanceMode: + '@id': schema:OnlineEventAttendanceMode + OnlineFull: + '@id': schema:OnlineFull + OnlineOnly: + '@id': schema:OnlineOnly + OpenTrial: + '@id': schema:OpenTrial + OpeningHoursSpecification: + '@id': schema:OpeningHoursSpecification + OpinionNewsArticle: + '@id': schema:OpinionNewsArticle + Optician: + '@id': schema:Optician + Optometric: + '@id': schema:Optometric + Order: + '@id': schema:Order + OrderAction: + '@id': schema:OrderAction + OrderCancelled: + '@id': schema:OrderCancelled + OrderDelivered: + '@id': schema:OrderDelivered + OrderInTransit: + '@id': schema:OrderInTransit + OrderItem: + '@id': schema:OrderItem + OrderPaymentDue: + '@id': schema:OrderPaymentDue + OrderPickupAvailable: + '@id': schema:OrderPickupAvailable + OrderProblem: + '@id': schema:OrderProblem + OrderProcessing: + '@id': schema:OrderProcessing + OrderReturned: + '@id': schema:OrderReturned + OrderStatus: + '@id': schema:OrderStatus + Organization: + '@id': schema:Organization + OrganizationRole: + '@id': schema:OrganizationRole + OrganizeAction: + '@id': schema:OrganizeAction + OriginalShippingFees: + '@id': schema:OriginalShippingFees + Osteopathic: + '@id': schema:Osteopathic + Otolaryngologic: + '@id': schema:Otolaryngologic + OutOfStock: + '@id': schema:OutOfStock + OutletStore: + '@id': schema:OutletStore + OverviewHealthAspect: + '@id': schema:OverviewHealthAspect + OwnershipInfo: + '@id': schema:OwnershipInfo + PET: + '@id': schema:PET + PaidLeave: + '@id': schema:PaidLeave + PaintAction: + '@id': schema:PaintAction + Painting: + '@id': schema:Painting + PalliativeProcedure: + '@id': schema:PalliativeProcedure + Paperback: + '@id': schema:Paperback + ParcelDelivery: + '@id': schema:ParcelDelivery + ParcelService: + '@id': schema:ParcelService + ParentAudience: + '@id': schema:ParentAudience + ParentalSupport: + '@id': schema:ParentalSupport + Park: + '@id': schema:Park + ParkingFacility: + '@id': schema:ParkingFacility + ParkingMap: + '@id': schema:ParkingMap + PartiallyInForce: + '@id': schema:PartiallyInForce + Pathology: + '@id': schema:Pathology + PathologyTest: + '@id': schema:PathologyTest + Patient: + '@id': schema:Patient + PatientExperienceHealthAspect: + '@id': schema:PatientExperienceHealthAspect + PawnShop: + '@id': schema:PawnShop + PayAction: + '@id': schema:PayAction + PaymentAutomaticallyApplied: + '@id': schema:PaymentAutomaticallyApplied + PaymentCard: + '@id': schema:PaymentCard + PaymentChargeSpecification: + '@id': schema:PaymentChargeSpecification + PaymentComplete: + '@id': schema:PaymentComplete + PaymentDeclined: + '@id': schema:PaymentDeclined + PaymentDue: + '@id': schema:PaymentDue + PaymentMethod: + '@id': schema:PaymentMethod + PaymentPastDue: + '@id': schema:PaymentPastDue + PaymentService: + '@id': schema:PaymentService + PaymentStatusType: + '@id': schema:PaymentStatusType + Pediatric: + '@id': schema:Pediatric + PeopleAudience: + '@id': schema:PeopleAudience + PercutaneousProcedure: + '@id': schema:PercutaneousProcedure + PerformAction: + '@id': schema:PerformAction + PerformanceRole: + '@id': schema:PerformanceRole + PerformingArtsTheater: + '@id': schema:PerformingArtsTheater + PerformingGroup: + '@id': schema:PerformingGroup + Periodical: + '@id': schema:Periodical + Permit: + '@id': schema:Permit + Person: + '@id': schema:Person + PetStore: + '@id': schema:PetStore + Pharmacy: + '@id': schema:Pharmacy + PharmacySpecialty: + '@id': schema:PharmacySpecialty + Photograph: + '@id': schema:Photograph + PhotographAction: + '@id': schema:PhotographAction + PhysicalActivity: + '@id': schema:PhysicalActivity + PhysicalActivityCategory: + '@id': schema:PhysicalActivityCategory + PhysicalExam: + '@id': schema:PhysicalExam + PhysicalTherapy: + '@id': schema:PhysicalTherapy + Physician: + '@id': schema:Physician + Physiotherapy: + '@id': schema:Physiotherapy + Place: + '@id': schema:Place + PlaceOfWorship: + '@id': schema:PlaceOfWorship + PlaceboControlledTrial: + '@id': schema:PlaceboControlledTrial + PlanAction: + '@id': schema:PlanAction + PlasticSurgery: + '@id': schema:PlasticSurgery + Play: + '@id': schema:Play + PlayAction: + '@id': schema:PlayAction + Playground: + '@id': schema:Playground + Plumber: + '@id': schema:Plumber + PodcastEpisode: + '@id': schema:PodcastEpisode + PodcastSeason: + '@id': schema:PodcastSeason + PodcastSeries: + '@id': schema:PodcastSeries + Podiatric: + '@id': schema:Podiatric + PoliceStation: + '@id': schema:PoliceStation + Pond: + '@id': schema:Pond + PostOffice: + '@id': schema:PostOffice + PostalAddress: + '@id': schema:PostalAddress + PostalCodeRangeSpecification: + '@id': schema:PostalCodeRangeSpecification + Poster: + '@id': schema:Poster + PotentialActionStatus: + '@id': schema:PotentialActionStatus + PreOrder: + '@id': schema:PreOrder + PreOrderAction: + '@id': schema:PreOrderAction + PreSale: + '@id': schema:PreSale + PrependAction: + '@id': schema:PrependAction + Preschool: + '@id': schema:Preschool + PrescriptionOnly: + '@id': schema:PrescriptionOnly + PresentationDigitalDocument: + '@id': schema:PresentationDigitalDocument + PreventionHealthAspect: + '@id': schema:PreventionHealthAspect + PreventionIndication: + '@id': schema:PreventionIndication + PriceSpecification: + '@id': schema:PriceSpecification + PrimaryCare: + '@id': schema:PrimaryCare + Prion: + '@id': schema:Prion + Product: + '@id': schema:Product + ProductCollection: + '@id': schema:ProductCollection + ProductGroup: + '@id': schema:ProductGroup + ProductModel: + '@id': schema:ProductModel + ProductReturnEnumeration: + '@id': schema:ProductReturnEnumeration + ProductReturnFiniteReturnWindow: + '@id': schema:ProductReturnFiniteReturnWindow + ProductReturnNotPermitted: + '@id': schema:ProductReturnNotPermitted + ProductReturnPolicy: + '@id': schema:ProductReturnPolicy + ProductReturnUnlimitedWindow: + '@id': schema:ProductReturnUnlimitedWindow + ProductReturnUnspecified: + '@id': schema:ProductReturnUnspecified + ProfessionalService: + '@id': schema:ProfessionalService + ProfilePage: + '@id': schema:ProfilePage + PrognosisHealthAspect: + '@id': schema:PrognosisHealthAspect + ProgramMembership: + '@id': schema:ProgramMembership + Project: + '@id': schema:Project + PronounceableText: + '@id': schema:PronounceableText + Property: + '@id': schema:Property + PropertyValue: + '@id': schema:PropertyValue + PropertyValueSpecification: + '@id': schema:PropertyValueSpecification + Protozoa: + '@id': schema:Protozoa + Psychiatric: + '@id': schema:Psychiatric + PsychologicalTreatment: + '@id': schema:PsychologicalTreatment + PublicHealth: + '@id': schema:PublicHealth + PublicHolidays: + '@id': schema:PublicHolidays + PublicSwimmingPool: + '@id': schema:PublicSwimmingPool + PublicToilet: + '@id': schema:PublicToilet + PublicationEvent: + '@id': schema:PublicationEvent + PublicationIssue: + '@id': schema:PublicationIssue + PublicationVolume: + '@id': schema:PublicationVolume + Pulmonary: + '@id': schema:Pulmonary + QAPage: + '@id': schema:QAPage + QualitativeValue: + '@id': schema:QualitativeValue + QuantitativeValue: + '@id': schema:QuantitativeValue + QuantitativeValueDistribution: + '@id': schema:QuantitativeValueDistribution + Quantity: + '@id': schema:Quantity + Question: + '@id': schema:Question + Quiz: + '@id': schema:Quiz + Quotation: + '@id': schema:Quotation + QuoteAction: + '@id': schema:QuoteAction + RVPark: + '@id': schema:RVPark + RadiationTherapy: + '@id': schema:RadiationTherapy + RadioBroadcastService: + '@id': schema:RadioBroadcastService + RadioChannel: + '@id': schema:RadioChannel + RadioClip: + '@id': schema:RadioClip + RadioEpisode: + '@id': schema:RadioEpisode + RadioSeason: + '@id': schema:RadioSeason + RadioSeries: + '@id': schema:RadioSeries + RadioStation: + '@id': schema:RadioStation + Radiography: + '@id': schema:Radiography + RandomizedTrial: + '@id': schema:RandomizedTrial + Rating: + '@id': schema:Rating + ReactAction: + '@id': schema:ReactAction + ReadAction: + '@id': schema:ReadAction + ReadPermission: + '@id': schema:ReadPermission + RealEstateAgent: + '@id': schema:RealEstateAgent + RealEstateListing: + '@id': schema:RealEstateListing + RearWheelDriveConfiguration: + '@id': schema:RearWheelDriveConfiguration + ReceiveAction: + '@id': schema:ReceiveAction + Recipe: + '@id': schema:Recipe + Recommendation: + '@id': schema:Recommendation + RecommendedDoseSchedule: + '@id': schema:RecommendedDoseSchedule + Recruiting: + '@id': schema:Recruiting + RecyclingCenter: + '@id': schema:RecyclingCenter + RefundTypeEnumeration: + '@id': schema:RefundTypeEnumeration + RefurbishedCondition: + '@id': schema:RefurbishedCondition + RegisterAction: + '@id': schema:RegisterAction + Registry: + '@id': schema:Registry + ReimbursementCap: + '@id': schema:ReimbursementCap + RejectAction: + '@id': schema:RejectAction + RelatedTopicsHealthAspect: + '@id': schema:RelatedTopicsHealthAspect + RemixAlbum: + '@id': schema:RemixAlbum + Renal: + '@id': schema:Renal + RentAction: + '@id': schema:RentAction + RentalCarReservation: + '@id': schema:RentalCarReservation + RentalVehicleUsage: + '@id': schema:RentalVehicleUsage + RepaymentSpecification: + '@id': schema:RepaymentSpecification + ReplaceAction: + '@id': schema:ReplaceAction + ReplyAction: + '@id': schema:ReplyAction + Report: + '@id': schema:Report + ReportageNewsArticle: + '@id': schema:ReportageNewsArticle + ReportedDoseSchedule: + '@id': schema:ReportedDoseSchedule + ResearchProject: + '@id': schema:ResearchProject + Researcher: + '@id': schema:Researcher + Reservation: + '@id': schema:Reservation + ReservationCancelled: + '@id': schema:ReservationCancelled + ReservationConfirmed: + '@id': schema:ReservationConfirmed + ReservationHold: + '@id': schema:ReservationHold + ReservationPackage: + '@id': schema:ReservationPackage + ReservationPending: + '@id': schema:ReservationPending + ReservationStatusType: + '@id': schema:ReservationStatusType + ReserveAction: + '@id': schema:ReserveAction + Reservoir: + '@id': schema:Reservoir + Residence: + '@id': schema:Residence + Resort: + '@id': schema:Resort + RespiratoryTherapy: + '@id': schema:RespiratoryTherapy + Restaurant: + '@id': schema:Restaurant + RestockingFees: + '@id': schema:RestockingFees + RestrictedDiet: + '@id': schema:RestrictedDiet + ResultsAvailable: + '@id': schema:ResultsAvailable + ResultsNotAvailable: + '@id': schema:ResultsNotAvailable + ResumeAction: + '@id': schema:ResumeAction + Retail: + '@id': schema:Retail + ReturnAction: + '@id': schema:ReturnAction + ReturnFeesEnumeration: + '@id': schema:ReturnFeesEnumeration + ReturnShippingFees: + '@id': schema:ReturnShippingFees + Review: + '@id': schema:Review + ReviewAction: + '@id': schema:ReviewAction + ReviewNewsArticle: + '@id': schema:ReviewNewsArticle + Rheumatologic: + '@id': schema:Rheumatologic + RightHandDriving: + '@id': schema:RightHandDriving + RisksOrComplicationsHealthAspect: + '@id': schema:RisksOrComplicationsHealthAspect + RiverBodyOfWater: + '@id': schema:RiverBodyOfWater + Role: + '@id': schema:Role + RoofingContractor: + '@id': schema:RoofingContractor + Room: + '@id': schema:Room + RsvpAction: + '@id': schema:RsvpAction + RsvpResponseMaybe: + '@id': schema:RsvpResponseMaybe + RsvpResponseNo: + '@id': schema:RsvpResponseNo + RsvpResponseType: + '@id': schema:RsvpResponseType + RsvpResponseYes: + '@id': schema:RsvpResponseYes + SaleEvent: + '@id': schema:SaleEvent + SatiricalArticle: + '@id': schema:SatiricalArticle + Saturday: + '@id': schema:Saturday + Schedule: + '@id': schema:Schedule + ScheduleAction: + '@id': schema:ScheduleAction + ScholarlyArticle: + '@id': schema:ScholarlyArticle + School: + '@id': schema:School + SchoolDistrict: + '@id': schema:SchoolDistrict + ScreeningEvent: + '@id': schema:ScreeningEvent + ScreeningHealthAspect: + '@id': schema:ScreeningHealthAspect + Sculpture: + '@id': schema:Sculpture + SeaBodyOfWater: + '@id': schema:SeaBodyOfWater + SearchAction: + '@id': schema:SearchAction + SearchResultsPage: + '@id': schema:SearchResultsPage + Season: + '@id': schema:Season + Seat: + '@id': schema:Seat + SeatingMap: + '@id': schema:SeatingMap + SeeDoctorHealthAspect: + '@id': schema:SeeDoctorHealthAspect + SelfCareHealthAspect: + '@id': schema:SelfCareHealthAspect + SelfStorage: + '@id': schema:SelfStorage + SellAction: + '@id': schema:SellAction + SendAction: + '@id': schema:SendAction + Series: + '@id': schema:Series + Service: + '@id': schema:Service + ServiceChannel: + '@id': schema:ServiceChannel + ShareAction: + '@id': schema:ShareAction + SheetMusic: + '@id': schema:SheetMusic + ShippingDeliveryTime: + '@id': schema:ShippingDeliveryTime + ShippingRateSettings: + '@id': schema:ShippingRateSettings + ShoeStore: + '@id': schema:ShoeStore + ShoppingCenter: + '@id': schema:ShoppingCenter + ShortStory: + '@id': schema:ShortStory + SideEffectsHealthAspect: + '@id': schema:SideEffectsHealthAspect + SingleBlindedTrial: + '@id': schema:SingleBlindedTrial + SingleCenterTrial: + '@id': schema:SingleCenterTrial + SingleFamilyResidence: + '@id': schema:SingleFamilyResidence + SinglePlayer: + '@id': schema:SinglePlayer + SingleRelease: + '@id': schema:SingleRelease + SiteNavigationElement: + '@id': schema:SiteNavigationElement + SkiResort: + '@id': schema:SkiResort + Skin: + '@id': schema:Skin + SocialEvent: + '@id': schema:SocialEvent + SocialMediaPosting: + '@id': schema:SocialMediaPosting + SoftwareApplication: + '@id': schema:SoftwareApplication + SoftwareSourceCode: + '@id': schema:SoftwareSourceCode + SoldOut: + '@id': schema:SoldOut + SomeProducts: + '@id': schema:SomeProducts + SoundtrackAlbum: + '@id': schema:SoundtrackAlbum + SpeakableSpecification: + '@id': schema:SpeakableSpecification + SpecialAnnouncement: + '@id': schema:SpecialAnnouncement + Specialty: + '@id': schema:Specialty + SpeechPathology: + '@id': schema:SpeechPathology + SpokenWordAlbum: + '@id': schema:SpokenWordAlbum + SportingGoodsStore: + '@id': schema:SportingGoodsStore + SportsActivityLocation: + '@id': schema:SportsActivityLocation + SportsClub: + '@id': schema:SportsClub + SportsEvent: + '@id': schema:SportsEvent + SportsOrganization: + '@id': schema:SportsOrganization + SportsTeam: + '@id': schema:SportsTeam + SpreadsheetDigitalDocument: + '@id': schema:SpreadsheetDigitalDocument + StadiumOrArena: + '@id': schema:StadiumOrArena + StagesHealthAspect: + '@id': schema:StagesHealthAspect + State: + '@id': schema:State + StatisticalPopulation: + '@id': schema:StatisticalPopulation + StatusEnumeration: + '@id': schema:StatusEnumeration + SteeringPositionValue: + '@id': schema:SteeringPositionValue + Store: + '@id': schema:Store + StoreCreditRefund: + '@id': schema:StoreCreditRefund + StrengthTraining: + '@id': schema:StrengthTraining + StructuredValue: + '@id': schema:StructuredValue + StudioAlbum: + '@id': schema:StudioAlbum + StupidType: + '@id': schema:StupidType + SubscribeAction: + '@id': schema:SubscribeAction + Substance: + '@id': schema:Substance + SubwayStation: + '@id': schema:SubwayStation + Suite: + '@id': schema:Suite + Sunday: + '@id': schema:Sunday + SuperficialAnatomy: + '@id': schema:SuperficialAnatomy + Surgical: + '@id': schema:Surgical + SurgicalProcedure: + '@id': schema:SurgicalProcedure + SuspendAction: + '@id': schema:SuspendAction + Suspended: + '@id': schema:Suspended + SymptomsHealthAspect: + '@id': schema:SymptomsHealthAspect + Synagogue: + '@id': schema:Synagogue + TVClip: + '@id': schema:TVClip + TVEpisode: + '@id': schema:TVEpisode + TVSeason: + '@id': schema:TVSeason + TVSeries: + '@id': schema:TVSeries + Table: + '@id': schema:Table + TakeAction: + '@id': schema:TakeAction + TattooParlor: + '@id': schema:TattooParlor + Taxi: + '@id': schema:Taxi + TaxiReservation: + '@id': schema:TaxiReservation + TaxiService: + '@id': schema:TaxiService + TaxiStand: + '@id': schema:TaxiStand + TaxiVehicleUsage: + '@id': schema:TaxiVehicleUsage + TechArticle: + '@id': schema:TechArticle + TelevisionChannel: + '@id': schema:TelevisionChannel + TelevisionStation: + '@id': schema:TelevisionStation + TennisComplex: + '@id': schema:TennisComplex + Terminated: + '@id': schema:Terminated + Text: + '@id': schema:Text + TextDigitalDocument: + '@id': schema:TextDigitalDocument + TheaterEvent: + '@id': schema:TheaterEvent + TheaterGroup: + '@id': schema:TheaterGroup + Therapeutic: + '@id': schema:Therapeutic + TherapeuticProcedure: + '@id': schema:TherapeuticProcedure + Thesis: + '@id': schema:Thesis + Thing: + '@id': schema:Thing + Throat: + '@id': schema:Throat + Thursday: + '@id': schema:Thursday + Ticket: + '@id': schema:Ticket + TieAction: + '@id': schema:TieAction + Time: + '@id': schema:Time + TipAction: + '@id': schema:TipAction + TireShop: + '@id': schema:TireShop + TollFree: + '@id': schema:TollFree + TouristAttraction: + '@id': schema:TouristAttraction + TouristDestination: + '@id': schema:TouristDestination + TouristInformationCenter: + '@id': schema:TouristInformationCenter + TouristTrip: + '@id': schema:TouristTrip + Toxicologic: + '@id': schema:Toxicologic + ToyStore: + '@id': schema:ToyStore + TrackAction: + '@id': schema:TrackAction + TradeAction: + '@id': schema:TradeAction + TraditionalChinese: + '@id': schema:TraditionalChinese + TrainReservation: + '@id': schema:TrainReservation + TrainStation: + '@id': schema:TrainStation + TrainTrip: + '@id': schema:TrainTrip + TransferAction: + '@id': schema:TransferAction + TransitMap: + '@id': schema:TransitMap + TravelAction: + '@id': schema:TravelAction + TravelAgency: + '@id': schema:TravelAgency + TreatmentIndication: + '@id': schema:TreatmentIndication + TreatmentsHealthAspect: + '@id': schema:TreatmentsHealthAspect + Trip: + '@id': schema:Trip + TripleBlindedTrial: + '@id': schema:TripleBlindedTrial + 'True': + '@id': schema:True + Tuesday: + '@id': schema:Tuesday + TypeAndQuantityNode: + '@id': schema:TypeAndQuantityNode + TypesHealthAspect: + '@id': schema:TypesHealthAspect + UKNonprofitType: + '@id': schema:UKNonprofitType + UKTrust: + '@id': schema:UKTrust + URL: + '@id': schema:URL + USNonprofitType: + '@id': schema:USNonprofitType + Ultrasound: + '@id': schema:Ultrasound + UnRegisterAction: + '@id': schema:UnRegisterAction + UnemploymentSupport: + '@id': schema:UnemploymentSupport + UnincorporatedAssociationCharity: + '@id': schema:UnincorporatedAssociationCharity + UnitPriceSpecification: + '@id': schema:UnitPriceSpecification + UnofficialLegalValue: + '@id': schema:UnofficialLegalValue + UpdateAction: + '@id': schema:UpdateAction + Urologic: + '@id': schema:Urologic + UsageOrScheduleHealthAspect: + '@id': schema:UsageOrScheduleHealthAspect + UseAction: + '@id': schema:UseAction + UsedCondition: + '@id': schema:UsedCondition + UserBlocks: + '@id': schema:UserBlocks + UserCheckins: + '@id': schema:UserCheckins + UserComments: + '@id': schema:UserComments + UserDownloads: + '@id': schema:UserDownloads + UserInteraction: + '@id': schema:UserInteraction + UserLikes: + '@id': schema:UserLikes + UserPageVisits: + '@id': schema:UserPageVisits + UserPlays: + '@id': schema:UserPlays + UserPlusOnes: + '@id': schema:UserPlusOnes + UserReview: + '@id': schema:UserReview + UserTweets: + '@id': schema:UserTweets + VeganDiet: + '@id': schema:VeganDiet + VegetarianDiet: + '@id': schema:VegetarianDiet + Vehicle: + '@id': schema:Vehicle + Vein: + '@id': schema:Vein + VenueMap: + '@id': schema:VenueMap + Vessel: + '@id': schema:Vessel + VeterinaryCare: + '@id': schema:VeterinaryCare + VideoGallery: + '@id': schema:VideoGallery + VideoGame: + '@id': schema:VideoGame + VideoGameClip: + '@id': schema:VideoGameClip + VideoGameSeries: + '@id': schema:VideoGameSeries + VideoObject: + '@id': schema:VideoObject + ViewAction: + '@id': schema:ViewAction + VinylFormat: + '@id': schema:VinylFormat + VirtualLocation: + '@id': schema:VirtualLocation + Virus: + '@id': schema:Virus + VisualArtsEvent: + '@id': schema:VisualArtsEvent + VisualArtwork: + '@id': schema:VisualArtwork + VitalSign: + '@id': schema:VitalSign + Volcano: + '@id': schema:Volcano + VoteAction: + '@id': schema:VoteAction + WPAdBlock: + '@id': schema:WPAdBlock + WPFooter: + '@id': schema:WPFooter + WPHeader: + '@id': schema:WPHeader + WPSideBar: + '@id': schema:WPSideBar + WantAction: + '@id': schema:WantAction + WarrantyPromise: + '@id': schema:WarrantyPromise + WarrantyScope: + '@id': schema:WarrantyScope + WatchAction: + '@id': schema:WatchAction + Waterfall: + '@id': schema:Waterfall + WearAction: + '@id': schema:WearAction + WebAPI: + '@id': schema:WebAPI + WebApplication: + '@id': schema:WebApplication + WebContent: + '@id': schema:WebContent + WebPage: + '@id': schema:WebPage + WebPageElement: + '@id': schema:WebPageElement + WebSite: + '@id': schema:WebSite + Wednesday: + '@id': schema:Wednesday + WesternConventional: + '@id': schema:WesternConventional + Wholesale: + '@id': schema:Wholesale + WholesaleStore: + '@id': schema:WholesaleStore + WinAction: + '@id': schema:WinAction + Winery: + '@id': schema:Winery + Withdrawn: + '@id': schema:Withdrawn + WorkBasedProgram: + '@id': schema:WorkBasedProgram + WorkersUnion: + '@id': schema:WorkersUnion + WriteAction: + '@id': schema:WriteAction + WritePermission: + '@id': schema:WritePermission + XPathType: + '@id': schema:XPathType + XRay: + '@id': schema:XRay + ZoneBoardingPolicy: + '@id': schema:ZoneBoardingPolicy + Zoo: + '@id': schema:Zoo + about: + '@id': schema:about + abridged: + '@id': schema:abridged + abstract: + '@id': schema:abstract + accelerationTime: + '@id': schema:accelerationTime + acceptedAnswer: + '@id': schema:acceptedAnswer + acceptedOffer: + '@id': schema:acceptedOffer + acceptedPaymentMethod: + '@id': schema:acceptedPaymentMethod + acceptsReservations: + '@id': schema:acceptsReservations + accessCode: + '@id': schema:accessCode + accessMode: + '@id': schema:accessMode + accessModeSufficient: + '@id': schema:accessModeSufficient + accessibilityAPI: + '@id': schema:accessibilityAPI + accessibilityControl: + '@id': schema:accessibilityControl + accessibilityFeature: + '@id': schema:accessibilityFeature + accessibilityHazard: + '@id': schema:accessibilityHazard + accessibilitySummary: + '@id': schema:accessibilitySummary + accommodationCategory: + '@id': schema:accommodationCategory + accommodationFloorPlan: + '@id': schema:accommodationFloorPlan + accountId: + '@id': schema:accountId + accountMinimumInflow: + '@id': schema:accountMinimumInflow + accountOverdraftLimit: + '@id': schema:accountOverdraftLimit + accountablePerson: + '@id': schema:accountablePerson + acquireLicensePage: + '@id': schema:acquireLicensePage + '@type': '@id' + acquiredFrom: + '@id': schema:acquiredFrom + acrissCode: + '@id': schema:acrissCode + actionAccessibilityRequirement: + '@id': schema:actionAccessibilityRequirement + actionApplication: + '@id': schema:actionApplication + actionOption: + '@id': schema:actionOption + actionPlatform: + '@id': schema:actionPlatform + actionStatus: + '@id': schema:actionStatus + actionableFeedbackPolicy: + '@id': schema:actionableFeedbackPolicy + '@type': '@id' + activeIngredient: + '@id': schema:activeIngredient + activityDuration: + '@id': schema:activityDuration + activityFrequency: + '@id': schema:activityFrequency + actor: + '@id': schema:actor + actors: + '@id': schema:actors + addOn: + '@id': schema:addOn + additionalName: + '@id': schema:additionalName + additionalNumberOfGuests: + '@id': schema:additionalNumberOfGuests + additionalProperty: + '@id': schema:additionalProperty + additionalType: + '@id': schema:additionalType + '@type': '@id' + additionalVariable: + '@id': schema:additionalVariable + address: + '@id': schema:address + addressCountry: + '@id': schema:addressCountry + addressLocality: + '@id': schema:addressLocality + addressRegion: + '@id': schema:addressRegion + administrationRoute: + '@id': schema:administrationRoute + advanceBookingRequirement: + '@id': schema:advanceBookingRequirement + adverseOutcome: + '@id': schema:adverseOutcome + affectedBy: + '@id': schema:affectedBy + affiliation: + '@id': schema:affiliation + afterMedia: + '@id': schema:afterMedia + '@type': '@id' + agent: + '@id': schema:agent + aggregateRating: + '@id': schema:aggregateRating + aircraft: + '@id': schema:aircraft + album: + '@id': schema:album + albumProductionType: + '@id': schema:albumProductionType + albumRelease: + '@id': schema:albumRelease + albumReleaseType: + '@id': schema:albumReleaseType + albums: + '@id': schema:albums + alcoholWarning: + '@id': schema:alcoholWarning + algorithm: + '@id': schema:algorithm + alignmentType: + '@id': schema:alignmentType + alternateName: + '@id': schema:alternateName + alternativeHeadline: + '@id': schema:alternativeHeadline + alumni: + '@id': schema:alumni + alumniOf: + '@id': schema:alumniOf + amenityFeature: + '@id': schema:amenityFeature + amount: + '@id': schema:amount + amountOfThisGood: + '@id': schema:amountOfThisGood + announcementLocation: + '@id': schema:announcementLocation + annualPercentageRate: + '@id': schema:annualPercentageRate + answerCount: + '@id': schema:answerCount + answerExplanation: + '@id': schema:answerExplanation + antagonist: + '@id': schema:antagonist + appearance: + '@id': schema:appearance + applicableLocation: + '@id': schema:applicableLocation + applicantLocationRequirements: + '@id': schema:applicantLocationRequirements + application: + '@id': schema:application + applicationCategory: + '@id': schema:applicationCategory + applicationContact: + '@id': schema:applicationContact + applicationDeadline: + '@id': schema:applicationDeadline + '@type': Date + applicationStartDate: + '@id': schema:applicationStartDate + '@type': Date + applicationSubCategory: + '@id': schema:applicationSubCategory + applicationSuite: + '@id': schema:applicationSuite + appliesToDeliveryMethod: + '@id': schema:appliesToDeliveryMethod + appliesToPaymentMethod: + '@id': schema:appliesToPaymentMethod + archiveHeld: + '@id': schema:archiveHeld + area: + '@id': schema:area + areaServed: + '@id': schema:areaServed + arrivalAirport: + '@id': schema:arrivalAirport + arrivalBoatTerminal: + '@id': schema:arrivalBoatTerminal + arrivalBusStop: + '@id': schema:arrivalBusStop + arrivalGate: + '@id': schema:arrivalGate + arrivalPlatform: + '@id': schema:arrivalPlatform + arrivalStation: + '@id': schema:arrivalStation + arrivalTerminal: + '@id': schema:arrivalTerminal + arrivalTime: + '@id': schema:arrivalTime + '@type': DateTime + artEdition: + '@id': schema:artEdition + artMedium: + '@id': schema:artMedium + arterialBranch: + '@id': schema:arterialBranch + artform: + '@id': schema:artform + articleBody: + '@id': schema:articleBody + articleSection: + '@id': schema:articleSection + artist: + '@id': schema:artist + artworkSurface: + '@id': schema:artworkSurface + aspect: + '@id': schema:aspect + assembly: + '@id': schema:assembly + assemblyVersion: + '@id': schema:assemblyVersion + assesses: + '@id': schema:assesses + associatedAnatomy: + '@id': schema:associatedAnatomy + associatedArticle: + '@id': schema:associatedArticle + associatedMedia: + '@id': schema:associatedMedia + associatedPathophysiology: + '@id': schema:associatedPathophysiology + athlete: + '@id': schema:athlete + attendee: + '@id': schema:attendee + attendees: + '@id': schema:attendees + audience: + '@id': schema:audience + audienceType: + '@id': schema:audienceType + audio: + '@id': schema:audio + authenticator: + '@id': schema:authenticator + author: + '@id': schema:author + availability: + '@id': schema:availability + availabilityEnds: + '@id': schema:availabilityEnds + '@type': Date + availabilityStarts: + '@id': schema:availabilityStarts + '@type': Date + availableAtOrFrom: + '@id': schema:availableAtOrFrom + availableChannel: + '@id': schema:availableChannel + availableDeliveryMethod: + '@id': schema:availableDeliveryMethod + availableFrom: + '@id': schema:availableFrom + '@type': DateTime + availableIn: + '@id': schema:availableIn + availableLanguage: + '@id': schema:availableLanguage + availableOnDevice: + '@id': schema:availableOnDevice + availableService: + '@id': schema:availableService + availableStrength: + '@id': schema:availableStrength + availableTest: + '@id': schema:availableTest + availableThrough: + '@id': schema:availableThrough + '@type': DateTime + award: + '@id': schema:award + awards: + '@id': schema:awards + awayTeam: + '@id': schema:awayTeam + backstory: + '@id': schema:backstory + bankAccountType: + '@id': schema:bankAccountType + baseSalary: + '@id': schema:baseSalary + bccRecipient: + '@id': schema:bccRecipient + bed: + '@id': schema:bed + beforeMedia: + '@id': schema:beforeMedia + '@type': '@id' + beneficiaryBank: + '@id': schema:beneficiaryBank + benefits: + '@id': schema:benefits + benefitsSummaryUrl: + '@id': schema:benefitsSummaryUrl + '@type': '@id' + bestRating: + '@id': schema:bestRating + bibo: http://purl.org/ontology/bibo/ + billingAddress: + '@id': schema:billingAddress + billingIncrement: + '@id': schema:billingIncrement + billingPeriod: + '@id': schema:billingPeriod + biomechnicalClass: + '@id': schema:biomechnicalClass + birthDate: + '@id': schema:birthDate + '@type': Date + birthPlace: + '@id': schema:birthPlace + bitrate: + '@id': schema:bitrate + blogPost: + '@id': schema:blogPost + blogPosts: + '@id': schema:blogPosts + bloodSupply: + '@id': schema:bloodSupply + boardingGroup: + '@id': schema:boardingGroup + boardingPolicy: + '@id': schema:boardingPolicy + bodyLocation: + '@id': schema:bodyLocation + bodyType: + '@id': schema:bodyType + bookEdition: + '@id': schema:bookEdition + bookFormat: + '@id': schema:bookFormat + bookingAgent: + '@id': schema:bookingAgent + bookingTime: + '@id': schema:bookingTime + '@type': DateTime + borrower: + '@id': schema:borrower + box: + '@id': schema:box + branch: + '@id': schema:branch + branchCode: + '@id': schema:branchCode + branchOf: + '@id': schema:branchOf + brand: + '@id': schema:brand + breadcrumb: + '@id': schema:breadcrumb + breastfeedingWarning: + '@id': schema:breastfeedingWarning + broadcastAffiliateOf: + '@id': schema:broadcastAffiliateOf + broadcastChannelId: + '@id': schema:broadcastChannelId + broadcastDisplayName: + '@id': schema:broadcastDisplayName + broadcastFrequency: + '@id': schema:broadcastFrequency + broadcastFrequencyValue: + '@id': schema:broadcastFrequencyValue + broadcastOfEvent: + '@id': schema:broadcastOfEvent + broadcastServiceTier: + '@id': schema:broadcastServiceTier + broadcastSignalModulation: + '@id': schema:broadcastSignalModulation + broadcastSubChannel: + '@id': schema:broadcastSubChannel + broadcastTimezone: + '@id': schema:broadcastTimezone + broadcaster: + '@id': schema:broadcaster + broker: + '@id': schema:broker + browserRequirements: + '@id': schema:browserRequirements + busName: + '@id': schema:busName + busNumber: + '@id': schema:busNumber + businessDays: + '@id': schema:businessDays + businessFunction: + '@id': schema:businessFunction + buyer: + '@id': schema:buyer + byArtist: + '@id': schema:byArtist + byDay: + '@id': schema:byDay + byMonth: + '@id': schema:byMonth + byMonthDay: + '@id': schema:byMonthDay + byMonthWeek: + '@id': schema:byMonthWeek + callSign: + '@id': schema:callSign + calories: + '@id': schema:calories + candidate: + '@id': schema:candidate + caption: + '@id': schema:caption + carbohydrateContent: + '@id': schema:carbohydrateContent + cargoVolume: + '@id': schema:cargoVolume + carrier: + '@id': schema:carrier + carrierRequirements: + '@id': schema:carrierRequirements + cashBack: + '@id': schema:cashBack + catalog: + '@id': schema:catalog + catalogNumber: + '@id': schema:catalogNumber + category: + '@id': schema:category + causeOf: + '@id': schema:causeOf + ccRecipient: + '@id': schema:ccRecipient + character: + '@id': schema:character + characterAttribute: + '@id': schema:characterAttribute + characterName: + '@id': schema:characterName + cheatCode: + '@id': schema:cheatCode + checkinTime: + '@id': schema:checkinTime + '@type': DateTime + checkoutTime: + '@id': schema:checkoutTime + '@type': DateTime + childMaxAge: + '@id': schema:childMaxAge + childMinAge: + '@id': schema:childMinAge + children: + '@id': schema:children + cholesterolContent: + '@id': schema:cholesterolContent + circle: + '@id': schema:circle + citation: + '@id': schema:citation + claimReviewed: + '@id': schema:claimReviewed + clincalPharmacology: + '@id': schema:clincalPharmacology + clinicalPharmacology: + '@id': schema:clinicalPharmacology + clipNumber: + '@id': schema:clipNumber + closes: + '@id': schema:closes + coach: + '@id': schema:coach + code: + '@id': schema:code + codeRepository: + '@id': schema:codeRepository + '@type': '@id' + codeSampleType: + '@id': schema:codeSampleType + codeValue: + '@id': schema:codeValue + codingSystem: + '@id': schema:codingSystem + colleague: + '@id': schema:colleague + '@type': '@id' + colleagues: + '@id': schema:colleagues + collection: + '@id': schema:collection + collectionSize: + '@id': schema:collectionSize + color: + '@id': schema:color + colorist: + '@id': schema:colorist + comment: + '@id': schema:comment + commentCount: + '@id': schema:commentCount + commentText: + '@id': schema:commentText + commentTime: + '@id': schema:commentTime + '@type': Date + competencyRequired: + '@id': schema:competencyRequired + competitor: + '@id': schema:competitor + composer: + '@id': schema:composer + comprisedOf: + '@id': schema:comprisedOf + conditionsOfAccess: + '@id': schema:conditionsOfAccess + confirmationNumber: + '@id': schema:confirmationNumber + connectedTo: + '@id': schema:connectedTo + constrainingProperty: + '@id': schema:constrainingProperty + contactOption: + '@id': schema:contactOption + contactPoint: + '@id': schema:contactPoint + contactPoints: + '@id': schema:contactPoints + contactType: + '@id': schema:contactType + contactlessPayment: + '@id': schema:contactlessPayment + containedIn: + '@id': schema:containedIn + containedInPlace: + '@id': schema:containedInPlace + containsPlace: + '@id': schema:containsPlace + containsSeason: + '@id': schema:containsSeason + contentLocation: + '@id': schema:contentLocation + contentRating: + '@id': schema:contentRating + contentReferenceTime: + '@id': schema:contentReferenceTime + '@type': DateTime + contentSize: + '@id': schema:contentSize + contentType: + '@id': schema:contentType + contentUrl: + '@id': schema:contentUrl + '@type': '@id' + contraindication: + '@id': schema:contraindication + contributor: + '@id': schema:contributor + cookTime: + '@id': schema:cookTime + cookingMethod: + '@id': schema:cookingMethod + copyrightHolder: + '@id': schema:copyrightHolder + copyrightYear: + '@id': schema:copyrightYear + correction: + '@id': schema:correction + correctionsPolicy: + '@id': schema:correctionsPolicy + '@type': '@id' + costCategory: + '@id': schema:costCategory + costCurrency: + '@id': schema:costCurrency + costOrigin: + '@id': schema:costOrigin + costPerUnit: + '@id': schema:costPerUnit + countriesNotSupported: + '@id': schema:countriesNotSupported + countriesSupported: + '@id': schema:countriesSupported + countryOfOrigin: + '@id': schema:countryOfOrigin + course: + '@id': schema:course + courseCode: + '@id': schema:courseCode + courseMode: + '@id': schema:courseMode + coursePrerequisites: + '@id': schema:coursePrerequisites + courseWorkload: + '@id': schema:courseWorkload + coverageEndTime: + '@id': schema:coverageEndTime + '@type': DateTime + coverageStartTime: + '@id': schema:coverageStartTime + '@type': DateTime + creativeWorkStatus: + '@id': schema:creativeWorkStatus + creator: + '@id': schema:creator + credentialCategory: + '@id': schema:credentialCategory + creditedTo: + '@id': schema:creditedTo + cssSelector: + '@id': schema:cssSelector + currenciesAccepted: + '@id': schema:currenciesAccepted + currency: + '@id': schema:currency + currentExchangeRate: + '@id': schema:currentExchangeRate + customer: + '@id': schema:customer + cutoffTime: + '@id': schema:cutoffTime + cvdCollectionDate: + '@id': schema:cvdCollectionDate + cvdFacilityCounty: + '@id': schema:cvdFacilityCounty + cvdFacilityId: + '@id': schema:cvdFacilityId + cvdNumBeds: + '@id': schema:cvdNumBeds + cvdNumBedsOcc: + '@id': schema:cvdNumBedsOcc + cvdNumC19Died: + '@id': schema:cvdNumC19Died + cvdNumC19HOPats: + '@id': schema:cvdNumC19HOPats + cvdNumC19HospPats: + '@id': schema:cvdNumC19HospPats + cvdNumC19MechVentPats: + '@id': schema:cvdNumC19MechVentPats + cvdNumC19OFMechVentPats: + '@id': schema:cvdNumC19OFMechVentPats + cvdNumC19OverflowPats: + '@id': schema:cvdNumC19OverflowPats + cvdNumICUBeds: + '@id': schema:cvdNumICUBeds + cvdNumICUBedsOcc: + '@id': schema:cvdNumICUBedsOcc + cvdNumTotBeds: + '@id': schema:cvdNumTotBeds + cvdNumVent: + '@id': schema:cvdNumVent + cvdNumVentUse: + '@id': schema:cvdNumVentUse + dataFeedElement: + '@id': schema:dataFeedElement + dataset: + '@id': schema:dataset + datasetTimeInterval: + '@id': schema:datasetTimeInterval + '@type': DateTime + dateCreated: + '@id': schema:dateCreated + '@type': Date + dateDeleted: + '@id': schema:dateDeleted + '@type': Date + dateIssued: + '@id': schema:dateIssued + '@type': Date + dateModified: + '@id': schema:dateModified + '@type': Date + datePosted: + '@id': schema:datePosted + '@type': Date + datePublished: + '@id': schema:datePublished + '@type': Date + dateRead: + '@id': schema:dateRead + '@type': Date + dateReceived: + '@id': schema:dateReceived + '@type': DateTime + dateSent: + '@id': schema:dateSent + '@type': DateTime + dateVehicleFirstRegistered: + '@id': schema:dateVehicleFirstRegistered + '@type': Date + dateline: + '@id': schema:dateline + dayOfWeek: + '@id': schema:dayOfWeek + dc: http://purl.org/dc/elements/1.1/ + dcat: http://www.w3.org/ns/dcat# + dct: http://purl.org/dc/terms/ + dcterms: http://purl.org/dc/terms/ + dctype: http://purl.org/dc/dcmitype/ + deathDate: + '@id': schema:deathDate + '@type': Date + deathPlace: + '@id': schema:deathPlace + defaultValue: + '@id': schema:defaultValue + deliveryAddress: + '@id': schema:deliveryAddress + deliveryLeadTime: + '@id': schema:deliveryLeadTime + deliveryMethod: + '@id': schema:deliveryMethod + deliveryStatus: + '@id': schema:deliveryStatus + deliveryTime: + '@id': schema:deliveryTime + department: + '@id': schema:department + departureAirport: + '@id': schema:departureAirport + departureBoatTerminal: + '@id': schema:departureBoatTerminal + departureBusStop: + '@id': schema:departureBusStop + departureGate: + '@id': schema:departureGate + departurePlatform: + '@id': schema:departurePlatform + departureStation: + '@id': schema:departureStation + departureTerminal: + '@id': schema:departureTerminal + departureTime: + '@id': schema:departureTime + '@type': DateTime + dependencies: + '@id': schema:dependencies + depth: + '@id': schema:depth + description: + '@id': schema:description + device: + '@id': schema:device + diagnosis: + '@id': schema:diagnosis + diagram: + '@id': schema:diagram + diet: + '@id': schema:diet + dietFeatures: + '@id': schema:dietFeatures + differentialDiagnosis: + '@id': schema:differentialDiagnosis + director: + '@id': schema:director + directors: + '@id': schema:directors + disambiguatingDescription: + '@id': schema:disambiguatingDescription + discount: + '@id': schema:discount + discountCode: + '@id': schema:discountCode + discountCurrency: + '@id': schema:discountCurrency + discusses: + '@id': schema:discusses + discussionUrl: + '@id': schema:discussionUrl + '@type': '@id' + diseasePreventionInfo: + '@id': schema:diseasePreventionInfo + '@type': '@id' + diseaseSpreadStatistics: + '@id': schema:diseaseSpreadStatistics + '@type': '@id' + dissolutionDate: + '@id': schema:dissolutionDate + '@type': Date + distance: + '@id': schema:distance + distinguishingSign: + '@id': schema:distinguishingSign + distribution: + '@id': schema:distribution + diversityPolicy: + '@id': schema:diversityPolicy + '@type': '@id' + diversityStaffingReport: + '@id': schema:diversityStaffingReport + '@type': '@id' + documentation: + '@id': schema:documentation + '@type': '@id' + doesNotShip: + '@id': schema:doesNotShip + domainIncludes: + '@id': schema:domainIncludes + domiciledMortgage: + '@id': schema:domiciledMortgage + doorTime: + '@id': schema:doorTime + '@type': DateTime + dosageForm: + '@id': schema:dosageForm + doseSchedule: + '@id': schema:doseSchedule + doseUnit: + '@id': schema:doseUnit + doseValue: + '@id': schema:doseValue + downPayment: + '@id': schema:downPayment + downloadUrl: + '@id': schema:downloadUrl + '@type': '@id' + downvoteCount: + '@id': schema:downvoteCount + drainsTo: + '@id': schema:drainsTo + driveWheelConfiguration: + '@id': schema:driveWheelConfiguration + dropoffLocation: + '@id': schema:dropoffLocation + dropoffTime: + '@id': schema:dropoffTime + '@type': DateTime + drug: + '@id': schema:drug + drugClass: + '@id': schema:drugClass + drugUnit: + '@id': schema:drugUnit + duns: + '@id': schema:duns + duplicateTherapy: + '@id': schema:duplicateTherapy + duration: + '@id': schema:duration + durationOfWarranty: + '@id': schema:durationOfWarranty + duringMedia: + '@id': schema:duringMedia + '@type': '@id' + earlyPrepaymentPenalty: + '@id': schema:earlyPrepaymentPenalty + editEIDR: + '@id': schema:editEIDR + editor: + '@id': schema:editor + eduQuestionType: + '@id': schema:eduQuestionType + educationRequirements: + '@id': schema:educationRequirements + educationalAlignment: + '@id': schema:educationalAlignment + educationalCredentialAwarded: + '@id': schema:educationalCredentialAwarded + educationalFramework: + '@id': schema:educationalFramework + educationalLevel: + '@id': schema:educationalLevel + educationalProgramMode: + '@id': schema:educationalProgramMode + educationalRole: + '@id': schema:educationalRole + educationalUse: + '@id': schema:educationalUse + elevation: + '@id': schema:elevation + eli: http://data.europa.eu/eli/ontology# + eligibilityToWorkRequirement: + '@id': schema:eligibilityToWorkRequirement + eligibleCustomerType: + '@id': schema:eligibleCustomerType + eligibleDuration: + '@id': schema:eligibleDuration + eligibleQuantity: + '@id': schema:eligibleQuantity + eligibleRegion: + '@id': schema:eligibleRegion + eligibleTransactionVolume: + '@id': schema:eligibleTransactionVolume + email: + '@id': schema:email + embedUrl: + '@id': schema:embedUrl + '@type': '@id' + emissionsCO2: + '@id': schema:emissionsCO2 + employee: + '@id': schema:employee + employees: + '@id': schema:employees + employerOverview: + '@id': schema:employerOverview + employmentType: + '@id': schema:employmentType + employmentUnit: + '@id': schema:employmentUnit + encodesCreativeWork: + '@id': schema:encodesCreativeWork + encoding: + '@id': schema:encoding + encodingFormat: + '@id': schema:encodingFormat + encodingType: + '@id': schema:encodingType + encodings: + '@id': schema:encodings + endDate: + '@id': schema:endDate + '@type': Date + endOffset: + '@id': schema:endOffset + endTime: + '@id': schema:endTime + '@type': DateTime + endorsee: + '@id': schema:endorsee + endorsers: + '@id': schema:endorsers + energyEfficiencyScaleMax: + '@id': schema:energyEfficiencyScaleMax + energyEfficiencyScaleMin: + '@id': schema:energyEfficiencyScaleMin + engineDisplacement: + '@id': schema:engineDisplacement + enginePower: + '@id': schema:enginePower + engineType: + '@id': schema:engineType + entertainmentBusiness: + '@id': schema:entertainmentBusiness + epidemiology: + '@id': schema:epidemiology + episode: + '@id': schema:episode + episodeNumber: + '@id': schema:episodeNumber + episodes: + '@id': schema:episodes + equal: + '@id': schema:equal + error: + '@id': schema:error + estimatedCost: + '@id': schema:estimatedCost + estimatedFlightDuration: + '@id': schema:estimatedFlightDuration + estimatedSalary: + '@id': schema:estimatedSalary + estimatesRiskOf: + '@id': schema:estimatesRiskOf + ethicsPolicy: + '@id': schema:ethicsPolicy + '@type': '@id' + event: + '@id': schema:event + eventAttendanceMode: + '@id': schema:eventAttendanceMode + eventSchedule: + '@id': schema:eventSchedule + eventStatus: + '@id': schema:eventStatus + events: + '@id': schema:events + evidenceLevel: + '@id': schema:evidenceLevel + evidenceOrigin: + '@id': schema:evidenceOrigin + exampleOfWork: + '@id': schema:exampleOfWork + exceptDate: + '@id': schema:exceptDate + '@type': Date + exchangeRateSpread: + '@id': schema:exchangeRateSpread + executableLibraryName: + '@id': schema:executableLibraryName + exerciseCourse: + '@id': schema:exerciseCourse + exercisePlan: + '@id': schema:exercisePlan + exerciseRelatedDiet: + '@id': schema:exerciseRelatedDiet + exerciseType: + '@id': schema:exerciseType + exifData: + '@id': schema:exifData + expectedArrivalFrom: + '@id': schema:expectedArrivalFrom + '@type': Date + expectedArrivalUntil: + '@id': schema:expectedArrivalUntil + '@type': Date + expectedPrognosis: + '@id': schema:expectedPrognosis + expectsAcceptanceOf: + '@id': schema:expectsAcceptanceOf + experienceRequirements: + '@id': schema:experienceRequirements + expertConsiderations: + '@id': schema:expertConsiderations + expires: + '@id': schema:expires + '@type': Date + familyName: + '@id': schema:familyName + fatContent: + '@id': schema:fatContent + faxNumber: + '@id': schema:faxNumber + featureList: + '@id': schema:featureList + feesAndCommissionsSpecification: + '@id': schema:feesAndCommissionsSpecification + fiberContent: + '@id': schema:fiberContent + fileFormat: + '@id': schema:fileFormat + fileSize: + '@id': schema:fileSize + financialAidEligible: + '@id': schema:financialAidEligible + firstAppearance: + '@id': schema:firstAppearance + firstPerformance: + '@id': schema:firstPerformance + flightDistance: + '@id': schema:flightDistance + flightNumber: + '@id': schema:flightNumber + floorLevel: + '@id': schema:floorLevel + floorLimit: + '@id': schema:floorLimit + floorSize: + '@id': schema:floorSize + foaf: http://xmlns.com/foaf/0.1/ + followee: + '@id': schema:followee + follows: + '@id': schema:follows + followup: + '@id': schema:followup + foodEstablishment: + '@id': schema:foodEstablishment + foodEvent: + '@id': schema:foodEvent + foodWarning: + '@id': schema:foodWarning + founder: + '@id': schema:founder + founders: + '@id': schema:founders + foundingDate: + '@id': schema:foundingDate + '@type': Date + foundingLocation: + '@id': schema:foundingLocation + free: + '@id': schema:free + freeShippingThreshold: + '@id': schema:freeShippingThreshold + frequency: + '@id': schema:frequency + fromLocation: + '@id': schema:fromLocation + fuelCapacity: + '@id': schema:fuelCapacity + fuelConsumption: + '@id': schema:fuelConsumption + fuelEfficiency: + '@id': schema:fuelEfficiency + fuelType: + '@id': schema:fuelType + functionalClass: + '@id': schema:functionalClass + fundedItem: + '@id': schema:fundedItem + funder: + '@id': schema:funder + game: + '@id': schema:game + gameItem: + '@id': schema:gameItem + gameLocation: + '@id': schema:gameLocation + '@type': '@id' + gamePlatform: + '@id': schema:gamePlatform + gameServer: + '@id': schema:gameServer + gameTip: + '@id': schema:gameTip + gender: + '@id': schema:gender + genre: + '@id': schema:genre + geo: + '@id': schema:geo + geoContains: + '@id': schema:geoContains + geoCoveredBy: + '@id': schema:geoCoveredBy + geoCovers: + '@id': schema:geoCovers + geoCrosses: + '@id': schema:geoCrosses + geoDisjoint: + '@id': schema:geoDisjoint + geoEquals: + '@id': schema:geoEquals + geoIntersects: + '@id': schema:geoIntersects + geoMidpoint: + '@id': schema:geoMidpoint + geoOverlaps: + '@id': schema:geoOverlaps + geoRadius: + '@id': schema:geoRadius + geoTouches: + '@id': schema:geoTouches + geoWithin: + '@id': schema:geoWithin + geographicArea: + '@id': schema:geographicArea + gettingTestedInfo: + '@id': schema:gettingTestedInfo + '@type': '@id' + givenName: + '@id': schema:givenName + globalLocationNumber: + '@id': schema:globalLocationNumber + governmentBenefitsInfo: + '@id': schema:governmentBenefitsInfo + gracePeriod: + '@id': schema:gracePeriod + grantee: + '@id': schema:grantee + greater: + '@id': schema:greater + greaterOrEqual: + '@id': schema:greaterOrEqual + gtin: + '@id': schema:gtin + gtin12: + '@id': schema:gtin12 + gtin13: + '@id': schema:gtin13 + gtin14: + '@id': schema:gtin14 + gtin8: + '@id': schema:gtin8 + guideline: + '@id': schema:guideline + guidelineDate: + '@id': schema:guidelineDate + '@type': Date + guidelineSubject: + '@id': schema:guidelineSubject + handlingTime: + '@id': schema:handlingTime + hasBroadcastChannel: + '@id': schema:hasBroadcastChannel + hasCategoryCode: + '@id': schema:hasCategoryCode + hasCourse: + '@id': schema:hasCourse + hasCourseInstance: + '@id': schema:hasCourseInstance + hasCredential: + '@id': schema:hasCredential + hasDefinedTerm: + '@id': schema:hasDefinedTerm + hasDeliveryMethod: + '@id': schema:hasDeliveryMethod + hasDigitalDocumentPermission: + '@id': schema:hasDigitalDocumentPermission + hasDriveThroughService: + '@id': schema:hasDriveThroughService + hasEnergyConsumptionDetails: + '@id': schema:hasEnergyConsumptionDetails + hasEnergyEfficiencyCategory: + '@id': schema:hasEnergyEfficiencyCategory + hasHealthAspect: + '@id': schema:hasHealthAspect + hasMap: + '@id': schema:hasMap + '@type': '@id' + hasMenu: + '@id': schema:hasMenu + hasMenuItem: + '@id': schema:hasMenuItem + hasMenuSection: + '@id': schema:hasMenuSection + hasMerchantReturnPolicy: + '@id': schema:hasMerchantReturnPolicy + hasOccupation: + '@id': schema:hasOccupation + hasOfferCatalog: + '@id': schema:hasOfferCatalog + hasPOS: + '@id': schema:hasPOS + hasPart: + '@id': schema:hasPart + hasProductReturnPolicy: + '@id': schema:hasProductReturnPolicy + hasVariant: + '@id': schema:hasVariant + headline: + '@id': schema:headline + healthCondition: + '@id': schema:healthCondition + healthPlanCoinsuranceOption: + '@id': schema:healthPlanCoinsuranceOption + healthPlanCoinsuranceRate: + '@id': schema:healthPlanCoinsuranceRate + healthPlanCopay: + '@id': schema:healthPlanCopay + healthPlanCopayOption: + '@id': schema:healthPlanCopayOption + healthPlanCostSharing: + '@id': schema:healthPlanCostSharing + healthPlanDrugOption: + '@id': schema:healthPlanDrugOption + healthPlanDrugTier: + '@id': schema:healthPlanDrugTier + healthPlanId: + '@id': schema:healthPlanId + healthPlanMarketingUrl: + '@id': schema:healthPlanMarketingUrl + '@type': '@id' + healthPlanNetworkId: + '@id': schema:healthPlanNetworkId + healthPlanNetworkTier: + '@id': schema:healthPlanNetworkTier + healthPlanPharmacyCategory: + '@id': schema:healthPlanPharmacyCategory + healthcareReportingData: + '@id': schema:healthcareReportingData + height: + '@id': schema:height + highPrice: + '@id': schema:highPrice + hiringOrganization: + '@id': schema:hiringOrganization + holdingArchive: + '@id': schema:holdingArchive + homeLocation: + '@id': schema:homeLocation + homeTeam: + '@id': schema:homeTeam + honorificPrefix: + '@id': schema:honorificPrefix + honorificSuffix: + '@id': schema:honorificSuffix + hospitalAffiliation: + '@id': schema:hospitalAffiliation + hostingOrganization: + '@id': schema:hostingOrganization + hoursAvailable: + '@id': schema:hoursAvailable + howPerformed: + '@id': schema:howPerformed + http://publications.europa.eu/mdr/eli/index.html: + '@id': http://publications.europa.eu/mdr/eli/index.html + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#Automotive_Ontology_Working_Group: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#Automotive_Ontology_Working_Group + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#FIBO: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#FIBO + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#GLEIF: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#GLEIF + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#IIT-CNR.it: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#IIT-CNR.it + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#MBZ: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#MBZ + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#Tourism: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#Tourism + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_ActionCollabClass: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_ActionCollabClass + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_DatasetClass: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_DatasetClass + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_GoodRelationsClass: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_GoodRelationsClass + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_GoodRelationsTerms: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_GoodRelationsTerms + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_LRMIClass: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_LRMIClass + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_QAStackExchange: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_QAStackExchange + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_WikiDoc: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_WikiDoc + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_bibex: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_bibex + http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_rNews: + '@id': http://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#source_rNews + httpMethod: + '@id': schema:httpMethod + https://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#STI_Accommodation_Ontology: + '@id': https://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#STI_Accommodation_Ontology + https://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#TP: + '@id': https://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#TP + https://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#TP-draws: + '@id': https://www.w3.org/wiki/WebSchemas/SchemaDotOrgSources#TP-draws + iataCode: + '@id': schema:iataCode + icaoCode: + '@id': schema:icaoCode + id: '@id' + identifier: + '@id': schema:identifier + identifyingExam: + '@id': schema:identifyingExam + identifyingTest: + '@id': schema:identifyingTest + illustrator: + '@id': schema:illustrator + image: + '@id': schema:image + '@type': '@id' + imagingTechnique: + '@id': schema:imagingTechnique + inAlbum: + '@id': schema:inAlbum + inBroadcastLineup: + '@id': schema:inBroadcastLineup + inCodeSet: + '@id': schema:inCodeSet + '@type': '@id' + inDefinedTermSet: + '@id': schema:inDefinedTermSet + '@type': '@id' + inLanguage: + '@id': schema:inLanguage + inPlaylist: + '@id': schema:inPlaylist + inProductGroupWithID: + '@id': schema:inProductGroupWithID + inStoreReturnsOffered: + '@id': schema:inStoreReturnsOffered + inSupportOf: + '@id': schema:inSupportOf + incentiveCompensation: + '@id': schema:incentiveCompensation + incentives: + '@id': schema:incentives + includedComposition: + '@id': schema:includedComposition + includedDataCatalog: + '@id': schema:includedDataCatalog + includedInDataCatalog: + '@id': schema:includedInDataCatalog + includedInHealthInsurancePlan: + '@id': schema:includedInHealthInsurancePlan + includedRiskFactor: + '@id': schema:includedRiskFactor + includesAttraction: + '@id': schema:includesAttraction + includesHealthPlanFormulary: + '@id': schema:includesHealthPlanFormulary + includesHealthPlanNetwork: + '@id': schema:includesHealthPlanNetwork + includesObject: + '@id': schema:includesObject + increasesRiskOf: + '@id': schema:increasesRiskOf + industry: + '@id': schema:industry + ineligibleRegion: + '@id': schema:ineligibleRegion + infectiousAgent: + '@id': schema:infectiousAgent + infectiousAgentClass: + '@id': schema:infectiousAgentClass + ingredients: + '@id': schema:ingredients + inker: + '@id': schema:inker + insertion: + '@id': schema:insertion + installUrl: + '@id': schema:installUrl + '@type': '@id' + instructor: + '@id': schema:instructor + instrument: + '@id': schema:instrument + intensity: + '@id': schema:intensity + interactingDrug: + '@id': schema:interactingDrug + interactionCount: + '@id': schema:interactionCount + interactionService: + '@id': schema:interactionService + interactionStatistic: + '@id': schema:interactionStatistic + interactionType: + '@id': schema:interactionType + interactivityType: + '@id': schema:interactivityType + interestRate: + '@id': schema:interestRate + inventoryLevel: + '@id': schema:inventoryLevel + inverseOf: + '@id': schema:inverseOf + isAcceptingNewPatients: + '@id': schema:isAcceptingNewPatients + isAccessibleForFree: + '@id': schema:isAccessibleForFree + isAccessoryOrSparePartFor: + '@id': schema:isAccessoryOrSparePartFor + isAvailableGenerically: + '@id': schema:isAvailableGenerically + isBasedOn: + '@id': schema:isBasedOn + '@type': '@id' + isBasedOnUrl: + '@id': schema:isBasedOnUrl + '@type': '@id' + isConsumableFor: + '@id': schema:isConsumableFor + isFamilyFriendly: + '@id': schema:isFamilyFriendly + isGift: + '@id': schema:isGift + isLiveBroadcast: + '@id': schema:isLiveBroadcast + isPartOf: + '@id': schema:isPartOf + '@type': '@id' + isPlanForApartment: + '@id': schema:isPlanForApartment + isProprietary: + '@id': schema:isProprietary + isRelatedTo: + '@id': schema:isRelatedTo + isResizable: + '@id': schema:isResizable + isSimilarTo: + '@id': schema:isSimilarTo + isUnlabelledFallback: + '@id': schema:isUnlabelledFallback + isVariantOf: + '@id': schema:isVariantOf + isbn: + '@id': schema:isbn + isicV4: + '@id': schema:isicV4 + isrcCode: + '@id': schema:isrcCode + issn: + '@id': schema:issn + issueNumber: + '@id': schema:issueNumber + issuedBy: + '@id': schema:issuedBy + issuedThrough: + '@id': schema:issuedThrough + iswcCode: + '@id': schema:iswcCode + item: + '@id': schema:item + itemCondition: + '@id': schema:itemCondition + itemListElement: + '@id': schema:itemListElement + itemListOrder: + '@id': schema:itemListOrder + itemLocation: + '@id': schema:itemLocation + itemOffered: + '@id': schema:itemOffered + itemReviewed: + '@id': schema:itemReviewed + itemShipped: + '@id': schema:itemShipped + itinerary: + '@id': schema:itinerary + jobBenefits: + '@id': schema:jobBenefits + jobImmediateStart: + '@id': schema:jobImmediateStart + jobLocation: + '@id': schema:jobLocation + jobLocationType: + '@id': schema:jobLocationType + jobStartDate: + '@id': schema:jobStartDate + jobTitle: + '@id': schema:jobTitle + jurisdiction: + '@id': schema:jurisdiction + keywords: + '@id': schema:keywords + knownVehicleDamages: + '@id': schema:knownVehicleDamages + knows: + '@id': schema:knows + knowsAbout: + '@id': schema:knowsAbout + knowsLanguage: + '@id': schema:knowsLanguage + labelDetails: + '@id': schema:labelDetails + '@type': '@id' + landlord: + '@id': schema:landlord + language: + '@id': schema:language + lastReviewed: + '@id': schema:lastReviewed + '@type': Date + latitude: + '@id': schema:latitude + layoutImage: + '@id': schema:layoutImage + '@type': '@id' + learningResourceType: + '@id': schema:learningResourceType + leaseLength: + '@id': schema:leaseLength + legalName: + '@id': schema:legalName + legalStatus: + '@id': schema:legalStatus + legislationApplies: + '@id': schema:legislationApplies + legislationChanges: + '@id': schema:legislationChanges + legislationConsolidates: + '@id': schema:legislationConsolidates + legislationDate: + '@id': schema:legislationDate + '@type': Date + legislationDateVersion: + '@id': schema:legislationDateVersion + '@type': Date + legislationIdentifier: + '@id': schema:legislationIdentifier + legislationJurisdiction: + '@id': schema:legislationJurisdiction + legislationLegalForce: + '@id': schema:legislationLegalForce + legislationLegalValue: + '@id': schema:legislationLegalValue + legislationPassedBy: + '@id': schema:legislationPassedBy + legislationResponsible: + '@id': schema:legislationResponsible + legislationTransposes: + '@id': schema:legislationTransposes + legislationType: + '@id': schema:legislationType + leiCode: + '@id': schema:leiCode + lender: + '@id': schema:lender + lesser: + '@id': schema:lesser + lesserOrEqual: + '@id': schema:lesserOrEqual + letterer: + '@id': schema:letterer + license: + '@id': schema:license + '@type': '@id' + line: + '@id': schema:line + linkRelationship: + '@id': schema:linkRelationship + liveBlogUpdate: + '@id': schema:liveBlogUpdate + loanMortgageMandateAmount: + '@id': schema:loanMortgageMandateAmount + loanPaymentAmount: + '@id': schema:loanPaymentAmount + loanPaymentFrequency: + '@id': schema:loanPaymentFrequency + loanRepaymentForm: + '@id': schema:loanRepaymentForm + loanTerm: + '@id': schema:loanTerm + loanType: + '@id': schema:loanType + location: + '@id': schema:location + locationCreated: + '@id': schema:locationCreated + lodgingUnitDescription: + '@id': schema:lodgingUnitDescription + lodgingUnitType: + '@id': schema:lodgingUnitType + logo: + '@id': schema:logo + '@type': '@id' + longitude: + '@id': schema:longitude + loser: + '@id': schema:loser + lowPrice: + '@id': schema:lowPrice + lyricist: + '@id': schema:lyricist + lyrics: + '@id': schema:lyrics + mainContentOfPage: + '@id': schema:mainContentOfPage + mainEntity: + '@id': schema:mainEntity + mainEntityOfPage: + '@id': schema:mainEntityOfPage + '@type': '@id' + maintainer: + '@id': schema:maintainer + makesOffer: + '@id': schema:makesOffer + manufacturer: + '@id': schema:manufacturer + map: + '@id': schema:map + '@type': '@id' + mapType: + '@id': schema:mapType + maps: + '@id': schema:maps + '@type': '@id' + marginOfError: + '@id': schema:marginOfError + '@type': DateTime + masthead: + '@id': schema:masthead + '@type': '@id' + material: + '@id': schema:material + materialExtent: + '@id': schema:materialExtent + maxPrice: + '@id': schema:maxPrice + maxValue: + '@id': schema:maxValue + maximumAttendeeCapacity: + '@id': schema:maximumAttendeeCapacity + maximumEnrollment: + '@id': schema:maximumEnrollment + maximumIntake: + '@id': schema:maximumIntake + maximumPhysicalAttendeeCapacity: + '@id': schema:maximumPhysicalAttendeeCapacity + maximumVirtualAttendeeCapacity: + '@id': schema:maximumVirtualAttendeeCapacity + mealService: + '@id': schema:mealService + measuredProperty: + '@id': schema:measuredProperty + measuredValue: + '@id': schema:measuredValue + measurementTechnique: + '@id': schema:measurementTechnique + mechanismOfAction: + '@id': schema:mechanismOfAction + mediaAuthenticityCategory: + '@id': schema:mediaAuthenticityCategory + median: + '@id': schema:median + medicalAudience: + '@id': schema:medicalAudience + medicalSpecialty: + '@id': schema:medicalSpecialty + medicineSystem: + '@id': schema:medicineSystem + meetsEmissionStandard: + '@id': schema:meetsEmissionStandard + member: + '@id': schema:member + memberOf: + '@id': schema:memberOf + members: + '@id': schema:members + membershipNumber: + '@id': schema:membershipNumber + membershipPointsEarned: + '@id': schema:membershipPointsEarned + memoryRequirements: + '@id': schema:memoryRequirements + mentions: + '@id': schema:mentions + menu: + '@id': schema:menu + menuAddOn: + '@id': schema:menuAddOn + merchant: + '@id': schema:merchant + merchantReturnDays: + '@id': schema:merchantReturnDays + merchantReturnLink: + '@id': schema:merchantReturnLink + '@type': '@id' + messageAttachment: + '@id': schema:messageAttachment + mileageFromOdometer: + '@id': schema:mileageFromOdometer + minPrice: + '@id': schema:minPrice + minValue: + '@id': schema:minValue + minimumPaymentDue: + '@id': schema:minimumPaymentDue + missionCoveragePrioritiesPolicy: + '@id': schema:missionCoveragePrioritiesPolicy + '@type': '@id' + model: + '@id': schema:model + modelDate: + '@id': schema:modelDate + '@type': Date + modifiedTime: + '@id': schema:modifiedTime + '@type': DateTime + monthlyMinimumRepaymentAmount: + '@id': schema:monthlyMinimumRepaymentAmount + mpn: + '@id': schema:mpn + multipleValues: + '@id': schema:multipleValues + muscleAction: + '@id': schema:muscleAction + musicArrangement: + '@id': schema:musicArrangement + musicBy: + '@id': schema:musicBy + musicCompositionForm: + '@id': schema:musicCompositionForm + musicGroupMember: + '@id': schema:musicGroupMember + musicReleaseFormat: + '@id': schema:musicReleaseFormat + musicalKey: + '@id': schema:musicalKey + naics: + '@id': schema:naics + name: + '@id': schema:name + namedPosition: + '@id': schema:namedPosition + nationality: + '@id': schema:nationality + naturalProgression: + '@id': schema:naturalProgression + nerve: + '@id': schema:nerve + nerveMotor: + '@id': schema:nerveMotor + netWorth: + '@id': schema:netWorth + newsUpdatesAndGuidelines: + '@id': schema:newsUpdatesAndGuidelines + '@type': '@id' + nextItem: + '@id': schema:nextItem + noBylinesPolicy: + '@id': schema:noBylinesPolicy + '@type': '@id' + nonEqual: + '@id': schema:nonEqual + nonProprietaryName: + '@id': schema:nonProprietaryName + nonprofitStatus: + '@id': schema:nonprofitStatus + normalRange: + '@id': schema:normalRange + nsn: + '@id': schema:nsn + numAdults: + '@id': schema:numAdults + numChildren: + '@id': schema:numChildren + numConstraints: + '@id': schema:numConstraints + numTracks: + '@id': schema:numTracks + numberOfAccommodationUnits: + '@id': schema:numberOfAccommodationUnits + numberOfAirbags: + '@id': schema:numberOfAirbags + numberOfAvailableAccommodationUnits: + '@id': schema:numberOfAvailableAccommodationUnits + numberOfAxles: + '@id': schema:numberOfAxles + numberOfBathroomsTotal: + '@id': schema:numberOfBathroomsTotal + numberOfBedrooms: + '@id': schema:numberOfBedrooms + numberOfBeds: + '@id': schema:numberOfBeds + numberOfCredits: + '@id': schema:numberOfCredits + numberOfDoors: + '@id': schema:numberOfDoors + numberOfEmployees: + '@id': schema:numberOfEmployees + numberOfEpisodes: + '@id': schema:numberOfEpisodes + numberOfForwardGears: + '@id': schema:numberOfForwardGears + numberOfFullBathrooms: + '@id': schema:numberOfFullBathrooms + numberOfItems: + '@id': schema:numberOfItems + numberOfLoanPayments: + '@id': schema:numberOfLoanPayments + numberOfPages: + '@id': schema:numberOfPages + numberOfPartialBathrooms: + '@id': schema:numberOfPartialBathrooms + numberOfPlayers: + '@id': schema:numberOfPlayers + numberOfPreviousOwners: + '@id': schema:numberOfPreviousOwners + numberOfRooms: + '@id': schema:numberOfRooms + numberOfSeasons: + '@id': schema:numberOfSeasons + numberedPosition: + '@id': schema:numberedPosition + nutrition: + '@id': schema:nutrition + object: + '@id': schema:object + observationDate: + '@id': schema:observationDate + '@type': DateTime + observedNode: + '@id': schema:observedNode + occupancy: + '@id': schema:occupancy + occupationLocation: + '@id': schema:occupationLocation + occupationalCategory: + '@id': schema:occupationalCategory + occupationalCredentialAwarded: + '@id': schema:occupationalCredentialAwarded + offerCount: + '@id': schema:offerCount + offeredBy: + '@id': schema:offeredBy + offers: + '@id': schema:offers + offersPrescriptionByMail: + '@id': schema:offersPrescriptionByMail + openingHours: + '@id': schema:openingHours + openingHoursSpecification: + '@id': schema:openingHoursSpecification + opens: + '@id': schema:opens + operatingSystem: + '@id': schema:operatingSystem + opponent: + '@id': schema:opponent + option: + '@id': schema:option + orderDate: + '@id': schema:orderDate + '@type': Date + orderDelivery: + '@id': schema:orderDelivery + orderItemNumber: + '@id': schema:orderItemNumber + orderItemStatus: + '@id': schema:orderItemStatus + orderNumber: + '@id': schema:orderNumber + orderQuantity: + '@id': schema:orderQuantity + orderStatus: + '@id': schema:orderStatus + orderedItem: + '@id': schema:orderedItem + organizer: + '@id': schema:organizer + originAddress: + '@id': schema:originAddress + originatesFrom: + '@id': schema:originatesFrom + overdosage: + '@id': schema:overdosage + owl: http://www.w3.org/2002/07/owl# + ownedFrom: + '@id': schema:ownedFrom + '@type': DateTime + ownedThrough: + '@id': schema:ownedThrough + '@type': DateTime + ownershipFundingInfo: + '@id': schema:ownershipFundingInfo + owns: + '@id': schema:owns + pageEnd: + '@id': schema:pageEnd + pageStart: + '@id': schema:pageStart + pagination: + '@id': schema:pagination + parent: + '@id': schema:parent + parentItem: + '@id': schema:parentItem + parentOrganization: + '@id': schema:parentOrganization + parentService: + '@id': schema:parentService + parents: + '@id': schema:parents + partOfEpisode: + '@id': schema:partOfEpisode + partOfInvoice: + '@id': schema:partOfInvoice + partOfOrder: + '@id': schema:partOfOrder + partOfSeason: + '@id': schema:partOfSeason + partOfSeries: + '@id': schema:partOfSeries + partOfSystem: + '@id': schema:partOfSystem + partOfTVSeries: + '@id': schema:partOfTVSeries + partOfTrip: + '@id': schema:partOfTrip + participant: + '@id': schema:participant + partySize: + '@id': schema:partySize + passengerPriorityStatus: + '@id': schema:passengerPriorityStatus + passengerSequenceNumber: + '@id': schema:passengerSequenceNumber + pathophysiology: + '@id': schema:pathophysiology + pattern: + '@id': schema:pattern + payload: + '@id': schema:payload + paymentAccepted: + '@id': schema:paymentAccepted + paymentDue: + '@id': schema:paymentDue + '@type': DateTime + paymentDueDate: + '@id': schema:paymentDueDate + '@type': Date + paymentMethod: + '@id': schema:paymentMethod + paymentMethodId: + '@id': schema:paymentMethodId + paymentStatus: + '@id': schema:paymentStatus + paymentUrl: + '@id': schema:paymentUrl + '@type': '@id' + penciler: + '@id': schema:penciler + percentile10: + '@id': schema:percentile10 + percentile25: + '@id': schema:percentile25 + percentile75: + '@id': schema:percentile75 + percentile90: + '@id': schema:percentile90 + performTime: + '@id': schema:performTime + performer: + '@id': schema:performer + performerIn: + '@id': schema:performerIn + performers: + '@id': schema:performers + permissionType: + '@id': schema:permissionType + permissions: + '@id': schema:permissions + permitAudience: + '@id': schema:permitAudience + permittedUsage: + '@id': schema:permittedUsage + petsAllowed: + '@id': schema:petsAllowed + phoneticText: + '@id': schema:phoneticText + photo: + '@id': schema:photo + photos: + '@id': schema:photos + physicalRequirement: + '@id': schema:physicalRequirement + physiologicalBenefits: + '@id': schema:physiologicalBenefits + pickupLocation: + '@id': schema:pickupLocation + pickupTime: + '@id': schema:pickupTime + '@type': DateTime + playMode: + '@id': schema:playMode + playerType: + '@id': schema:playerType + playersOnline: + '@id': schema:playersOnline + polygon: + '@id': schema:polygon + populationType: + '@id': schema:populationType + position: + '@id': schema:position + possibleComplication: + '@id': schema:possibleComplication + possibleTreatment: + '@id': schema:possibleTreatment + postOfficeBoxNumber: + '@id': schema:postOfficeBoxNumber + postOp: + '@id': schema:postOp + postalCode: + '@id': schema:postalCode + postalCodeBegin: + '@id': schema:postalCodeBegin + postalCodeEnd: + '@id': schema:postalCodeEnd + postalCodePrefix: + '@id': schema:postalCodePrefix + postalCodeRange: + '@id': schema:postalCodeRange + potentialAction: + '@id': schema:potentialAction + preOp: + '@id': schema:preOp + predecessorOf: + '@id': schema:predecessorOf + pregnancyCategory: + '@id': schema:pregnancyCategory + pregnancyWarning: + '@id': schema:pregnancyWarning + prepTime: + '@id': schema:prepTime + preparation: + '@id': schema:preparation + prescribingInfo: + '@id': schema:prescribingInfo + '@type': '@id' + prescriptionStatus: + '@id': schema:prescriptionStatus + previousItem: + '@id': schema:previousItem + previousStartDate: + '@id': schema:previousStartDate + '@type': Date + price: + '@id': schema:price + priceComponent: + '@id': schema:priceComponent + priceCurrency: + '@id': schema:priceCurrency + priceRange: + '@id': schema:priceRange + priceSpecification: + '@id': schema:priceSpecification + priceType: + '@id': schema:priceType + priceValidUntil: + '@id': schema:priceValidUntil + '@type': Date + primaryImageOfPage: + '@id': schema:primaryImageOfPage + primaryPrevention: + '@id': schema:primaryPrevention + printColumn: + '@id': schema:printColumn + printEdition: + '@id': schema:printEdition + printPage: + '@id': schema:printPage + printSection: + '@id': schema:printSection + procedure: + '@id': schema:procedure + procedureType: + '@id': schema:procedureType + processingTime: + '@id': schema:processingTime + processorRequirements: + '@id': schema:processorRequirements + producer: + '@id': schema:producer + produces: + '@id': schema:produces + productGroupID: + '@id': schema:productGroupID + productID: + '@id': schema:productID + productReturnDays: + '@id': schema:productReturnDays + productReturnLink: + '@id': schema:productReturnLink + '@type': '@id' + productSupported: + '@id': schema:productSupported + productionCompany: + '@id': schema:productionCompany + productionDate: + '@id': schema:productionDate + '@type': Date + proficiencyLevel: + '@id': schema:proficiencyLevel + programMembershipUsed: + '@id': schema:programMembershipUsed + programName: + '@id': schema:programName + programPrerequisites: + '@id': schema:programPrerequisites + programType: + '@id': schema:programType + programmingLanguage: + '@id': schema:programmingLanguage + programmingModel: + '@id': schema:programmingModel + propertyID: + '@id': schema:propertyID + proprietaryName: + '@id': schema:proprietaryName + proteinContent: + '@id': schema:proteinContent + provider: + '@id': schema:provider + providerMobility: + '@id': schema:providerMobility + providesBroadcastService: + '@id': schema:providesBroadcastService + providesService: + '@id': schema:providesService + publicAccess: + '@id': schema:publicAccess + publicTransportClosuresInfo: + '@id': schema:publicTransportClosuresInfo + '@type': '@id' + publication: + '@id': schema:publication + publicationType: + '@id': schema:publicationType + publishedBy: + '@id': schema:publishedBy + publishedOn: + '@id': schema:publishedOn + publisher: + '@id': schema:publisher + publisherImprint: + '@id': schema:publisherImprint + publishingPrinciples: + '@id': schema:publishingPrinciples + '@type': '@id' + purchaseDate: + '@id': schema:purchaseDate + '@type': Date + qualifications: + '@id': schema:qualifications + quarantineGuidelines: + '@id': schema:quarantineGuidelines + '@type': '@id' + query: + '@id': schema:query + quest: + '@id': schema:quest + question: + '@id': schema:question + rangeIncludes: + '@id': schema:rangeIncludes + ratingCount: + '@id': schema:ratingCount + ratingExplanation: + '@id': schema:ratingExplanation + ratingValue: + '@id': schema:ratingValue + rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# + rdfa: http://www.w3.org/ns/rdfa# + rdfs: http://www.w3.org/2000/01/rdf-schema# + readBy: + '@id': schema:readBy + readonlyValue: + '@id': schema:readonlyValue + realEstateAgent: + '@id': schema:realEstateAgent + recipe: + '@id': schema:recipe + recipeCategory: + '@id': schema:recipeCategory + recipeCuisine: + '@id': schema:recipeCuisine + recipeIngredient: + '@id': schema:recipeIngredient + recipeInstructions: + '@id': schema:recipeInstructions + recipeYield: + '@id': schema:recipeYield + recipient: + '@id': schema:recipient + recognizedBy: + '@id': schema:recognizedBy + recognizingAuthority: + '@id': schema:recognizingAuthority + recommendationStrength: + '@id': schema:recommendationStrength + recommendedIntake: + '@id': schema:recommendedIntake + recordLabel: + '@id': schema:recordLabel + recordedAs: + '@id': schema:recordedAs + recordedAt: + '@id': schema:recordedAt + recordedIn: + '@id': schema:recordedIn + recordingOf: + '@id': schema:recordingOf + recourseLoan: + '@id': schema:recourseLoan + referenceQuantity: + '@id': schema:referenceQuantity + referencesOrder: + '@id': schema:referencesOrder + refundType: + '@id': schema:refundType + regionDrained: + '@id': schema:regionDrained + regionsAllowed: + '@id': schema:regionsAllowed + relatedAnatomy: + '@id': schema:relatedAnatomy + relatedCondition: + '@id': schema:relatedCondition + relatedDrug: + '@id': schema:relatedDrug + relatedLink: + '@id': schema:relatedLink + '@type': '@id' + relatedStructure: + '@id': schema:relatedStructure + relatedTherapy: + '@id': schema:relatedTherapy + relatedTo: + '@id': schema:relatedTo + releaseDate: + '@id': schema:releaseDate + '@type': Date + releaseNotes: + '@id': schema:releaseNotes + releaseOf: + '@id': schema:releaseOf + releasedEvent: + '@id': schema:releasedEvent + relevantOccupation: + '@id': schema:relevantOccupation + relevantSpecialty: + '@id': schema:relevantSpecialty + remainingAttendeeCapacity: + '@id': schema:remainingAttendeeCapacity + renegotiableLoan: + '@id': schema:renegotiableLoan + repeatCount: + '@id': schema:repeatCount + repeatFrequency: + '@id': schema:repeatFrequency + repetitions: + '@id': schema:repetitions + replacee: + '@id': schema:replacee + replacer: + '@id': schema:replacer + replyToUrl: + '@id': schema:replyToUrl + '@type': '@id' + reportNumber: + '@id': schema:reportNumber + representativeOfPage: + '@id': schema:representativeOfPage + requiredCollateral: + '@id': schema:requiredCollateral + requiredGender: + '@id': schema:requiredGender + requiredMaxAge: + '@id': schema:requiredMaxAge + requiredMinAge: + '@id': schema:requiredMinAge + requiredQuantity: + '@id': schema:requiredQuantity + requirements: + '@id': schema:requirements + requiresSubscription: + '@id': schema:requiresSubscription + reservationFor: + '@id': schema:reservationFor + reservationId: + '@id': schema:reservationId + reservationStatus: + '@id': schema:reservationStatus + reservedTicket: + '@id': schema:reservedTicket + responsibilities: + '@id': schema:responsibilities + restPeriods: + '@id': schema:restPeriods + result: + '@id': 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servicePostalAddress: + '@id': schema:servicePostalAddress + serviceSmsNumber: + '@id': schema:serviceSmsNumber + serviceType: + '@id': schema:serviceType + serviceUrl: + '@id': schema:serviceUrl + '@type': '@id' + servingSize: + '@id': schema:servingSize + sharedContent: + '@id': schema:sharedContent + shippingDestination: + '@id': schema:shippingDestination + shippingDetails: + '@id': schema:shippingDetails + shippingLabel: + '@id': schema:shippingLabel + shippingRate: + '@id': schema:shippingRate + shippingSettingsLink: + '@id': schema:shippingSettingsLink + '@type': '@id' + sibling: + '@id': schema:sibling + siblings: + '@id': schema:siblings + signDetected: + '@id': schema:signDetected + signOrSymptom: + '@id': schema:signOrSymptom + significance: + '@id': schema:significance + significantLink: + '@id': schema:significantLink + '@type': '@id' + significantLinks: + '@id': schema:significantLinks + '@type': '@id' + size: + '@id': schema:size + skills: + '@id': schema:skills + skos: 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schema:superEvent + supersededBy: + '@id': schema:supersededBy + supply: + '@id': schema:supply + supplyTo: + '@id': schema:supplyTo + supportingData: + '@id': schema:supportingData + surface: + '@id': schema:surface + target: + '@id': schema:target + targetCollection: + '@id': schema:targetCollection + targetDescription: + '@id': schema:targetDescription + targetName: + '@id': schema:targetName + targetPlatform: + '@id': schema:targetPlatform + targetPopulation: + '@id': schema:targetPopulation + targetProduct: + '@id': schema:targetProduct + targetUrl: + '@id': schema:targetUrl + '@type': '@id' + taxID: + '@id': schema:taxID + teaches: + '@id': schema:teaches + telephone: + '@id': schema:telephone + temporal: + '@id': schema:temporal + temporalCoverage: + '@id': schema:temporalCoverage + termCode: + '@id': schema:termCode + termDuration: + '@id': schema:termDuration + termsOfService: + '@id': schema:termsOfService + termsPerYear: + '@id': schema:termsPerYear + text: + '@id': schema:text + textValue: + '@id': schema:textValue + thumbnail: + '@id': schema:thumbnail + thumbnailUrl: + '@id': schema:thumbnailUrl + '@type': '@id' + tickerSymbol: + '@id': schema:tickerSymbol + ticketNumber: + '@id': schema:ticketNumber + ticketToken: + '@id': schema:ticketToken + ticketedSeat: + '@id': schema:ticketedSeat + timeOfDay: + '@id': schema:timeOfDay + timeRequired: + '@id': schema:timeRequired + timeToComplete: + '@id': schema:timeToComplete + tissueSample: + '@id': schema:tissueSample + title: + '@id': schema:title + titleEIDR: + '@id': schema:titleEIDR + toLocation: + '@id': schema:toLocation + toRecipient: + '@id': schema:toRecipient + tongueWeight: + '@id': schema:tongueWeight + tool: + '@id': schema:tool + torque: + '@id': schema:torque + totalJobOpenings: + '@id': schema:totalJobOpenings + totalPaymentDue: + '@id': schema:totalPaymentDue + totalPrice: + '@id': schema:totalPrice + totalTime: + '@id': schema:totalTime + tourBookingPage: + '@id': 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schema:typeOfBed + typeOfGood: + '@id': schema:typeOfGood + typicalAgeRange: + '@id': schema:typicalAgeRange + typicalCreditsPerTerm: + '@id': schema:typicalCreditsPerTerm + typicalTest: + '@id': schema:typicalTest + underName: + '@id': schema:underName + unitCode: + '@id': schema:unitCode + unitText: + '@id': schema:unitText + unnamedSourcesPolicy: + '@id': schema:unnamedSourcesPolicy + '@type': '@id' + unsaturatedFatContent: + '@id': schema:unsaturatedFatContent + uploadDate: + '@id': schema:uploadDate + '@type': Date + upvoteCount: + '@id': schema:upvoteCount + url: + '@id': schema:url + '@type': '@id' + urlTemplate: + '@id': schema:urlTemplate + usageInfo: + '@id': schema:usageInfo + '@type': '@id' + usedToDiagnose: + '@id': schema:usedToDiagnose + userInteractionCount: + '@id': schema:userInteractionCount + usesDevice: + '@id': schema:usesDevice + usesHealthPlanIdStandard: + '@id': schema:usesHealthPlanIdStandard + validFor: + '@id': schema:validFor + validFrom: + '@id': schema:validFrom + '@type': Date + validIn: + '@id': schema:validIn + validThrough: + '@id': schema:validThrough + '@type': Date + validUntil: + '@id': schema:validUntil + '@type': Date + value: + '@id': schema:value + valueAddedTaxIncluded: + '@id': schema:valueAddedTaxIncluded + valueMaxLength: + '@id': schema:valueMaxLength + valueMinLength: + '@id': schema:valueMinLength + valueName: + '@id': schema:valueName + valuePattern: + '@id': schema:valuePattern + valueReference: + '@id': schema:valueReference + valueRequired: + '@id': schema:valueRequired + variableMeasured: + '@id': schema:variableMeasured + variablesMeasured: + '@id': schema:variablesMeasured + variantCover: + '@id': schema:variantCover + variesBy: + '@id': schema:variesBy + vatID: + '@id': schema:vatID + vehicleConfiguration: + '@id': schema:vehicleConfiguration + vehicleEngine: + '@id': schema:vehicleEngine + vehicleIdentificationNumber: + '@id': schema:vehicleIdentificationNumber + vehicleInteriorColor: + '@id': schema:vehicleInteriorColor + vehicleInteriorType: + '@id': schema:vehicleInteriorType + vehicleModelDate: + '@id': schema:vehicleModelDate + '@type': Date + vehicleSeatingCapacity: + '@id': schema:vehicleSeatingCapacity + vehicleSpecialUsage: + '@id': schema:vehicleSpecialUsage + vehicleTransmission: + '@id': schema:vehicleTransmission + vendor: + '@id': schema:vendor + verificationFactCheckingPolicy: + '@id': schema:verificationFactCheckingPolicy + '@type': '@id' + version: + '@id': schema:version + video: + '@id': schema:video + videoFormat: + '@id': schema:videoFormat + videoFrameSize: + '@id': schema:videoFrameSize + videoQuality: + '@id': schema:videoQuality + void: http://rdfs.org/ns/void# + volumeNumber: + '@id': schema:volumeNumber + warning: + '@id': schema:warning + warranty: + '@id': schema:warranty + warrantyPromise: + '@id': schema:warrantyPromise + warrantyScope: + '@id': schema:warrantyScope + webCheckinTime: + '@id': schema:webCheckinTime + '@type': DateTime + webFeed: + '@id': schema:webFeed + '@type': '@id' + weight: + '@id': schema:weight + weightTotal: + '@id': schema:weightTotal + wheelbase: + '@id': schema:wheelbase + width: + '@id': schema:width + winner: + '@id': schema:winner + wordCount: + '@id': schema:wordCount + workExample: + '@id': schema:workExample + workFeatured: + '@id': schema:workFeatured + workHours: + '@id': schema:workHours + workLocation: + '@id': schema:workLocation + workPerformed: + '@id': schema:workPerformed + workPresented: + '@id': schema:workPresented + workTranslation: + '@id': schema:workTranslation + workload: + '@id': schema:workload + worksFor: + '@id': schema:worksFor + worstRating: + '@id': schema:worstRating + xml: http://www.w3.org/XML/1998/namespace + xpath: + '@id': schema:xpath + xsd: http://www.w3.org/2001/XMLSchema# + yearBuilt: + '@id': schema:yearBuilt + yearlyRevenue: + '@id': schema:yearlyRevenue + yearsInOperation: + '@id': schema:yearsInOperation + yield: + '@id': schema:yield diff --git 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"http://contsem.unizar.es/def/sector-publico/pproc#", - "prefix": "pproc", - "title": "PPROC ontology", - "uri": "http://contsem.unizar.es/def/sector-publico/pproc" - }, - { - "namespace": "http://purl.org/ontology/prv/core#", - "prefix": "pr", - "title": "Property Reification Vocabulary", - "uri": "http://purl.org/ontology/prv/core#" - }, - { - "namespace": "http://www.loc.gov/premis/rdf/v1#", - "prefix": "premis", - "title": "PREMIS Ontology", - "uri": "http://www.loc.gov/premis/rdf/v1" - }, - { - "namespace": "http://ns.inria.fr/prissma/v2#", - "prefix": "prissma", - "title": "Presentation of Resources for Interoperable Semantic and Shareable Mobile Adaptability", - "uri": "http://ns.inria.fr/prissma/v2#" - }, - { - "namespace": "http://purl.org/spar/pro/", - "prefix": "pro", - "title": "The Publishing Roles Ontology", - "uri": "http://purl.org/spar/pro" - }, - { - "namespace": "http://www.w3.org/ns/dx/prof/", - "prefix": "prof", - "title": "Profiles Vocabulary", - "uri": "http://www.w3.org/ns/dx/prof" - }, - { - "namespace": "http://www.w3.org/ns/prov#", - "prefix": "prov", - "title": "W3C PROVenance Interchange", - "uri": "http://www.w3.org/ns/prov#" - }, - { - "namespace": "http://ns.inria.fr/provoc#", - "prefix": "provoc", - "title": "Product Vocabulary", - "uri": "http://ns.inria.fr/provoc" - }, - { - "namespace": "http://purl.org/net/provenance/ns#", - "prefix": "prv", - "title": "Provenance Vocabulary Core Ontology", - "uri": "http://purl.org/net/provenance/ns#" - }, - { - "namespace": "http://purl.org/net/provenance/types#", - "prefix": "prvt", - "title": "Provenance Vocabulary types", - "uri": "http://purl.org/net/provenance/types#" - }, - { - "namespace": "http://purl.org/spar/pso/", - "prefix": "pso", - "title": "The Publishing Status Ontology", - "uri": "http://purl.org/spar/pso" - }, - { - "namespace": "http://www.ontotext.com/proton/protontop#", - "prefix": "ptop", - "title": "PROTON (Proto Ontology), Top Module", - "uri": "http://www.ontotext.com/proton/protontop" - }, - { - "namespace": "https://vocab.eccenca.com/pubsub/", - "prefix": "pubsub", - "title": "Eccenca Publish-Subscribe Vocabulary", - "uri": "https://vocab.eccenca.com/pubsub/" - }, - { - "namespace": "http://purl.org/spar/pwo/", - "prefix": "pwo", - "title": "The Publishing Workflow Ontology", - "uri": "http://purl.org/spar/pwo" - }, - { - "namespace": "http://purl.org/linked-data/cube#", - "prefix": "qb", - "title": "The data cube vocabulary", - "uri": "http://purl.org/linked-data/cube" - }, - { - "namespace": "http://purl.org/qb4olap/cubes#", - "prefix": "qb4o", - "title": "Vocabulary for publishing OLAP data cubes", - "uri": "http://purl.org/qb4olap/cubes" - }, - { - "namespace": "http://purl.oclc.org/NET/ssnx/qu/qu#", - "prefix": "qu", - "title": "Quantity Kinds and Units", - "uri": "http://purl.oclc.org/NET/ssnx/qu/qu" - }, - { - "namespace": "http://qudt.org/schema/qudt/", - "prefix": "qudt", - "title": "Quantities, Units, Dimensions and Types", - "uri": "http://qudt.org/schema/qudt" - }, - { - "namespace": "https://w3id.org/arco/ontology/arco/", - "prefix": "r-arco", - "title": "ArCo Ontology (ArCo network)", - "uri": "https://w3id.org/arco/ontology/arco" - }, - { - "namespace": "http://guava.iis.sinica.edu.tw/r4r/", - "prefix": "r4r", - "title": "Relations for Reusing (R4R) Ontology", - "uri": "http://guava.iis.sinica.edu.tw/r4r" - }, - { - "namespace": "http://www.w3.org/ns/radion#", - "prefix": "radion", - "title": "Repository Asset Distribution", - "uri": "http://www.w3.org/ns/radion#" - }, - { - "namespace": "http://iais.fraunhofer.de/vocabs/rami#", - "prefix": "rami", - "title": "rami - Reference Architecture Model", - "uri": "https://w3id.org/i40/rami/" - }, - { - "namespace": "http://purl.org/NET/raul#", - "prefix": "raul", - "title": "RAUL Vocabulary", - "uri": "http://vocab.deri.ie/raul" - }, - { - "namespace": "http://rdvocab.info/uri/schema/FRBRentitiesRDA/", - "prefix": "rdafrbr", - "title": "FRBR Entities for RDA", - "uri": "http://rdvocab.info/uri/schema/FRBRentitiesRDA" - }, - { - "namespace": "http://rdvocab.info/Elements/", - "prefix": "rdag1", - "title": "RDA Group 1 Elements", - "uri": "http://rdvocab.info/Elements" - }, - { - "namespace": "http://rdvocab.info/ElementsGr2/", - "prefix": "rdag2", - "title": "RDA Group 2 Elements", - "uri": "http://rdvocab.info/ElementsGr2" - }, - { - "namespace": "http://rdvocab.info/ElementsGr3/", - "prefix": "rdag3", - "title": "RDA Group 3 Elements", - "uri": "http://rdvocab.info/ElementsGr3" - }, - { - "namespace": "http://rdvocab.info/RDARelationshipsWEMI/", - "prefix": "rdarel", - "title": "RDA Relationships for Works, Expressions, Manifestations, Items", - "uri": "http://rdvocab.info/RDARelationshipsWEMI" - }, - { - "namespace": "http://metadataregistry.org/uri/schema/RDARelationshipsGR2/", - "prefix": "rdarel2", - "title": "RDA Relationships GR2", - "uri": "http://metadataregistry.org/uri/schema/RDARelationshipsGR2" - }, - { - "namespace": "http://rdvocab.info/roles/", - "prefix": "rdarole", - "title": "RDA Roles", - "uri": "http://rdvocab.info/roles" - }, - { - "namespace": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", - "prefix": "rdf", - "title": "The RDF Concepts Vocabulary", - "uri": "http://www.w3.org/1999/02/22-rdf-syntax-ns#" - }, - { - "namespace": "http://www.w3.org/ns/rdfa#", - "prefix": "rdfa", - "title": "RDFa Vocabulary for Term and Prefix Assignment, and for Processor Graph Reporting", - "uri": "http://www.w3.org/ns/rdfa#" - }, - { - "namespace": "http://www.w3.org/2004/03/trix/rdfg-1/", - "prefix": "rdfg", - "title": "Graph", - "uri": "http://www.w3.org/2004/03/trix/rdfg-1/" - }, - { - "namespace": "https://w3id.org/rdfp/", - "prefix": "rdfp", - "title": "The RDF Presentation ontology", - "uri": "https://w3id.org/rdfp/" - }, - { - "namespace": "http://www.w3.org/2000/01/rdf-schema#", - "prefix": "rdfs", - "title": "The RDF Schema vocabulary", - "uri": "http://www.w3.org/2000/01/rdf-schema#" - }, - { - "namespace": "http://purl.org/ontology/rec/core#", - "prefix": "rec", - "title": "Recommendation Ontology", - "uri": "http://purl.org/ontology/rec/core#" - }, - { - "namespace": "http://www.w3.org/2001/02pd/rec54#", - "prefix": "rec54", - "title": "Model of the W3C Process", - "uri": "http://www.w3.org/2001/02pd/rec54#" - }, - { - "namespace": "http://purl.org/reco#", - "prefix": "reco", - "title": "RECommendations Ontology", - "uri": "http://purl.org/reco#" - }, - { - "namespace": "http://reegle.info/schema#", - "prefix": "reegle", - "title": "Renewable Energy and Energy Efficiency", - "uri": "http://reegle.info/schema" - }, - { - "namespace": "http://purl.org/vocab/relationship/", - "prefix": "rel", - "title": "Relationship", - "uri": "http://purl.org/vocab/relationship/" - }, - { - "namespace": "http://www.purl.org/net/remetca#", - "prefix": "remetca", - "title": "ReMetCa Ontology", - "uri": "http://www.purl.org/net/remetca#" - }, - { - "namespace": "http://purl.org/stuff/rev#", - "prefix": "rev", - "title": "Review Vocabulary", - "uri": "http://purl.org/stuff/rev#" - }, - { - "namespace": "http://persistence.uni-leipzig.org/nlp2rdf/ontologies/rlog#", - "prefix": "rlog", - "title": "RDF Logging Ontology", - "uri": "http://persistence.uni-leipzig.org/nlp2rdf/ontologies/rlog#" - }, - { - "namespace": "http://purl.org/wf4ever/ro#", - "prefix": "ro", - "title": "The Research Object Ontology", - "uri": "http://purl.org/wf4ever/ro" - }, - { - "namespace": "http://vocab.deri.ie/rooms#", - "prefix": "rooms", - "title": "Buildings and Rooms Vocabulary", - "uri": "http://vocab.deri.ie/rooms" - }, - { - "namespace": "http://www.w3.org/ns/regorg#", - "prefix": "rov", - "title": "Registered Organization Vocabulary", - "uri": "http://www.w3.org/ns/regorg" - }, - { - "namespace": "http://www.w3.org/ns/r2rml#", - "prefix": "rr", - "title": "RDB to RDF Mapping Language Schema", - "uri": "http://www.w3.org/ns/r2rml#" - }, - { - "namespace": "http://softeng.polito.it/rsctx#", - "prefix": "rsctx", - "title": "Recommender System Context", - "uri": "http://softeng.polito.it/rsctx" - }, - { - "namespace": "http://purl.org/rss/1.0/", - "prefix": "rss", - "title": "Vocabulary for Rich Site Summary (RSS) 1.0", - "uri": "http://purl.org/rss/1.0" - }, - { - "namespace": "http://purl.org/imbi/ru-meta.owl#", - "prefix": "ru", - "title": "Representational Units Metadata Ontology", - "uri": "http://purl.org/imbi/ru-meta.owl" - }, - { - "namespace": "http://rdfunit.aksw.org/ns/core#", - "prefix": "ruto", - "title": "Test-Driven Data Debugging Ontology", - "uri": "http://rdfunit.aksw.org/ns/core#" - }, - { - "namespace": "http://ns.inria.fr/s4ac/v2#", - "prefix": "s4ac", - "title": "Social Semantic SPARQL Security For Access Control Ontology", - "uri": "http://ns.inria.fr/s4ac/v2" - }, - { - "namespace": "https://w3id.org/def/saref4bldg#", - "prefix": "s4bldg", - "title": "SAREF extension for building devices", - "uri": "https://w3id.org/def/saref4bldg" - }, - { - "namespace": "https://w3id.org/saref4ee#", - "prefix": "s4ee", - "title": "SAREF4EE: the EEbus/Energy@home extension of SAREF", - "uri": "https://w3id.org/saref4ee" - }, - { - "namespace": "http://dati.san.beniculturali.it/SAN/", - "prefix": "san-lod", - "title": "SAN Ontologia", - "uri": "http://dati.san.beniculturali.it/SAN/" - }, - { - "namespace": "https://w3id.org/saref#", - "prefix": "saref", - "title": "SAREF: the Smart Appliances REFerence ontology", - "uri": "https://w3id.org/saref" - }, - { - "namespace": "https://w3id.org/def/saref4agri#", - "prefix": "saref4agri", - "title": "SAREF extension for Agriculture", - "uri": "https://w3id.org/def/saref4agri" - }, - { - "namespace": "http://purl.org/saws/ontology#", - "prefix": "saws", - "title": "Sharing Ancient Wisdoms Ontology", - "uri": "http://purl.org/saws/ontology" - }, - { - "namespace": "http://schema.org/", - "prefix": "schema", - "title": "Schema.org vocabulary", - "uri": "http://schema.org/" - }, - { - "namespace": "http://lod.taxonconcept.org/ontology/sci_people.owl#", - "prefix": "scip", - "title": "Scientific People Ontology", - "uri": "http://lod.taxonconcept.org/ontology/sci_people.owl" - }, - { - "namespace": "http://purl.org/spar/scoro/", - "prefix": "scoro", - "title": "Scholarly Contributions and Roles Ontology", - "uri": "http://purl.org/spar/scoro/" - }, - { - "namespace": "http://rdfs.org/scot/ns#", - "prefix": "scot", - "title": "Social Semantic Cloud of Tags", - "uri": "http://rdfs.org/scot/ns#" - }, - { - "namespace": "http://purl.org/NET/scovo#", - "prefix": "scovo", - "title": "The Statistical Core Vocabulary", - "uri": "http://vocab.deri.ie/scovo" - }, - { - "namespace": "http://purl.org/NET/schema-org-csv#", - "prefix": "scsv", - "title": "Schema.org CSV", - "uri": "http://vocab.deri.ie/scsv" - }, - { - "namespace": "http://www.w3.org/ns/sparql-service-description#", - "prefix": "sd", - "title": "SPARQL 1.1 Service Description", - "uri": "http://www.w3.org/ns/sparql-service-description" - }, - { - "namespace": "https://w3id.org/vocab/sdm#", - "prefix": "sdm", - "title": "SPARQL endpoint metadata", - "uri": "https://w3id.org/vocab/sdm" - }, - { - "namespace": "http://purl.org/linked-data/sdmx#", - "prefix": "sdmx", - "title": "SDMX-RDF vocabulary", - "uri": "http://purl.org/linked-data/sdmx" - }, - { - "namespace": "http://purl.org/linked-data/sdmx/2009/code#", - "prefix": "sdmx-code", - "title": "SDMX Code", - "uri": "http://purl.org/linked-data/sdmx/2009/code" - }, - { - "namespace": "http://purl.org/linked-data/sdmx/2009/dimension#", - "prefix": "sdmx-dimension", - "title": "SDMX Dimension", - "uri": "http://purl.org/linked-data/sdmx/2009/dimension" - }, - { - "namespace": "http://sindice.com/vocab/search#", - "prefix": "search", - "title": "Sindice Search Vocabulary", - "uri": "http://vocab.deri.ie/search" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seas", - "title": "SEAS ontology", - "uri": "https://w3id.org/seas/" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seas-eval", - "title": "The SEAS Evaluation ontology", - "uri": "https://w3id.org/seas/EvaluationOntology" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seas-op", - "title": "The SEAS Failable System ontology", - "uri": "https://w3id.org/seas/OperatingOntology" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seas-qudt", - "title": "QUDT Alignment.", - "uri": "https://w3id.org/seas/QUDTAlignment" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seas-stats", - "title": "The SEAS Statistics ontology.", - "uri": "https://w3id.org/seas/StatisticsOntology" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seas-sys", - "title": "The SEAS System ontology", - "uri": "https://w3id.org/seas/SystemOntology" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seasb", - "title": "The SEAS Battery ontology.", - "uri": "https://w3id.org/seas/BatteryOntology" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seasbo", - "title": "The SEAS Building Ontology", - "uri": "https://w3id.org/seas/BuildingOntology" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seasd", - "title": "The SEAS Device ontology", - "uri": "https://w3id.org/seas/DeviceOntology" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seasfo", - "title": "The SEAS Forecasting ontology", - "uri": "https://w3id.org/seas/ForecastingOntology" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seast", - "title": "The SEAS Time Ontology.", - "uri": "https://w3id.org/seas/TimeOntology" - }, - { - "namespace": "https://w3id.org/seas/", - "prefix": "seasto", - "title": "The SEAS Trading ontology", - "uri": "https://w3id.org/seas/TradingOntology" - }, - { - "namespace": "http://securitytoolbox.appspot.com/securityMain#", - "prefix": "security", - "title": "Security Ontology", - "uri": "http://securitytoolbox.appspot.com/securityMain" - }, - { - "namespace": "http://semanticweb.cs.vu.nl/2009/11/sem/", - "prefix": "sem", - "title": "The SEM Ontology", - "uri": "http://semanticweb.cs.vu.nl/2009/11/sem/" - }, - { - "namespace": "http://purl.org/SemSur/", - "prefix": "semsur", - "title": "The Semantic Survey Ontology (semsur)", - "uri": "http://purl.org/SemSur/" - }, - { - "namespace": "http://purl.org/seo/", - "prefix": "seo", - "title": "The Scientific Events Ontology", - "uri": "http://purl.org/seo/" - }, - { - "namespace": "http://www.ontologydesignpatterns.org/cp/owl/sequence.owl#", - "prefix": "seq", - "title": "Sequence Pattern", - "uri": "http://www.ontologydesignpatterns.org/cp/owl/sequence.owl" - }, - { - "namespace": "http://purl.org/ontology/service#", - "prefix": "service", - "title": "The Service Ontology", - "uri": "http://purl.org/ontology/service" - }, - { - "namespace": "http://www.opengis.net/ont/sf#", - "prefix": "sf", - "title": "Simplified Features Geometry", - "uri": "http://www.opengis.net/ont/sf" - }, - { - "namespace": "http://www.w3.org/ns/shacl#", - "prefix": "sh", - "title": "W3C Shapes Constraint Language (SHACL) Vocabulary", - "uri": "http://www.w3.org/ns/shacl#" - }, - { - "namespace": "http://dati.cdec.it/lod/shoah/", - "prefix": "shoah", - "title": "Shoah Vocabulary Specification", - "uri": "http://dati.cdec.it/lod/shoah/" - }, - { - "namespace": "http://paul.staroch.name/thesis/SmartHomeWeather.owl#", - "prefix": "shw", - "title": "Smart Home Weather", - "uri": "http://paul.staroch.name/thesis/SmartHomeWeather.owl#" - }, - { - "namespace": "http://purl.org/ontology/similarity/", - "prefix": "sim", - "title": "The Similarity Ontology", - "uri": "http://purl.org/ontology/similarity/" - }, - { - "namespace": "http://semanticscience.org/resource/", - "prefix": "sio", - "title": "Semanticscience Integrated Ontology", - "uri": "http://semanticscience.org/ontology/sio.owl" - }, - { - "namespace": "http://rdfs.org/sioc/ns#", - "prefix": "sioc", - "title": "Semantically-Interlinked Online Communities", - "uri": "http://rdfs.org/sioc/ns#" - }, - { - "namespace": "http://www.ontologydesignpatterns.org/cp/owl/situation.owl#", - "prefix": "situ", - "title": "Situation Pattern", - "uri": "http://www.ontologydesignpatterns.org/cp/owl/situation.owl" - }, - { - "namespace": "http://www.w3.org/2004/02/skos/core#", - "prefix": "skos", - "title": "Simple Knowledge Organization System", - "uri": "http://www.w3.org/2004/02/skos/core" - }, - { - "namespace": "http://www.w3.org/2008/05/skos-xl#", - "prefix": "skosxl", - "title": "SKOS eXtension for Labels", - "uri": "http://www.w3.org/2008/05/skos-xl" - }, - { - "namespace": "http://www.w3.org/ns/solid/terms#", - "prefix": "solid", - "title": "Solid terms", - "uri": "http://www.w3.org/ns/solid/terms" - }, - { - "namespace": "http://purl.org/net/soron/", - "prefix": "sor", - "title": "SORON: Social Relationships ONtology", - "uri": "http://purl.org/net/soron" - }, - { - 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Deprivation Score 2010", - "uri": "http://opendatacommunities.org/datasets/imd-score-2010" - }, - { - "namespace": "http://linked.opendata.cz/resource/domain/cenia.cz/", - "prefix": "cz-cenia-pollution", - "title": "Integrated pollution registry", - "uri": "http://linked.opendata.cz/resource/dataset/cenia.cz/irz" - }, - { - "namespace": "http://iserve.kmi.open.ac.uk/iserve/", - "prefix": "iserve", - "title": "iServe: Linked Services Registry", - "uri": "http://iserve.kmi.open.ac.uk/" - }, - { - "namespace": "http://www4.wiwiss.fu-berlin.de/euraxess/resource/", - "prefix": "fu-berlin-euraxess", - "title": "EURAXESS - Researchers in Motion", - "uri": "http://www4.wiwiss.fu-berlin.de/euraxess/" - }, - { - "namespace": "http://tuskegee.eagle-i.net/i/", - "prefix": "eagle-i-tuskegee", - "title": "eagle-i @ Tuskegee University", - "uri": "http://tuskegee.eagle-i.net" - }, - { - "namespace": "http://eudbpedia.deusto.es/resource/", - "prefix": "dbpedia-eu", - "title": "DBpedia in Basque", - "uri": "http://eudbpedia.deusto.es" - }, - { - "namespace": "https://w3id.org/foodie/open/cz/pLPIS_180616_WGS/", - "prefix": "LPIS Czech Republic", - "title": "Land parcel dataset (LPIS) from Czech Republic", - "uri": "https://www.foodie-cloud.org/fct/" - } -] diff --git a/fuji_server/data/linked_vocab.yaml b/fuji_server/data/linked_vocab.yaml new file mode 100644 index 00000000..22702cb2 --- /dev/null +++ b/fuji_server/data/linked_vocab.yaml @@ -0,0 +1,4190 @@ +- namespace: http://www.irit.fr/recherches/MELODI/ontologies/SAN# + prefix: SAN + title: SAN (Semantic Actuator Network) + uri: http://www.irit.fr/recherches/MELODI/ontologies/SAN +- namespace: https://w3id.org/arco/ontology/location/ + prefix: a-loc + title: Location Ontology (ArCo network) + uri: https://w3id.org/arco/ontology/location +- namespace: http://purl.org/acco/ns# + prefix: acco + title: Accomodation Ontology + uri: http://purl.org/acco/ns +- namespace: http://www.w3.org/ns/auth/acl# + prefix: acl + title: Basic Access Control ontology + uri: http://www.w3.org/ns/auth/acl +- namespace: http://acm.rkbexplorer.com/ontologies/acm# + prefix: acm + title: ACM Classification Ontology + uri: http://www.rkbexplorer.com/ontologies/acm +- namespace: http://privatealpha.com/ontology/certification/1# + prefix: acrt + title: Agent Certification Ontology + uri: http://privatealpha.com/ontology/certification/1# +- namespace: http://www.w3.org/ns/adms# + prefix: adms + title: Asset Description Metadata Schema + uri: http://www.w3.org/ns/adms +- namespace: http://purl.org/ontology/af/ + prefix: af + title: Audio Features Ontology + uri: http://purl.org/ontology/af/ +- namespace: http://www.agls.gov.au/agls/terms/ + prefix: agls + title: AGLS Metadata Terms + uri: http://www.agls.gov.au/agls/terms +- namespace: http://promsns.org/def/agr# + prefix: agr + title: Agreements ontology + uri: http://promsns.org/def/agr +- namespace: http://d-nb.info/standards/elementset/agrelon# + prefix: agrelon + title: Agent Relationship Ontology + uri: http://d-nb.info/standards/elementset/agrelon +- namespace: http://purl.org/vocab/aiiso/schema# + prefix: aiiso + title: Academic Institution Internal Structure Ontology + uri: http://purl.org/vocab/aiiso/schema +- namespace: https://raw.githubusercontent.com/airs-linked-data/lov/latest/src/airs_vocabulary.ttl# + prefix: airs + title: Alliance of Information and Referral Services (AIRS) Vocabulary + uri: https://raw.githubusercontent.com/airs-linked-data/lov/latest/src/airs_vocabulary.ttl# +- namespace: http://securitytoolbox.appspot.com/securityAlgorithms# + prefix: algo + title: Algorithms Ontology + uri: http://securitytoolbox.appspot.com/securityAlgorithms# +- namespace: http://open-services.net/ns/asset# + prefix: am + title: OSLC Asset Management Vocabulary + uri: http://open-services.net/ns/asset# +- namespace: https://w3id.org/i40/aml# + prefix: aml + title: AutomationML Ontology + uri: https://w3id.org/i40/aml +- namespace: http://w3id.org/amlo/core# + prefix: amlo-core + title: AMLO-core vocabulary + uri: http://w3id.org/amlo/core +- namespace: http://purl.org/ontology/ao/core# + prefix: ao + title: Association Ontology + uri: http://purl.org/ontology/ao/core# +- namespace: http://purl.org/linked-data/api/vocab# + prefix: api + title: Linked Data API Vocabulary + uri: http://purl.org/linked-data/api/vocab# +- namespace: http://semweb.mmlab.be/ns/apps4X# + prefix: apps4X + title: The vocabulary for Co-creation Events based on Open Data + uri: http://semweb.mmlab.be/ns/apps4X +- namespace: http://purl.org/archival/vocab/arch# + prefix: arch + title: Archival collections ontology + uri: http://purl.org/archival/vocab/arch +- namespace: https://w3id.org/arco/ontology/core/ + prefix: arco + title: Core Ontology (ArCo network) + uri: https://w3id.org/arco/ontology/core +- namespace: http://www.arpenteur.org/ontology/Arpenteur.owl# + prefix: arp + title: Arpenteur Ontology + uri: http://www.arpenteur.org/ontology/Arpenteur.owl +- namespace: http://bblfish.net/work/atom-owl/2006-06-06/# + prefix: awol + title: Atom Syndication Ontology + uri: http://bblfish.net/work/atom-owl/2006-06-06/ +- namespace: http://purl.oclc.org/NET/ssnx/meteo/aws# + prefix: aws + title: Ontology for Meteorological sensors + uri: http://purl.oclc.org/NET/ssnx/meteo/aws +- namespace: http://bag.basisregistraties.overheid.nl/def/bag# + prefix: bag + title: Vocabulary for the Dutch base registration of buildings and addresses (BAG) + uri: http://bag.basisregistraties.overheid.nl/def/bag +- namespace: http://www.bbc.co.uk/ontologies/bbc/ + prefix: bbc + title: BBC Ontology + uri: http://www.bbc.co.uk/ontologies/bbc +- namespace: http://www.bbc.co.uk/ontologies/cms/ + prefix: bbccms + title: BBC CMS Ontology + uri: http://www.bbc.co.uk/ontologies/cms +- namespace: http://www.bbc.co.uk/ontologies/coreconcepts/ + prefix: bbccore + title: BBC Core Concepts + uri: http://www.bbc.co.uk/ontologies/coreconcepts +- namespace: http://www.bbc.co.uk/ontologies/provenance/ + prefix: bbcprov + title: BBC Provenance Ontology + uri: http://www.bbc.co.uk/ontologies/provenance +- namespace: https://w3id.org/BCI-ontology# + prefix: bci + title: Brain Computing Interface (BCI) Ontology + uri: https://w3id.org/BCI-ontology +- namespace: http://rdfs.co/bevon/ + prefix: bevon + title: 'BEVON: Beverage Ontology' + uri: http://rdfs.co/bevon/ +- namespace: http://id.loc.gov/ontologies/bibframe/ + prefix: bf + title: BIBFRAME Vocabulary + uri: http://id.loc.gov/ontologies/bibframe/ +- namespace: http://purl.org/ontology/bibo/ + prefix: bibo + title: The Bibliographic Ontology + uri: http://purl.org/ontology/bibo/ +- namespace: http://purl.org/net/nknouf/ns/bibtex# + prefix: bibtex + title: BibTeX ontology + uri: http://purl.org/net/nknouf/ns/bibtex +- namespace: http://bimerr.iot.linkeddata.es/def/occupancy-profile# + prefix: bimerr-op + title: Occupancy Profile ontology + uri: http://bimerr.iot.linkeddata.es/def/occupancy-profile# +- namespace: http://purl.org/vocab/bio/0.1/ + prefix: bio + title: 'BIO: A vocabulary for biographical information' + uri: http://purl.org/vocab/bio/0.1/ +- namespace: http://purl.org/NET/biol/ns# + prefix: biol + title: Biological Taxonomy Vocabulary 0.2 (Core) + uri: http://purl.org/NET/biol/ns# +- namespace: http://www.biopax.org/release/biopax-level3.owl# + prefix: biopax + title: BioPAX Level 3 ontology + uri: http://www.biopax.org/release/biopax-level3.owl +- namespace: http://purl.org/biotop/biotop.owl# + prefix: biotop + title: BioTop + uri: http://purl.org/biotop/biotop.owl +- namespace: http://purl.org/spar/biro/ + prefix: biro + title: The Bibliographic Reference Ontology + uri: http://purl.org/spar/biro +- namespace: http://www.bl.uk/schemas/bibliographic/blterms# + prefix: blt + title: British Library Terms RDF schema + uri: http://www.bl.uk/schemas/bibliographic/blterms +- namespace: http://swa.cefriel.it/ontologies/botdcat-ap# + prefix: bot + title: BotDCAT-AP - Data Catalogue vocabulary Application Profile for chatbots + uri: http://swa.cefriel.it/ontologies/botdcat-ap +- namespace: http://purl.org/NET/biol/botany# + prefix: botany + title: Biological Taxonomy Vocabulary 0.2 (Botany) + uri: http://purl.org/NET/biol/botany# +- namespace: http://data.vlaanderen.be/ns/persoon# + prefix: bperson + title: Person + uri: http://data.vlaanderen.be/ns/persoon +- namespace: http://vocab.deri.ie/br# + prefix: br + title: Brainstorm Ontology + uri: http://vocab.deri.ie/br +- namespace: http://brk.basisregistraties.overheid.nl/def/brk# + prefix: brk + title: Key Register Cadastre (BRK) vocabulary + uri: http://brk.basisregistraties.overheid.nl/def/brk +- namespace: http://brt.basisregistraties.overheid.nl/def/top10nl# + prefix: brt + title: Key Register Topography (BRT) vocabulary + uri: http://brt.basisregistraties.overheid.nl/def/top10nl +- namespace: https://w3id.org/bot# + prefix: bto + title: 'BOT: Building Topology Ontology' + uri: https://w3id.org/bot +- namespace: http://vocab.deri.ie/c4n# + prefix: c4n + title: Call for Anything vocabulary + uri: http://vocab.deri.ie/c4n +- namespace: http://purl.org/spar/c4o/ + prefix: c4o + title: C4O, the Citation Counting and Context Characterization Ontology + uri: http://purl.org/spar/c4o +- namespace: http://www.w3.org/2002/12/cal/ical# + prefix: cal + title: Internet Calendaring and Scheduling Core Object Specification + uri: http://www.w3.org/2002/12/cal/ical +- namespace: http://caressesrobot.org/ontology# + prefix: caresses + title: CARESSES Ontology + uri: http://caressesrobot.org/ontology +- namespace: http://purl.org/net/cartCoord# + prefix: cart + title: cartCoordOnt + uri: http://purl.org/net/cartCoord# +- namespace: http://comicmeta.org/cbo/ + prefix: cbo + title: Comic Book Ontology + uri: http://comicmeta.org/cbo/ +- namespace: http://creativecommons.org/ns# + prefix: cc + title: Creative Commons Rights Expression Language + uri: http://creativecommons.org/ns +- namespace: http://cookingbigdata.com/linkeddata/ccinstances# + prefix: cci + title: Ontology for Cloud Computing instances + uri: http://cookingbigdata.com/linkeddata/ccinstances +- namespace: http://purl.org/ontology/cco/core# + prefix: cco + title: Cognitive Characteristics Ontology + uri: http://purl.org/ontology/cco/core# +- namespace: http://cookingbigdata.com/linkeddata/ccpricing# + prefix: ccp + title: Vocabulary for prices options in Cloud Computing Services + uri: http://cookingbigdata.com/linkeddata/ccpricing +- namespace: http://cookingbigdata.com/linkeddata/ccregions# + prefix: ccr + title: Vocabulary for Regions and Zones on Cloud Computing + uri: http://cookingbigdata.com/linkeddata/ccregions +- namespace: http://cookingbigdata.com/linkeddata/ccsla# + prefix: ccsla + title: Service Level Agreement for Cloud Computing + uri: http://cookingbigdata.com/linkeddata/ccsla +- namespace: https://w3id.org/arco/ontology/context-description/ + prefix: cdesc + title: Context Description Ontology (ArCo network) + uri: https://w3id.org/arco/ontology/context-description +- namespace: http://purl.org/twc/ontology/cdm.owl# + prefix: cdm + title: Conceptual Depth and Momentum + uri: http://purl.org/twc/ontology/cdm.owl# +- namespace: http://purl.org/cld/cdtype/ + prefix: cdtype + title: The Collection Description Type Namespace + uri: http://purl.org/cld/cdtype/ +- namespace: http://www.ebusiness-unibw.org/ontologies/consumerelectronics/v1# + prefix: ceo + title: Consumer Electronics Ontology + uri: http://www.ebusiness-unibw.org/ontologies/consumerelectronics/v1 +- namespace: http://www.eurocris.org/ontologies/cerif/1.3# + prefix: cerif + title: CERIF Ontology 1.3 + uri: http://www.eurocris.org/ontologies/cerif/1.3 +- namespace: http://www.w3.org/ns/auth/cert# + prefix: cert + title: The Cert Ontology + uri: http://www.w3.org/ns/auth/cert# +- namespace: https://w3id.org/arco/ontology/cultural-event/ + prefix: cevent + title: Cultural Event Ontology (ArCo network) + uri: https://w3id.org/arco/ontology/cultural-event +- namespace: http://purl.oclc.org/NET/ssnx/cf/cf-feature# + prefix: cff + title: Climate and Forecast (CF) features + uri: http://purl.oclc.org/NET/ssnx/cf/cf-feature +- namespace: http://purl.oclc.org/NET/ssnx/cf/cf-property# + prefix: cfp + title: Climate and Forecast (CF) standard names parameter vocabulary + uri: http://purl.oclc.org/NET/ssnx/cf/cf-property +- namespace: http://linkeddata.finki.ukim.mk/lod/ontology/cfrl# + prefix: cfrl + title: Corporate Financial Reports and Loans Ontology + uri: http://linkeddata.finki.ukim.mk/lod/ontology/cfrl# +- namespace: http://reference.data.gov.uk/def/central-government/ + prefix: cgov + title: Central Government Ontology + uri: http://reference.data.gov.uk/def/central-government +- namespace: http://purl.org/ontology/chord/ + prefix: chord + title: The OMRAS2 Chord Ontology + uri: http://purl.org/ontology/chord/ +- namespace: https://privatealpha.com/ontology/content-inventory/1# + prefix: ci + title: A Content Inventory Vocabulary + uri: https://privatealpha.com/ontology/content-inventory/1# +- namespace: http://dati.beniculturali.it/cis/ + prefix: cis + title: 'Cultural-ON (Cultural ONtology): Cultural Institute/Site and Cultural Event Ontology' + uri: http://dati.beniculturali.it/cultural-ON/cultural-ON.owl +- namespace: http://purl.org/spar/cito/ + prefix: cito + title: CiTO, the Citation Typing Ontology + uri: http://purl.org/spar/cito +- namespace: http://www.essepuntato.it/2013/03/cito-functions/ + prefix: citof + title: Functions of Citations + uri: http://www.essepuntato.it/2013/03/cito-functions +- namespace: http://advene.org/ns/cinelab/ld# + prefix: cl + title: Cinelab ontology + uri: http://advene.org/ns/cinelab/ld +- namespace: http://purl.org/cld/terms/ + prefix: cld + title: The Collection Description Terms + uri: http://purl.org/cld/terms/ +- namespace: http://purl.org/twc/ontologies/cmo.owl# + prefix: cmo + title: Conceptual Model Ontology + uri: http://purl.org/twc/ontologies/cmo.owl +- namespace: http://www.w3.org/2011/content# + prefix: cnt + title: Representing Content in RDF + uri: http://www.w3.org/2011/content +- namespace: http://purl.org/ontology/co/core# + prefix: co + title: Counter Ontology + uri: http://purl.org/ontology/co/core# +- namespace: http://data.cochrane.org/ontologies/core/ + prefix: cochrane + title: Cochrane Core Vocabulary Ontology + uri: http://data.cochrane.org/ontologies/core/ +- namespace: https://w3id.org/cocoon/v1.0# + prefix: cocoon + title: Cloud Computing Services Ontology + uri: https://w3id.org/cocoon/v1.0 +- namespace: http://vocab.deri.ie/cogs# + prefix: cogs + title: COGS Vocabulary + uri: http://vocab.deri.ie/cogs +- namespace: http://purl.org/configurationontology# + prefix: cold + title: "'Configuration as Linked Data' ontology" + uri: http://purl.org/configurationontology +- namespace: http://purl.org/co/ + prefix: coll + title: Collections Ontology + uri: http://purl.org/co +- namespace: http://vocab.resc.info/communication# + prefix: comm + title: Vocabulary related to incident communication + uri: http://vocab.resc.info/communication +- namespace: http://www.w3.org/2007/uwa/context/common.owl# + prefix: common + title: The Delivery Context Ontology + uri: http://www.w3.org/2007/uwa/context/deliverycontext.owl +- namespace: http://www.w3.org/2000/10/swap/pim/contact# + prefix: con + title: Contact + uri: http://www.w3.org/2000/10/swap/pim/contact +- namespace: http://purl.org/twc/vocab/conversion/ + prefix: conversion + title: Conversion Ontology + uri: http://purl.org/twc/vocab/conversion/ +- namespace: http://purl.org/coo/ns# + prefix: coo + title: Car Options Ontology + uri: http://purl.org/coo/ns# +- namespace: http://www.ontologydesignpatterns.org/schemas/cpannotationschema.owl# + prefix: cpa + title: Content Pattern Annotations + uri: http://www.ontologydesignpatterns.org/schemas/cpannotationschema.owl +- namespace: http://www.cidoc-crm.org/cidoc-crm/ + prefix: crm + title: CIDOC Conceptual Reference Model + uri: http://www.cidoc-crm.org/cidoc-crm/ +- namespace: http://rhizomik.net/ontologies/copyrightonto.owl# + prefix: cro + title: Copyright Ontology + uri: http://rhizomik.net/ontologies/copyrightonto.owl +- namespace: http://purl.org/vocab/changeset/schema# + prefix: cs + title: Changeset + uri: http://purl.org/vocab/changeset/schema +- namespace: http://vocab.deri.ie/csp# + prefix: csp + title: Constraint Satisfaction Problems Vocabulary + uri: http://vocab.deri.ie/csp +- namespace: http://www.w3.org/ns/csvw# + prefix: csvw + title: CSV on the Web Vocabulary + uri: http://www.w3.org/ns/csvw# +- namespace: http://www.tele.pw.edu.pl/~sims-onto/ConnectivityType.owl# + prefix: ct + title: Connectivity types + uri: http://www.tele.pw.edu.pl/~sims-onto/ConnectivityType.owl +- namespace: https://w3id.org/arco/ontology/catalogue/ + prefix: ctlog + title: Catalogue Ontology (ArCo network) + uri: https://w3id.org/arco/ontology/catalogue +- namespace: http://purl.org/ctic/infraestructuras/organizacion# + prefix: ctorg + title: Vocabulary for the structure of the public organizations + uri: http://purl.org/ctic/infraestructuras/organizacion +- namespace: https://w3id.org/ibp/CTRLont# + prefix: ctrl + title: CTRLont - An ontology to formally specify the control domain + uri: https://w3id.org/ibp/CTRLont +- namespace: http://www.demcare.eu/ontologies/contextdescriptor.owl# + prefix: ctxdesc + title: Context Descriptor Pattern + uri: http://www.demcare.eu/ontologies/contextdescriptor.owl +- namespace: http://purl.org/cwmo/# + prefix: cwmo + title: Creative Workshop Management Ontology (CWMO) + uri: http://purl.org/cwmo/# +- namespace: http://www.bbc.co.uk/ontologies/creativework/ + prefix: cwork + title: Creative Work Ontology + uri: http://www.bbc.co.uk/ontologies/creativework +- namespace: http://sparql.cwrc.ca/ontologies/cwrc# + prefix: cwrc + title: The CWRC Ontology + uri: http://sparql.cwrc.ca/ontologies/cwrc +- namespace: http://www.wiwiss.fu-berlin.de/suhl/bizer/D2RQ/0.1# + prefix: d2rq + title: D2RQ - Language Specification + uri: http://www.wiwiss.fu-berlin.de/suhl/bizer/D2RQ/0.1 +- namespace: http://purl.org/NET/dady# + prefix: dady + title: Dataset Dynamics (dady) vocabulary + uri: http://vocab.deri.ie/dady +- namespace: http://purl.org/eis/vocab/daq# + prefix: daq + title: Dataset Quality Vocabulary + uri: http://purl.org/eis/vocab/daq# +- namespace: http://dataid.dbpedia.org/ns/core# + prefix: dataid + title: DataID + uri: http://dataid.dbpedia.org/ns/core# +- namespace: http://vocab.datex.org/terms# + prefix: datex + title: Linked Datex II + uri: http://vocab.datex.org/terms# +- namespace: http://theme-e.adaptcentre.ie/dave# + prefix: dave + title: Data Value Vocabulary (DaVe) + uri: http://theme-e.adaptcentre.ie/dave/dave.ttl +- namespace: http://purl.org/net/dbm/ontology# + prefix: dbm + title: DBM Ontology + uri: http://purl.org/net/dbm/ontology# +- namespace: http://ontology.cybershare.utep.edu/dbowl/relational-to-ontology-mapping-primitive.owl# + prefix: dbowl + title: Relational to Ontology Mapping Primitive + uri: http://ontology.cybershare.utep.edu/dbowl +- namespace: http://dbpedia.org/ontology/ + prefix: dbpedia-owl + title: The DBpedia Ontology + uri: http://dbpedia.org/ontology/ +- namespace: http://ontologi.es/doap-bugs# + prefix: dbug + title: DOAP Bugs + uri: http://ontologi.es/doap-bugs# +- namespace: http://purl.org/dc/dcam/ + prefix: dcam + title: DCMI Abstract Model + uri: http://purl.org/dc/dcam/ +- namespace: http://www.w3.org/ns/dcat# + prefix: dcat + title: Data Catalog Vocabulary + uri: http://www.w3.org/ns/dcat +- namespace: http://purl.org/dc/elements/1.1/ + prefix: dce + title: Dublin Core Metadata Element Set + uri: http://purl.org/dc/elements/1.1/ +- namespace: http://purl.org/spar/datacite/ + prefix: dcite + title: The DataCite Ontology + uri: http://purl.org/spar/datacite +- namespace: http://ndl.go.jp/dcndl/terms/ + prefix: dcndl + title: NDL Metadata Terms + uri: http://ndl.go.jp/dcndl/terms/ +- namespace: http://purl.org/dc/terms/ + prefix: dcterms + title: DCMI Metadata Terms + uri: http://purl.org/dc/terms/ +- namespace: http://purl.org/dc/dcmitype/ + prefix: dctype + title: DCMI Type Vocabulary + uri: http://purl.org/dc/dcmitype/ +- namespace: https://w3id.org/arco/ontology/denotative-description/ + prefix: ddesc + title: Denotative Description Ontology (ArCo network) + uri: https://w3id.org/arco/ontology/denotative-description +- namespace: http://www.demcare.eu/ontologies/demlab.owl# + prefix: demlab + title: Dem@Care Lab Ontology for Dementia Assessment + uri: http://www.demcare.eu/ontologies/demlab.owl +- namespace: http://purl.org/spar/deo/ + prefix: deo + title: The Discourse Elements Ontology + uri: http://purl.org/spar/deo +- namespace: http://ontologi.es/doap-deps# + prefix: deps + title: DOAP Dependencies + uri: http://ontologi.es/doap-deps# +- namespace: http://datafoodconsortium.org/ontologies/DFC_FullModel.owl# + prefix: dfc + title: Data Food Consortium Ontology + uri: http://datafoodconsortium.org/ontologies/DFC_FullModel.owl +- namespace: http://datafoodconsortium.org/ontologies/DFC_BusinessOntology.owl# + prefix: dfcb + title: DFC Business Ontology + uri: http://datafoodconsortium.org/ontologies/DFC_BusinessOntology.owl +- namespace: https://w3id.org/dingo# + prefix: dg + title: DINGO Ontology + uri: https://w3id.org/dingo/ +- namespace: http://purl.org/healthcarevocab/v1# + prefix: dicom + title: Healthcare metadata - DICOM ontology + uri: http://purl.org/healthcarevocab/v1 +- namespace: https://w3id.org/dio# + prefix: dio + title: The Design Intent Ontology + uri: https://w3id.org/dio +- namespace: http://purl.org/dita/ns# + prefix: dita + title: DITA RDF ontology + uri: http://purl.org/dita/ns# +- namespace: http://www.data-knowledge.org/dk/ + prefix: dk + title: The Data Knowledge Vocabulary + uri: http://www.data-knowledge.org/dk/ +- namespace: http://d-nb.info/standards/elementset/dnb# + prefix: dnbt + title: DNB Metadata Terms + uri: http://d-nb.info/standards/elementset/dnb +- namespace: http://usefulinc.com/ns/doap# + prefix: doap + title: Description of a Project vocabulary + uri: http://usefulinc.com/ns/doap# +- namespace: http://www.w3.org/2000/10/swap/pim/doc# + prefix: doc + title: Works, licences, derivatives and dependencies + uri: http://www.w3.org/2000/10/swap/pim/doc +- namespace: http://purl.org/spar/doco/ + prefix: doco + title: DoCO, the Document Components Ontology + uri: http://purl.org/spar/doco +- namespace: http://purl.org/ontology/dso# + prefix: docso + title: Document Service Ontology + uri: http://purl.org/ontology/dso +- namespace: http://elite.polito.it/ontologies/dogont + prefix: dogont + title: Ontology Modeling for Intelligent Domotic Environments + uri: http://elite.polito.it/ontologies/dogont.owl +- namespace: http://reference.data.gov.au/def/ont/dataset# + prefix: donto + title: Dataset Ontology + uri: http://reference.data.gov.au/def/ont/dataset +- namespace: http://purl.org/dpn# + prefix: dpn + title: Data Provider Node ontology + uri: http://purl.org/dpn +- namespace: http://promsns.org/def/do# + prefix: dprov + title: Decision Provenance ontology (DecPROV) + uri: http://promsns.org/def/decprov +- namespace: http://semwebquality.org/ontologies/dq-constraints# + prefix: dqc + title: The Data Quality Constraints Library + uri: http://semwebquality.org/ontologies/dq-constraints +- namespace: http://purl.org/dqm-vocabulary/v1/dqm# + prefix: dqm + title: The Data Quality Management Vocabulary + uri: http://purl.org/dqm-vocabulary/v1/dqm +- namespace: http://www.w3.org/ns/dqv# + prefix: dqv + title: Data Quality Vocabulary + uri: http://www.w3.org/ns/dqv +- namespace: http://purl.org/swan/2.0/discourse-relationships/ + prefix: dr + title: Discourse relationships vocabulary + uri: http://purl.org/swan/2.0/discourse-relationships/ +- namespace: http://www.purl.org/drammar# + prefix: drama + title: 'Drammar: a comprehensive ontology of drama' + uri: http://www.purl.org/drammar +- namespace: http://vocab.data.gov/def/drm# + prefix: drm + title: Data Reference Model + uri: http://vocab.data.gov/def/drm +- namespace: http://purl.org/ctic/dcat# + prefix: ds + title: Dataset Catalog Vocabulary + uri: http://purl.org/ctic/dcat# +- namespace: http://purl.org/dsnotify/vocab/eventset/ + prefix: dsn + title: 'DSNotify Eventsets: A vocabulary for change events in linked data sources' + uri: http://purl.org/dsnotify/vocab/eventset/ +- namespace: http://www.linkedmodel.org/schema/dtype# + prefix: dtype + title: Datatype Ontology + uri: http://www.linkedmodel.org/schema/dtype +- namespace: http://www.ontologydesignpatterns.org/ont/dul/DUL.owl# + prefix: dul + title: DOLCE+DnS Ultralite + uri: http://www.ontologydesignpatterns.org/ont/dul/DUL.owl +- namespace: http://www.w3.org/ns/duv# + prefix: duv + title: Dataset Usage Vocabulary + uri: http://www.w3.org/ns/duv +- namespace: http://purl.org/ontology/dvia# + prefix: dvia + title: The visualization vocabulary for LOD applications + uri: http://purl.org/ontology/dvia +- namespace: http://archivi.ibc.regione.emilia-romagna.it/ontology/eac-cpf/ + prefix: eac-cpf + title: 'EAC-CPF Descriptions Ontology for Linked Archival Data:' + uri: http://archivi.ibc.regione.emilia-romagna.it/ontology/eac-cpf/ +- namespace: http://www.w3.org/ns/earl# + prefix: earl + title: Evaluation and Report Language + uri: http://www.w3.org/ns/earl +- namespace: http://linked.earth/ontology# + prefix: earth + title: The Linked Earth Ontology + uri: http://linked.earth/ontology# +- namespace: http://www.ebu.ch/metadata/ontologies/ebucore/ebucore# + prefix: ebucore + title: EBU Ontology + uri: http://www.ebu.ch/metadata/ontologies/ebucore/ebucore +- namespace: https://vocab.eccenca.com/revision/ + prefix: eccrev + title: RDF changes and revisions vocabulary + uri: https://vocab.eccenca.com/revision/ +- namespace: http://purl.org/ontology/ecpo# + prefix: ecpo + title: Enumeration and Chronology of Periodicals Ontology + uri: http://purl.org/ontology/ecpo +- namespace: http://erlangen-crm.org/current/ + prefix: ecrm + title: Erlangen CRM / OWL + uri: http://erlangen-crm.org/current/ +- namespace: http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-edac.owl# + prefix: edac + title: ELSEWeb EDAC Ontology + uri: http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-edac.owl +- namespace: http://www.europeana.eu/schemas/edm/ + prefix: edm + title: Europeana Data Model vocabulary + uri: http://www.europeana.eu/schemas/edm/ +- namespace: https://schema.edu.ee/ + prefix: edu + title: Education Ontology + uri: https://schema.edu.ee/ +- namespace: http://ns.inria.fr/semed/eduprogression# + prefix: edupro + title: EduProgression Ontology + uri: http://ns.inria.fr/semed/eduprogression/ +- namespace: http://purl.org/eem# + prefix: eem + title: The EPCIS Event Model + uri: http://purl.org/eem +- namespace: https://w3id.org/eepsa# + prefix: eepsa + title: EEPSA (Energy Efficiency Prediction Semantic Assistant) Ontology + uri: https://w3id.org/eepsa +- namespace: http://opendata.aragon.es/def/ei2a# + prefix: ei2a + title: |- + Aragon Interoperable Information Structure Ontology + EI2A + uri: https://opendata.aragon.es/def/ei2a/ei2a.owl +- namespace: http://purl.org/ctic/sector-publico/elecciones# + prefix: elec + title: Vocabulary for Vote Results + uri: http://purl.org/ctic/sector-publico/elecciones +- namespace: http://data.europa.eu/eli/ontology# + prefix: eli + title: The European Legislation Identifier + uri: http://data.europa.eu/eli/ontology +- namespace: http://ns.inria.fr/emoca# + prefix: emotion + title: Emotion Ontology for Context Awareness + uri: http://ns.inria.fr/emoca +- namespace: http://purl.org/ctic/empleo/oferta# + prefix: emp + title: A vocabulary for jobs + uri: http://purl.org/ctic/empleo/oferta +- namespace: http://labs.mondeca.com/vocab/endpointStatus# + prefix: ends + title: Vocabulary of endpoint status (availability, responseTime) + uri: http://labs.mondeca.com/vocab/endpointStatus +- namespace: http://eprints.org/ontology/ + prefix: ep + title: EPrints Ontology + uri: http://eprints.org/ontology/ +- namespace: https://w3id.org/ep-plan# + prefix: eppl + title: The EP-Plan ontology + uri: https://w3id.org/ep-plan +- namespace: http://data.europa.eu/esco/model# + prefix: esco + title: The ESCO ontology + uri: http://data.europa.eu/esco/model +- namespace: http://purl.org/essglobal/vocab/ + prefix: essglobal + title: ESSGlobal Vocabulary + uri: http://purl.org/essglobal/vocab/ +- namespace: http://elite.polito.it/ontologies/eupont.owl# + prefix: eupont + title: 'EUPont: an ontology for End User Programming of the IoT' + uri: http://elite.polito.it/ontologies/eupont.owl +- namespace: http://purl.org/NET/c4dm/event.owl# + prefix: event + title: The Event Ontology + uri: http://purl.org/NET/c4dm/event.owl +- namespace: http://purl.org/net/ns/ex# + prefix: ex + title: Example vocabulary + uri: http://purl.org/net/ns/ex +- namespace: http://www.w3.org/2003/12/exif/ns# + prefix: exif + title: Exif data description vocabulary + uri: http://www.w3.org/2003/12/exif/ns +- namespace: http://purl.org/spar/fabio/ + prefix: fabio + title: FRBR-aligned Bibliographic Ontology + uri: http://purl.org/spar/fabio +- namespace: http://biohackathon.org/resource/faldo# + prefix: faldo + title: Feature Annotation Location Description Ontology + uri: http://biohackathon.org/resource/faldo +- namespace: http://vocab.data.gov/def/fea# + prefix: fea + title: Federal Enterprise Architecture Vocabulary + uri: http://vocab.data.gov/def/fea +- namespace: http://w3id.org/vcb/fel# + prefix: fel + title: A Fine-grained Entity Linking vocabulary + uri: http://w3id.org/vcb/fel# +- namespace: http://purl.org/iot/ontology/fiesta-iot# + prefix: fiesta-iot + title: FIESTA-IoT Ontology + uri: http://purl.org/iot/ontology/fiesta-iot +- namespace: http://purl.org/iot/ontology/fiesta-iot# + prefix: fiesta-priv + title: FIESTA-Priv Ontology + uri: http://purl.org/iot/ontology/fiesta-priv# +- namespace: http://xmlns.com/foaf/0.1/ + prefix: foaf + title: Friend of a Friend vocabulary + uri: http://xmlns.com/foaf/0.1/ +- namespace: https://w3id.org/fog# + prefix: fog + title: 'FOG: File Ontology for Geometry formats' + uri: https://w3id.org/fog +- namespace: https://w3id.org/seas/FeatureOfInterestOntology/ + prefix: foio + title: The SEAS Feature of Interest ontology. + uri: https://w3id.org/seas/FeatureOfInterestOntology +- namespace: http://www.w3.org/TR/2003/PR-owl-guide-20031209/food# + prefix: fowl + title: Food Ontology in OWL + uri: http://www.w3.org/TR/2003/PR-owl-guide-20031215/food +- namespace: http://purl.org/cerif/frapo/ + prefix: frapo + title: Funding, Research Administration and Projects Ontology + uri: http://purl.org/cerif/frapo/ +- namespace: http://streamreasoning.org/ontologies/frappe# + prefix: frappe + title: 'FraPPE: Frame, Pixel, Place, Event vocabulary' + uri: http://streamreasoning.org/ontologies/frappe# +- namespace: http://purl.org/vocab/frbr/core# + prefix: frbr + title: Expression of Core FRBR Concepts in RDF + uri: http://purl.org/vocab/frbr/core +- namespace: http://purl.org/vocab/frbr/extended# + prefix: frbre + title: Extended FRBR + uri: http://purl.org/vocab/frbr/extended +- namespace: http://www.w3.org/2004/09/fresnel# + prefix: fresnel + title: Fresnel Lens and Format Core Vocabulary + uri: http://www.w3.org/2004/09/fresnel +- namespace: http://data.ordnancesurvey.co.uk/ontology/50kGazetteer/ + prefix: g50k + title: 50K Gazetteer Vocabulary + uri: http://data.ordnancesurvey.co.uk/ontology/50kGazetteer/ +- namespace: http://data.totl.net/game/ + prefix: game + title: TotL Game Ontology + uri: http://data.totl.net/game/ +- namespace: http://www.oegov.org/core/owl/gc# + prefix: gc + title: oeGOV Government Core Ontology + uri: http://www.oegov.org/core/owl/gc +- namespace: http://ontology.eil.utoronto.ca/GCI/Foundation/GCI-Foundation.owl# + prefix: gci + title: Global City Indicator Foundation Ontology + uri: http://ontology.eil.utoronto.ca/GCI/Foundation/GCI-Foundation.owl +- namespace: https://w3id.org/GConsent# + prefix: gcon + title: GConsent - a consent ontology based on the GDPR + uri: https://w3id.org/GConsent +- namespace: http://reference.data.gov/def/govdata/ + prefix: gd + title: Government Data Vocabulary + uri: http://vocab.data.gov/gd +- namespace: https://w3id.org/GDPRov# + prefix: gdprov + title: The GDPR Provenance ontology + uri: https://w3id.org/GDPRov +- namespace: https://w3id.org/GDPRtEXT# + prefix: gdprt + title: GDPR text EXTensions + uri: https://w3id.org/GDPRtEXT +- namespace: http://purl.org/gen/0.1# + prefix: gen + title: Vocabulary for Linked Genealogical Data + uri: http://purl.org/gen/0.1# +- namespace: http://www.w3.org/2003/01/geo/wgs84_pos# + prefix: geo + title: WGS84 Geo Positioning + uri: http://www.w3.org/2003/01/geo/wgs84_pos +- namespace: http://vocab.lenka.no/geo-deling# + prefix: geod + title: Administrative vocabulary for Norway + uri: http://vocab.lenka.no/geo-deling +- namespace: http://data.ign.fr/def/geofla# + prefix: geofla + title: Ontology of administrative units at IGN-France + uri: http://data.ign.fr/def/geofla +- namespace: http://data.ign.fr/def/geometrie# + prefix: geom + title: Ontology for geometry + uri: http://data.ign.fr/def/geometrie +- namespace: https://www.gleif.org/ontology/L1/ + prefix: gleif-L1 + title: Global Legal Entity Identifier Foundation Level 1 Ontology - Who Is Who + uri: https://www.gleif.org/ontology/L1/ +- namespace: https://www.gleif.org/ontology/L2/ + prefix: gleif-L2 + title: Global Legal Entity Identifier Foundation Level 2 Ontology - Who Owns Whom + uri: https://www.gleif.org/ontology/L2/ +- namespace: https://www.gleif.org/ontology/Base/ + prefix: gleif-base + title: Global Legal Entity Identifier Foundation Base Ontology + uri: https://www.gleif.org/ontology/Base/ +- namespace: https://www.gleif.org/ontology/EntityLegalForm/ + prefix: gleif-elf + title: Entity Legal Form Ontology + uri: https://www.gleif.org/ontology/EntityLegalForm/ +- namespace: https://www.gleif.org/ontology/Geocoding/ + prefix: gleif-geo + title: Global Legal Entity Identifier Foundation Geocoding Ontology + uri: https://www.gleif.org/ontology/Geocoding/ +- namespace: https://www.gleif.org/ontology/RegistrationAuthority/ + prefix: gleif-ra + title: Global Legal Entity Identifier Foundation Registration Authority Ontology + uri: https://www.gleif.org/ontology/RegistrationAuthority/ +- namespace: https://www.gleif.org/ontology/ReportingException/ + prefix: gleif-repex + title: Global Legal Entity Identifier Foundation Reporting Exception Ontology + uri: https://www.gleif.org/ontology/ReportingException/ +- namespace: http://www.opengis.net/ont/gml# + prefix: gml + title: OGC Geometry + uri: http://www.opengis.net/ont/gml +- namespace: http://www.geonames.org/ontology# + prefix: gn + title: The Geonames ontology + uri: http://www.geonames.org/ontology +- namespace: http://d-nb.info/standards/elementset/gnd# + prefix: gndo + title: GND Ontology + uri: http://d-nb.info/standards/elementset/gnd# +- namespace: http://purl.org/linguistics/gold/ + prefix: gold + title: General Ontology for Linguistic Description + uri: http://purl.org/linguistics/gold +- namespace: https://w3id.org/gom# + prefix: gom + title: 'GOM: Geometry Metadata Ontology' + uri: https://w3id.org/gom +- namespace: http://gov.genealogy.net/ontology.owl# + prefix: gov + title: Ontology for modelling historic administrative information. + uri: http://gov.genealogy.net/ontology.owl +- namespace: http://purl.org/goodrelations/v1# + prefix: gr + title: The GoodRelations Ontology for Semantic Web-based E-Commerce + uri: http://purl.org/goodrelations/v1 +- namespace: http://www.w3.org/2003/g/data-view# + prefix: grddl + title: Gleaning Resource Descriptions from Dialects of Languages Vocabulary + uri: http://www.w3.org/2003/g/data-view +- namespace: http://www.w3.org/2006/gen/ont# + prefix: gso + title: Generic Specific Ontology + uri: http://www.w3.org/2006/gen/ont +- namespace: http://www.opengis.net/ont/geosparql# + prefix: gsp + title: OGC GeoSPARQL + uri: http://www.opengis.net/ont/geosparql +- namespace: http://vocab.gtfs.org/terms# + prefix: gtfs + title: General Transit Feed Specification + uri: http://vocab.gtfs.org/terms# +- namespace: http://resource.geosciml.org/ontology/timescale/gts# + prefix: gts + title: Geologic Timescale model + uri: http://resource.geosciml.org/ontology/timescale/gts +- namespace: http://vocab.getty.edu/ontology# + prefix: gvp + title: Getty Vocabulary Program ontology + uri: http://vocab.getty.edu/ontology +- namespace: http://sensormeasurement.appspot.com/ont/home/homeActivity# + prefix: ha + title: Home Activity + uri: http://sensormeasurement.appspot.com/ont/home/homeActivity# +- namespace: https://www.w3.org/2019/wot/hypermedia# + prefix: hctl + title: Hypermedia Controls Ontology + uri: https://www.w3.org/2019/wot/hypermedia# +- namespace: http://purl.org/net/hifm/ontology# + prefix: hifm + title: HIFM Ontology + uri: http://purl.org/net/hifm/ontology# +- namespace: http://purl.org/ontology/holding# + prefix: holding + title: Holding Ontology + uri: http://purl.org/ontology/holding +- namespace: http://health.data.gov/def/hospital/ + prefix: hosp + title: Hospital Vocabulary + uri: http://vocab.data.gov/hosp +- namespace: http://vcharpenay.github.io/hto/hto.xml# + prefix: hto + title: Haystack Tagging Ontology + uri: http://vcharpenay.github.io/hto/hto.xml +- namespace: http://www.w3.org/2011/http# + prefix: http + title: HTTP in RDF + uri: http://www.w3.org/2011/http +- namespace: https://privatealpha.com/ontology/ibis/1# + prefix: ibis + title: IBIS Vocabulary + uri: https://privatealpha.com/ontology/ibis/1# +- namespace: http://ontology.eil.utoronto.ca/icontact.owl# + prefix: ic + title: 'International Contact Ontology: Addresses, phone numbers and emails.' + uri: http://ontology.eil.utoronto.ca/icontact.owl +- namespace: http://rdf.insee.fr/def/demo# + prefix: idemo + title: Demographic ontology from the French Statistics Institute + uri: http://rdf.insee.fr/def/demo +- namespace: http://www.identity.org/ontologies/identity.owl# + prefix: identity + title: Ontology of digital identity. + uri: http://www.identity.org/ontologies/identity.owl +- namespace: https://w3id.org/ifc/IFC4_ADD1# + prefix: ifc + title: IFC4_ADD1 + uri: https://w3id.org/ifc/IFC4_ADD1 +- namespace: http://rdf.insee.fr/def/geo# + prefix: igeo + title: French Statistical ontology for geolocation + uri: http://rdf.insee.fr/def/geo +- namespace: http://data.ign.fr/def/ignf# + prefix: ignf + title: Ontology of coordinates reference systems + uri: http://data.ign.fr/def/ignf +- namespace: http://imgpedia.dcc.uchile.cl/ontology# + prefix: imo + title: The IMGpedia Ontology + uri: http://imgpedia.dcc.uchile.cl/ontology +- namespace: http://vocab.resc.info/incident# + prefix: incident + title: Vocabulary to describe incident response by emergency services + uri: http://vocab.resc.info/incident +- namespace: http://www.ontologydesignpatterns.org/cp/owl/informationrealization.owl# + prefix: infor + title: Information Realization + uri: http://www.ontologydesignpatterns.org/cp/owl/informationrealization.owl +- namespace: http://purl.org/innovation/ns# + prefix: inno + title: Ontology for Innovation + uri: http://purl.org/innovation/ns +- namespace: http://reference.data.gov.uk/def/intervals/ + prefix: interval + title: Intervals Ontology + uri: http://reference.data.gov.uk/def/intervals +- namespace: http://www.ontologydesignpatterns.org/ont/dul/IOLite.owl# + prefix: iol + title: Information Objects ontology + uri: http://www.ontologydesignpatterns.org/ont/dul/IOLite.owl +- namespace: http://purl.oclc.org/NET/UNIS/fiware/iot-lite# + prefix: iot-lite + title: Iot-lite ontology + uri: http://purl.oclc.org/NET/UNIS/fiware/iot-lite# +- namespace: http://www.irit.fr/recherches/MELODI/ontologies/IoT-O# + prefix: ioto + title: IoT-O + uri: http://www.irit.fr/recherches/MELODI/ontologies/IoT-O +- namespace: http://purl.org/iot/vocab/iot-taxonomy-lite# + prefix: iottaxolite + title: The IoTTaxonomy-lite Taxonomy + uri: http://purl.org/iot/vocab/iot-taxonomy-lite# +- namespace: http://purl.org/ipo/core# + prefix: ipo + title: IPO - Issue Procedure Ontology + uri: http://purl.org/ipo/core +- namespace: http://www.ontologydesignpatterns.org/ont/web/irw.owl# + prefix: irw + title: The Identity of Resources on the Web ontology + uri: http://www.ontologydesignpatterns.org/ont/web/irw.owl +- namespace: http://purl.org/ontology/is/core# + prefix: is + title: Info Service Ontology + uri: http://purl.org/ontology/is/core# +- namespace: http://purl.org/iso25964/skos-thes# + prefix: iso-thes + title: ISO 25964 SKOS extension + uri: http://purl.org/iso25964/skos-thes +- namespace: http://ontology.eil.utoronto.ca/ISO37120.owl# + prefix: iso37120 + title: ISO 37120 indicator URIs + uri: http://ontology.eil.utoronto.ca/ISO37120.owl +- namespace: http://reference.data.gov.au/def/ont/iso19160-1-address# + prefix: isoadr + title: ISO19160-1:2015 Address ontology + uri: http://reference.data.gov.au/def/ont/iso19160-1-address +- namespace: http://dati.isprambiente.it/ontology/core# + prefix: ispra + title: Ispra Ontology + uri: http://dati.isprambiente.it/ontology/core# +- namespace: https://data.istex.fr/ontology/istex# + prefix: istex + title: Istex ontology for scholarly documents and extracted entities + uri: https://data.istex.fr/ontology/istex# +- namespace: http://ontology.it/itsmo/v1# + prefix: itsmo + title: IT Service Management Ontology + uri: http://ontology.it/itsmo/v1 +- namespace: https://www.w3.org/2019/wot/json-schema# + prefix: jsonsc + title: JSON Schema in RDF + uri: https://www.w3.org/2019/wot/json-schema# +- namespace: http://w3id.org/charta77/jup/ + prefix: jup + title: Ontology of Building Accessibility + uri: http://w3id.org/charta77/jup +- namespace: http://rdfs.co/juso/ + prefix: juso + title: Juso Ontology + uri: http://rdfs.co/juso/ +- namespace: http://rdfs.co/juso/kr/ + prefix: juso.kr + title: South Korea Extension to Juso Ontology + uri: http://rdfs.co/juso/kr/ +- namespace: http://linkeddata.center/kees/v1# + prefix: kees + title: KEES Ontology + uri: http://linkeddata.center/kees/v1 +- namespace: http://purl.org/NET/c4dm/keys.owl# + prefix: keys + title: Keys Ontology + uri: http://purl.org/NET/c4dm/keys.owl +- namespace: http://www.disit.org/km4city/schema# + prefix: km4c + title: km4city, the DISIT Knowledge Model for City and Mobility + uri: http://www.disit.org/km4city/schema +- namespace: http://purl.org/net/vocab/2004/03/label# + prefix: label + title: label + uri: http://purl.org/net/vocab/2004/03/label +- namespace: http://lawd.info/ontology/ + prefix: lawd + title: Linking Ancient World Data Ontology + uri: http://lawd.info/ontology/ +- namespace: http://purl.org/vocab/lifecycle/schema# + prefix: lcy + title: Lifecycle Schema + uri: http://purl.org/vocab/lifecycle/schema +- namespace: http://www.w3.org/ns/ldp# + prefix: ldp + title: Linked Data Platform + uri: http://www.w3.org/ns/ldp# +- namespace: http://purl.oclc.org/NET/ldr/ns# + prefix: ldr + title: Linked Data Rights (LDR) + uri: http://purl.oclc.org/NET/ldr/ns# +- namespace: http://linked.opendata.cz/ontology/ldvm/ + prefix: ldvm + title: Vocabulary for Linked Data Visualization Model + uri: http://linked.opendata.cz/ontology/ldvm/ +- namespace: http://lemon-model.net/lemon# + prefix: lemon + title: LExicon Model for ONtologies + uri: http://lemon-model.net/lemon +- namespace: http://www.lexinfo.net/ontology/2.0/lexinfo# + prefix: lexinfo + title: LexInfo Ontology + uri: http://www.lexinfo.net/ontology/2.0/lexinfo +- namespace: http://purl.org/library/ + prefix: lib + title: Library extension of schema.org + uri: http://purl.org/library/ +- namespace: http://purl.org/vocab/lifecycle/schema# + prefix: lifecycle + title: IoT-Lifecycle + uri: http://www.irit.fr/recherches/MELODI/ontologies/IoT-Lifecycle +- namespace: http://purl.org/limo-ontology/limo# + prefix: limo + title: Linked Statistical Models Vocabulary + uri: http://purl.org/limo-ontology/limo/ +- namespace: http://purl.org/LiMo/0.1# + prefix: limoo + title: License Model Ontology + uri: http://purl.org/LiMo/0.1# +- namespace: https://w3id.org/vocab/lingvoj# + prefix: lingvo + title: The Lingvoj Ontology + uri: https://w3id.org/vocab/lingvoj +- namespace: http://purl.org/net/lio# + prefix: lio + title: Lightweight Image Ontology + uri: http://purl.org/net/lio +- namespace: http://www.linklion.org/ontology# + prefix: llont + title: LinkLion - the Link Discovery Portal + uri: http://www.linklion.org/ontology +- namespace: http://www.ontologydesignpatterns.org/ont/lmm/LMM_L1.owl# + prefix: lmm1 + title: Lexical MetaModel Level 1 + uri: http://www.ontologydesignpatterns.org/ont/lmm/LMM_L1.owl +- namespace: http://www.ontologydesignpatterns.org/ont/lmm/LMM_L2.owl# + prefix: lmm2 + title: Lexical MetaModel Level 2 + uri: http://www.ontologydesignpatterns.org/ont/lmm/LMM_L2.owl +- namespace: http://purl.org/ctic/infraestructuras/localizacion# + prefix: loc + title: Location Vocabulary + uri: http://purl.org/ctic/infraestructuras/localizacion +- namespace: http://data.archiveshub.ac.uk/def/ + prefix: locah + title: The LOCAH RDF Vocabulary + uri: http://data.archiveshub.ac.uk/def/ +- namespace: http://www.w3.org/ns/locn# + prefix: locn + title: ISA Programme Location Core Vocabulary + uri: http://www.w3.org/ns/locn +- namespace: http://linkedevents.org/ontology/ + prefix: lode + title: Linking Open Descriptions of Events + uri: http://linkedevents.org/ontology/ +- namespace: http://www.w3.org/2000/10/swap/log# + prefix: log + title: SWAP Logic Ontology + uri: http://www.w3.org/2000/10/swap/log +- namespace: http://data.opendiscoveryspace.eu/lom_ontology_ods.owl# + prefix: lom + title: Learning Object Metadata Ontology + uri: http://data.opendiscoveryspace.eu/lom_ontology_ods.owl +- namespace: http://sparql.sstu.ru:3030/speciality/ + prefix: losp + title: Linked open specialities RF + uri: http://sparql.sstu.ru:3030/speciality/ +- namespace: http://linkedscience.org/lsc/ns# + prefix: lsc + title: Linked Science Core Vocabulary + uri: http://linkedscience.org/lsc/ns# +- namespace: http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-lifemapper.owl# + prefix: lslife + title: ELSEWeb Lifemapper Ontology + uri: http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-lifemapper.owl +- namespace: http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-data.owl# + prefix: lsmap + title: ELSEWeb Mappings Ontology + uri: http://ontology.cybershare.utep.edu/ELSEWeb/mappings/elseweb-mappings.owl +- namespace: http://lsq.aksw.org/vocab# + prefix: lsq + title: The Linked SPARQL Queries Vocabulary (LSQ(V)) + uri: http://lsq.aksw.org/vocab +- namespace: http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-data.owl# + prefix: lsweb + title: ELSEWeb Data Ontology + uri: http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-data.owl +- namespace: http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-modelling.owl# + prefix: lswmo + title: ELSEWeb Modelling Ontology + uri: http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-modelling.owl +- namespace: http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-lifemapper-parameters.owl# + prefix: lswpm + title: ELSEWeb Lifemapper Parameters Ontology + uri: http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-lifemapper-parameters.owl +- namespace: http://ns.inria.fr/ludo + prefix: ludo + title: Ludo Ontology + uri: http://ns.inria.fr/ludo +- namespace: http://purl.org/lobid/lv# + prefix: lv + title: lobid vocab + uri: http://purl.org/lobid/lv +- namespace: http://purl.org/linkingyou/ + prefix: lyou + title: Linking-you vocabulary + uri: http://purl.org/linkingyou/ +- namespace: http://purl.org/iot/vocab/m3-lite# + prefix: m3lite + title: The Machine-to-Machine Measurement (M3) Lite Ontology + uri: http://purl.org/iot/vocab/m3-lite# +- namespace: http://www.w3.org/ns/ma-ont# + prefix: ma-ont + title: Ontology for Media Resources + uri: http://www.w3.org/ns/ma-ont +- namespace: http://www.loc.gov/mads/rdf/v1# + prefix: mads + title: Metadata Authority Description Schema + uri: http://www.loc.gov/mads/rdf/v1 +- namespace: http://www.gsi.dit.upm.es/ontologies/marl/ns# + prefix: marl + title: Marl Ontology Specification + uri: http://www.gsi.dit.upm.es/ontologies/marl/ns +- namespace: http://securitytoolbox.appspot.com/MASO# + prefix: maso + title: Mobile Agents Security + uri: http://securitytoolbox.appspot.com/MASO +- namespace: https://w3id.org/multidimensional-interface/ontology# + prefix: mdi + title: RDF vocabulary to describe a Multidimensional Interface. + uri: https://w3id.org/multidimensional-interface/ontology +- namespace: http://purl.org/media# + prefix: media + title: The Media RDF Vocabulary + uri: http://purl.org/media +- namespace: http://w3id.org/medred/medred# + prefix: medred + title: 'MedRed ontology: clinical data acquisition model' + uri: http://w3id.org/medred/medred# +- namespace: http://mex.aksw.org/mex-algo# + prefix: mexalgo + title: MEX Algorithm Ontology + uri: http://mex.aksw.org/mex-algo +- namespace: http://mex.aksw.org/mex-core# + prefix: mexcore + title: MEX Core Vocabulary + uri: http://mex.aksw.org/mex-core +- namespace: http://mex.aksw.org/mex-perf# + prefix: mexperf + title: MEX Performance Ontology + uri: http://mex.aksw.org/mex-perf +- namespace: http://www.w3.org/ns/mls# + prefix: mls + title: Machine Learning Schema + uri: http://www.w3.org/ns/mls +- namespace: http://purl.org/ontology/mo/ + prefix: mo + title: Music Ontology + uri: http://purl.org/ontology/mo/ +- namespace: http://observedchange.com/moac/ns# + prefix: moac + title: Management of a Crisis Vocabulary + uri: http://www.observedchange.com/moac/ns# +- namespace: http://www.isibang.ac.in/ns/mod# + prefix: mod + title: 'MOD: Metadata for Ontology Description and publication' + uri: http://www.isibang.ac.in/ns/mod +- namespace: https://w3id.org/skgo/modsci# + prefix: modsci + title: ModSci, Modern Science Ontology. + uri: https://w3id.org/skgo/modsci# +- namespace: http://id.loc.gov/vocabulary/relators/ + prefix: mrel + title: MARC Code List for Relators + uri: http://id.loc.gov/vocabulary/relators +- namespace: http://iserve.kmi.open.ac.uk/ns/msm# + prefix: msm + title: Minimal Service Model + uri: http://iserve.kmi.open.ac.uk/ns/msm +- namespace: http://www.ics.forth.gr/isl/MarineTLO/v4/marinetlo.owl# + prefix: mtlo + title: MarineTLO Ontology + uri: http://www.ics.forth.gr/isl/MarineTLO/v4/marinetlo.owl +- namespace: http://ns.inria.fr/munc# + prefix: munc + title: Meta-Uncertainty + uri: http://ns.inria.fr/munc/ +- namespace: http://data.doremus.org/ontology# + prefix: mus + title: DOREMUS is an extension of the FRBRoo model for describing the music. + uri: http://data.doremus.org/ontology# +- namespace: http://www.kanzaki.com/ns/music# + prefix: music + title: Music Vocabulary + uri: http://www.kanzaki.com/ns/music +- namespace: http://purl.org/muto/core# + prefix: muto + title: Modular Unified Tagging Ontology (MUTO) + uri: http://purl.org/muto/core +- namespace: http://schema.mobivoc.org/ + prefix: mv + title: 'MobiVoc: Open Mobility Vocabulary' + uri: http://schema.mobivoc.org/ +- namespace: http://purl.oclc.org/NET/mvco.owl# + prefix: mvco + title: Media Value Chain Ontology + uri: http://purl.oclc.org/NET/mvco.owl +- namespace: http://www.semanticdesktop.org/ontologies/2007/08/15/nao# + prefix: nao + title: NEPOMUK Annotation Ontology + uri: http://www.semanticdesktop.org/ontologies/2007/08/15/nao +- namespace: http://www.semanticdesktop.org/ontologies/2007/04/02/ncal# + prefix: ncal + title: NEPOMUK Calendar Ontology + uri: http://www.semanticdesktop.org/ontologies/2007/04/02/ncal +- namespace: http://www.semanticdesktop.org/ontologies/2007/03/22/nco# + prefix: nco + title: NEPOMUK Contact Ontology + uri: http://www.semanticdesktop.org/ontologies/2007/03/22/nco +- namespace: http://www.semanticdesktop.org/ontologies/2007/03/22/nfo# + prefix: nfo + title: NEPOMUK File Ontology + uri: http://www.semanticdesktop.org/ontologies/2007/03/22/nfo +- namespace: http://geovocab.org/geometry# + prefix: ngeo + title: NeoGeo Geometry Ontology + uri: http://geovocab.org/geometry +- namespace: http://www.semanticdesktop.org/ontologies/2007/01/19/nie# + prefix: nie + title: NEPOMUK Information Element Core Ontology + uri: http://www.semanticdesktop.org/ontologies/2007/01/19/nie +- namespace: http://persistence.uni-leipzig.org/nlp2rdf/ontologies/nif-core# + prefix: nif + title: NLP Interchange Format + uri: http://persistence.uni-leipzig.org/nlp2rdf/ontologies/nif-core# +- namespace: http://lod.nl.go.kr/ontology/ + prefix: nlon + title: National Library of Korea Ontology + uri: http://lod.nl.go.kr/ontology/ +- namespace: https://w3id.org/nno/ontology# + prefix: nno + title: The Neural Network Ontology + uri: https://w3id.org/nno/ontology +- namespace: http://ns.nature.com/terms/ + prefix: npg + title: Nature.com Core Ontology + uri: http://ns.nature.com/terms/ +- namespace: http://www.semanticdesktop.org/ontologies/2007/08/15/nrl# + prefix: nrl + title: NEPOMUK Representational Language + uri: http://www.semanticdesktop.org/ontologies/2007/08/15/nrl +- namespace: http://ns.inria.fr/nrv# + prefix: nrv + title: Normative Requirements Vocabulary + uri: http://ns.inria.fr/nrv +- namespace: http://purl.org/ontology/storyline/ + prefix: nsl + title: A News Storyline Ontology + uri: http://purl.org/ontology/storyline +- namespace: http://ns.inria.fr/nicetag/2010/09/09/voc# + prefix: ntag + title: Nice Tag Ontology + uri: http://ns.inria.fr/nicetag/2010/09/09/voc +- namespace: http://www.w3.org/ns/oa# + prefix: oa + title: Open Annotation Data Model + uri: http://www.w3.org/ns/oa# +- namespace: http://culturalis.org/oad# + prefix: oad + title: Ontology for archival description + uri: http://culturalis.org/oad# +- namespace: http://www.ics.forth.gr/isl/oae/core# + prefix: oae + title: Open NEE Model + uri: http://www.ics.forth.gr/isl/oae/core +- namespace: http://purl.obolibrary.org/obo/ + prefix: obo + title: Ontology for Biomedical Investigation + uri: http://purl.obolibrary.org/obo/obi.owl +- namespace: http://delicias.dia.fi.upm.es/ontologies/ObjectWithStates.owl# + prefix: obws + title: Object with states ontology + uri: http://delicias.dia.fi.upm.es/ontologies/ObjectWithStates.owl +- namespace: http://dati.camera.it/ocd/ + prefix: ocd + title: Ontology of Italian Deputy Chamber + uri: http://dati.camera.it/ocd/ +- namespace: http://purl.org/onto-ocds/ocds# + prefix: ocds + title: Schema for an Open Contracting Release (OCDS) + uri: http://purl.org/onto-ocds/ocds +- namespace: http://vocab.deri.ie/odapp# + prefix: odapp + title: Open Data Applications Vocabulary + uri: http://vocab.deri.ie/odapp +- namespace: http://semweb.mmlab.be/ns/odapps# + prefix: odapps + title: The vocabulary for (L)OD ideas and applications + uri: http://semweb.mmlab.be/ns/odapps +- namespace: http://www.ontologydesignpatterns.org/cp/owl/participation.owl# + prefix: odpart + title: Ontology Design Pattern Participation + uri: http://www.ontologydesignpatterns.org/cp/owl/participation.owl +- namespace: http://www.w3.org/ns/odrl/2/ + prefix: odrl + title: The Open Digital Rights Language (ODRL) Ontology + uri: http://www.w3.org/ns/odrl/2/ +- namespace: http://schema.theodi.org/odrs# + prefix: odrs + title: Open Data Rights Statement Vocabulary + uri: http://schema.theodi.org/odrs +- namespace: http://www.oegov.org/core/owl/cc# + prefix: oecc + title: Extended Creative Commons Ontology + uri: http://www.oegov.org/core/owl/cc +- namespace: http://owlrep.eu01.aws.af.cm/fridge# + prefix: of + title: Open Fridge vocabulary + uri: http://owlrep.eu01.aws.af.cm/fridge +- namespace: http://purl.org/opdm/refrigerator# + prefix: ofrd + title: Fridge and Freezer Vocabulary + uri: http://purl.org/opdm/refrigerator# +- namespace: http://ogp.me/ns# + prefix: og + title: Open Graph Protocol Vocabulary + uri: http://ogp.me/ns +- namespace: http://semweb.mmlab.be/ns/oh# + prefix: oh + title: The Opening Hours vocabulary + uri: http://semweb.mmlab.be/ns/oh +- namespace: https://w3id.org/vocab/olca# + prefix: olca + title: Ontology Loose Coupling Annotation + uri: https://w3id.org/vocab/olca +- namespace: http://purl.org/ontology/olo/core# + prefix: olo + title: Ordered List Ontology + uri: http://purl.org/ontology/olo/core# +- namespace: https://w3id.org/omg# + prefix: omg + title: 'OMG: Ontology for Managing Geometry' + uri: https://w3id.org/omg +- namespace: http://open-multinet.info/ontology/omn# + prefix: omn + title: Open-Multinet Upper Ontology + uri: http://open-multinet.info/ontology/omn +- namespace: http://open-multinet.info/ontology/omn-federation# + prefix: omnfed + title: Open-Multinet Upper Federation Ontology + uri: http://open-multinet.info/ontology/omn-federation +- namespace: http://open-multinet.info/ontology/omn-lifecycle# + prefix: omnlc + title: Open-Multinet Upper Lifecycle Ontology + uri: http://open-multinet.info/ontology/omn-lifecycle +- namespace: http://www.ics.forth.gr/isl/oncm/core# + prefix: onc + title: Open NEE Configuration Model + uri: http://www.ics.forth.gr/isl/oncm/core +- namespace: http://purl.org/net/ns/ontology-annot# + prefix: ont + title: Ontology annotation DLiser vocabulary + uri: http://purl.org/net/ns/ontology-annot +- namespace: http://www.ontologydesignpatterns.org/ont/dul/ontopic.owl# + prefix: ontopic + title: Ontopic Ontology + uri: http://www.ontologydesignpatterns.org/ont/dul/ontopic.owl +- namespace: http://www.semanticweb.org/ontologies/2008/11/OntologySecurity.owl# + prefix: ontosec + title: Ontology Security + uri: http://www.semanticweb.org/ontologies/2008/11/OntologySecurity.owl +- namespace: http://www.gsi.dit.upm.es/ontologies/onyx/ns# + prefix: onyx + title: Onyx Emotion Ontology + uri: http://www.gsi.dit.upm.es/ontologies/onyx/ns +- namespace: http://environment.data.gov.au/def/op# + prefix: op + title: Observable properties + uri: http://environment.data.gov.au/def/op +- namespace: http://ontology.eil.utoronto.ca/open311# + prefix: open311 + title: "Open 311 Ontology: An Ontology for publishing a city's non-emergency events." + uri: http://ontology.eil.utoronto.ca/open311.owl +- namespace: https://w3id.org/opm# + prefix: opm + title: 'OPM: Ontology for Property Management' + uri: https://w3id.org/opm +- namespace: http://openprovenance.org/model/opmo# + prefix: opmo + title: Open Provenance Model + uri: http://openprovenance.org/model/opmo +- namespace: http://purl.org/net/opmv/ns# + prefix: opmv + title: Open Provenance Model Vocabulary + uri: http://purl.org/net/opmv/ns# +- namespace: http://www.opmw.org/ontology/ + prefix: opmw + title: The OPMW Ontology + uri: http://www.opmw.org/ontology/ +- namespace: http://vocab.deri.ie/orca# + prefix: orca + title: orca, the Ontology of Reasoning, Certainty and Attribution + uri: http://vocab.deri.ie/orca +- namespace: http://www.openarchives.org/ore/terms/ + prefix: ore + title: The OAI ORE terms vocabulary + uri: http://www.openarchives.org/ore/terms/ +- namespace: http://www.w3.org/ns/org# + prefix: org + title: Core organization ontology + uri: http://www.w3.org/ns/org# +- namespace: http://datos.gob.es/def/sector-publico/organizacion# + prefix: orges + title: Ontology about Spanish public organizations + uri: http://datos.gob.es/def/sector-publico/organizacion# +- namespace: http://data.ordnancesurvey.co.uk/ontology/admingeo/ + prefix: osadm + title: The administrative geography and civil voting area ontology + uri: http://data.ordnancesurvey.co.uk/ontology/admingeo/ +- namespace: http://data.ordnancesurvey.co.uk/ontology/geometry/ + prefix: osgeom + title: Ordnance Survey Geometry Ontology + uri: http://data.ordnancesurvey.co.uk/ontology/geometry/ +- namespace: http://open-services.net/ns/core# + prefix: oslc + title: OSLC Core Vocabulary + uri: http://open-services.net/ns/core# +- namespace: http://purl.org/oslo/ns/localgov# + prefix: oslo + title: OSLO Exchange Standard + uri: http://purl.org/oslo/ns/localgov +- namespace: http://data.ordnancesurvey.co.uk/ontology/spatialrelations/ + prefix: osspr + title: Spatial Relations Ontology + uri: http://data.ordnancesurvey.co.uk/ontology/spatialrelations/ +- namespace: http://www.ordnancesurvey.co.uk/ontology/Topography/v0.1/Topography.owl# + prefix: ostop + title: Ordnance Survey Topography Ontology + uri: http://www.ordnancesurvey.co.uk/ontology/Topography/v0.1/Topography.owl +- namespace: https://w3id.org/opentrafficlights# + prefix: otl + title: The Open Traffic Lights ontology + uri: https://w3id.org/opentrafficlights +- namespace: http://open.vocab.org/terms/ + prefix: ov + title: OpenVocab + uri: http://open.vocab.org/terms +- namespace: http://www.w3.org/2002/07/owl# + prefix: owl + title: The OWL 2 Schema vocabulary + uri: http://www.w3.org/2002/07/owl +- namespace: http://purl.org/net/p-plan# + prefix: p-plan + title: The P-PLAN Ontology + uri: http://purl.org/net/p-plan# +- namespace: http://purl.org/vocab/participation/schema# + prefix: part + title: Participation Schema + uri: http://purl.org/vocab/participation/schema +- namespace: http://purl.org/hpi/patchr# + prefix: pat + title: Patch Request Ontology + uri: http://purl.org/hpi/patchr# +- namespace: http://www.essepuntato.it/2008/12/pattern# + prefix: pattern + title: The Pattern Ontology + uri: http://www.essepuntato.it/2008/12/pattern +- namespace: http://purl.org/pav/ + prefix: pav + title: Provenance, Authoring and Versioning + uri: http://purl.org/pav/ +- namespace: http://purl.org/ontology/pbo/core# + prefix: pbo + title: Play Back Ontology + uri: http://purl.org/ontology/pbo/core# +- namespace: http://purl.org/procurement/public-contracts# + prefix: pc + title: Public Contracts Ontology + uri: http://purl.org/procurement/public-contracts +- namespace: http://ontologies.smile.deri.ie/pdo# + prefix: pdo + title: Project Documents Ontology + uri: http://vocab.deri.ie/pdo +- namespace: https://w3id.org/pep/ + prefix: pep + title: Process Execution ontology. + uri: https://w3id.org/pep/ +- namespace: http://www.w3.org/ns/person# + prefix: person + title: ISA Programme Person Core Vocabulary + uri: http://www.w3.org/ns/person +- namespace: http://www.ontotext.com/proton/protonext# + prefix: pext + title: PROTON Extent module + uri: http://www.ontotext.com/proton/protonext +- namespace: https://w3id.org/pfeepsa# + prefix: pfeepsa + title: The PFEEPSA Ontology. + uri: https://w3id.org/pfeepsa# +- namespace: http://data.cochrane.org/ontologies/pico/ + prefix: pico + title: Cochrane PICO Ontology + uri: http://data.cochrane.org/ontologies/pico/ +- namespace: http://purl.org/ontology/places# + prefix: place + title: The Places Ontology + uri: http://purl.org/ontology/places +- namespace: http://cedric.cnam.fr/isid/ontologies/PersonLink.owl# + prefix: plink + title: PersonLink Ontology + uri: http://cedric.cnam.fr/isid/ontologies/PersonLink.owl +- namespace: http://purl.org/net/po# + prefix: plo + title: Playlist Ontology + uri: http://purl.org/net/po# +- namespace: http://premon.fbk.eu/ontology/fn# + prefix: pmofn + title: Predicate Model for Ontologies (PreMOn) - FrameNet ontology module + uri: http://premon.fbk.eu/ontology/fn +- namespace: http://premon.fbk.eu/ontology/nb# + prefix: pmonb + title: Predicate Model for Ontologies (PreMOn) - NomBank ontology module + uri: http://premon.fbk.eu/ontology/nb +- namespace: http://premon.fbk.eu/ontology/pb# + prefix: pmopb + title: Predicate Model for Ontologies (PreMOn) - PropBank ontology module + uri: http://premon.fbk.eu/ontology/pb +- namespace: http://premon.fbk.eu/ontology/vn# + prefix: pmovn + title: Predicate Model for Ontologies (PreMOn) - VerbNet ontology module + uri: http://premon.fbk.eu/ontology/vn +- namespace: http://purl.org/ontology/po/ + prefix: po + title: Programmes ontology + uri: http://purl.org/ontology/po/ +- namespace: http://dev.poderopedia.com/vocab/ + prefix: poder + title: Poder Vocabulary + uri: http://dev.poderopedia.com/vocab/schema +- namespace: http://data.ordnancesurvey.co.uk/ontology/postcode/ + prefix: postcode + title: Postcode Ontology + uri: http://data.ordnancesurvey.co.uk/ontology/postcode/ +- namespace: http://vocab.deri.ie/ppo# + prefix: ppo + title: Privacy Preference Ontology + uri: http://vocab.deri.ie/ppo +- namespace: http://contsem.unizar.es/def/sector-publico/pproc# + prefix: pproc + title: PPROC ontology + uri: http://contsem.unizar.es/def/sector-publico/pproc +- namespace: http://purl.org/ontology/prv/core# + prefix: pr + title: Property Reification Vocabulary + uri: http://purl.org/ontology/prv/core# +- namespace: http://www.loc.gov/premis/rdf/v1# + prefix: premis + title: PREMIS Ontology + uri: http://www.loc.gov/premis/rdf/v1 +- namespace: http://ns.inria.fr/prissma/v2# + prefix: prissma + title: Presentation of Resources for Interoperable Semantic and Shareable Mobile Adaptability + uri: http://ns.inria.fr/prissma/v2# +- namespace: http://purl.org/spar/pro/ + prefix: pro + title: The Publishing Roles Ontology + uri: http://purl.org/spar/pro +- namespace: http://www.w3.org/ns/dx/prof/ + prefix: prof + title: Profiles Vocabulary + uri: http://www.w3.org/ns/dx/prof +- namespace: http://www.w3.org/ns/prov# + prefix: prov + title: W3C PROVenance Interchange + uri: http://www.w3.org/ns/prov# +- namespace: http://ns.inria.fr/provoc# + prefix: provoc + title: Product Vocabulary + uri: http://ns.inria.fr/provoc +- namespace: http://purl.org/net/provenance/ns# + prefix: prv + title: Provenance Vocabulary Core Ontology + uri: http://purl.org/net/provenance/ns# +- namespace: http://purl.org/net/provenance/types# + prefix: prvt + title: Provenance Vocabulary types + uri: http://purl.org/net/provenance/types# +- namespace: http://purl.org/spar/pso/ + prefix: pso + title: The Publishing Status Ontology + uri: http://purl.org/spar/pso +- namespace: http://www.ontotext.com/proton/protontop# + prefix: ptop + title: PROTON (Proto Ontology), Top Module + uri: http://www.ontotext.com/proton/protontop +- namespace: https://vocab.eccenca.com/pubsub/ + prefix: pubsub + title: Eccenca Publish-Subscribe Vocabulary + uri: https://vocab.eccenca.com/pubsub/ +- namespace: http://purl.org/spar/pwo/ + prefix: pwo + title: The Publishing Workflow Ontology + uri: http://purl.org/spar/pwo +- namespace: http://purl.org/linked-data/cube# + prefix: qb + title: The data cube vocabulary + uri: http://purl.org/linked-data/cube +- namespace: http://purl.org/qb4olap/cubes# + prefix: qb4o + title: Vocabulary for publishing OLAP data cubes + uri: http://purl.org/qb4olap/cubes +- namespace: http://purl.oclc.org/NET/ssnx/qu/qu# + prefix: qu + title: Quantity Kinds and Units + uri: http://purl.oclc.org/NET/ssnx/qu/qu +- namespace: http://qudt.org/schema/qudt/ + prefix: qudt + title: Quantities, Units, Dimensions and Types + uri: http://qudt.org/schema/qudt +- namespace: https://w3id.org/arco/ontology/arco/ + prefix: r-arco + title: ArCo Ontology (ArCo network) + uri: https://w3id.org/arco/ontology/arco +- namespace: http://guava.iis.sinica.edu.tw/r4r/ + prefix: r4r + title: Relations for Reusing (R4R) Ontology + uri: http://guava.iis.sinica.edu.tw/r4r +- namespace: http://www.w3.org/ns/radion# + prefix: radion + title: Repository Asset Distribution + uri: http://www.w3.org/ns/radion# +- namespace: http://iais.fraunhofer.de/vocabs/rami# + prefix: rami + title: rami - Reference Architecture Model + uri: https://w3id.org/i40/rami/ +- namespace: http://purl.org/NET/raul# + prefix: raul + title: RAUL Vocabulary + uri: http://vocab.deri.ie/raul +- namespace: http://rdvocab.info/uri/schema/FRBRentitiesRDA/ + prefix: rdafrbr + title: FRBR Entities for RDA + uri: http://rdvocab.info/uri/schema/FRBRentitiesRDA +- namespace: http://rdvocab.info/Elements/ + prefix: rdag1 + title: RDA Group 1 Elements + uri: http://rdvocab.info/Elements +- namespace: http://rdvocab.info/ElementsGr2/ + prefix: rdag2 + title: RDA Group 2 Elements + uri: http://rdvocab.info/ElementsGr2 +- namespace: http://rdvocab.info/ElementsGr3/ + prefix: rdag3 + title: RDA Group 3 Elements + uri: http://rdvocab.info/ElementsGr3 +- namespace: http://rdvocab.info/RDARelationshipsWEMI/ + prefix: rdarel + title: RDA Relationships for Works, Expressions, Manifestations, Items + uri: http://rdvocab.info/RDARelationshipsWEMI +- namespace: http://metadataregistry.org/uri/schema/RDARelationshipsGR2/ + prefix: rdarel2 + title: RDA Relationships GR2 + uri: http://metadataregistry.org/uri/schema/RDARelationshipsGR2 +- namespace: http://rdvocab.info/roles/ + prefix: rdarole + title: RDA Roles + uri: http://rdvocab.info/roles +- namespace: http://www.w3.org/1999/02/22-rdf-syntax-ns# + prefix: rdf + title: The RDF Concepts Vocabulary + uri: http://www.w3.org/1999/02/22-rdf-syntax-ns# +- namespace: http://www.w3.org/ns/rdfa# + prefix: rdfa + title: RDFa Vocabulary for Term and Prefix Assignment, and for Processor Graph Reporting + uri: http://www.w3.org/ns/rdfa# +- namespace: http://www.w3.org/2004/03/trix/rdfg-1/ + prefix: rdfg + title: Graph + uri: http://www.w3.org/2004/03/trix/rdfg-1/ +- namespace: https://w3id.org/rdfp/ + prefix: rdfp + title: The RDF Presentation ontology + uri: https://w3id.org/rdfp/ +- namespace: http://www.w3.org/2000/01/rdf-schema# + prefix: rdfs + title: The RDF Schema vocabulary + uri: http://www.w3.org/2000/01/rdf-schema# +- namespace: http://purl.org/ontology/rec/core# + prefix: rec + title: Recommendation Ontology + uri: http://purl.org/ontology/rec/core# +- namespace: http://www.w3.org/2001/02pd/rec54# + prefix: rec54 + title: Model of the W3C Process + uri: http://www.w3.org/2001/02pd/rec54# +- namespace: http://purl.org/reco# + prefix: reco + title: RECommendations Ontology + uri: http://purl.org/reco# +- namespace: http://reegle.info/schema# + prefix: reegle + title: Renewable Energy and Energy Efficiency + uri: http://reegle.info/schema +- namespace: http://purl.org/vocab/relationship/ + prefix: rel + title: Relationship + uri: http://purl.org/vocab/relationship/ +- namespace: http://www.purl.org/net/remetca# + prefix: remetca + title: ReMetCa Ontology + uri: http://www.purl.org/net/remetca# +- namespace: http://purl.org/stuff/rev# + prefix: rev + title: Review Vocabulary + uri: http://purl.org/stuff/rev# +- namespace: http://persistence.uni-leipzig.org/nlp2rdf/ontologies/rlog# + prefix: rlog + title: RDF Logging Ontology + uri: http://persistence.uni-leipzig.org/nlp2rdf/ontologies/rlog# +- namespace: http://purl.org/wf4ever/ro# + prefix: ro + title: The Research Object Ontology + uri: http://purl.org/wf4ever/ro +- namespace: http://vocab.deri.ie/rooms# + prefix: rooms + title: Buildings and Rooms Vocabulary + uri: http://vocab.deri.ie/rooms +- namespace: http://www.w3.org/ns/regorg# + prefix: rov + title: Registered Organization Vocabulary + uri: http://www.w3.org/ns/regorg +- namespace: http://www.w3.org/ns/r2rml# + prefix: rr + title: RDB to RDF Mapping Language Schema + uri: http://www.w3.org/ns/r2rml# +- namespace: http://softeng.polito.it/rsctx# + prefix: rsctx + title: Recommender System Context + uri: http://softeng.polito.it/rsctx +- namespace: http://purl.org/rss/1.0/ + prefix: rss + title: Vocabulary for Rich Site Summary (RSS) 1.0 + uri: http://purl.org/rss/1.0 +- namespace: http://purl.org/imbi/ru-meta.owl# + prefix: ru + title: Representational Units Metadata Ontology + uri: http://purl.org/imbi/ru-meta.owl +- namespace: http://rdfunit.aksw.org/ns/core# + prefix: ruto + title: Test-Driven Data Debugging Ontology + uri: http://rdfunit.aksw.org/ns/core# +- namespace: http://ns.inria.fr/s4ac/v2# + prefix: s4ac + title: Social Semantic SPARQL Security For Access Control Ontology + uri: http://ns.inria.fr/s4ac/v2 +- namespace: https://w3id.org/def/saref4bldg# + prefix: s4bldg + title: SAREF extension for building devices + uri: https://w3id.org/def/saref4bldg +- namespace: https://w3id.org/saref4ee# + prefix: s4ee + title: 'SAREF4EE: the EEbus/Energy@home extension of SAREF' + uri: https://w3id.org/saref4ee +- namespace: http://dati.san.beniculturali.it/SAN/ + prefix: san-lod + title: SAN Ontologia + uri: http://dati.san.beniculturali.it/SAN/ +- namespace: https://w3id.org/saref# + prefix: saref + title: 'SAREF: the Smart Appliances REFerence ontology' + uri: https://w3id.org/saref +- namespace: https://w3id.org/def/saref4agri# + prefix: saref4agri + title: SAREF extension for Agriculture + uri: https://w3id.org/def/saref4agri +- namespace: http://purl.org/saws/ontology# + prefix: saws + title: Sharing Ancient Wisdoms Ontology + uri: http://purl.org/saws/ontology +- namespace: http://schema.org/ + prefix: schema + title: Schema.org vocabulary + uri: http://schema.org/ +- namespace: http://lod.taxonconcept.org/ontology/sci_people.owl# + prefix: scip + title: Scientific People Ontology + uri: http://lod.taxonconcept.org/ontology/sci_people.owl +- namespace: http://purl.org/spar/scoro/ + prefix: scoro + title: Scholarly Contributions and Roles Ontology + uri: http://purl.org/spar/scoro/ +- namespace: http://rdfs.org/scot/ns# + prefix: scot + title: Social Semantic Cloud of Tags + uri: http://rdfs.org/scot/ns# +- namespace: http://purl.org/NET/scovo# + prefix: scovo + title: The Statistical Core Vocabulary + uri: http://vocab.deri.ie/scovo +- namespace: http://purl.org/NET/schema-org-csv# + prefix: scsv + title: Schema.org CSV + uri: http://vocab.deri.ie/scsv +- namespace: http://www.w3.org/ns/sparql-service-description# + prefix: sd + title: SPARQL 1.1 Service Description + uri: http://www.w3.org/ns/sparql-service-description +- namespace: https://w3id.org/vocab/sdm# + prefix: sdm + title: SPARQL endpoint metadata + uri: https://w3id.org/vocab/sdm +- namespace: http://purl.org/linked-data/sdmx# + prefix: sdmx + title: SDMX-RDF vocabulary + uri: http://purl.org/linked-data/sdmx +- namespace: http://purl.org/linked-data/sdmx/2009/code# + prefix: sdmx-code + title: SDMX Code + uri: http://purl.org/linked-data/sdmx/2009/code +- namespace: http://purl.org/linked-data/sdmx/2009/dimension# + prefix: sdmx-dimension + title: SDMX Dimension + uri: http://purl.org/linked-data/sdmx/2009/dimension +- namespace: http://sindice.com/vocab/search# + prefix: search + title: Sindice Search Vocabulary + uri: http://vocab.deri.ie/search +- namespace: https://w3id.org/seas/ + prefix: seas + title: SEAS ontology + uri: https://w3id.org/seas/ +- namespace: https://w3id.org/seas/ + prefix: seas-eval + title: The SEAS Evaluation ontology + uri: https://w3id.org/seas/EvaluationOntology +- namespace: https://w3id.org/seas/ + prefix: seas-op + title: The SEAS Failable System ontology + uri: https://w3id.org/seas/OperatingOntology +- namespace: https://w3id.org/seas/ + prefix: seas-qudt + title: QUDT Alignment. + uri: https://w3id.org/seas/QUDTAlignment +- namespace: https://w3id.org/seas/ + prefix: seas-stats + title: The SEAS Statistics ontology. + uri: https://w3id.org/seas/StatisticsOntology +- namespace: https://w3id.org/seas/ + prefix: seas-sys + title: The SEAS System ontology + uri: https://w3id.org/seas/SystemOntology +- namespace: https://w3id.org/seas/ + prefix: seasb + title: The SEAS Battery ontology. + uri: https://w3id.org/seas/BatteryOntology +- namespace: https://w3id.org/seas/ + prefix: seasbo + title: The SEAS Building Ontology + uri: https://w3id.org/seas/BuildingOntology +- namespace: https://w3id.org/seas/ + prefix: seasd + title: The SEAS Device ontology + uri: https://w3id.org/seas/DeviceOntology +- namespace: https://w3id.org/seas/ + prefix: seasfo + title: The SEAS Forecasting ontology + uri: https://w3id.org/seas/ForecastingOntology +- namespace: https://w3id.org/seas/ + prefix: seast + title: The SEAS Time Ontology. + uri: https://w3id.org/seas/TimeOntology +- namespace: https://w3id.org/seas/ + prefix: seasto + title: The SEAS Trading ontology + uri: https://w3id.org/seas/TradingOntology +- namespace: http://securitytoolbox.appspot.com/securityMain# + prefix: security + title: Security Ontology + uri: http://securitytoolbox.appspot.com/securityMain +- namespace: http://semanticweb.cs.vu.nl/2009/11/sem/ + prefix: sem + title: The SEM Ontology + uri: http://semanticweb.cs.vu.nl/2009/11/sem/ +- namespace: http://purl.org/SemSur/ + prefix: semsur + title: The Semantic Survey Ontology (semsur) + uri: http://purl.org/SemSur/ +- namespace: http://purl.org/seo/ + prefix: seo + title: The Scientific Events Ontology + uri: http://purl.org/seo/ +- namespace: http://www.ontologydesignpatterns.org/cp/owl/sequence.owl# + prefix: seq + title: Sequence Pattern + uri: http://www.ontologydesignpatterns.org/cp/owl/sequence.owl +- namespace: http://purl.org/ontology/service# + prefix: service + title: The Service Ontology + uri: http://purl.org/ontology/service +- namespace: http://www.opengis.net/ont/sf# + prefix: sf + title: Simplified Features Geometry + uri: http://www.opengis.net/ont/sf +- namespace: http://www.w3.org/ns/shacl# + prefix: sh + title: W3C Shapes Constraint Language (SHACL) Vocabulary + uri: http://www.w3.org/ns/shacl# +- namespace: http://dati.cdec.it/lod/shoah/ + prefix: shoah + title: Shoah Vocabulary Specification + uri: http://dati.cdec.it/lod/shoah/ +- namespace: http://paul.staroch.name/thesis/SmartHomeWeather.owl# + prefix: shw + title: Smart Home Weather + uri: http://paul.staroch.name/thesis/SmartHomeWeather.owl# +- namespace: http://purl.org/ontology/similarity/ + prefix: sim + title: The Similarity Ontology + uri: http://purl.org/ontology/similarity/ +- namespace: http://semanticscience.org/resource/ + prefix: sio + title: Semanticscience Integrated Ontology + uri: http://semanticscience.org/ontology/sio.owl +- namespace: http://rdfs.org/sioc/ns# + prefix: sioc + title: Semantically-Interlinked Online Communities + uri: http://rdfs.org/sioc/ns# +- namespace: http://www.ontologydesignpatterns.org/cp/owl/situation.owl# + prefix: situ + title: Situation Pattern + uri: http://www.ontologydesignpatterns.org/cp/owl/situation.owl +- namespace: http://www.w3.org/2004/02/skos/core# + prefix: skos + title: Simple Knowledge Organization System + uri: http://www.w3.org/2004/02/skos/core +- namespace: http://www.w3.org/2008/05/skos-xl# + prefix: skosxl + title: SKOS eXtension for Labels + uri: http://www.w3.org/2008/05/skos-xl +- namespace: http://www.w3.org/ns/solid/terms# + prefix: solid + title: Solid terms + uri: http://www.w3.org/ns/solid/terms +- namespace: http://purl.org/net/soron/ + prefix: sor + title: 'SORON: Social Relationships ONtology' + uri: http://purl.org/net/soron +- namespace: http://www.w3.org/ns/sosa/ + prefix: sosa + title: Sensor, Observation, Sample, and Actuator (SOSA) Ontology + uri: http://www.w3.org/ns/sosa/ +- namespace: http://spinrdf.org/sp# + prefix: sp + title: SPIN SPARQL Syntax + uri: http://spinrdf.org/sp +- namespace: http://geovocab.org/spatial# + prefix: spatial + title: NeoGeo Spatial Ontology + uri: http://geovocab.org/spatial +- namespace: http://kmi.open.ac.uk/projects/smartproducts/ontologies/food.owl# + prefix: spfood + title: SmartProducts Food Domain Model + uri: http://kmi.open.ac.uk/projects/smartproducts/ontologies/food.owl +- namespace: http://spinrdf.org/spin# + prefix: spin + title: SPIN Inferencing Vocabulary + uri: http://spinrdf.org/spin +- namespace: http://www.bbc.co.uk/ontologies/sport/ + prefix: sport + title: BBC Sport Ontology + uri: http://www.bbc.co.uk/ontologies/sport +- namespace: http://spitfire-project.eu/ontology/ns/ + prefix: spt + title: SPITFIRE Ontology + uri: http://spitfire-project.eu/ontology/ns +- namespace: http://ns.inria.fr/ast/sql# + prefix: sql + title: SQL Abstract Syntax Trees Vocabulary + uri: http://ns.inria.fr/ast/sql# +- namespace: http://purl.oclc.org/NET/ssnx/ssn# + prefix: ssn + title: Semantic Sensor Network Ontology + uri: http://www.w3.org/2005/Incubator/ssn/ssnx/ssn +- namespace: http://www.w3.org/ns/ssn/ + prefix: ssno + title: Semantic Sensor Network Ontology + uri: http://www.w3.org/ns/ssn/ +- namespace: http://purl.org/ontology/ssso# + prefix: ssso + title: Simple Service Status Ontology + uri: http://purl.org/ontology/ssso +- namespace: http://semweb.mmlab.be/ns/stoptimes# + prefix: st + title: The Stop Times ontology + uri: http://semweb.mmlab.be/ns/stoptimes#Ontology +- namespace: http://securitytoolbox.appspot.com/stac# + prefix: stac + title: 'Security Toolbox : Attacks and Countermeasures' + uri: http://securitytoolbox.appspot.com/stac +- namespace: http://purl.org/net/step# + prefix: step + title: Semantic Trajectory Episodes + uri: http://purl.org/net/step +- namespace: https://w3id.org/i40/sto# + prefix: sto + title: i40 Standards Lanscape Vocabulary + uri: https://w3id.org/i40/sto# +- namespace: https://w3id.org/survey-ontology# + prefix: sur + title: The Survey Ontology + uri: https://www.w3id.org/survey-ontology +- namespace: https://w3id.org/squap/SoftwareQuality/ + prefix: sw-quality + title: SQuAP Ontology + uri: https://w3id.org/squap/ +- namespace: http://www.w3.org/2004/03/trix/swp-1/ + prefix: swp + title: Graph Authority + uri: http://www.w3.org/2004/03/trix/swp-1 +- namespace: http://swrc.ontoware.org/ontology# + prefix: swrc + title: Semantic Web for Research Communities + uri: http://swrc.ontoware.org/ontology-07 +- namespace: http://www.w3.org/2003/11/swrl# + prefix: swrl + title: Semantic Web Rule Language + uri: http://www.w3.org/2003/11/swrl +- namespace: http://ns.bergnet.org/tac/0.1/triple-access-control# + prefix: tac + title: TripleAccessControl Ontology + uri: http://ns.bergnet.org/tac/0.1/triple-access-control +- namespace: http://vocab.deri.ie/tao# + prefix: tao + title: Trust Assertion Ontology + uri: http://vocab.deri.ie/tao +- namespace: http://purl.org/biodiversity/taxon/ + prefix: taxon + title: TaxonMap Ontology + uri: http://purl.org/biodiversity/taxon/ +- namespace: https://w3id.org/timebank# + prefix: tb + title: Timebank Ontology + uri: https://w3id.org/timebank +- namespace: http://www.w3.org/2006/time-entry# + prefix: te + title: Time Entry + uri: http://www.w3.org/2006/time-entry +- namespace: http://linkedscience.org/teach/ns# + prefix: teach + title: Teaching Core Vocabulary Specification + uri: http://linkedscience.org/teach/ns# +- namespace: http://www.w3.org/2006/03/test-description# + prefix: test + title: Test Metadata + uri: http://www.w3.org/2006/03/test-description +- namespace: https://privatealpha.com/ontology/transformation/1# + prefix: tfo + title: Transformation Functions Ontology + uri: https://privatealpha.com/ontology/transformation/1# +- namespace: http://purl.org/theatre# + prefix: theatre + title: Theatre Ontology + uri: http://purl.org/theatre# +- namespace: http://resource.geosciml.org/ontology/timescale/thors# + prefix: thors + title: The Temporal Ordinal Reference Systems + uri: http://resource.geosciml.org/ontology/timescale/thors +- namespace: http://www.ontologydesignpatterns.org/cp/owl/timeinterval.owl# + prefix: ti + title: The Time Interval Pattern + uri: http://www.ontologydesignpatterns.org/cp/owl/timeinterval.owl +- namespace: http://www.w3.org/2006/time# + prefix: time + title: Time Ontology + uri: http://www.w3.org/2006/time +- namespace: http://purl.org/tio/ns# + prefix: tio + title: The Tickets Ontology + uri: http://purl.org/tio/ns# +- namespace: http://www.ontologydesignpatterns.org/cp/owl/timeindexedsituation.owl + prefix: tis + title: Time Indexed Situation + uri: http://www.ontologydesignpatterns.org/cp/owl/timeindexedsituation.owl +- namespace: http://observedchange.com/tisc/ns# + prefix: tisc + title: Open Time and Space Core Vocabulary + uri: http://www.observedchange.com/tisc/ns# +- namespace: http://purl.org/NET/c4dm/timeline.owl# + prefix: tl + title: The Timeline Ontology + uri: http://purl.org/NET/c4dm/timeline.owl +- namespace: http://www.w3.org/2001/sw/hcls/ns/transmed/ + prefix: tmo + title: Translational Medicine Ontology + uri: http://www.w3.org/2001/sw/hcls/ns/transmed/ +- namespace: http://purl.org/toco/ + prefix: toco + title: Toucan Ontology + uri: http://purl.org/toco/ +- namespace: http://data.ign.fr/def/topo# + prefix: topo + title: An ontology for describing territory elements an infrastructure at French Mapping Agency. + uri: http://data.ign.fr/def/topo +- namespace: http://tour-pedia.org/download/tp.owl# + prefix: tp + title: Tourpedia Ontology + uri: http://tour-pedia.org/download/tp.owl +- namespace: http://www.sensormeasurement.appspot.com/ont/transport/traffic# + prefix: traffic + title: Road Traffic Management + uri: http://www.sensormeasurement.appspot.com/ont/transport/traffic +- namespace: http://vocab.org/transit/terms/ + prefix: transit + title: TRANSIT + uri: http://vocab.org/transit/terms/ +- namespace: http://linkeddata.finki.ukim.mk/lod/ontology/tao# + prefix: trao + title: Transport Administration Ontology + uri: http://linkeddata.finki.ukim.mk/lod/ontology/tao# +- namespace: http://rdfs.org/sioc/types# + prefix: tsioc + title: SIOC Types Ontology Module + uri: http://rdfs.org/sioc/types# +- namespace: http://purl.org/net/tsn# + prefix: tsn + title: Territorial Statistical Nomenclature Ontology + uri: http://purl.org/net/tsn# +- namespace: http://purl.org/net/tsnchange# + prefix: tsnc + title: Territorial Statistical Nomenclature Change Ontology + uri: http://purl.org/net/tsnchange# +- namespace: http://www.essepuntato.it/2012/04/tvc/ + prefix: tvc + title: The Time-indexed Value in Context + uri: http://www.essepuntato.it/2012/04/tvc +- namespace: http://lod.taxonconcept.org/ontology/txn.owl# + prefix: txn + title: TaxonConcept Ontology + uri: http://lod.taxonconcept.org/ontology/txn.owl +- namespace: http://www.w3.org/2006/timezone# + prefix: tzont + title: Time Zone Ontology + uri: http://www.w3.org/2006/timezone +- namespace: http://purl.org/olia/ubyCat.owl# + prefix: uby + title: ubyCat.owl + uri: http://purl.org/olia/ubyCat.owl +- namespace: http://purl.org/uco/ns# + prefix: uco + title: Used Cars Ontology + uri: http://purl.org/uco/ns# +- namespace: http://purl.oclc.org/NET/muo/ucum/ + prefix: ucum + title: Units of measurement ontology + uri: http://purl.oclc.org/NET/muo/ucum/ +- namespace: http://www.w3.org/ns/ui# + prefix: ui + title: A user interface ontology + uri: http://www.w3.org/ns/ui +- namespace: http://purl.org/umu/uneskos# + prefix: uneskos + title: UNESKOS Vocabulary + uri: http://purl.org/umu/uneskos +- namespace: http://purl.uniprot.org/core/ + prefix: uniprot + title: Uniprot Core Ontology + uri: http://purl.uniprot.org/core/ +- namespace: http://uri4uri.net/vocab# + prefix: uri4uri + title: URI Vocabulary + uri: http://uri4uri.net/vocab +- namespace: https://w3id.org/usability# + prefix: usability + title: Usability + uri: https://w3id.org/usability +- namespace: http://www.linkedmodel.org/schema/vaem# + prefix: vaem + title: Vocabulary for Attaching Essential Metadata + uri: http://www.linkedmodel.org/schema/vaem +- namespace: http://www.essepuntato.it/2013/10/vagueness/ + prefix: vag + title: The Vagueness Ontology + uri: http://www.essepuntato.it/2013/10/vagueness +- namespace: http://purl.org/vocab/vann/ + prefix: vann + title: 'VANN: A vocabulary for annotating vocabulary descriptions' + uri: http://purl.org/vocab/vann/ +- namespace: http://www.w3.org/2006/vcard/ns# + prefix: vcard + title: An Ontology for vCards + uri: http://www.w3.org/2006/vcard/ns +- namespace: http://linkeddata.finki.ukim.mk/lod/ontology/veo# + prefix: veo + title: Vehicle Emissions Ontology + uri: http://linkeddata.finki.ukim.mk/lod/ontology/veo# +- namespace: http://purl.org/net/VideoGameOntology# + prefix: vgo + title: The Video Game Ontology + uri: http://purl.org/net/VideoGameOntology +- namespace: http://www.w3.org/TR/2003/PR-owl-guide-20031209/wine# + prefix: vin + title: Wine Ontology + uri: http://www.w3.org/TR/2003/PR-owl-guide-20031209/wine +- namespace: http://w3id.org/vir# + prefix: vir + title: VIR - Visual Representation ontology + uri: http://w3id.org/vir# +- namespace: http://vivoweb.org/ontology/core# + prefix: vivo + title: VIVO Core Ontology + uri: http://vivoweb.org/ontology/core +- namespace: http://purl.org/vocommons/voaf# + prefix: voaf + title: Vocabulary of a Friend + uri: http://purl.org/vocommons/voaf +- namespace: http://w3id.org/rsp/vocals# + prefix: vocals + title: 'VoCaLS: A Vocabulary and Catalog for Linked Streams' + uri: http://w3id.org/rsp/vocals# +- namespace: http://rdfs.org/ns/void# + prefix: void + title: Vocabulary of Interlinked Datasets + uri: http://vocab.deri.ie/void +- namespace: http://purl.org/query/voidext# + prefix: voidext + title: Extended Vocabulary of Interlinked Datasets (VoIDext) + uri: http://purl.org/query/voidext +- namespace: http://www.ics.forth.gr/isl/VoIDWarehouse/VoID_Extension_Schema.owl + prefix: voidwh + title: Void Warehouse Ontology + uri: http://www.ics.forth.gr/isl/VoIDWarehouse/VoID_Extension_Schema.owl +- namespace: http://purl.org/voc/vrank# + prefix: vrank + title: Vocabulary for Ranking + uri: http://vocab.sti2.at/vrank +- namespace: http://www.w3.org/2003/06/sw-vocab-status/ns# + prefix: vs + title: SemWeb Vocab Status ontology + uri: http://www.w3.org/2003/06/sw-vocab-status/ns +- namespace: http://purl.org/vso/ns# + prefix: vso + title: Vehicle Sales Ontology + uri: http://purl.org/vso/ns +- namespace: http://purl.org/vvo/ns# + prefix: vvo + title: Volkswagen Vehicles Ontology + uri: http://purl.org/vvo/ns# +- namespace: https://www.w3.org/ns/ssn/ + prefix: w3c-ssn + title: Semantic Sensor Network Ontology + uri: https://www.w3.org/ns/ssn +- namespace: http://purl.org/wai# + prefix: wai + title: Roles and Profiles Ontology + uri: http://purl.org/wai# +- namespace: http://www.w3.org/2007/05/powder-s# + prefix: wdrs + title: Protocol for Web Description Resources + uri: http://www.w3.org/2007/05/powder-s +- namespace: http://purl.org/net/wf-invocation# + prefix: wf-invoc + title: Workflow Invocation Ontology + uri: http://purl.org/net/wf-invocation +- namespace: http://purl.org/wf4ever/wfdesc# + prefix: wfdesc + title: The Wfdesc ontology + uri: http://purl.org/wf4ever/wfdesc +- namespace: http://purl.org/net/wf-motifs# + prefix: wfm + title: The Workflow Motif Ontology + uri: http://purl.org/net/wf-motifs +- namespace: http://purl.org/wf4ever/wfprov# + prefix: wfprov + title: The Wfprov Ontology + uri: http://purl.org/wf4ever/wfprov +- namespace: http://vocab.org/whisky/terms/ + prefix: whisky + title: Whisky Ontology + uri: http://vocab.org/whisky/terms +- namespace: http://www.kanzaki.com/ns/whois# + prefix: whois + title: Who's who description vocabulary + uri: http://www.kanzaki.com/ns/whois +- namespace: http://purl.org/ontology/wi/core# + prefix: wi + title: The Weighted Interests Vocabulary + uri: http://purl.org/ontology/wi/core# +- namespace: http://www.wsmo.org/ns/wsmo-lite# + prefix: wl + title: WSMO-Lite Ontology + uri: http://www.wsmo.org/ns/wsmo-lite# +- namespace: http://purl.org/ontology/wo/ + prefix: wlo + title: BBC Wildlife Ontology + uri: http://purl.org/ontology/wo/ +- namespace: http://purl.org/ontology/wo/core# + prefix: wo + title: Weighting Ontology + uri: http://purl.org/ontology/wo/core# +- namespace: http://xmlns.com/wot/0.1/ + prefix: wot + title: Web Of Trust + uri: http://xmlns.com/wot/0.1/ +- namespace: https://www.w3.org/2019/wot/security# + prefix: wotsec + title: Security mechanisms for the Web of Things + uri: https://www.w3.org/2019/wot/security# +- namespace: http://purl.org/xapi/ontology# + prefix: xapi + title: xAPI Controlled Vocabulary Ontology + uri: http://purl.org/xapi/ontology# +- namespace: https://w3id.org/vocab/xbrll# + prefix: xbrll + title: A lightweight XBRL vocabulary + uri: https://w3id.org/vocab/xbrll +- namespace: http://www.w3.org/1999/xhtml/vocab# + prefix: xhv + title: XHTML Vocabulary + uri: http://www.w3.org/1999/xhtml/vocab +- namespace: http://www.w3.org/2001/XMLSchema# + prefix: xsd + title: XML Schema + uri: http://www.w3.org/2001/XMLSchema +- namespace: http://zbw.eu/namespaces/zbw-extensions/ + prefix: zbwext + title: ZBW Extensions + uri: http://zbw.eu/namespaces/zbw-extensions +- namespace: http://www4.wiwiss.fu-berlin.de/gutendata/resource/ + prefix: fu-berlin-project-gutenberg + title: Project Gutenberg in RDF (FU Berlin) + uri: http://www4.wiwiss.fu-berlin.de/gutendata/ +- namespace: http://colinda.org/resource/ + prefix: colinda + title: COLINDA - Conference Linked Data + uri: http://colinda.org +- namespace: http://datos.eurohelp.es/PruebasFinales/ + prefix: gipuzkoademografia + title: Gipuzkoa Demografia + uri: http://datahub.io/dataset/GipuzkoaDemografia +- namespace: http://data.totl.net/ + prefix: temple-ov-thee-lemur-datasets + title: Temple ov thee Lemur + uri: http://data.totl.net/ +- namespace: http://curriculum.rkbexplorer.com/id/ + prefix: rkb-explorer-curriculum + title: ReSIST MSc in Resilient Computing Curriculum (RKBExplorer) + uri: http://curriculum.rkbexplorer.com +- namespace: http://linked.opendata.cz/resource/domain/coi.cz/confiscation/ + prefix: cz-ctia-confiscations + title: Confiscations of the Czech Trade Inspection Authority + uri: http://linked.opendata.cz/resource/dataset/coi.cz/zajisteni +- namespace: http://comsode.eu/resource/ + prefix: comsode-d3-2 + title: Requirements on the COMSODE project based on selected datasets + uri: http://comsode.eu/resource/dataset/COMSODE_D3.2 +- namespace: http://diavgeia.math.auth.gr/resource/ + prefix: diavgeia + title: Diavgeia + uri: http://opendata.diavgeia.gov.gr/?lang=en +- namespace: http://purl.org/vocabularies/cornetto/ + prefix: cornetto + title: Cornetto1.2 + uri: http://www2.let.vu.nl/oz/cltl/cornetto/ +- namespace: http://ft.rkbexplorer.com/id/ + prefix: rkb-explorer-ft + title: France Telecom Recherche et DĆ©veloppement (RKBExplorer) + uri: http://ft.rkbexplorer.com +- namespace: http://collection.britishmuseum.org/id/ + prefix: british-museum-collection + title: British Museum Collection + uri: http://collection.britishmuseum.org +- namespace: http://data.bib.uni-mannheim.de/data/ + prefix: ub-mannheim-linked-data + title: Linked Data Service der UniversitƤtsbibliothek Mannheim + uri: http://data.bib.uni-mannheim.de/ +- namespace: http://yago-knowledge.org/resource/ + prefix: yago + title: YAGO + uri: http://yago-knowledge.org +- namespace: http://www.rdfabout.com/rdf/usgov/sec/id/ + prefix: sec-rdfabout + title: U.S. Securities and Exchange Commission Corporate Ownership RDF Data (rdfabout) + uri: http://www.rdfabout.com/demo/sec/ +- namespace: http://crime.rkbexplorer.com/id/ + prefix: rkb-explorer-crime + title: Street level crime reports for England and Wales + uri: http://crime.rkbexplorer.com/ +- namespace: http://ld.panlex.org/plx/ + prefix: panlex + title: PanLex + uri: http://panlex.org +- namespace: http://data.open.ac.uk/resource/ + prefix: data-open-ac-uk + title: data.open.ac.uk, Linked Data from the Open University + uri: http://data.open.ac.uk/ +- namespace: http://www.theses.fr/ + prefix: thesesfr + title: theses.fr + uri: http://www.theses.fr +- namespace: http://rdf.farmbio.uu.se/chembl/ + prefix: farmbio-chembl + title: ChEMBL-RDF (@ Uppsala University) + uri: https://github.com/egonw/chembl.rdf +- namespace: http://eur-lex.publicdata.eu/ontology/ + prefix: eur-lex-rdf + title: EUR-Lex as Linked Data + uri: http://eur-lex.publicdata.eu/ +- namespace: https://linkedsoftwaredependencies.org/ + prefix: npm + title: NPM + uri: https://github.com/LinkedSoftwareDependencies/npm-extraction-server +- namespace: http://www.kanzaki.com/works/2011/stat/ra/ + prefix: japan-radioactivity-stat + title: National Radioactivity Stat as Linked Data + uri: http://www.kanzaki.com/works/2011/stat/ra/ +- namespace: http://www.bedlamtheatre.co.uk/ + prefix: eutc-productions + title: Edinburgh University Theatre Company Productions + uri: http://www.bedlamtheatre.co.uk/ +- namespace: http://zhishi.me/ + prefix: zhishi-me + title: Zhishi.me + uri: http://zhishi.me +- namespace: http://chronos.org/janusamp/ + prefix: oceandrilling-janusamp + title: Ocean Drilling - Janus Age Models + uri: http://chronos.org/janusAmp/ +- namespace: http://nl.dbpedia.org/resource/ + prefix: dbpedia-nl + title: DBpedia in Dutch + uri: http://nl.dbpedia.org +- namespace: http://w3id.org/foodie/atlas/ + prefix: Urban Atlas Dataset + title: Urban Atlas dataset + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://ruian.linked.opendata.cz/resource/ + prefix: cz-cuzk-cadastre-offices + title: Cadastre offices from Czech land registry + uri: http://ruian.linked.opendata.cz/resource/dataset/cuzk/pracoviste-resortu +- namespace: http://id.sgcb.mcu.es/ + prefix: lista-encabezamientos-materia + title: Lista de Encabezamientos de Materia as Linked Open Data + uri: http://id.sgcb.mcu.es +- namespace: http://ineverycrea.net/en/community/ineverycreaargentina + prefix: ineverycrea-argentina + title: IneveryCREA Argentina, la comunidad de la creatividad educativa + uri: http://ineverycrea.net/en/community/ineverycreaargentina +- namespace: Americka Foka + prefix: Uros Susa + title: Legija + uri: http://www.facebook.com +- namespace: http://www.snik.eu/ontology/ + prefix: snik + title: SNIK + uri: https://www.snik.eu +- namespace: http://eumida.publicdata.eu/data/ + prefix: eumida-linked-data + title: EUMIDA as Linked Data + uri: http://eumida.publicdata.eu/ +- namespace: http://www4.wiwiss.fu-berlin.de/drugbank/resource/ + prefix: fu-berlin-drugbank + title: DrugBank + uri: http://www4.wiwiss.fu-berlin.de/drugbank/ +- namespace: http://dartmouth.eagle-i.net/i/ + prefix: eagle-i-dartmouth + title: eagle-i @ Dartmouth College + uri: http://dartmouth.eagle-i.net +- namespace: http://www.yovisto.com/resource + prefix: yovisto + title: Yovisto - academic video search + uri: http://www.yovisto.com/ontology/ +- namespace: http://gnoss.com/comunidad/nextweb + prefix: nextweb-gnoss + title: Next Web, a global knowledge network of semantic technology and Web 3.0 (GNOSS) + uri: http://gnoss.com/comunidad/nextweb +- namespace: http://w3id.org/foodie/open/cz/Soil_maps_BPEJ_WGSc/ + prefix: Soil maps + title: Erosion-endangered soil zones dataset from Czech Republic + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://www.yso.fi/onto/kunnat/ + prefix: finnish-municipalities + title: Finnish municipalities and regional classifications + uri: http://onki.fi/en/browser/overview/kunnat +- namespace: http://mismuseos.net/ + prefix: mismuseos-gnoss + title: Mis Museos, Ć­ndice semĆ”ntico de museos, artistas y obras de arte (GNOSS) + uri: http://mismuseos.net/ +- namespace: http://rae2001.rkbexplorer.com/id/ + prefix: rkb-explorer-rae2001 + title: Research Assessment Exercise 2001 (RKBExplorer) + uri: http://rae2001.rkbexplorer.com +- namespace: http://id.ndl.go.jp/auth/ndlsh/ + prefix: national-diet-library-subject-headings + title: National Diet Library of Japan subject headings + uri: http://id.ndl.go.jp/auth/ndlsh +- namespace: http://linked.opendata.cz/resource/domain/coi.cz/check-action/ + prefix: cz-ctia-inspections + title: Inspections of the Czech Trade Inspection Authority + uri: http://linked.opendata.cz/resource/dataset/coi.cz/kontroly +- namespace: https://linked.opendata.cz/zdroj/datovĆ”-schrĆ”nka/ + prefix: cz-list-of-databoxes + title: List of Czech data boxes + uri: https://linked.opendata.cz/zdroj/datovĆ”-sada/datovĆ©-schrĆ”nky +- namespace: http://www.gutenberg.org/ + prefix: gutenberg + title: Project Gutenberg + uri: http://www.gutenberg.org/ +- namespace: http://data.nku.cz/resource/ + prefix: cz-sao-audited-subjects + title: Audited subjects of Supreme Audit Office of the Czech Republic + uri: http://data.nku.cz/resource/dataset/audited-subjects +- namespace: http://dbtune.org/bbc/peel/ + prefix: dbtune-john-peel-sessions + title: DBTune.org John Peel sessions RDF server + uri: http://dbtune.org/bbc/peel/ +- namespace: http://data.kasabi.com/dataset/un-hazardous-material-numbers + prefix: un-hazardous-numbers + title: UN Hazardous Materials Numbers + uri: http://kasabi.com/dataset/un-hazardous-material-numbers +- namespace: http://red.gnoss.com/en/community/greencompetitiveness + prefix: green-competitiveness-gnoss + title: Green Competitiveness (GNOSS) + uri: http://red.gnoss.com/en/community/greencompetitiveness +- namespace: http://lod.gesis.org/thesoz/ + prefix: gesis-thesoz + title: TheSoz Thesaurus for the Social Sciences (GESIS) + uri: http://lod.gesis.org/thesoz/ +- namespace: http://www.fao.org/aims/aos/fi/taxonomic/ + prefix: FAO species + title: FAO ASFIS classification of biological entities + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://aims.fao.org/aos/jita/ + prefix: jita + title: JITA Classification System of Library and Information Science + uri: http://www.destin-informatique.com/ASKOSI/Wiki.jsp?page=JITA%20Maintenance +- namespace: http://red.gnoss.com/comunidad/buscaempresas + prefix: aegp-spanish-textile-and-clothing-association + title: AEGP, Spanish Textile and Clothing Association + uri: http://red.gnoss.com/comunidad/buscaempresas +- namespace: http://www.yso.fi/onto/yso/ + prefix: yso + title: YSO - General Finnish Ontology + uri: http://finto.fi/yso/ +- namespace: http://opencorporates.com/companies + prefix: opencorporates + title: OpenCorporates - The Open Database Of The Corporate World + uri: http://opencorporates.com/ +- namespace: http://msm.eagle-i.net/i/ + prefix: eagle-i-msm + title: eagle-i @ Morehouse School of Medicine + uri: http://msm.eagle-i.net +- namespace: http://core.kmi.open.ac.uk/data/ + prefix: core + title: CORE - Semantic Similarity of Open Access publications + uri: http://core-project.kmi.open.ac.uk/ +- namespace: http://ja.dbpedia.org/resource/ + prefix: dbpedia-ja + title: DBpedia in Japanese + uri: http://ja.dbpedia.org/ +- namespace: http://rod.eionet.europa.eu + prefix: eea-rod + title: EEA Reporting Obligations Database + uri: http://rod.eionet.europa.eu/ +- namespace: http://d-nb.info/ + prefix: deutsche-nationalbibliografie-dnb + title: Deutsche Nationalbibliografie (DNB) + uri: http://www.dnb.de/EN/lds +- namespace: http://linkeddata.uriburner.com/ + prefix: uriburner + title: URIBurner + uri: http://uriburner.com/ +- namespace: http://linkeddata.ge.imati.cnr.it/resource/ThIST/ + prefix: thist + title: ThIST + uri: http://purl.org/NET/ThISTWebPage +- namespace: http://datos.bcn.cl/recurso/ + prefix: datos-bcn-cl + title: Datos.bcn.cl + uri: https://datos.bcn.cl/es/ +- namespace: pm + prefix: premon + title: PreMOn + uri: http://premon.fbk.eu +- namespace: http://purl.org/science/plasmid/addgene/ + prefix: addgene + title: Addgene + uri: http://www.addgene.org/ +- namespace: http://museos.gnoss.com/comunidad/mismuseos/ + prefix: museosespania-gnoss + title: Museos de EspaƱa, colecciĆ³n de museos pĆŗblicos y privados espaƱoles (GNOSS) + uri: http://museos.gnoss.com/comunidad/mismuseos/ +- namespace: http://institutions.publicdata.eu/# + prefix: eu-institutions + title: Institutions and Bodies of the European Union + uri: http://institutions.publicdata.eu/ +- namespace: http://uccaribe.eagle-i.net/i/ + prefix: eagle-i-uccaribe + title: eagle-i @ Universidad Central del Caribe + uri: http://uccaribe.eagle-i.net +- namespace: http://purl.org/weso/pscs/naics/2007/resource + prefix: naics-2007 + title: NAICS 2007 + uri: http://www.josemalvarez.es/web/2011/11/16/product-scheme-classifications/ +- namespace: https://linked.opendata.cz/zdroj/ovm/ + prefix: cz-ovm + title: Institutions of public power of the Czech Republic + uri: https://linked.opendata.cz/zdroj/datovĆ”-sada/ovm +- namespace: http://data.kasabi.com/dataset/pali-english-lexicon + prefix: pali-english-lexicon + title: Pali English Lexicon + uri: http://kasabi.com/dataset/pali-english-lexicon +- namespace: http://statistics.data.gov.uk/id/ + prefix: statistics-data-gov-uk + title: statistics.data.gov.uk + uri: http://statistics.data.gov.uk/ +- namespace: http://purl.org/ASN/schema/core/ + prefix: asn-us + title: ASN:US + uri: http://asn.jesandco.org +- namespace: http://ibm.rkbexplorer.com/id/ + prefix: rkb-explorer-ibm + title: IBM Research GmbH (RKBExplorer) + uri: http://ibm.rkbexplorer.com +- namespace: https://w3id.org/framester + prefix: framester + title: Framester + uri: https://w3id.org/framester +- namespace: http://eprints.rkbexplorer.com/id/ + prefix: rkb-explorer-eprints + title: ePrints3 Institutional Archive Collection (RKBExplorer) + uri: http://eprints.rkbexplorer.com/ +- namespace: http://purl.org/weso/pscs/cpa/2008/resource + prefix: cpa-2008 + title: CPA 2008 + uri: http://www.josemalvarez.es/web/2011/11/16/product-scheme-classifications/ +- namespace: http://www.icane.es + prefix: icane + title: ICANE + uri: http://www.icane.es/semantic-web +- namespace: http://irit.rkbexplorer.com/id/ + prefix: rkb-explorer-irit + title: UniversitĆ© Paul Sabatier - Toulouse 3 (RKB Explorer) + uri: http://irit.rkbexplorer.com +- namespace: http://lod.taxonconcept.org/ + prefix: taxonconcept + title: TaxonConcept Knowledge Base + uri: http://lod.taxonconcept.org/ +- namespace: http://n-lex.publicdata.eu/ontology + prefix: n-lex-as-linked-data + title: N-Lex as Linked Data + uri: http://n-lex.publicdata.eu/ +- namespace: http://utep.eagle-i.net/i/ + prefix: eagle-i-utep + title: eagle-i @ University of Texas at El Paso + uri: http://utep.eagle-i.net +- namespace: https://bibsonomy.org/ + prefix: BibSonomy + title: BibSonomy - The blue social bookmark and publication sharing system. + uri: https://www.bibsonomy.org/ +- namespace: http://budapest.rkbexplorer.com/id/ + prefix: rkb-explorer-budapest + title: Budapest University of Technology and Economics (RKBExplorer) + uri: http://budapest.rkbexplorer.com/ +- namespace: http://data.nku.cz/resource/ + prefix: cz-sao-check-actions-law + title: List of laws used in inspection reports of SAO + uri: http://data.nku.cz/resource/dataset/check-actions-law +- namespace: http://slod.fiz-karlsruhe.de + prefix: slod + title: Linked Stage Graph + uri: http://slod.fiz-karlsruhe.de/ +- namespace: http://data.linkededucation.org/resource/ + prefix: lak-dataset + title: Learning Analytics and Knowledge (LAK) Dataset + uri: http://www.solaresearch.org/resources/lak-dataset/ +- namespace: Moje Ime je Legija + prefix: Uros Legija Susa + title: Legija Stranaca + uri: http://www.legion-etrangere.com +- namespace: https://data.muziekweb.nl/Link/ + prefix: muziekweb + title: Muziekweb + uri: https://data.muziekweb.nl/ +- namespace: http://data.kasabi.com/dataset/sanskrit-english-lexicon + prefix: sanskrit-english-lexicon + title: Sanskrit English Lexicon + uri: http://kasabi.com/dataset/sanskrit-english-lexicon +- namespace: http://www4.wiwiss.fu-berlin.de/factbook/resource/ + prefix: world-factbook-fu-berlin + title: World Factbook (FU Berlin) + uri: http://www4.wiwiss.fu-berlin.de/factbook/ +- namespace: http://nlg.okfn.gr/resource/authority/ + prefix: national-library-of-greece-authority-records + title: National Library of Greece Authority Records + uri: http://nlg.okfn.gr +- namespace: http://linked.opendata.cz/resource/sukl/medicinal-product-packaging/ + prefix: cz-sidc-drug-prices + title: List of prices of reimbursed medicinal products marketed in Czech republic + uri: http://linked.opendata.cz/resource/dataset/sukl/drug-prices +- namespace: http://purl.org/weso/pscs/cpv/2008/resource + prefix: cpv-2008 + title: CPV 2008 + uri: http://www.josemalvarez.es/web/2011/11/16/product-scheme-classifications/ +- namespace: http://howard.eagle-i.net/i/ + prefix: eagle-i-howard + title: eagle-i @ Howard University + uri: http://howard.eagle-i.net +- namespace: http://psi.oasis-open.org/iso/639/ + prefix: iso-639-oasis + title: Published subjects for languages in ISO 639 + uri: http://psi.oasis-open.org/iso/639/ +- namespace: http://resex.rkbexplorer.com/id/ + prefix: rkb-explorer-resex + title: ReSIST Resilience Mechanisms (RKBExplorer.com) + uri: http://resex.rkbexplorer.com +- namespace: http://stitch.cs.vu.nl/vocabularies/rameau/ + prefix: stitch-rameau + title: RAMEAU subject headings (STITCH) + uri: http://stitch.cs.vu.nl/rameau/ +- namespace: http://finance.data.gov.uk/def/coins/ + prefix: coins-openuplabs + title: OpenUpLabs COINS + uri: http://data.gov.uk/resources/coins +- namespace: http://w3id.org/foodie/olu/ + prefix: Open Land Use + title: Open Land Use + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://id.ndl.go.jp/auth/ndlna/ + prefix: national-diet-library-authorities + title: Web NDL Authorities - National Diet Library of Japan + uri: http://id.ndl.go.jp/auth/ndla +- namespace: http://os.rkbexplorer.com/id/ + prefix: rkb-explorer-os + title: Ordnance Survey (RKBExplorer) + uri: http://os.rkbexplorer.com +- namespace: http://purl.org/collections/nl/am/ + prefix: amsterdam-museum-as-edm-lod + title: Amsterdam Museum as Linked Open Data in the Europeana Data Model + uri: http://semanticweb.cs.vu.nl/lod/am/ +- namespace: http://linked.opendata.cz/resource/domain/irz/ + prefix: cz-cenia-irz-chemicals + title: Chemicals reported to the Integrated register of pollution + uri: http://linked.opendata.cz/resource/dataset/cenia-irz-chemicals +- namespace: http://linked.opendata.cz/resource/es/msssi + prefix: es-msssi-drug-prices + title: List of prices of medicinal products marketed in Kingdom of Spain + uri: http://linked.opendata.cz/resource/dataset/es/msssi/drug-prices +- namespace: http://utsa.eagle-i.net/i/ + prefix: eagle-i-utsa + title: eagle-i @ University of Texas at San Antonio + uri: http://utsa.eagle-i.net +- namespace: http://data.nobelprize.org/resource/ + prefix: nobelprizes + title: Nobel Prizes + uri: http://www.nobelprize.org/nobel_organizations/nobelmedia/nobelprize_org/developer/manual-linkeddata/terms.html +- namespace: http://www4.wiwiss.fu-berlin.de/eccompetition/resource/ + prefix: fu-berlin-ec-competition + title: European Commission Competition data set (FU Berlin) + uri: http://www4.wiwiss.fu-berlin.de/eccompetition/ +- namespace: http://data.linkedopendata.it/scuole/resource/ + prefix: italian-public-schools-linkedopendata-it + title: Italian public schools (LinkedOpenData.it) + uri: http://www.linkedopendata.it/datasets/scuole +- namespace: http:miuras.inf.um.es/ogolod/resource/Gene/67440 + prefix: ogolod + title: Orthology and Diseases Information - OGO + uri: http://miuras.inf.um.es/~ogo/ogolod.html +- namespace: http://sws.geonames.org/ + prefix: geonames-semantic-web + title: GeoNames Semantic Web + uri: http://www.geonames.org/ontology/ +- namespace: http://viaf.org/viaf/ + prefix: viaf + title: 'VIAF: The Virtual International Authority File' + uri: http://viaf.org/viaf/data/ +- namespace: http://bibliotecaescolardigital.es + prefix: biblioteca-escolar-digital-cita + title: Biblioteca Escolar Digital CITA + uri: http://red.gnoss.com/comunidad/Biblioteca-Escolar-Digital +- namespace: http://linked.opendata.cz/resource/domain/vavai/ + prefix: cz-vavai-projects + title: R&D Projects + uri: http://linked.opendata.cz/resource/dataset/vavai/projects +- namespace: http://deusto.gnoss.com/en/community/deustoEntrepreneurship + prefix: deustoentrepreneurship + title: 'Deusto Entrepreneurship: sharing business knowledge' + uri: http://deusto.gnoss.com/en/community/deustoEntrepreneurship +- namespace: http://linkedlifedata.com/resource/ + prefix: linked-life-data + title: Linked Life Data + uri: http://linkedlifedata.com/ +- namespace: http://lov.okfn.org/dataset/lov/lov# + prefix: linked-open-vocabularies-lov + title: Linked Open Vocabularies (LOV) + uri: http://lov.okfn.org/dataset/lov/index.html +- namespace: http://webisa.webdatacommons.org/ + prefix: webisalod + title: WebIsALOD + uri: http://webisa.webdatacommons.org +- namespace: https://betweenourworlds.org/ + prefix: betweenourworlds + title: Between Our Worlds + uri: https://betweenourworlds.org +- namespace: http://linked.opendata.cz/resource/sukl/medicinal-product-packaging/ + prefix: cz-sidc-drugs + title: Medicinal products marketed in Czech Republic + uri: http://linked.opendata.cz/resource/dataset/sukl/drugs +- namespace: https://w3id.org/jp-textbook/ + prefix: jp-textbook + title: Japanese Textbook LOD + uri: https://w3id.org/jp-textbook/ +- namespace: http://www.surgeradio.co.uk/ + prefix: surge-radio + title: Surge Radio + uri: http://www.surgeradio.co.uk/ +- namespace: http://www4.wiwiss.fu-berlin.de/bookmashup/ + prefix: rdf-book-mashup + title: RDF Book Mashup + uri: http://www4.wiwiss.fu-berlin.de/bizer/bookmashup/ +- namespace: http://citeseer.rkbexplorer.com/id/ + prefix: rkb-explorer-citeseer + title: CiteSeer (Research Index) (RKBExplorer) + uri: http://citeseer.rkbexplorer.com/ +- namespace: http://data.bnf.fr/ + prefix: data-bnf-fr + title: data.bnf.fr - BibliothĆØque nationale de France + uri: http://data.bnf.fr +- namespace: http://fr.dbpedia.org/resource/ + prefix: dbpedia-fr + title: DBpedia in French + uri: http://fr.dbpedia.org +- namespace: http://linked.opendata.cz/resource/sukl/active-ingredient/ + prefix: cz-sidc-drug-ingredients + title: Active ingredients of medicinal products available in Czech Republic + uri: http://linked.opendata.cz/resource/dataset/sukl/drug-ingredients +- namespace: http://smartlink.open.ac.uk/smartlink/resource/ + prefix: smartlink + title: 'SmartLink: Linked Services Non-Functional Properties' + uri: http://purl.org/smartlink +- namespace: http://purl.org/allie/ + prefix: allie-abbreviation-and-long-form-database-in-life-science + title: Allie Abbreviation And Long Form Database in Life Science + uri: http://allie.dbcls.jp/ +- namespace: http://digitaleconomy.rkbexplorer.com/id/ + prefix: rkb-explorer-digitaleconomy + title: digitaleconomy + uri: http://digitaleconomy.rkbexplorer.com +- namespace: http://gnoss.com/ + prefix: gnoss-com-a-social-and-semantic-platform + title: GNOSS.com, a Social and Semantic Platform + uri: http://gnoss.com/en/home +- namespace: http://w3id.org/foodie/open/pl/LPIS/ + prefix: LPIS (Poland) + title: Polish Land Parcel Information System (LPIS) dataset + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://keithalexander.co.uk/pbac + prefix: printed-book-auction-catalogues + title: English Language Books listed in Printed Book Auction Catalogues from 17th Century Holland + uri: http://keithalexander.co.uk/pbac +- namespace: http://www4.wiwiss.fu-berlin.de/diseasome/resource/ + prefix: fu-berlin-diseasome + title: Diseasome + uri: http://www4.wiwiss.fu-berlin.de/diseasome/ +- namespace: http://gnoss.com/comunidad/MPV-APADRINA + prefix: proyectoapadrina + title: Proyecto Apadrina, Marketing Punto de Venta + uri: http://gnoss.com/comunidad/MPV-APADRINA +- namespace: http://ec.europa.eu/eurostat/ + prefix: eurostat-rdf + title: Eurostat RDF datasets + uri: http://ec.europa.eu/eurostat/ramon/rdfdata/ +- namespace: http://theviewfrom.org/things/ + prefix: the-view-from + title: The View From + uri: http://theviewfrom.org/ +- namespace: https://linked.opendata.cz/zdroj/ovm/ + prefix: cz-souhrnne-typy-ovm + title: Summary types of Czech institutions of public power + uri: https://linked.opendata.cz/zdroj/datovĆ”-sada/souhrnnĆ©-typy-ovm +- namespace: http://purl.org/weso/nomenclator/ + prefix: nomenclator-asturias + title: Nomenclator Asturias + uri: http://www.josemalvarez.es/web/2011/11/01/nomenclator-asturias-2010/ +- namespace: http://unodc.publicdata.eu/r/ + prefix: unodc + title: UNODC - Statistics on criminal justice + uri: http://unodc.publicdata.eu/ +- namespace: http://resource.geolba.ac.at/ + prefix: geological-survey-of-austria-thesaurus + title: Geological Survey of Austria (GBA) - Thesaurus + uri: http://resource.geolba.ac.at/ +- namespace: http://dbtune.org/classical/resource/ + prefix: dbtune-classical + title: DBTune.org/classical + uri: http://dbtune.org/classical/ +- namespace: https://data.cultureelerfgoed.nl/term/id/cht/ + prefix: cht + title: Cultural Heritage Thesaurus + uri: https://data.cultureelerfgoed.nl/ +- namespace: http://ohsu.eagle-i.net/i/ + prefix: eagle-i-ohsu + title: eagle-i @ Oregon Health and Science University + uri: http://ohsu.eagle-i.net +- namespace: http://www.data.gov/semantic/data/ + prefix: data-gov + title: Data.gov + uri: http://data.gov/ +- namespace: http://jisc.rkbexplorer.com/id/ + prefix: rkb-explorer-jisc + title: UK JISC (RKBExplorer) + uri: http://jisc.rkbexplorer.com +- namespace: http://zitgist.com/music + prefix: zitgist-musicbrainz + title: MusicBrainz (zitgist.com) + uri: http://fgiasson.com/blog/index.php/2007/05/22/browsing-musicbrainzs-dataset-via-uri-dereferencing/ +- namespace: http://rhizomik.net/semanticxbrl/ + prefix: semantic-xbrl + title: Semantic XBRL Financial Data + uri: http://rhizomik.net/semanticxbrl/ +- namespace: http://es.dbpedia.org/resource/ + prefix: dbpedia-es + title: DBpedia in Spanish + uri: http://es.dbpedia.org +- namespace: http://linkedgeodata.org/ + prefix: linkedgeodata + title: LinkedGeoData + uri: http://linkedgeodata.org/ +- namespace: http://business.data.gov.uk/id/company/ + prefix: business-data-gov-uk + title: business.data.gov.uk + uri: http://business.data.gov.uk/ +- namespace: http://dbtune.org/myspace/ + prefix: dbtune-myspace + title: DBTune.org MySpace RDF Service + uri: http://dbtune.org/myspace/ +- namespace: http://psh.ntkcz.cz/ + prefix: psh-subject-headings + title: Polythematic Structured Subject Heading System + uri: http://psh.ntkcz.cz/skos/home/html/en +- namespace: http://bnb.bibliographica.org/ + prefix: jiscopenbib-bl_bnb-1 + title: JISC Open Bibliography British National Bibliography dataset + uri: http://openbiblio.net/2010/11/17/jisc-openbibliography-british-library-data-release/ +- namespace: http://dotac.rkbexplorer.com/id/ + prefix: rkb-explorer-dotac + title: dotAC (RKBExplorer) + uri: http://dotac.rkbexplorer.com +- namespace: http://www.openmobilenetwork.org/resource/ + prefix: openmobilenetwork + title: OpenMobileNetwork + uri: http://www.openmobilenetwork.org +- namespace: http://sociallink.futuro.media/ontology + prefix: SocialLink + title: SocialLink + uri: http://sociallink.futuro.media +- namespace: http://standardgraphs.ices.dk/stocks/ + prefix: Fishery Stock Dataset + title: Norway fishery stocks dataset + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://data.linkedevents.org/ + prefix: event-media + title: EventMedia + uri: http://eventmedia.eurecom.fr/ +- namespace: http://micka.lesprojekt.cz/catalog/dataset/ + prefix: EO metadata + title: Micka (EO metadata) + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://pisa.rkbexplorer.com/id/ + prefix: rkb-explorer-pisa + title: UniversitĆ  di Pisa (RKBExplorer) + uri: http://pisa.rkbexplorer.com +- namespace: http://data.odw.tw/record + prefix: ' data.odw.tw' + title: Open Data Web + uri: http://data.odw.tw/ +- namespace: http://nsf.rkbexplorer.com/id/ + prefix: rkb-explorer-nsf + title: National Science Foundation (RKBExplorer) + uri: http://nsf.rkbexplorer.com +- namespace: http://data.hnm.hu/id/colls/lib/bib/Instance/ + prefix: data-hnm-hu + title: data-hnm-hu - Hungarian National Museum Datasets + uri: http://hnm.hu +- namespace: http://www.cnr.it/ontology/cnr/individuo/ + prefix: data-cnr-it + title: Open Data from the Italian National Research Council + uri: http://data.cnr.it/site/ +- namespace: http://www.legislation.gov.uk/ + prefix: uk-legislation-api + title: UK Legislation + uri: http://www.legislation.gov.uk/ +- namespace: http://www.london-gazette.co.uk/ + prefix: london-gazette + title: The London Gazette - Gazettes Data + uri: http://www.london-gazette.co.uk/mashup/gazettesdata.htm +- namespace: http://data.szepmuveszeti.hu/id/collections/ + prefix: data-szepmuveszeti-hu + title: data-szepmuveszeti-hu + uri: http://www.szepmuveszeti.hu +- namespace: http://onto.fel.cvut.cz/ontologies/ufo/ + prefix: ufo + title: Unified Foundational Ontology + uri: http://onto.fel.cvut.cz/ontologies/ufo/current/index-en.html +- namespace: http://nuts.psi.enakting.org/id/ + prefix: linked-nuts + title: Linked NUTS + uri: http://nuts.psi.enakting.org/ +- namespace: http://dbtune.org/jamendo/ + prefix: jamendo-dbtune + title: DBTune.org Jamendo RDF Server + uri: http://dbtune.org/jamendo/ +- namespace: http://www4.wiwiss.fu-berlin.de/cordis/resource/ + prefix: fu-berlin-cordis + title: Community Research and Development Information Service (CORDIS) + uri: http://www4.wiwiss.fu-berlin.de/cordis/ +- namespace: http://vocabulary.semantic-web.at/OpenData/ + prefix: open-data-thesaurus + title: Open Data Thesaurus + uri: http://vocabulary.semantic-web.at/PoolParty/wiki/OpenData +- namespace: http://www.archivesdefrance.culture.gouv.fr/thesaurus/resource/ + prefix: thesaurus-w + title: Thesaurus W for Local Archives + uri: http://www.archivesdefrance.culture.gouv.fr/thesaurus/ +- namespace: http://zbw.eu/beta/p20/ + prefix: zbw-pressemappe20 + title: 20th Century Press Archives + uri: http://zbw.eu/beta/p20 +- namespace: ' http://linked.opendata.cz/resource/business-entity/' + prefix: cz-ares-or + title: Data about business entities from the ARES system - business registry of the Czech Republic + uri: http://linked.opendata.cz/resource/dataset/ares/or +- namespace: http://italy.rkbexplorer.com/id/ + prefix: rkb-explorer-italy + title: Diverse Italian ReSIST Partner Institutions (RKBExplorer) + uri: http://italy.rkbexplorer.com +- namespace: http://cau.eagle-i.net/i/ + prefix: eagle-i-cau + title: eagle-i @ Clark Atlanta University + uri: http://cau.eagle-i.net/ +- namespace: http://linked.opendata.cz/resource/domain/seznam.gov.cz/agendy/ + prefix: cz-ovm-agendas + title: Agendas of institutions of public power of the Czech Republic + uri: http://linked.opendata.cz/resource/dataset/seznam.gov.cz/agendy +- namespace: http://www.rdfabout.com/rdf/usgov/ + prefix: govtrack + title: GovTrack.us U.S Congress Legislative Data + uri: http://www.govtrack.us +- namespace: http://era.rkbexplorer.com/id/ + prefix: rkb-explorer-era + title: ERA - Australian Research Council publication ratings (RKBExplorer) + uri: http://era.rkbexplorer.com +- namespace: http://www4.wiwiss.fu-berlin.de/dailymed/resource/ + prefix: fu-berlin-dailymed + title: DailyMed + uri: http://www4.wiwiss.fu-berlin.de/dailymed/ +- namespace: http://newcastle.rkbexplorer.com/id/ + prefix: rkb-explorer-newcastle + title: University of Newcastle upon Tyne (RKBExplorer) + uri: http://newcastle.rkbexplorer.com +- namespace: http://lobid.org/resource/ + prefix: lobid-resources + title: lobid-Bibliographic Resources + uri: http://lobid.org/resource +- namespace: http://data.kasabi.com/dataset/bricklink/ + prefix: bricklink + title: Bricklink + uri: http://kasabi.com/dataset/bricklink +- namespace: http://purl.org/lu/uni/alma/swift + prefix: Swift + title: Swift Vocabulary + uri: http://purl.org/lu/uni/alma/swift +- namespace: http://transport.data.gov.uk/id/ + prefix: transport-data-gov-uk + title: transport.data.gov.uk + uri: http://transport.data.gov.uk/ +- namespace: http://umbel.org/umbel/ + prefix: umbel + title: UMBEL (Upper Mapping and Binding Exchange Layer) + uri: http://umbel.org +- namespace: http://www4.wiwiss.fu-berlin.de/medicare/resource/ + prefix: fu-berlin-medicare + title: MediCare + uri: http://www4.wiwiss.fu-berlin.de/medicare/ +- namespace: http://www.ntnu.no/ub/data/nvd/2003/ + prefix: nvd + title: Norsk inndeling av vitenskapsdisipliner + uri: http://www.ntnu.no/ub/data/nvd/about +- namespace: http://tsu.eagle-i.net/i/ + prefix: eagle-i-tsu + title: eagle-i @ Texas Southern University + uri: http://tsu.eagle-i.net +- namespace: http://ulm.rkbexplorer.com/id/ + prefix: rkb-explorer-ulm + title: UniversitƤt Ulm (RKBExplorer) + uri: http://ulm.rkbexplorer.com +- namespace: open data + prefix: The Respublic of Uzbekistan + title: Open data of Uzbekistan + uri: https://data.gov.uz/en +- namespace: http://organogram.data.gov.uk/data/thurrocktgdc + prefix: staff-organograms-and-pay-thurrock-thames-gateway-development-corporation + title: Organogram and staff pay data for Thurrock Thames Gateway Development Corporation + uri: http://data.gov.uk/dataset/staff-organograms-and-pay-thurrock-thames-gateway-development-corporation +- namespace: http://upr.eagle-i.net/i/ + prefix: eagle-i-upr + title: eagle-i@ University of Puerto Rico - Medical Sciences Campus + uri: http://upr.eagle-i.net +- namespace: http://telegraphis.net/ + prefix: telegraphis + title: Telegraphis Linked Data + uri: http://telegraphis.net/data/ +- namespace: http://linked.opendata.cz/resource/domain/coi.cz/check-action/ + prefix: cz-ctia-focus + title: Focus of the Czech Trade Inspection Authority's inspections + uri: http://linked.opendata.cz/resource/dataset/coi.cz/zamereni +- namespace: http://xula.eagle-i.net/i/ + prefix: eagle-i-xula + title: eagle-i @ Xavier University of Louisiana + uri: http://xula.eagle-i.net +- namespace: http://linked.opendata.cz/resource/domain/coi.cz/sanction/ + prefix: cz-ctia-sanctions + title: Sanctions of the Czech Trade Inspection Authority + uri: http://linked.opendata.cz/resource/dataset/coi.cz/sankce +- namespace: http://purl.org/weso/pscs/sitc/v4/resource + prefix: sitc-v4 + title: SITC-V4 + uri: http://www.josemalvarez.es/web/2011/11/16/product-scheme-classifications/ +- namespace: http://ruian.linked.opendata.cz/resource/ + prefix: cz-cuzk-legal-relationships-documents + title: Code lists of the legal relationships and documents + uri: http://ruian.linked.opendata.cz/resource/dataset/cuzk/pravni-vztahy-listiny +- namespace: http://rdf.freebase.com/ + prefix: freebase + title: Freebase + uri: http://freebase.com/ +- namespace: http://education.data.gov.uk/doc/institution + prefix: education-data-gov-uk + title: education.data.gov.uk + uri: http://education.data.gov.uk/ +- namespace: http://zbw.eu/stw/ + prefix: stw-thesaurus-for-economics + title: STW Thesaurus for Economics + uri: http://zbw.eu/stw +- namespace: http://pleiades.stoa.org/places/ http://pleiades.stoa.org/places/vocab# http://atlantides.org/capgrids/ + prefix: pleiades + title: Pleiades + uri: http://pleiades.stoa.org/ +- namespace: http://www.rdfabout.com/rdf/usgov/geo/ + prefix: 2000-us-census-rdf + title: 2000 U.S. Census in RDF (rdfabout.com) + uri: http://www.rdfabout.com/demo/census/ +- namespace: http://purl.uniprot.org/uniprot/ + prefix: uniprotkb + title: UniProtKB + uri: https://www.uniprot.org/uniprot/ +- namespace: http://kasabi.com/dataset/discogs + prefix: data-incubator-discogs + title: Discogs in RDF + uri: http://kasabi.com/dataset/discogs +- namespace: http://resourcelists.st-andrews.ac.uk/ + prefix: st-andrews-resource-lists + title: St. Andrews University Resource Lists + uri: http://resourcelists.st-andrews.ac.uk/ +- namespace: http://schemapedia.com/ + prefix: schemapedia + title: 'Schemapedia: RDF schema compendium' + uri: http://schemapedia.com/ +- namespace: http://purl.uniprot.org/ + prefix: uniprot + title: UniProt + uri: http://www.uniprot.org/ +- namespace: http://linked.opendata.cz/resource/domain/seznam.gov.cz/rejstriky/plneni/ + prefix: cz-fulfillments + title: Registry of contracts of the Czech Republic - Financial fulfillments + uri: http://linked.opendata.cz/resource/dataset/seznam.gov.cz/rejstriky/plneni +- namespace: http://id.loc.gov/ + prefix: lcsh + title: Library of Congress Subject Headings + uri: http://id.loc.gov/authorities/ +- namespace: http://data.odw.tw/record/ + prefix: data.odw.tw + title: Open Data Web + uri: http://data.odw.tw/ +- namespace: http://www.fao.org/countryprofiles/geoinfo/geopolitical/resource/ + prefix: fao-geopolitical-ontology + title: FAO geopolitical ontology + uri: http://www.fao.org/countryprofiles/geoinfo.asp?lang=en +- namespace: http://lisbon.rkbexplorer.com/id/ + prefix: rkb-explorer-lisbon + title: FundaĆ§Ć£o da Faculdade de Ciencas da Universidade de Lisboa (RKBExplorer) + uri: http://lisbon.rkbexplorer.com +- namespace: http://purl.org/weso/pscs/resource + prefix: pscs-catalogue + title: Product Scheme Classifications Catalogue + uri: http://www.josemalvarez.es/web/2011/11/16/product-scheme-classifications/ +- namespace: http://www.eea.europa.eu/publications + prefix: eea + title: European Environment Agency Published Products + uri: http://www.eea.europa.eu/ +- namespace: http://www.eionet.europa.eu/gemet/ + prefix: gemet + title: GEneral Multilingual Environmental Thesaurus + uri: http://www.eionet.europa.eu/gemet/ +- namespace: http://www.wikidata.org/entity/ + prefix: wikidata + title: Wikidata + uri: https://www.wikidata.org/ +- namespace: http://my-family-lineage.com/wiki/ + prefix: my-family-lineage + title: My Family Lineage + uri: http://my-family-lineage.com/wiki/Main_Page +- namespace: id.agrisemantics.org/gacs + prefix: GACS + title: Global Agricultural Concept Space + uri: https://agrisemantics.org/#GACShome/ +- namespace: http://taxref.mnhn.fr/lod/ + prefix: taxref-ld + title: 'TAXREF-LD: Linked Data French Taxonomic Register' + uri: https://inpn.mnhn.fr/programme/referentiel-taxonomique-taxref?lg=en +- namespace: http://whoiswho.publicdata.eu/data/ + prefix: eu-who-is-who + title: EU Who Is Who + uri: http://whoiswho.publicdata.eu/ +- namespace: http://www.sudoc.fr/ + prefix: sudocfr + title: Sudoc bibliographic data + uri: http://punktokomo.abes.fr/2011/07/04/le-sudoc-sur-le-web-de-donnees/ +- namespace: http://linked.opendata.cz/resource/domain/coi.cz/ban/ + prefix: cz-ctia-bans + title: Bans of the Czech Trade Inspection Authority + uri: http://linked.opendata.cz/resource/dataset/coi.cz/zakazy +- namespace: http://data.kasabi.com/dataset/yahoo-geoplanet + prefix: yahoo_geoplanet + title: Yahoo Geoplanet RDF + uri: http://kasabi.com/dataset/yahoo-geoplanet +- namespace: http://www.ntnu.no/ub/data/tekord + prefix: tekord + title: TEKORD + uri: http://www.ntnu.no/ub/data/tekord/about +- namespace: http://unlocode.rkbexplorer.com/id/ + prefix: rkb-explorer-unlocode + title: UN/LOCODE (RKBExplorer) + uri: http://unlocode.rkbexplorer.com +- namespace: http://purl.org/net7/vocab/locs/v1# + prefix: linked-open-camera + title: Linked Open Camera (LinkedOpenData.it) + uri: http://www.linkedopendata.it/datasets/loc +- namespace: http://population.psi.enakting.org/id/ + prefix: enakting-population + title: EnAKTing Population Dataset + uri: http://population.psi.enakting.org/ +- namespace: http://semanticscience.org/resource/ + prefix: bioportal-sio + title: SemanticScience Integrated Ontology + uri: http://bioportal.bioontology.org/ontologies/1532 +- namespace: http://ec.europa.eu/agriculture/FADN/ + prefix: FADN (2019) + title: Farm Accountancy Data Network (FADN) linked dataset from 2019 + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://dbtune.org/magnatune/artist/ + prefix: dbtune-magnatune + title: DBTune.org Magnatune RDF server + uri: http://dbtune.org/magnatune/ +- namespace: http://chroniclingamerica.loc.gov/ + prefix: chronicling-america + title: Chronicling America + uri: http://chroniclingamerica.loc.gov/about/api/ +- namespace: http://purl.org/vocabularies/princeton/wn30 + prefix: vu-wordnet + title: WordNet 3.0 (VU Amsterdam) + uri: http://semanticweb.cs.vu.nl/lod/wn30/ +- namespace: http://deusto.gnoss.com + prefix: deustotech + title: DeustoTech (Deusto Institute of Technology) + uri: http://deusto.gnoss.com +- namespace: http://purl.org/weso/pscs/cn/2012/resource + prefix: combined-nomenclature-2012 + title: CN 2012 + uri: http://www.josemalvarez.es/web/2011/11/16/product-scheme-classifications/ +- namespace: http://pt.dbpedia.org/resource/ + prefix: dbpedia-pt + title: DBpedia in Portuguese + uri: http://pt.dbpedia.org +- namespace: http://cordis.rkbexplorer.com/id/ + prefix: rkb-explorer-cordis + title: Community R&D Information Service (CORDIS) (RKBExplorer) + uri: http://cordis.rkbexplorer.com +- namespace: http://ns.inria.fr/covid19/ + prefix: Covid-on-the-Web + title: Covid-on-the-Web Dataset + uri: https://github.com/Wimmics/CovidOnTheWeb +- namespace: http://www.pokepedia.fr/ + prefix: pokepedia-fr + title: PokĆ©pĆ©dia + uri: http://www.pokepedia.fr +- namespace: http://santillana.linkeddata.es/elviajero/resource + prefix: santillana_guide_dataset + title: Santillana Guide Dataset + uri: http://webenemasuno.linkeddata.es/ +- namespace: http://linked.opendata.cz/resource/domain/vavai/ + prefix: cz-vavai-results + title: Results of R&D + uri: http://linked.opendata.cz/resource/dataset/vavai/results +- namespace: http://kaunas.rkbexplorer.com/id/ + prefix: rkb-explorer-kaunas + title: Vytautas Magnus University, Kaunas (RKBExplorer) + uri: http://kaunas.rkbexplorer.com +- namespace: http://linked.opendata.cz/resource/domain/vavai/ + prefix: cz-vavai-evaluation-2013 + title: Evaluation of VaVaI results for 2013 + uri: http://linked.opendata.cz/resource/dataset/vavai/evaluation/2013 +- namespace: http://lod.hebis.de/resource/ + prefix: hebis-bibliographic-resources + title: HeBIS - Bibliographic Resources of the Library Union Catalogues of Hessen and parts of the Rhineland Palatinate + uri: http://www.hebis.de +- namespace: http://harvard.eagle-i.net/i/ + prefix: eagle-i-harvard + title: eagle-i @ Harvard University + uri: http://harvard.eagle-i.net +- namespace: http://psm.eagle-i.net/i/ + prefix: eagle-i-psm + title: eagle-i @ Ponce School of Medicine + uri: http://psm.eagle-i.net/ +- namespace: http://packages.qa.debian.org/ + prefix: debian-package-tracking-system + title: Debian Package Tracking System + uri: http://packages.qa.debian.org/common/RDF.html +- namespace: http://ecs.rkbexplorer.com/id/ + prefix: rkb-explorer-ecs + title: School of Electronics and Computer Science, University of Southampton + uri: http://ecs.rkbexplorer.com +- namespace: http://www.idref.fr/ + prefix: idreffr + title: 'IdRef: Sudoc authority data' + uri: http://punktokomo.abes.fr/2011/07/05/idref-des-pages-html-et-rdf-plus-riches/ +- namespace: ttp://opendatacommunities.org/id/IMD/2010/IMD-rank/LSOA/ + prefix: english-index-of-multiple-deprivation-ranking-2010 + title: English Index of Multiple Deprivation Ranking 2010 + uri: http://opendatacommunities.org/data/imd-rank-2010 +- namespace: http://www4.wiwiss.fu-berlin.de/dblp/resource/ + prefix: fu-berlin-dblp + title: DBLP Bibliography Database in RDF (FU Berlin) + uri: http://www4.wiwiss.fu-berlin.de/dblp/ +- namespace: http://us.patents.aksw.org + prefix: linked-uspto-patent-data + title: USPTO Patent data + uri: http://aksw.org/Projects/USPatents.html +- namespace: http://data.kasabi.com/dataset/global-hunger-index + prefix: global-hunger-index-2011 + title: Global Hunger Index (2011) + uri: http://www.ifpri.org/publication/2011-global-hunger-index +- namespace: http://w3id.org/foodie/open/catchrecord/norway/ + prefix: Catch Record (2014- 2019) + title: Norway catch records dataset + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://w3id.org/foodie/open/cz/water_buffer25/ + prefix: Water Buffer + title: Water buffer dataset from Czech Republic + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://corporateexcellence.net/en/community/patronato + prefix: ce4r + title: CE4R Knowledge Centre Corporate Excellence ā€“ Centre for Reputation Leadership + uri: http://corporateexcellence.net/en/community/patronato +- namespace: http://elections.publicdata.eu/data/ + prefix: european-election-results + title: European Election Results + uri: http://elections.publicdata.eu +- namespace: 'http://msc2010.org/resources/MSC/2010/msc2010/ ' + prefix: msc + title: Mathematics Subject Classification + uri: http://msc2010.org/mscwork/ +- namespace: http://www.morelab.deusto.es/resource/ + prefix: morelab + title: MORElab + uri: http://www.morelab.deusto.es +- namespace: http://nomisma.org/ + prefix: nomisma_org + title: 'Nomisma.org ' + uri: http://nomisma.org +- namespace: http://linked.opendata.cz/resource/domain/seznam.gov.cz/rejstriky/smlouvy/ + prefix: cz-contracts + title: Registry of contracts of the Czech Republic - Contracts + uri: http://linked.opendata.cz/resource/dataset/seznam.gov.cz/rejstriky/smlouvy +- namespace: http://mortality.psi.enakting.org/id/ + prefix: enakting-mortality + title: EnAKTing Mortality Dataset + uri: http://mortality.psi.enakting.org/ +- namespace: http://reference.data.gov.uk/id/ + prefix: reference-data-gov-uk + title: reference.data.gov.uk + uri: http://reference.data.gov.uk/ +- namespace: http://data.europeana.eu + prefix: europeana-lod-v1 + title: Europeana Linked Open Data V1.0 + uri: http://data.europeana.eu/ +- namespace: http://dbtropes.org/resource/ + prefix: dbtropes + title: DBTropes + uri: http://dbtropes.org/ +- namespace: http://logd.tw.rpi.edu/source/congress-gov/dataset/biographical-directory-of-the-united-states-congress/version/2012-Jan-04/ + prefix: biographical-directory-of-the-united-states-congress + title: Biographical Directory of the United States Congress + uri: http://bioguide.congress.gov/biosearch/biosearch.asp +- namespace: http://data.ordnancesurvey.co.uk/doc/postcodeunit/ + prefix: ordnance-survey-linked-data + title: Ordnance Survey Linked Data + uri: http://data.ordnancesurvey.co.uk/ +- namespace: http://www.lotico.com/resource/ + prefix: lotico + title: Lotico + uri: http://www.lotico.com/ +- namespace: http://ineverycrea.net/ + prefix: ineverycrea + title: IneveryCREA, la comunidad de la creatividad educativa + uri: http://ineverycrea.net/ +- namespace: http://www4.wiwiss.fu-berlin.de/eures/resource/ + prefix: fu-berlin-eures + title: European Employment Services (EURES) + uri: http://www4.wiwiss.fu-berlin.de/eures/ +- namespace: http://wordnet.rkbexplorer.com/id/ + prefix: rkb-explorer-wordnet + title: WordNet (RKBExplorer) + uri: http://wordnet.rkbexplorer.com +- namespace: http://reegle.info + prefix: clean-energy-data-reegle + title: Linked Clean Energy Data (reegle.info) + uri: http://data.reegle.info/ +- namespace: http://fun.rkbexplorer.com/id/ + prefix: rkb-explorer-fun + title: fun + uri: http://fun.rkbexplorer.com +- namespace: http://kulturarvsdata.se/ + prefix: swedish-open-cultural-heritage + title: Swedish Open Cultural Heritage + uri: http://www.ksamsok.se/in-english/ +- namespace: Legija Stranaca + prefix: LEGIJA STRANACA + title: U ime Legije + uri: http://www.legion-etrangere.com +- namespace: https://linkeddata.cultureelerfgoed.nl/def/ceo + prefix: ceo + title: Linked Data Cultural Heritage Agency of the Netherlands + uri: https://linkeddata.cultureelerfgoed.nl/ +- namespace: http://ccny-cuny.eagle-i.net/i/ + prefix: eagle-i-ccny-cuny + title: eagle-i @ The City College of New York + uri: http://ccny-cuny.eagle-i.net +- namespace: ttp://rdfohloh.wikier.org/ + prefix: rdfohloh + title: RDFohloh + uri: http://rdfohloh.wikier.org +- namespace: http://darmstadt.rkbexplorer.com/id/ + prefix: rkb-explorer-darmstadt + title: Technische UniversitƤt Darmstadt (RKBExplorer) + uri: http://darmstadt.rkbexplorer.com +- namespace: http://prelex.publicdata.eu/r/ + prefix: prelex + title: PreLex + uri: http://prelex.publicdata.eu/ +- namespace: http://libris.kb.se/bib/ + prefix: libris + title: LIBRIS + uri: http://libris.kb.se +- namespace: http://www.yso.fi/onto/ysa/ + prefix: ysa + title: YSA - General Finnish Thesaurus + uri: http://finto.fi/ysa/ +- namespace: http://logd.tw.rpi.edu/source/contactingthecongress/dataset/directory-for-the-112th-congress/ + prefix: congresspeople + title: 2011 US Congress People + uri: http://www.contactingthecongress.org/ +- namespace: http://dbtune.org/last-fm/ + prefix: dbtune-audioscrobbler + title: DBTune.org AudioScrobbler RDF Service + uri: http://dbtune.org/last-fm/ +- namespace: http://data.nku.cz/resource/ + prefix: cz-sao-check-actions + title: Inspections of the Supreme Audit Office of the Czech Republic + uri: http://data.nku.cz/resource/dataset/check-actions +- namespace: http://roma.rkbexplorer.com/id/ + prefix: rkb-explorer-roma + title: UniversitĆ  degli studi di Roma "La Sapienza" (RKBExplorer) + uri: http://roma.rkbexplorer.com +- namespace: http://lobid.org/organisation/ + prefix: lobid-organisations + title: lobid-organisations + uri: http://lobid.org/organisation +- namespace: http://hawaii.eagle-i.net/i/ + prefix: eagle-i-hawaii + title: eagle-i @ University of Hawaiā€™i at Mānoa + uri: http://hawaii.eagle-i.net +- namespace: http://linked.opendata.cz/resource/domain/seznam.gov.cz/rejstriky/objednavky/ + prefix: cz-orders + title: Registry of contracts of the Czech Republic - Orders + uri: http://linked.opendata.cz/resource/dataset/seznam.gov.cz/rejstriky/objednavky +- namespace: http://opendatacommunities.org/id/geography/lsoa/ + prefix: odc-lsoa + title: Open Data Communities - Lower layer Super Output Areas + uri: http://opendatacommunities.org/datasets/geography +- namespace: http://geo.linkeddata.es/resource/ + prefix: geolinkeddata + title: GeoLinkedData + uri: http://geo.linkeddata.es/ +- namespace: http://linked.opendata.cz/resource/es/msssi + prefix: it-aifa-drug-prices + title: List of prices of medicinal products marketed in Italian Republic + uri: http://linked.opendata.cz/resource/dataset/it/aifa/drug-prices +- namespace: http://linked.opendata.cz/resource/domain/vavai/ + prefix: cz-vavai-funding-providers + title: State funding providers + uri: http://linked.opendata.cz/resource/dataset/vavai/funding-providers +- namespace: http://researchgroups.gnoss.com + prefix: dblp-deusto-gnoss + title: DBLP Research Groups (University of Deusto-GNOSS) + uri: http://researchgroups.gnoss.com +- namespace: http://aemet.linkeddata.es/resource/ + prefix: aemet + title: AEMET metereological dataset + uri: http://aemet.linkeddata.es/ +- namespace: http://d-nb.info/gnd/ + prefix: dnb-gemeinsame-normdatei + title: Gemeinsame Normdatei (GND) + uri: http://www.dnb.de/EN/lds +- namespace: http://dblp.rkbexplorer.com/id/ + prefix: rkb-explorer-dblp + title: DBLP Computer Science Bibliography (RKBExplorer) + uri: http://dblp.rkbexplorer.com +- namespace: http://data.kasabi.com/dataset/nasa + prefix: data-incubator-nasa + title: NASA Space Flight & Astronaut data in RDF + uri: http://kasabi.com/dataset/nasa +- namespace: http://cdrewu.eagle-i.net/i/ + prefix: eagle-i-cdrewu + title: eagle-i @ Charles R. Drew University + uri: http://cdrewu.eagle-i.net +- namespace: cv.iptc.org + prefix: iptc-newscodes + title: IPTC NewsCodes + uri: http://newscodes.org +- namespace: http://oai.rkbexplorer.com/id/ + prefix: rkb-explorer-oai + title: Open Archive Initiative Harvest over OAI-PMH (RKBExplorer) + uri: http://oai.rkbexplorer.com +- namespace: http://eunis.eea.europa.eu/ + prefix: eunis + title: European Nature Information System + uri: http://eunis.eea.europa.eu +- namespace: http://deepblue.rkbexplorer.com/id/ + prefix: rkb-explorer-deepblue + title: Deep Blue (RKBExplorer) + uri: http://deepblue.rkbexplorer.com +- namespace: http://wiki.rkbexplorer.com/id/ + prefix: rkb-explorer-wiki + title: ReSIST Project Wiki (RKBExplorer) + uri: http://wiki.rkbexplorer.com +- namespace: http://ibl.mdanderson.org/TCGA/ + prefix: tcga + title: The Cancer Genome Atlas + uri: http://tcga.s3db.org/ +- namespace: http://dbkwik.webdatacommons.org + prefix: dbkwik + title: DBkWik + uri: http://dbkwik.webdatacommons.org +- namespace: http://southampton.rkbexplorer.com/id/ + prefix: rkb-explorer-southampton + title: School of Electronics and Computer Science, University of Southampton (RKBExplorer) + uri: http://southampton.rkbexplorer.com +- namespace: http://aliada.scanbit.net:8891/id/collections/ + prefix: aliada-scanbit-net + title: aliada-scanbit-net + uri: http://biblioteca.artium.org +- namespace: http://webscience.rkbexplorer.com/id/ + prefix: rkb-explorer-webscience + title: Web Science Conference (RKBExplorer) + uri: http://webscience.rkbexplorer.com +- namespace: http://data.theeuropeanlibrary.org/BibliographicResource/ + prefix: the-european-library-open-dataset + title: The European Library Open Dataset + uri: https://lod-cloud.net/edit-dataset/the-european-library-open-dataset +- namespace: http://data.cervantesvirtual.com/ + prefix: BVMC + title: Biblioteca Virtual Miguel de Cervantes + uri: http://data.cervantesvirtual.com +- namespace: 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http://vocab.nerc.ac.uk/ + prefix: nvs + title: NERC Vocabulary Server 2.0 + uri: http://vocab.nerc.ac.uk/ +- namespace: http://dbtune.org/musicbrainz/ + prefix: dbtune-musicbrainz + title: DBTune.org Musicbrainz D2R Server + uri: http://dbtune.org/musicbrainz/ +- namespace: http://w3id.org/foodie/otm/ + prefix: OTM + title: Open Transport Map + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://didactalia.net + prefix: didactalia + title: Didactalia, Ć­ndice de recursos educativos para profesores, padres y alumnos (GNOSS) + uri: http://didactalia.net +- namespace: http://purl.org/tcga/core# + prefix: tcga-roadmap + title: TCGA Roadmap + uri: http://tcga.github.com/Roadmap/ +- namespace: http://vivo.cornell.edu/ + prefix: vivo-cornell-university + title: VIVO Cornell + uri: http://vivo.cornell.edu/ +- namespace: http://data.linkedopendata.it/data/musei/resource/ + prefix: museums-in-italy + title: Italian Museums + uri: http://www.linkedopendata.it/datasets/musei +- namespace: http://lod.ac/bdls/ + prefix: lodac-bdls + title: LODAC BDLS + uri: http://lod.ac/wiki/LODAC_BDLS +- namespace: http://www4.wiwiss.fu-berlin.de/stitch/resource/ + prefix: fu-berlin-stitch + title: 'STITCH: Chemical-Protein Interactions' + uri: http://www4.wiwiss.fu-berlin.de/stitch/ +- namespace: http://www.calames.abes.fr/pub/ms/ + prefix: calames + title: Calames + uri: http://www.calames.abes.fr/ +- namespace: http://alaska.eagle-i.net/i/ + prefix: eagle-i-alaska + title: eagle-i @ University of Alaska Fairbanks + uri: http://alaska.eagle-i.net +- namespace: http://www.bbc.co.uk/music/artist/ + prefix: bbc-music + title: BBC Music + uri: http://www.bbc.co.uk/music +- namespace: http://lod.geospecies.org/ + prefix: geospecies + title: GeoSpecies Knowledge Base + uri: http://lod.geospecies.org/ +- namespace: http://www.bbc.co.uk/programmes + prefix: bbc-programmes + title: BBC Programmes + uri: http://www.bbc.co.uk/programmes +- namespace: http://id.esd.org.uk/ + prefix: esd-standards + title: 'ESD Standards: Controlled lists for the UK public sector' + uri: http://standards.esd.org.uk/ +- namespace: http://rdfdata.eionet.europa.eu/ + prefix: eionet-rdf + title: EIONET RDF Data + uri: http://rdfdata.eionet.europa.eu/ +- namespace: http://onto.beef.org.pl/domain/ + prefix: ontobeef-domain + title: OntoBeef Domain + uri: http://onto.beef.org.pl/ontobeef +- namespace: http://km.aifb.kit.edu/projects/numbers/web/ + prefix: linked-open-numbers + title: Linked Open Numbers + uri: http://km.aifb.kit.edu/projects/numbers/ +- namespace: http://prefix.cc/ + prefix: prefix-cc + title: prefix.cc + uri: http://prefix.cc/ +- namespace: http://purl.org/NET/lccn/ + prefix: linkedlccn + title: LinkedLCCN + uri: http://purl.org/NET/lccn/ +- namespace: http://data.archiveshub.ac.uk/ + prefix: archiveshub-linkeddata + title: Archives Hub Linked Data + uri: http://data.archiveshub.ac.uk +- namespace: http://w3id.org/foodie/olu/ + prefix: 'OLU ' + title: Open Land Use + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://aims.fao.org/aos/agrovoc/ + prefix: agrovoc + title: AGROVOC + uri: http://aims.fao.org/vest-registry/vocabularies/agrovoc +- namespace: http://data.kasabi.com/dataset/foodista + prefix: foodista + title: Foodista + uri: http://kasabi.com/dataset/foodista +- namespace: http://www.rubensworks.net/ + prefix: rubentaelman + title: Ruben Taelman's Data + uri: https://github.com/rubensworks/rubensworks.net +- namespace: ei2a + prefix: ei2a + title: Aragon Interoperable Information Structure EI2A - aragon open data + uri: https://opendata.aragon.es +- namespace: http://rdf.corpora.uni-leipzig.de/resources/xho/inventory/ + prefix: open-bantu-isixhosa-lexicon + title: Open Bantu isiXhosa Lexicon + uri: https://github.com/MMoOn-Project/OpenBantu/tree/master/xho +- namespace: http://crime.psi.enakting.org/id/ + prefix: enakting-crime + title: EnAKTing Crime Dataset + uri: http://crime.psi.enakting.org/ +- namespace: http://agencies.publicdata.eu/r/ + prefix: eu-agencies-bodies + title: EU Agencies and decentralized bodies (Agencies) + uri: http://agencies.publicdata.eu/ +- namespace: http://linkeddata.few.vu.nl/rechtspraak/ + prefix: rechtspraak + title: Rechtspraak.nl + uri: http://www.best-project.nl +- namespace: http://spatial.ucd.ie/lod/osn + prefix: osm-semantic-network + title: OSM Semantic Network + uri: http://wiki.openstreetmap.org/wiki/OSM_Semantic_Network +- namespace: http://gnoss.com/comunidad/Arthroscopy + prefix: arthroscopy + title: Arthroscopy community + uri: http://gnoss.com/comunidad/Arthroscopy +- namespace: http://purl.org/net/tcm/ + prefix: tcmgenedit_dataset + title: TCMGeneDIT Dataset + uri: http://code.google.com/p/junsbriefcase/wiki/TGDdataset +- namespace: http://www.zaragoza.es/datosabiertos/id/ + prefix: zaragoza-datosabiertos + title: Datos Abiertos de Zaragoza + uri: http://www.zaragoza.es/ciudad/risp/presentacion.htm +- namespace: http://edgarwrap.ontologycentral.com/ + prefix: linked-edgar + title: Linked EDGAR (OntologyCentral) + uri: http://edgarwrap.ontologycentral.com/ +- namespace: https://linked.opendata.cz/zdroj/ekonomickĆ½-subjekt/ + prefix: cz-ic + title: Czech Business Entity identification numbers and names + uri: https://linked.opendata.cz/zdroj/datovĆ”-sada/seznam-ič +- namespace: http://eurecom.rkbexplorer.com/id/ + prefix: rkb-explorer-eurecom + title: Institut EurĆ©com (RKBExplorer) + uri: http://eurecom.rkbexplorer.com +- namespace: http://data.kasabi.com/dataset/ecco-tcp-eighteenth-century-collections-online-texts/ + prefix: ecco-tcp-linked-data + title: ECCO-TCP Eighteenth Century Texts Linked Data + uri: http://kasabi.com/dataset/ecco-tcp-eighteenth-century-collections-online-texts +- namespace: http://publications.europa.eu/resource/authority/language + prefix: language-authority-list + title: ' Language Name Authority List ' + uri: https://op.europa.eu/en/web/eu-vocabularies/at-dataset/-/resource/dataset/language +- namespace: https://linked.opendata.cz/zdroje + prefix: cz-nace + title: Czech statistical classification of economic activities in the European Community (CZ-NACE) + uri: https://linked.opendata.cz/zdroje/datovĆ©-sady/čsĆŗ/čƭselnĆ­ky/cz-nace +- namespace: http://miguiadeviajes.net + prefix: miguiadeviajes-gnoss + title: Mi GuĆ­a de Viajes, colecciĆ³n de guĆ­as de viaje para viajeros (GNOSS) + uri: http://miguiadeviajes.net +- namespace: http://jsu.eagle-i.net/i/ + prefix: eagle-i-jsu + title: eagle-i @ Jackson State University + uri: http://jsu.eagle-i.net +- namespace: http://pgxlod.loria.fr/resource/ + prefix: PGxLOD + title: PGxLOD + uri: https://pgxlod.loria.fr/ +- namespace: http://eprints.ecs.soton.ac.uk/id/eprint/ + prefix: southampton-ecs-eprints + title: ECS Southampton EPrints + uri: http://eprints.ecs.soton.ac.uk/ +- namespace: http://data.kasabi.com/dataset/prelinger-archives + prefix: prelinger_archives + title: Prelinger Archives + uri: http://kasabi.com/dataset/prelinger-archives +- namespace: http://energy.psi.enakting.org/def/ + prefix: enakting-energy + title: EnAKTing Energy Dataset + uri: http://energy.psi.enakting.org/ +- namespace: http://vivo.cornell.edu/individual/ + prefix: vivo + title: VIVO + uri: http://vivoweb.org/ +- namespace: http://en.openei.org/ + prefix: open-energy-info-wiki + title: OpenEI - Open Energy Info + uri: http://en.openei.org/ +- namespace: http://kisti.rkbexplorer.com/id/ + prefix: rkb-explorer-kisti + title: Korean Institute of Science Technology and Information (RKBExplorer) + uri: http://kisti.rkbexplorer.com +- namespace: http://fintrans.publicdata.eu/ec/resource/ + prefix: beneficiaries-of-the-european-commission + title: 'EU: fintrans.publicdata.eu' + uri: http://fintrans.publicdata.eu/ +- namespace: http://bnb.data.bl.uk/id/ + prefix: bluk-bnb + title: British National Bibliography (BNB) - Linked Open Data + uri: http://bnb.data.bl.uk +- namespace: http://id.worldcat.org/fast/ + prefix: oclc-fast + title: Faceted Application of Subject Terminology + uri: http://id.worldcat.org/fast/ +- namespace: http://www.sdi4apps.eu/poi.rdf + prefix: Smart POI dataset + title: Smart Point Of Interest + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://lod.b3kat.de/title/ + prefix: b3kat + title: B3Kat - Library Union Catalogues of Bavaria, Berlin and Brandenburg + uri: http://lod.b3kat.de +- namespace: https://w3id.org/associations/ + prefix: associations + title: associations + uri: https://w3id.org/associations +- namespace: http://www.w3.org/2006/03/wn/wn20/ + prefix: w3c-wordnet + title: WordNet 2.0 (W3C) + uri: http://www.w3.org/TR/wordnet-rdf +- namespace: http://hunter-cuny.eagle-i.net/i/ + prefix: eagle-i-hunter-cuny + title: eagle-i @ Hunter College + uri: http://hunter-cuny.eagle-i.net +- namespace: http://risks.rkbexplorer.com/id/ + prefix: rkb-explorer-risks + title: RISKS Digest (RKBExplorer) + uri: http://risks.rkbexplorer.com +- namespace: http://ecb.publicdata.eu/ + prefix: ecb-statistics-linked-data + title: European Central Bank Statistics (PublicData.eu) + uri: http://ecb.publicdata.eu +- namespace: http://mapasinteractivos.didactalia.net/comunidad/mapasflashinteractivos + prefix: interactivemaps-gnoss + title: Interactive Maps, a collection of interactive flash maps (GNOSS) + uri: http://mapasinteractivos.didactalia.net/comunidad/mapasflashinteractivos +- namespace: http://www.bbc.co.uk/nature/ + prefix: bbc-wildlife-finder + title: BBC Wildlife Finder + uri: http://www.bbc.co.uk/wildlifefinder/ +- namespace: http://purl.org/weso/pscs/cpa/2008/resource + prefix: cpc-2008 + title: CPC 2008 + uri: http://www.josemalvarez.es/web/2011/11/16/product-scheme-classifications/ +- namespace: http://linked.opendata.cz/resource/domain/vavai/ + prefix: cz-vavai-organizations + title: Organizations active in R&D + uri: http://linked.opendata.cz/resource/dataset/vavai/organizations +- namespace: http://purl.org/NET/marccodes/ + prefix: marc-codes + title: MARC Codes List + uri: http://purl.org/NET/marccodes/ +- namespace: http://data.linkedmdb.org/resource/ + prefix: linkedmdb + title: Linked Movie DataBase + uri: http://linkedmdb.org/ +- namespace: http://www.t4gm.info/ + prefix: t4gm-info + title: Thesaurus for Graphic Materials (t4gm.info) + uri: http://www.t4gm.info/ +- namespace: http://nektar.oszk.hu/ + prefix: hungarian-national-library-catalog + title: Hungarian National Library (NSZL) catalog + uri: http://nektar.oszk.hu/wiki/Semantic_web +- namespace: http://famu.eagle-i.net/i/ + prefix: eagle-i-famu + title: eagle-i @ Florida Agricultural and Mechanical University + uri: http://famu.eagle-i.net +- namespace: http://w3id.org/foodie/corine/ + prefix: Corine linked dataset + title: Corine linked dataset + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://ieee.rkbexplorer.com/id/ + prefix: rkb-explorer-ieee + title: IEEE Papers (RKBExplorer) + uri: http://ieee.rkbexplorer.com +- namespace: http://acm.rkbexplorer.com/id/ + prefix: rkb-explorer-acm + title: Association for Computing Machinery (ACM) (RKBExplorer) + uri: http://acm.rkbexplorer.com/ +- namespace: http://red.gnoss.com/comunidad/OpenData + prefix: open-data-risp + title: Open Data RISP, the Spanish Open Data community + uri: http://red.gnoss.com/comunidad/OpenData +- namespace: http://dbpedia.org/resource/ + prefix: dbpedia + title: DBpedia + uri: http://dbpedia.org/ +- namespace: http://standardgraphs.ices.dk/stocks/ + prefix: 'Norway Fishery ' + title: Norway fishery stocks dataset + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://eurobarometer.publicdata.eu/data/ + prefix: eurobarometer-standard + title: Standard Eurobarometer + uri: http://eurobarometer.publicdata.eu +- namespace: http://webconf.rkbexplorer.com/id/ + prefix: rkb-explorer-webconf + title: webconf + uri: http://webconf.rkbexplorer.com +- namespace: http://laas.rkbexplorer.com/id/ + prefix: rkb-explorer-laas + title: LAAS-CNRS (RKBExplorer) + uri: http://laas.rkbexplorer.com +- namespace: http://gnoss.com/comunidad/prospectivatecnologica + prefix: prospects-and-trends-gnoss + title: Prospects and Trends (GNOSS) + uri: http://gnoss.com/comunidad/prospectivatecnologica +- namespace: http://purl.org/weso/pscs/isic/v4/resource + prefix: isic-v4 + title: ISIC V4 + uri: http://www.josemalvarez.es/web/2011/11/16/product-scheme-classifications/ +- namespace: http://linked.opendata.cz/resource/domain/vavai/ + prefix: cz-vavai-programmes + title: R&D Programmes + uri: http://linked.opendata.cz/resource/dataset/vavai/programmes +- namespace: http://data.kasabi.com/dataset/renewable-energy-generators + prefix: renewable_energy_generators + title: Renewable Energy Generators + uri: http://kasabi.com/dataset/renewable-energy-generators +- namespace: http://purl.org/weso/pscs/cpv/2003/resource + prefix: cpv-2003 + title: CPV 2003 + uri: http://www.josemalvarez.es/web/2011/11/16/product-scheme-classifications/ +- namespace: http://el.dbpedia.org/resource/ + prefix: dbpedia-el + title: DBpedia in Greek + uri: http://wiki.el.dbpedia.org +- namespace: http://linked.opendata.cz/resource/domain/vavai/ + prefix: cz-vavai-tenders + title: Tenders in R&D + uri: http://linked.opendata.cz/resource/dataset/vavai/tenders +- namespace: http://data.linkedopendata.it/grrt/resource/ + prefix: grrt + title: Accommodations in Tuscany (LinkedOpenData.it) + uri: http://www.linkedopendata.it/datasets/grrt +- namespace: http://datos.bne.es/resource/ + prefix: datos-bne-es + title: datos.bne.es + uri: http://datos.bne.es +- namespace: http://estatwrap.ontologycentral.com/id/ + prefix: linked-eurostat + title: Linked Eurostat (OntologyCentral) + uri: http://ontologycentral.com/2009/01/eurostat/ +- namespace: http://eupmedia.publicdata.eu/data/ + prefix: eu-parliament-media + title: EU Parliament Media Library + uri: http://eupmedia.publicdata.eu/ +- namespace: http://nhs.psi.enakting.org/id/nhs/ + prefix: enakting-nhs + title: EnAKTing NHS Dataset + uri: http://nhs.psi.enakting.org/ +- namespace: http://linked.opendata.cz/resource/domain/vavai/ + prefix: cz-vavai-research-plans + title: Institutional research plans + uri: http://linked.opendata.cz/resource/dataset/vavai/research-plans +- namespace: http://courseware.rkbexplorer.com/id/ + prefix: rkb-explorer-courseware + title: Resilient Computing Courseware (RKBExplorer) + uri: http://courseware.rkbexplorer.com +- namespace: http://webenemasuno.linkeddata.es/elviajero/resource/ + prefix: elviajero + title: El Viajero's tourism dataset + uri: http://webenemasuno.linkeddata.es/ +- namespace: http://scholarometer.indiana.edu/namespaces/ + prefix: scholarometer + title: Scholarometer + uri: http://scholarometer.indiana.edu/data.html +- namespace: http://www.fao.org/aims/aos/fi/water_FAO_areas/ + prefix: Water Areas Classification + title: FAO water areas classification as linked data + uri: https://www.foodie-cloud.org/fct/ +- namespace: http://www.dbacademic.tech/resource + prefix: dbacademic + title: dbacademic + uri: http://sparql.dbacademic.tech/ +- namespace: http://www.readinglists.manchester.ac.uk/ + prefix: manchester-university-reading-lists + title: Manchester University Reading Lists + uri: http://www.readinglists.manchester.ac.uk/ +- namespace: http://gnoss.com/comunidad/Interactivos + prefix: artenuevosmedios-gnoss + title: Entornos interactivos. Arte en los nuevos medios (GNOSS) + uri: http://gnoss.com/comunidad/Interactivos +- namespace: http://caligraph.org + prefix: CaLiGraph + title: CaLiGraph + uri: http://caligraph.org +- namespace: http://logd.tw.rpi.edu/ + prefix: twc-logd + title: 'TWC: Linking Open Government Data' + uri: http://logd.tw.rpi.edu +- namespace: http://www.johngoodwin.me.uk/family/ + prefix: john-goodwins-family-tree + title: John Goodwin's Family Tree + uri: http://www.johngoodwin.me.uk/family/ +- namespace: http://openlibrary.org/ + prefix: open-library + title: Open Library + uri: http://openlibrary.org/ +- namespace: http://datos.artium.org/id/collections/ + prefix: datos-artium-org + title: datos-artium-org + uri: http://biblioteca.artium.org +- namespace: http://eurovoc.europa.eu + prefix: eurovoc + title: EuroVoc + uri: https://op.europa.eu/en/web/eu-vocabularies/th-dataset/-/resource/dataset/eurovoc +- namespace: http://linked.opendata.cz/resource/atc/ + prefix: cz-eh-1-atc + title: ATC groups + uri: http://linked.opendata.cz/resource/dataset/atc +- namespace: http://data.kasabi.com/dataset/chempedia-rdf/ + prefix: chempedia-rdf + title: ChemPedia RDF + uri: http://figshare.com/articles/ChemPedia_as_RDF/681678 +- namespace: http://co2emission.psi.enakting.org/id/ + prefix: enakting-co2emission + title: EnAKTing CO2 Emission Dataset + uri: http://co2emission.psi.enakting.org/ +- namespace: http://www4.wiwiss.fu-berlin.de/flickrwrappr/photos/ + prefix: flickr-wrappr + title: flickr? wrappr + uri: http://www4.wiwiss.fu-berlin.de/flickrwrappr +- namespace: http://deploy.rkbexplorer.com/id/ + prefix: rkb-explorer-deploy + title: DEPLOY (RKBExplorer) + uri: http://deploy.rkbexplorer.com +- namespace: http://purl.org/weso/pscs/naics/2012/resource + prefix: naics-2012 + title: NAICS 2012 + uri: http://www.josemalvarez.es/web/2011/11/16/product-scheme-classifications/ +- namespace: http://epsrc.rkbexplorer.com/id/ + prefix: rkb-explorer-epsrc + title: epsrc + uri: http://epsrc.rkbexplorer.com +- namespace: http://vocabulary.semantic-web.at/semweb/ + prefix: socialsemweb-thesaurus + title: Social Semantic Web Thesaurus + uri: http://vocabulary.semantic-web.at/PoolParty/wiki/semweb +- namespace: http://www4.wiwiss.fu-berlin.de/sider/resource/ + prefix: fu-berlin-sider + title: 'SIDER: Side Effect Resource' + uri: http://www4.wiwiss.fu-berlin.de/sider/ +- namespace: http://opendatacommunities.org/id/IMD/2010/IMD-score/LSOA/ + prefix: english-index-of-multiple-deprivation-score-2010 + title: English Index of Multiple Deprivation Score 2010 + uri: http://opendatacommunities.org/datasets/imd-score-2010 +- namespace: http://linked.opendata.cz/resource/domain/cenia.cz/ + prefix: cz-cenia-pollution + title: Integrated pollution registry + uri: http://linked.opendata.cz/resource/dataset/cenia.cz/irz +- namespace: http://iserve.kmi.open.ac.uk/iserve/ + prefix: iserve + title: 'iServe: Linked Services Registry' + uri: http://iserve.kmi.open.ac.uk/ +- namespace: http://www4.wiwiss.fu-berlin.de/euraxess/resource/ + prefix: fu-berlin-euraxess + title: EURAXESS - Researchers in Motion + uri: http://www4.wiwiss.fu-berlin.de/euraxess/ +- namespace: http://tuskegee.eagle-i.net/i/ + prefix: eagle-i-tuskegee + title: eagle-i @ Tuskegee University + uri: http://tuskegee.eagle-i.net +- namespace: http://eudbpedia.deusto.es/resource/ + prefix: dbpedia-eu + title: DBpedia in Basque + uri: http://eudbpedia.deusto.es +- namespace: https://w3id.org/foodie/open/cz/pLPIS_180616_WGS/ + prefix: LPIS Czech Republic + title: Land parcel dataset (LPIS) from Czech Republic + uri: https://www.foodie-cloud.org/fct/ diff --git a/fuji_server/data/longterm_formats.json b/fuji_server/data/longterm_formats.json deleted file mode 100644 index 405565c1..00000000 --- a/fuji_server/data/longterm_formats.json +++ /dev/null @@ -1,119 +0,0 @@ -{ - "application/jpg": null, - "application/mp4": null, - "application/mpeg4-generic": null, - "application/mpeg4-iod": null, - 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http://www.dcc.ac.uk/resources/metadata-standards/abcd-access-biological-collection-data + - type: homepage + value: http://wiki.tdwg.org/ABCD + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_3.0.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/3.0 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.1.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.1 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.06.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.06 + subject_areas: + - Biological diversity + - Botany + - Earth sciences + - Genetics + - Geology + - Palaeontology + - Zoology + title: ABCD (Access to Biological Collection Data) + urls: + - msc:m1 + - https://doi.org/10.25504/FAIRsharing.kr3215 + - http://www.dcc.ac.uk/resources/metadata-standards/abcd-access-biological-collection-data + - http://www.tdwg.org/standards/115/ + - http://wiki.tdwg.org/ABCD + - https://abcd.tdwg.org/xml/ABCD_3.0.xsd + - http://www.tdwg.org/schemas/abcd/3.0 + - https://abcd.tdwg.org/xml/ABCD_2.1.xsd + - http://www.tdwg.org/schemas/abcd/2.1 + - https://abcd.tdwg.org/xml/ABCD_2.06.xsd + - http://www.tdwg.org/schemas/abcd/2.06 + - msc:g11 + - msc:g44 + - msc:g45 +abcddna: + acronym: ABCDDNA + field_of_science: + - genetics + - natural sciences + identifier: + - type: local + value: msc:m42 + - type: local + value: https://doi.org/10.25504/FAIRsharing.7tx4ac + - type: homepage + value: http://www.tdwg.org/standards/640/ + - type: schema + value: http://www.dnabank-network.org/schemas/ABCDDNA/ABCDDNA.xsd + - type: namespace + value: http://www.dnabank-network.org/schemas/ABCDDNA + subject_areas: + - Genetics + title: ABCDDNA + urls: + - msc:m42 + - https://doi.org/10.25504/FAIRsharing.7tx4ac + - http://www.tdwg.org/standards/640/ + - http://www.dnabank-network.org/schemas/ABCDDNA/ABCDDNA.xsd + - http://www.dnabank-network.org/schemas/ABCDDNA + - msc:m1 +abcdefg-access-biological-collection-databases-extended-geosciences: + acronym: ABCDEFG + field_of_science: + - mineralogy + - palaeontology + - earth and related environmental sciences + - natural sciences + identifier: + - type: local + value: msc:m43 + - type: local + value: https://fairsharing.org/1396 + - type: homepage + value: http://www.geocase.eu/efg + - type: schema + value: http://www.geocase.eu/sites/geocase.biodiv.naturkundemuseum-berlin.de/documentation/abcdefg.xsd + - type: namespace + value: http://www.synthesys.info/ABCDEFG/1.0 + subject_areas: + - Earth sciences + - Mineralogy + - Palaeontology + title: ABCDEFG (Access to Biological Collection Databases Extended for Geosciences) + urls: + - msc:m43 + - https://fairsharing.org/1396 + - http://www.geocase.eu/efg + - http://www.geocase.eu/sites/geocase.biodiv.naturkundemuseum-berlin.de/documentation/abcdefg.xsd + - http://www.synthesys.info/ABCDEFG/1.0 + - msc:m1 +agls-metadata-profile: + acronym: AGLS + field_of_science: + - sciences + identifier: + - type: local + value: msc:m44 + - type: local + value: https://fairsharing.org/751 + - type: homepage + value: http://www.agls.gov.au + - type: namespace + value: http://www.agls.gov.au/agls/terms/ + subject_areas: + - Multidisciplinary + title: AGLS Metadata Profile + urls: + - msc:m44 + - https://fairsharing.org/751 + - http://www.agls.gov.au + - http://www.agls.gov.au/agls/terms/ + - msc:m15 +agmes-agricultural-metadata-element-set: + acronym: AgMES + field_of_science: + - animal and dairy science + - agricultural sciences + - agriculture + - fisheries + identifier: + - type: local + value: msc:m2 + - type: local + value: https://doi.org/10.25504/FAIRsharing.vd694s + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/agmes-agricultural-metadata-element-set + - type: homepage + value: http://aims.fao.org/standards/agmes + - type: namespace + value: http://purl.org/agmes/1.1/ + subject_areas: + - Agricultural economics + - Agriculture + - Aquaculture + - Livestock + title: AgMES (Agricultural Metadata Element Set) + urls: + - msc:m2 + - https://doi.org/10.25504/FAIRsharing.vd694s + - http://www.dcc.ac.uk/resources/metadata-standards/agmes-agricultural-metadata-element-set + - http://aims.fao.org/es/standards/agmes/namespace-specification + - http://aims.fao.org/standards/agmes + - http://purl.org/agmes/1.1/ + - msc:g2 + - http://purl.org/agmes/1.1/ +agris-application-profile: + acronym: AGRIS + field_of_science: + - animal and dairy science + - agricultural sciences + - agriculture + - fisheries + identifier: + - type: local + value: msc:m45 + - type: local + value: https://doi.org/10.25504/FAIRsharing.32e620 + - type: homepage + value: http://www.fao.org/docrep/008/ae909e/ae909e00.htm + - type: namespace + value: http://www.fao.org/agris + subject_areas: + - Agricultural economics + - Agriculture + - Aquaculture + - Livestock + title: AGRIS Application Profile + urls: + - msc:m45 + - https://doi.org/10.25504/FAIRsharing.32e620 + - http://www.fao.org/docrep/008/ae909e/ae909e00.htm + - http://www.fao.org/agris + - msc:m2 + - msc:m15 +amf-academic-metadata-format: + acronym: AMF + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m25 + - type: local + value: https://fairsharing.org/4646 + - type: namespace + value: http://amf.openlib.org + - type: homepage + value: http://amf.openlib.org + - type: schema + value: http://amf.openlib.org/2001/amf.xsd + subject_areas: + - Multidisciplinary + title: Academic Metadata Format + urls: + - fuji:m25 + - https://fairsharing.org/4646 + - http://openlib.org/home/krichel/ebisu.html + - http://amf.openlib.org + - http://amf.openlib.org + - http://amf.openlib.org/2001/amf.xsd +anzlic-metadata-profile: + acronym: ANZLIC + field_of_science: + - cartography + - physical geography + - natural sciences + identifier: + - type: local + value: msc:m46 + - type: local + value: https://fairsharing.org/820 + - type: homepage + value: https://www.anzlic.gov.au/resources/anzlic-metadata-profile + subject_areas: + - Cartography + - Geography + - Topography + title: ANZLIC Metadata Profile + urls: + - msc:m46 + - https://fairsharing.org/820 + - https://www.anzlic.gov.au/resources/anzlic-metadata-profile + - msc:m15 + - msc:m22 +apple-core: + acronym: aDwC + field_of_science: + - botany + - natural sciences + identifier: + - type: local + value: msc:m47 + - type: local + value: https://fairsharing.org/726 + - type: homepage + value: http://code.google.com/p/applecore/wiki/Introduction + subject_areas: + - Botany + title: Apple Core + urls: + - msc:m47 + - https://fairsharing.org/726 + - http://code.google.com/p/applecore/wiki/Introduction + - msc:m9 +ariadne-dataset-catalogue-model: + acronym: ACDM + field_of_science: + - archaeology + - humanities + identifier: + - type: local + value: fuji:m19 + - type: local + value: https://fairsharing.org/4647 + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - type: namespace + value: http://registry.ariadne-infrastructure.eu/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/ + - type: namespace + value: http://ariadne-registry.dcu.gr/schema-definition + - type: homepage + value: http://ariadne-registry.dcu.gr/ + subject_areas: + - Archaeology + title: ARIADNE Dataset Catalogue Model (ACDM) + urls: + - fuji:m19 + - https://fairsharing.org/4647 + - http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - http://registry.ariadne-infrastructure.eu/ + - https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - https://www.ariadne-infrastructure.eu/resource/ao/ + - http://ariadne-registry.dcu.gr/schema-definition + - http://ariadne-registry.dcu.gr/ +asset-description-metadata-schema-adms: + acronym: ADMS + field_of_science: + - social sciences + - political sciences + identifier: + - type: local + value: msc:m48 + - type: local + value: https://doi.org/10.25504/FAIRsharing.es2t25 + - type: homepage + value: http://www.w3.org/TR/vocab-adms/ + - type: namespace + value: http://www.w3.org/ns/adms# + subject_areas: + - Social policy + title: Asset Description Metadata Schema (ADMS) + urls: + - msc:m48 + - https://doi.org/10.25504/FAIRsharing.es2t25 + - http://www.w3.org/TR/vocab-adms/ + - http://www.w3.org/ns/adms# + - msc:m12 +atom-syndication-format: + acronym: ATOM + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m13 + - type: local + value: https://fairsharing.org/4648 + - type: namespace + value: https://www.w3.org/2005/Atom + - type: namespace + value: http://www.w3.org/2005/Atom + - type: homepage + value: https://datatracker.ietf.org/wg/atompub/about/ + subject_areas: + - Multidisciplinary + title: The Atom Syndication Format + urls: + - fuji:m13 + - https://fairsharing.org/4648 + - https://www.w3.org/2005/Atom + - http://www.w3.org/2005/Atom + - https://datatracker.ietf.org/wg/atompub/about/ + - https://datatracker.ietf.org/doc/html/rfc4287 +avm-astronomy-visualization-metadata: + acronym: AVM + field_of_science: + - astronomy + - natural sciences + identifier: + - type: local + value: msc:m3 + - type: local + value: https://doi.org/10.25504/FAIRsharing.338ze0 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/avm-astronomy-visualization-metadata + - type: homepage + value: http://www.virtualastronomy.org/avm_metadata.php + - type: namespace + value: http://www.communicatingastronomy.org/avm/1.0/ + subject_areas: + - Astronomy + title: AVM (Astronomy Visualization Metadata) + urls: + - msc:m3 + - https://doi.org/10.25504/FAIRsharing.338ze0 + - http://www.dcc.ac.uk/resources/metadata-standards/avm-astronomy-visualization-metadata + - http://www.virtualastronomy.org/avm_metadata.php#2 + - http://www.virtualastronomy.org/avm_metadata.php + - http://www.communicatingastronomy.org/avm/1.0/ + - msc:g88 +bibtex-format: + acronym: BibTeX + field_of_science: [] + identifier: + - type: local + value: fuji:m34 + - type: local + value: https://doi.org/10.25504/FAIRsharing.bdf2fe + - type: homepage + value: http://www.bibtex.org/ + - type: namespace + value: http://clarin-pl.eu/ns/experimental/bibtex + - type: namespace + value: http://lindat.mff.cuni.cz/ns/experimental/bibtex + - type: namespace + value: http://repository.clarin.dk/ns/experimental/bibtex + subject_areas: + title: BibTeX + urls: + - fuji:m34 + - https://doi.org/10.25504/FAIRsharing.bdf2fe + - http://www.bibtex.org/ + - http://clarin-pl.eu/ns/experimental/bibtex + - http://lindat.mff.cuni.cz/ns/experimental/bibtex + - http://repository.clarin.dk/ns/experimental/bibtex +carare-metadata-schema: + acronym: CARARE + field_of_science: + - architectural design + - archaeology + - history + - humanities + identifier: + - type: local + value: msc:m49 + - type: local + value: https://doi.org/10.25504/FAIRsharing.ba7c93 + - type: homepage + value: https://pro.carare.eu/doku.php?id=support:metadata-schema + - type: namespace + value: http://www.carare.eu/carareSchema + - type: schema + value: https://pro.carare.eu/lib/exe/fetch.php?media=support:carare-v1_0_6_1.xsd + subject_areas: + - Archaeology + - Architecture + - Cultural heritage + - Cultural property preservation + - History + title: CARARE metadata schema + urls: + - msc:m49 + - https://doi.org/10.25504/FAIRsharing.ba7c93 + - https://pro.carare.eu/doku.php?id=support:metadata-schema + - http://www.carare.eu/carareSchema + - https://pro.carare.eu/lib/exe/fetch.php?media=support:carare-v1_0_6_1.xsd + - msc:m24 +cdwa-lite-schema: + acronym: cdwa-lite + field_of_science: + - humanities + identifier: + - type: local + value: fuji:m30 + - type: local + value: https://fairsharing.org/4649 + - type: homepage + value: https://www.getty.edu/research/publications/electronic_publications/cdwa/cdwalite.html + - type: namespace + value: https://www.getty.edu/CDWA/CDWALite + - type: schema + value: http://www.getty.edu/CDWA/CDWALite/CDWALite-xsd-public-v1-1.xsd + - type: schema + value: http://www.getty.edu/CDWA/CDWALite/CDWALite-xsd-public-v1-0.xsd + subject_areas: + - Humanities + - Cultural heritage + title: CDWA Lite + urls: + - fuji:m30 + - https://fairsharing.org/4649 + - https://www.getty.edu/research/publications/electronic_publications/cdwa/cdwalite.pdf + - https://www.getty.edu/research/publications/electronic_publications/cdwa/cdwalite.html + - https://www.getty.edu/CDWA/CDWALite + - http://www.getty.edu/CDWA/CDWALite/CDWALite-xsd-public-v1-1.xsd + - http://www.getty.edu/CDWA/CDWALite/CDWALite-xsd-public-v1-0.xsd +cedar-template-model: + acronym: CEDAR + field_of_science: + - public administration + - earth and related environmental sciences + - engineering and technology + - medical and health sciences + - clinical medicine + - social sciences + - natural sciences + - medical engineering + - agricultural sciences + - agriculture + identifier: + - type: local + value: msc:m94 + - type: local + value: https://doi.org/10.25504/FAIRsharing.V527H4 + - type: homepage + value: https://more.metadatacenter.org/tools-training/outreach/cedar-template-model + subject_areas: + - Administration + - Agricultural research + - Clinical medicine + - Earth sciences + - Medical information systems + title: CEDAR Template Model + urls: + - msc:m94 + - https://doi.org/10.25504/FAIRsharing.V527H4 + - https://more.metadatacenter.org/tools-training/outreach/cedar-template-model + - https://more.metadatacenter.org/sites/default/files/artifact/CEDAR%20Template%20Model%20v1.5.0_0.pdf +cerif: + acronym: CERIF + field_of_science: + - sciences + identifier: + - type: local + value: msc:m4 + - type: local + value: https://doi.org/10.25504/FAIRsharing.6945dq + - type: homepage + value: http://www.eurocris.org/cerif/main-features-cerif + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.6/CERIF_1.6_2.xsd + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.5/CERIF_1.5_1.xsd + - type: schema + value: https://www.openaire.eu/schema/cris/1.1/openaire-cerif-profile.xsd + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.6-2 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.5-1 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.4-0 + - type: namespace + value: http://www.eurocris.org/ontologies/cerif/1.3# + - type: namespace + value: https://www.openaire.eu/cerif-profile/1.1/ + subject_areas: + - Multidisciplinary + title: CERIF (Common European Research Information Format) + urls: + - msc:m4 + - https://doi.org/10.25504/FAIRsharing.6945dq + - http://www.eurocris.org/Uploads/Web%20pages/CERIF-1.6/documentation/MInfo.html + - http://www.eurocris.org/cerif/main-features-cerif + - https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.6/CERIF_1.6_2.xsd + - https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.5/CERIF_1.5_1.xsd + - https://www.openaire.eu/schema/cris/1.1/openaire-cerif-profile.xsd + - urn:xmlns:org:eurocris:cerif-1.6-2 + - urn:xmlns:org:eurocris:cerif-1.5-1 + - urn:xmlns:org:eurocris:cerif-1.4-0 + - http://www.eurocris.org/ontologies/cerif/1.3# + - https://www.openaire.eu/cerif-profile/1.1/ + - msc:g112 + - msc:g99 + - msc:g100 +cessda-mli-council-european-social-science-data-archives-minimum-level-inf: + acronym: + field_of_science: + - sociology + - economics + - social geography + - social sciences + - demography + identifier: + - type: local + value: msc:m50 + - type: local + value: https://fairsharing.org/4272 + - type: homepage + value: http://www.cessda.org/sharing/managing/3/ + subject_areas: + - Demography + - Economics + - Land use + - Sociology + title: CESSDA MLI - Council of European Social Science Data Archives Minimum Level of Information + urls: + - msc:m50 + - https://fairsharing.org/4272 + - http://www.cessda.org/sharing/managing/3/ + - msc:m13 +cf-climate-and-forecast-metadata-conventions: + acronym: CF + field_of_science: + - meteorology + - climatology + - oceanography + - natural sciences + identifier: + - type: local + value: msc:m5 + - type: local + value: https://doi.org/10.25504/FAIRsharing.f8cd83 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/cf-climate-and-forecast-metadata-conventions + - type: homepage + value: http://cfconventions.org/ + subject_areas: + - Climatology + - Meteorology + - Oceanography + title: CF (Climate and Forecast) Metadata Conventions + urls: + - msc:m5 + - https://doi.org/10.25504/FAIRsharing.f8cd83 + - http://www.dcc.ac.uk/resources/metadata-standards/cf-climate-and-forecast-metadata-conventions + - http://cfconventions.org/documents.html + - http://cfconventions.org/ + - msc:g7 + - msc:g13 + - msc:g68 + - msc:g74 + - msc:g80 + - msc:g83 + - msc:g92 +chardm-astronomical-dataset-characterisation: + acronym: CharDM + field_of_science: [] + identifier: + - type: local + value: fuji:m29 + - type: local + value: https://doi.org/10.25504/FAIRsharing.yYjZWb + - type: homepage + value: https://www.ivoa.net/documents/cover/CharacterisationDM-20070530.html + - type: schema + value: http://www.ivoa.net/xml/Characterisation/Characterisation-v1.11.xsd + subject_areas: + title: CharDM, Data Model for Astronomical DataSet Characterisation + urls: + - fuji:m29 + - https://doi.org/10.25504/FAIRsharing.yYjZWb + - https://www.ivoa.net/documents/cover/CharacterisationDM-20070530.html + - http://www.ivoa.net/xml/Characterisation/Characterisation-v1.11.xsd +cif-crystallographic-information-framework: + acronym: CIF + field_of_science: + - chemical sciences + - engineering and technology + - crystallography + - materials engineering + - natural sciences + identifier: + - type: local + value: msc:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.zr52g5 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/cif-crystallographic-information-framework + - type: homepage + value: http://www.iucr.org/resources/cif + subject_areas: + - Chemistry + - Crystallography + - Materials engineering + title: CIF (Crystallographic Information Framework) + urls: + - msc:m6 + - https://doi.org/10.25504/FAIRsharing.zr52g5 + - http://www.dcc.ac.uk/resources/metadata-standards/cif-crystallographic-information-framework + - http://www.iucr.org/resources/cif/spec + - http://www.iucr.org/resources/cif + - msc:g3 + - msc:g14 + - msc:g27 +cim-common-information-model: + acronym: CIM + field_of_science: + - climatology + - natural sciences + identifier: + - type: local + value: msc:m7 + - type: local + value: https://doi.org/10.25504/FAIRsharing.k3z4q9 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/cim-common-information-model + - type: homepage + value: https://earthsystemcog.org/projects/es-doc-models/cim + - type: schema + value: https://github.com/ES-DOC/esdoc-cim/blob/v1.10.0/cim.xsd + subject_areas: + - Climatology + title: CIM (Common Information Model) + urls: + - msc:m7 + - https://doi.org/10.25504/FAIRsharing.k3z4q9 + - http://www.dcc.ac.uk/resources/metadata-standards/cim-common-information-model + - https://earthsystemcog.org/projects/es-doc-models/cim_versions + - https://earthsystemcog.org/projects/es-doc-models/cim + - https://github.com/ES-DOC/esdoc-cim/blob/v1.10.0/cim.xsd + - msc:g23 + - msc:g24 + - msc:g25 + - msc:g34 +clarivate-data-citation-index-schema: + acronym: dci + field_of_science: + - humanities + - library sciences + identifier: + - type: local + value: fuji:m39 + - type: namespace + value: https://clarivate.com/products/web-of-science/web-science-form/data-citation-index/ + - type: homepage + value: https://clarivate.com/products/scientific-and-academic-research/research-discovery-and-workflow-solutions/webofscience-platform/data-citation-index/ + subject_areas: + - Bibliographic standards + title: Clarivate Data Citation Index Schema + urls: + - fuji:m39 + - https://clarivate.com/products/web-of-science/web-science-form/data-citation-index/ + - https://clarivate.com/products/scientific-and-academic-research/research-discovery-and-workflow-solutions/webofscience-platform/data-citation-index/ +cmd-component-metadata: + acronym: CMDI + field_of_science: + - linguistics + - humanities + - languages and literature + identifier: + - type: local + value: fuji:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2e0599 + - type: namespace + value: http://www.clarin.eu/cmd/ + - type: namespace + value: https://www.clarin.eu/cmd/1 + - type: homepage + value: https://www.clarin.eu/content/component-metadata + - type: namespace + value: http://www.clarin.eu/cmd/1 + - type: schema + value: http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - type: schema + value: https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - type: schema + value: https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd + subject_areas: + - Linguistics + - Languages + title: Component MetaData Specification (CMDI) + urls: + - fuji:m6 + - https://doi.org/10.25504/FAIRsharing.2e0599 + - http://www.clarin.eu/cmd/ + - https://www.clarin.eu/cmd/1 + - https://www.clarin.eu/content/component-metadata + - https://pure.mpg.de/pubman/faces/ViewItemOverviewPage.jsp?itemId=item_1480943 + - http://www.clarin.eu/cmd/1 + - http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd +coards-conventions: + acronym: + field_of_science: + - meteorology + - climatology + - oceanography + - natural sciences + identifier: + - type: local + value: msc:m51 + - type: local + value: https://doi.org/10.25504/FAIRsharing.9614ca + - type: homepage + value: http://ferret.wrc.noaa.gov/noaa_coop/coop_cdf_profile.html + subject_areas: + - Climatology + - Meteorology + - Oceanography + title: COARDS Conventions + urls: + - msc:m51 + - https://doi.org/10.25504/FAIRsharing.9614ca + - http://ferret.wrc.noaa.gov/noaa_coop/coop_cdf_profile.html + - msc:m5 +crossref-schema: + acronym: crossref + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m40 + - type: local + value: https://doi.org/10.25504/FAIRsharing.bbQbSW + - type: homepage + value: http://www.crossref.org/schema + - type: namespace + value: http://www.crossref.org/schema/4.4.0 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.0.xsd + - type: schema + value: https://data.crossref.org/schemas/crossref4.3.7.xsd + - type: namespace + value: http://www.crossref.org/schema/4.3.7 + - type: namespace + value: http://www.crossref.org/schema/4.4.1 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.1.xsd + - type: namespace + value: http://www.crossref.org/schema/4.4.2 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.2.xsd + - type: namespace + value: http://www.crossref.org/schema/4.8.1 + - type: schema + value: https://data.crossref.org/schemas/crossref4.8.1.xsd + - type: namespace + value: http://www.crossref.org/schema/5.3.1 + - type: schema + value: https://data.crossref.org/schemas/crossref5.3.1.xsd + subject_areas: + - Multidisciplinary + title: Crossref Schema + urls: + - fuji:m40 + - https://doi.org/10.25504/FAIRsharing.bbQbSW + - http://www.crossref.org/schema + - http://www.crossref.org/schema/4.4.0 + - https://data.crossref.org/schemas/crossref4.4.0.xsd + - https://data.crossref.org/schemas/crossref4.3.7.xsd + - http://www.crossref.org/schema/4.3.7 + - http://www.crossref.org/schema/4.4.1 + - https://data.crossref.org/schemas/crossref4.4.1.xsd + - http://www.crossref.org/schema/4.4.2 + - https://data.crossref.org/schemas/crossref4.4.2.xsd + - http://www.crossref.org/schema/4.8.1 + - https://data.crossref.org/schemas/crossref4.8.1.xsd + - http://www.crossref.org/schema/5.3.1 + - https://data.crossref.org/schemas/crossref5.3.1.xsd +cruise-summary-reports: + acronym: CSR + field_of_science: + - earth and related environmental sciences + - climatology + - meteorology + - oceanography + - natural sciences + - hydrology + - glaciology + identifier: + - type: local + value: msc:m52 + - type: local + value: https://doi.org/10.25504/FAIRsharing.e36460 + - type: homepage + value: http://www.seadatanet.org/Metadata/CSR + - type: namespace + value: http://www.seadatanet.org + - type: schema + value: http://schemas.seadatanet.org/Standards-Software/Metadata-formats/SDN_CSR_ISO19139_5.2.0.xsd + - type: schema + value: http://schemas.seadatanet.org/StandardsSoftware/Metadata-formats/SDN2_CSR_ISO19139_5.0.0.xsd + subject_areas: + - Climatology + - Earth sciences + - Glaciology + - Hydrology + - Meteorology + - Oceanography + title: Cruise Summary Reports + urls: + - msc:m52 + - https://doi.org/10.25504/FAIRsharing.e36460 + - http://www.seadatanet.org/Metadata/CSR + - http://www.seadatanet.org + - http://schemas.seadatanet.org/Standards-Software/Metadata-formats/SDN_CSR_ISO19139_5.2.0.xsd + - ' http://schemas.seadatanet.org/StandardsSoftware/Metadata-formats/SDN2_CSR_ISO19139_5.0.0.xsd' + - msc:m22 +csdgm-extensions-remote-sensing-metadata: + acronym: CSDGM + field_of_science: + - climatology + - meteorology + - oceanography + - natural sciences + - hydrology + identifier: + - type: local + value: msc:m53 + - type: local + value: https://fairsharing.org/1445 + - type: homepage + value: http://www.fgdc.gov/standards/projects/FGDC-standards-projects/csdgm_rs_ex/MetadataRemoteSensingExtens.pdf + subject_areas: + - Climatology + - Hydrology + - Meteorology + - Oceanography + title: CSDGM Extensions for Remote Sensing Metadata + urls: + - msc:m53 + - https://fairsharing.org/1445 + - http://www.fgdc.gov/standards/projects/FGDC-standards-projects/csdgm_rs_ex/MetadataRemoteSensingExtens.pdf + - msc:m17 +csmd-cclrc-core-scientific-metadata-model: + acronym: CSMD + field_of_science: + - chemical sciences + - engineering and technology + - crystallography + - materials engineering + - biochemistry + - natural sciences + identifier: + - type: local + value: msc:m8 + - type: local + value: https://doi.org/10.25504/FAIRsharing.30fk89 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/csmd-cclrc-core-scientific-metadata-model + - type: homepage + value: http://icatproject-contrib.github.io/CSMD/ + - type: namespace + value: http://www.purl.org/net/CSMD/4.0# + - type: namespace + value: http://www.escience.clrc.ac.uk/schemas/scientific + subject_areas: + - Biochemistry + - Chemistry + - Crystallography + - Materials engineering + title: CSMD (Core Scientific Metadata Model) + urls: + - msc:m8 + - https://doi.org/10.25504/FAIRsharing.30fk89 + - http://www.dcc.ac.uk/resources/metadata-standards/csmd-cclrc-core-scientific-metadata-model + - http://icatproject-contrib.github.io/CSMD/ + - http://www.purl.org/net/CSMD/4.0# + - http://www.escience.clrc.ac.uk/schemas/scientific + - msc:g28 + - msc:g52 +csw-catalogue-schema: + acronym: CSW + field_of_science: + - cartography + - earth and related environmental sciences + - natural sciences + identifier: + - type: local + value: fuji:m32 + - type: local + value: https://fairsharing.org/4650 + - type: schema + value: http://schemas.opengis.net/csw/2.0.2/CSW-publication.xsd + - type: namespace + value: http://www.opengis.net/cat/csw/2.0.2 + - type: namespace + value: http://www.opengis.net/cat/csw/3.0 + - type: schema + value: http://schemas.opengis.net/cat/csw/3.0/cswAll.xsd + - type: homepage + value: https://www.ogc.org/standard/cat/ + subject_areas: + - Cartography + - Earth sciences + title: Catalogue Service for the Web + urls: + - fuji:m32 + - https://fairsharing.org/4650 + - http://schemas.opengis.net/csw/2.0.2/CSW-publication.xsd + - http://www.opengis.net/cat/csw/2.0.2 + - http://www.opengis.net/cat/csw/3.0 + - http://schemas.opengis.net/cat/csw/3.0/cswAll.xsd + - https://www.ogc.org/standard/cat/ +dara-metadata-schema: + acronym: da|ra + field_of_science: + - sociology + - social sciences + - political sciences + identifier: + - type: local + value: fuji:m10 + - type: local + value: https://fairsharing.org/4651 + - type: namespace + value: http://da-ra.de/schema/kernel-4 + - type: schema + value: http://da-ra.de/dara/schemadefinitions/dara.xsd + - type: schema + value: dara_v2.2.1_de_en_19112012.xsd + - type: schema + value: http://www.da-ra.de/fileadmin/media/da-ra.de/Technik/dara_v3.1_de_en_18112014.xsd + - type: homepage + value: https://www.da-ra.de/downloads#metadata + subject_areas: + - Social policy + - Sociology + title: da|ra Metadata Schema + urls: + - fuji:m10 + - https://fairsharing.org/4651 + - http://da-ra.de/schema/kernel-4 + - http://da-ra.de/dara/schemadefinitions/dara.xsd + - dara_v2.2.1_de_en_19112012.xsd + - http://www.da-ra.de/fileadmin/media/da-ra.de/Technik/dara_v3.1_de_en_18112014.xsd + - https://www.da-ra.de/downloads#version-3-0 + - https://www.da-ra.de/downloads#metadata +darwin-core: + acronym: DwC + field_of_science: + - cartography + - marine biology + - earth and related environmental sciences + - ecology + - palaeontology + - physical geography + - zoology + - oceanography + - natural sciences + - biological sciences + - botany + identifier: + - type: local + value: msc:m9 + - type: local + value: https://doi.org/10.25504/FAIRsharing.xvf5y3 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/darwin-core + - type: homepage + value: http://rs.tdwg.org/dwc/index.htm + - type: namespace + value: http://rs.tdwg.org/dwc/terms/ + - type: namespace + value: http://rs.tdwg.org/dwc/iri/ + - type: schema + value: http://rs.tdwg.org/dwc/xsd/tdwg_dwc_simple.xsd + subject_areas: + - Biogeography + - Biological diversity + - Botany + - Cartography + - Earth sciences + - Ecology + - Marine animals + - Oceanography + - Palaeontology + - Physical geography + - Topography + - Zoology + title: Darwin Core + urls: + - msc:m9 + - https://doi.org/10.25504/FAIRsharing.xvf5y3 + - http://www.dcc.ac.uk/resources/metadata-standards/darwin-core + - http://www.tdwg.org/standards/450 + - http://rs.tdwg.org/dwc/index.htm + - http://rs.tdwg.org/dwc/terms/ + - http://rs.tdwg.org/dwc/iri/ + - http://rs.tdwg.org/dwc/xsd/tdwg_dwc_simple.xsd + - msc:g4 + - msc:g44 + - msc:g78 + - msc:g85 + - msc:g94 +darwin-core-geospatial-extension: + acronym: DwC-S + field_of_science: + - cartography + - biological sciences + - physical geography + - natural sciences + identifier: + - type: local + value: msc:m54 + - type: local + value: https://doi.org/10.25504/FAIRsharing.76c06d + - type: homepage + value: http://wiki.tdwg.org/twiki/bin/view/DarwinCore/GeospatialExtension + subject_areas: + - Biogeography + - Cartography + - Topography + title: Darwin Core Geospatial Extension + urls: + - msc:m54 + - https://doi.org/10.25504/FAIRsharing.76c06d + - http://wiki.tdwg.org/twiki/bin/view/DarwinCore/GeospatialExtension + - msc:m9 +data-package: + acronym: + field_of_science: + - sciences + identifier: + - type: local + value: msc:m10 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3b861d + - type: homepage + value: https://frictionlessdata.io/data-packages/ + subject_areas: + - Multidisciplinary + title: Data Package + urls: + - msc:m10 + - https://doi.org/10.25504/FAIRsharing.3b861d + - https://frictionlessdata.io/specs/data-package/ + - https://frictionlessdata.io/data-packages/ + - msc:g101 + - msc:g29 +datacite-metadata-schema: + acronym: datacite + field_of_science: + - sciences + identifier: + - type: local + value: msc:m11 + - type: local + value: https://doi.org/10.25504/FAIRsharing.me4qwe + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/datacite-metadata-schema + - type: homepage + value: http://schema.datacite.org + - type: namespace + value: http://datacite.org/schema/kernel + subject_areas: + - Multidisciplinary + title: DataCite Metadata Schema + urls: + - msc:m11 + - https://doi.org/10.25504/FAIRsharing.me4qwe + - http://www.dcc.ac.uk/resources/metadata-standards/datacite-metadata-schema + - http://schema.datacite.org + - http://datacite.org/schema/kernel + - msc:g18 + - msc:g37 + - msc:g64 + - msc:g112 + - 10.5438/0003 + - 10.5438/0004 + - http://schema.datacite.org/meta/kernel-2.1/doc/DataCite-MetadataKernel_v2.2.pdf + - http://schema.datacite.org/meta/kernel-2.1/metadata.xsd + - http://datacite.org/schema/kernel-2.1 + - 10.5438/0005 + - 10.5438/0006 + - http://schema.datacite.org/meta/kernel-2.2/doc/DataCite-MetadataKernel_v2.2.pdf + - http://schema.datacite.org/meta/kernel-2.2/metadata.xsd + - http://datacite.org/schema/kernel-2.2 + - 10.5438/0008 + - 10.5438/0009 + - http://schema.datacite.org/meta/kernel-3.0/doc/DataCite-MetadataKernel_v3.0.pdf + - http://schema.datacite.org/meta/kernel-3.0/metadata.xsd + - http://datacite.org/schema/kernel-3 + - 10.5438/0010 + - 10.5438/0011 + - http://schema.datacite.org/meta/kernel-3.1/doc/DataCite-MetadataKernel_v3.1.pdf + - http://schema.datacite.org/meta/kernel-3.1/metadata.xsd + - http://datacite.org/schema/kernel-3.1 + - 10.5438/0012 + - 10.5438/0013 + - http://schema.datacite.org/meta/kernel-4.0/doc/DataCite-MetadataKernel_v4.0.pdf + - http://schema.datacite.org/meta/kernel-4.0/metadata.xsd + - http://datacite.org/schema/kernel-4 +dcat-data-catalog-vocabulary: + acronym: DCAT + field_of_science: + - sciences + identifier: + - type: local + value: msc:m12 + - type: local + value: https://doi.org/10.25504/FAIRsharing.h4j3qm + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dcat-data-catalog-vocabulary + - type: homepage + value: http://www.w3.org/TR/vocab-dcat/ + - type: homepage + value: https://www.w3.org/2017/dxwg/wiki/Main_Page + - type: namespace + value: http://www.w3.org/ns/dcat# + subject_areas: + - Multidisciplinary + title: DCAT (Data Catalog Vocabulary) + urls: + - https://www.w3.org/TR/vocab-dcat/#class-dataset + - https://www.w3.org/TR/vocab-dcat/#class-catalog + - msc:m12 + - https://doi.org/10.25504/FAIRsharing.h4j3qm + - http://www.dcc.ac.uk/resources/metadata-standards/dcat-data-catalog-vocabulary + - http://www.w3.org/TR/vocab-dcat/ + - https://www.w3.org/ns/dcat.ttl + - https://www.w3.org/2017/dxwg/wiki/Main_Page + - http://www.w3.org/ns/dcat# + - msc:m15 + - msc:g106 +ddi-data-documentation-initiative: + acronym: DDI + field_of_science: + - law + - sociology + - history + - economics + - humanities + - statistics and probability + - medical and health sciences + - social geography + - public health + - social sciences + - demography + - natural sciences + - political sciences + identifier: + - type: local + value: msc:m13 + - type: local + value: https://doi.org/10.25504/FAIRsharing.1t5ws6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.EZCpPd + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - type: homepage + value: http://www.ddialliance.org/ + - type: namespace + value: http://www.icpsr.umich.edu/DDI + - type: schema + value: http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - type: namespace + value: ddi:codebook:2_5 + - type: namespace + value: ddi:dataset:3_3 + - type: namespace + value: ddi:dataset:3_2 + - type: namespace + value: ddi:dataset:3_1 + - type: namespace + value: ddi:instance:3_1 + - type: namespace + value: ddi:instance:3_2 + - type: namespace + value: ddi:instance:3_3 + - type: namespace + value: ddi:dataset:3_0 + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd + subject_areas: + - Demography + - Economics + - Health policy + - History + - Human geography + - Land use + - Law + - Politics + - Social policy + - Sociology + - Statistics + title: DDI (Data Documentation Initiative) + urls: + - msc:m13 + - https://doi.org/10.25504/FAIRsharing.1t5ws6 + - https://doi.org/10.25504/FAIRsharing.EZCpPd + - http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - http://www.ddialliance.org/Specification/ + - http://www.ddialliance.org/ + - http://www.icpsr.umich.edu/DDI + - http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - ddi:codebook:2_5 + - ddi:dataset:3_3 + - ddi:dataset:3_2 + - ddi:dataset:3_1 + - ddi:instance:3_1 + - ddi:instance:3_2 + - ddi:instance:3_3 + - ddi:dataset:3_0 + - https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd + - msc:g20 + - msc:g31 + - msc:g32 + - msc:g53 + - msc:g55 + - msc:g91 + - msc:g113 +didl-digital-item-declaration-language: + acronym: DIDL + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m4 + - type: local + value: https://fairsharing.org/4652 + - type: namespace + value: urn:mpeg:mpeg21:2002:02-DIDL-NS + - type: homepage + value: https://www.iso.org/standard/35366.html + subject_areas: + - Multidisciplinary + title: Digital Item Declaration Language (DIDL) + urls: + - fuji:m4 + - https://fairsharing.org/4652 + - urn:mpeg:mpeg21:2002:02-DIDL-NS + - http://www.dlib.org/dlib/november03/bekaert/11bekaert.html + - https://www.iso.org/standard/35366.html +dif-directory-interchange-format: + acronym: DIF + field_of_science: + - marine biology + - climatology + - meteorology + - ecology + - biochemistry + - oceanography + - natural sciences + - hydrology + - agricultural sciences + - agriculture + - glaciology + identifier: + - type: local + value: msc:m14 + - type: local + value: https://doi.org/10.25504/FAIRsharing.esxaaq + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dif-directory-interchange-format + - type: homepage + value: http://gcmd.nasa.gov/add/difguide/ + - type: schema + value: https://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/dif_v10.2.xsd + - type: schema + value: http://gcmd.nasa.gov/Aboutus/xml/dif/dif.xsd + - type: schema + value: https://git.earthdata.nasa.gov/projects/EMFD/repos/dif-schemas/browse/10.x/dif.xsd + - type: namespace + value: http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/ + - type: namespace + value: http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif + - type: schema + value: http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/dif_v9.4.xsd + subject_areas: + - Agriculture + - Biochemistry + - Climatology + - Ecology + - Glaciology + - Hydrology + - Marine biology + - Meteorology + - Oceanography + title: DIF (Directory Interchange Format) + urls: + - msc:m14 + - https://doi.org/10.25504/FAIRsharing.esxaaq + - http://www.dcc.ac.uk/resources/metadata-standards/dif-directory-interchange-format + - http://gcmd.nasa.gov/add/difguide/WRITEADIF.pdf + - http://gcmd.nasa.gov/add/difguide/ + - https://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/dif_v10.2.xsd + - http://gcmd.nasa.gov/Aboutus/xml/dif/dif.xsd + - https://git.earthdata.nasa.gov/projects/EMFD/repos/dif-schemas/browse/10.x/dif.xsd + - http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/ + - http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif + - http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/dif_v9.4.xsd + - msc:g8 + - msc:g13 + - msc:g19 + - msc:g46 + - msc:g47 + - msc:g71 +dim-dspace-intermediate-format: + acronym: dspace-dim + field_of_science: [] + identifier: + - type: local + value: fuji:m36 + - type: namespace + value: http://www.dspace.org/xmlns/dspace/dim + - type: homepage + value: https://wiki.lyrasis.org/display/DSPACE/ + subject_areas: + title: DSpace Intermediate Metadata Format + urls: + - fuji:m36 + - http://www.dspace.org/xmlns/dspace/dim + - https://wiki.lyrasis.org/display/DSPACE/ +dryad-metadata-application-profile: + acronym: + field_of_science: + - sciences + identifier: + - type: local + value: msc:m55 + - type: homepage + value: http://wiki.datadryad.org/Metadata_Profile + - type: namespace + value: http://datadryad.org/metadata/ + - type: schema + value: http://datadryad.org/profile/v3.1/dryad.xsd + - type: schema + value: http://datadryad.org/profile/v3/dryad.xsd + - type: schema + value: http://ils.unc.edu/mrc/dryad/version1_0/dryad_1_0.xsd + subject_areas: + - Multidisciplinary + title: Dryad Metadata Application Profile + urls: + - msc:m55 + - http://wiki.datadryad.org/Metadata_Profile + - http://datadryad.org/metadata/ + - http://datadryad.org/profile/v3.1/dryad.xsd + - http://datadryad.org/profile/v3/dryad.xsd + - http://ils.unc.edu/mrc/dryad/version1_0/dryad_1_0.xsd + - msc:m15 +dublin-core: + acronym: DC + field_of_science: + - sciences + identifier: + - type: local + value: msc:m15 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3nx7t + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dublin-core + - type: homepage + value: http://dublincore.org + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/dcterms.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/simpledc20021212.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/dc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/dcmitype.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/simpledc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/qualifieddc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/dc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/dcterms.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/dcmitype.xsd + - type: namespace + value: http://purl.org/dc/elements/1.1/ + - type: namespace + value: http://purl.org/dc/terms/ + - type: namespace + value: http://purl.org/dc/dcmitype/ + subject_areas: + - Multidisciplinary + title: Dublin Core + urls: + - msc:m15 + - https://doi.org/10.25504/FAIRsharing.3nx7t + - http://www.dcc.ac.uk/resources/metadata-standards/dublin-core + - http://dublincore.org/specifications/ + - http://dublincore.org + - http://dublincore.org/schemas/xmls/qdc/2008/02/11/dcterms.xsd + - http://dublincore.org/schemas/xmls/simpledc20021212.xsd + - http://dublincore.org/schemas/xmls/qdc/2008/02/11/dc.xsd + - http://dublincore.org/schemas/xmls/qdc/2008/02/11/dcmitype.xsd + - http://dublincore.org/schemas/xmls/qdc/2008/02/11/simpledc.xsd + - http://dublincore.org/schemas/xmls/qdc/2008/02/11/qualifieddc.xsd + - http://dublincore.org/schemas/xmls/qdc/dc.xsd + - http://dublincore.org/schemas/xmls/qdc/dcterms.xsd + - http://dublincore.org/schemas/xmls/qdc/dcmitype.xsd + - http://purl.org/dc/elements/1.1/ + - http://purl.org/dc/terms/ + - http://purl.org/dc/dcmitype/ + - msc:g1 + - msc:g13 + - msc:g121 + - msc:g35 + - msc:g36 + - msc:g37 + - msc:g39 + - msc:g73 + - msc:g112 + - msc:g55 + - msc:g90 +dublin-core-qualified: + acronym: QDC + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3nx7t + - type: homepage + value: https://www.dublincore.org/specifications/dublin-core/dcmes-qualifiers/ + - type: namespace + value: urn:dc:qdc:container + - type: namespace + value: figshare:oai:qdc + - type: namespace + value: http://naca.central.cranfield.ac.uk/ethos-oai/2.0/ + - type: namespace + value: http://ora.ox.ac.uk/oai-pmh/metadata-formats/solo_dc + - type: schema + value: https://cocoon.huma-num.fr/schemas/dcq.xsd + - type: namespace + value: http://crdo.risc.cnrs.fr/schemas/dcq/ + - type: namespace + value: http://oai.base-search.net/base_dc/ + - type: namespace + value: http://oai.base-search.net/base_dc + - type: schema + value: http://oai.base-search.net/base_dc/base_dc.xsd + subject_areas: + - Multidisciplinary + title: Qualified Dublin Core + urls: + - fuji:m22 + - https://doi.org/10.25504/FAIRsharing.3nx7t + - https://www.dublincore.org/specifications/dublin-core/dcmes-qualifiers/ + - urn:dc:qdc:container + - figshare:oai:qdc + - http://naca.central.cranfield.ac.uk/ethos-oai/2.0/ + - http://ora.ox.ac.uk/oai-pmh/metadata-formats/solo_dc + - https://cocoon.huma-num.fr/schemas/dcq.xsd + - http://crdo.risc.cnrs.fr/schemas/dcq/ + - http://oai.base-search.net/base_dc/ + - http://oai.base-search.net/base_dc + - http://oai.base-search.net/base_dc/base_dc.xsd + - msc:m15 +dwc-germplasm: + acronym: + field_of_science: + - botany + - natural sciences + identifier: + - type: local + value: msc:m56 + - type: local + value: https://doi.org/10.25504/FAIRsharing.hgsFLe + - type: homepage + value: http://code.google.com/p/darwincore-germplasm/ + - type: namespace + value: http://purl.org/germplasm# + - type: namespace + value: http://purl.org/germplasm/germplasmTerm# + subject_areas: + - Botany + title: DwC Germplasm + urls: + - msc:m56 + - https://doi.org/10.25504/FAIRsharing.hgsFLe + - http://code.google.com/p/darwincore-germplasm/ + - http://purl.org/germplasm# + - http://purl.org/germplasm/germplasmTerm# + - msc:m9 +ead-encoded-archival-description: + acronym: ead + field_of_science: + - history + - humanities + identifier: + - type: local + value: msc:m96 + - type: local + value: https://doi.org/10.25504/FAIRsharing.95f59a + - type: homepage + value: https://www.loc.gov/ead/ + - type: namespace + value: urn:isbn:1-931666-22-9 + - type: namespace + value: http://ead3.archivists.org/schema + - type: namespace + value: http://ead3.archivists.org/schema/ + subject_areas: + - History + title: EAD (Encoded Archival Description) + urls: + - msc:m96 + - https://doi.org/10.25504/FAIRsharing.95f59a + - https://www.loc.gov/ead/ + - urn:isbn:1-931666-22-9 + - http://ead3.archivists.org/schema + - http://ead3.archivists.org/schema/ + - msc:g104 + - msc:g114 + - msc:g121 + - https://www.loc.gov/ead/tglib1998/ + - https://www.loc.gov/ead/ag/aghome.html + - https://www.loc.gov/ead/ead.xsd + - ftp://ftp.loc.gov/pub/ead/ead.dtd + - https://www.loc.gov/ead/tglib/ + - https://www.loc.gov/ead/ead3.xsd + - https://www.loc.gov/ead/ead3.dtd + - https://www.loc.gov/ead/EAD3taglib/EAD3.html +ebank-uk-metadata-application-profile: + acronym: + field_of_science: + - crystallography + - natural sciences + identifier: + - type: local + value: msc:m57 + - type: local + value: https://doi.org/10.25504/FAIRsharing.ad4856 + - type: homepage + value: http://ecrystals.chem.soton.ac.uk + - type: schema + value: http://naca.central.cranfield.ac.uk/ethos-oai/2.0/uketd_dc.xsd + - type: namespace + value: http://naca.central.cranfield.ac.uk/ethos-oai/uketd_dc/ + subject_areas: + - Crystallography + title: eBank UK Metadata Application Profile + urls: + - msc:m57 + - https://doi.org/10.25504/FAIRsharing.ad4856 + - http://ecrystals.chem.soton.ac.uk + - http://naca.central.cranfield.ac.uk/ethos-oai/2.0/uketd_dc.xsd + - http://naca.central.cranfield.ac.uk/ethos-oai/uketd_dc/ + - msc:m15 +edm-europeana-data-model: + acronym: EDM + field_of_science: + - humanities + identifier: + - type: local + value: fuji:m33 + - type: local + value: https://fairsharing.org/4653 + - type: homepage + value: https://pro.europeana.eu/page/edm-documentation + - type: namespace + value: http://www.europeana.eu/schemas/edm/ + - type: namespace + value: http://www.europeana.eu/schemas/edm + - type: namespace + value: http://www.europeana.eu/schemas/ese/ + subject_areas: + - Humanities + - Cultural heritage + title: Europeana Data Model (EDM) + urls: + - fuji:m33 + - https://fairsharing.org/4653 + - https://pro.europeana.eu/page/edm-documentation + - http://www.europeana.eu/schemas/edm/ + - http://www.europeana.eu/schemas/edm + - http://www.europeana.eu/schemas/ese/ +edmed-metadata-profile: + acronym: + field_of_science: + - hydrogeology + - climatology + - meteorology + - ecology + - soil sciences + - environmental sciences + - oceanography + - natural sciences + - hydrology + - glaciology + identifier: + - type: local + value: msc:m58 + - type: local + value: https://doi.org/10.25504/FAIRsharing.ed7f20 + - type: homepage + value: https://www.bodc.ac.uk/data/information_and_inventories/edmed/ + - type: schema + value: EDMED_sdn_V1.2.xsd + subject_areas: + - Climatology + - Ecology + - Environmental sciences + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Soil sciences + title: EDMED Metadata Profile + urls: + - msc:m58 + - https://doi.org/10.25504/FAIRsharing.ed7f20 + - https://www.bodc.ac.uk/data/information_and_inventories/edmed/ + - EDMED_sdn_V1.2.xsd + - msc:m22 +emblem-metadata-schema: + acronym: Emblem + field_of_science: + - humanities + identifier: + - type: local + value: fuji:m16 + - type: local + value: https://fairsharing.org/4654 + - type: homepage + value: http://diglib.hab.de/rules/schema/emblem/ + - type: namespace + value: http://diglib.hab.de/rules/schema/emblem + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-3.xsd + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-2.xsd + subject_areas: + - Humanities + title: Emblem XML-Schema + urls: + - fuji:m16 + - https://fairsharing.org/4654 + - http://diglib.hab.de/rules/schema/emblem/ + - http://diglib.hab.de/rules/schema/emblem + - http://diglib.hab.de/rules/schema/emblem/emblem-1-3.xsd + - http://diglib.hab.de/rules/schema/emblem/emblem-1-2.xsd +eml-ecological-metadata-language: + acronym: EML + field_of_science: + - ecology + - zoology + - natural sciences + - biological sciences + - botany + identifier: + - type: local + value: msc:m16 + - type: local + value: https://doi.org/10.25504/FAIRsharing.r3vtvx + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/eml-ecological-metadata-language + - type: homepage + value: https://eml.ecoinformatics.org/ + - type: namespace + value: eml://eml.ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.1 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.1 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.0 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.1 + - type: schema + value: https://eml.ecoinformatics.org/schema/eml_xsd + subject_areas: + - Biological diversity + - Botany + - Ecology + - Zoology + title: EML (Ecological Metadata Language) + urls: + - msc:m16 + - https://doi.org/10.25504/FAIRsharing.r3vtvx + - http://www.dcc.ac.uk/resources/metadata-standards/eml-ecological-metadata-language + - https://eml.ecoinformatics.org/ + - https://eml.ecoinformatics.org/schema + - eml://eml.ecoinformatics.org/eml-2.0.0 + - eml://ecoinformatics.org/eml-2.0.0 + - eml://ecoinformatics.org/eml-2.0.1 + - eml://ecoinformatics.org/eml-2.1.0 + - eml://ecoinformatics.org/eml-2.1.1 + - https://eml.ecoinformatics.org/eml-2.2.0 + - https://eml.ecoinformatics.org/eml-2.2.1 + - https://eml.ecoinformatics.org/schema/eml_xsd + - msc:g119 + - msc:g44 + - msc:g63 + - msc:g66 + - msc:g72 + - 10.5063/F11834T2 +epicur-metadata-schema: + acronym: epicur + field_of_science: [] + identifier: + - type: local + value: fuji:m21 + - type: local + value: https://fairsharing.org/4659 + - type: namespace + value: urn:nbn:de:1111-2004033116 + - type: schema + value: https://files.dnb.de/Web/xepicur.xsd + - type: homepage + value: https://wiki.dnb.de/display/URNSERVDOK/xepicur+-+XML-Datentransferformat+zur+Verwaltung+von+URN + subject_areas: + title: xepicur + urls: + - fuji:m21 + - https://fairsharing.org/4659 + - urn:nbn:de:1111-2004033116 + - ' https://files.dnb.de/Web/xepicur.xsd' + - https://wiki.dnb.de/display/URNSERVDOK/xepicur+-+XML-Datentransferformat+zur+Verwaltung+von+URN +eprints-xml: + acronym: EPrints + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m23 + - type: namespace + value: http://eprints.org/ep2/data/2.0 + - type: homepage + value: https://wiki.eprints.org/w/XML_Export_Format + subject_areas: + - Multidisciplinary + title: EPrints XML + urls: + - fuji:m23 + - http://eprints.org/ep2/data/2.0 + - https://wiki.eprints.org/w/XML_Export_Format +etdms-metadata-schema: + acronym: ETD-MS + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m17 + - type: local + value: https://fairsharing.org/4660 + - type: homepage + value: https://ndltd.org/metadata/ + - type: namespace + value: http://www.ndltd.org/standards/metadata/etdms/1.1/ + - type: namespace + value: http://www.ndltd.org/standards/metadata/etdms/1.0/ + - type: schema + value: http://www.ndltd.org/standards/metadata/etdms/1.1/etdms11.xsd + - type: schema + value: http://www.ndltd.org/standards/metadata/etdms/1.1/etdmsdc.xsd + - type: schema + value: http://www.ndltd.org/standards/metadata/etdms/1.1/etdmsdcterms.xsd + - type: schema + value: http://www.ndltd.org/standards/metadata/etdms/1.0/etdms.xsd + - type: namespace + value: http://www.ndltd.org/standards/metadata/etdms/1-0/ + subject_areas: + - Multidisciplinary + title: ETD-MS an Interoperability Metadata Standard for Electronic Theses and Dissertations + urls: + - fuji:m17 + - https://fairsharing.org/4660 + - https://ndltd.org/metadata/ + - http://www.ndltd.org/standards/metadata/etdms/1.1/ + - http://www.ndltd.org/standards/metadata/etdms/1.0/ + - http://www.ndltd.org/standards/metadata/etdms/1.1/etdms11.xsd + - http://www.ndltd.org/standards/metadata/etdms/1.1/etdmsdc.xsd + - http://www.ndltd.org/standards/metadata/etdms/1.1/etdmsdcterms.xsd + - http://www.ndltd.org/standards/metadata/etdms/1.0/etdms.xsd + - http://www.ndltd.org/standards/metadata/etdms/1-0/ +eurisco-descriptors: + acronym: + field_of_science: [] + identifier: + - type: local + value: msc:m85 + - type: homepage + value: https://www.ecpgr.cgiar.org/resources/germplasm-databases/eurisco-catalogue + subject_areas: + title: EURISCO Descriptors + urls: + - msc:m85 + - http://www.ecpgr.cgiar.org/fileadmin/templates/ecpgr.org/upload/MISC/EURISCO_Descriptors.pdf + - https://www.ecpgr.cgiar.org/resources/germplasm-databases/eurisco-catalogue +fdsn-seismograph: + acronym: + field_of_science: + - geophysics + - earth and related environmental sciences + - natural sciences + identifier: + - type: local + value: fuji:m8 + - type: local + value: https://fairsharing.org/1434 + - type: namespace + value: http://www.fdsn.org/xml/station/1 + - type: homepage + value: http://www.fdsn.org/xml/station/ + subject_areas: + - Earth sciences + - Geophysics + title: International Federation of Digital Seismograph Networks StationXML (FDSN StationXML) + urls: + - fuji:m8 + - https://fairsharing.org/1434 + - http://www.fdsn.org/xml/station/1 + - http://www.fdsn.org/xml/station/ + - http://docs.fdsn.org/projects/stationxml/en/latest/ +fgdccsdgm-biological-data-profile: + acronym: + field_of_science: + - biological sciences + - natural sciences + identifier: + - type: local + value: msc:m59 + - type: homepage + value: http://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/biometadata/biodatap.pdf + subject_areas: + - Biogeography + title: FGDC/CSDGM Biological Data Profile + urls: + - msc:m59 + - http://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/biometadata/biodatap.pdf + - msc:m17 +fgdccsdgm-federal-geographic-data-committee-content-standard-digital-ge: + acronym: fgdc + field_of_science: + - cartography + - marine biology + - climatology + - meteorology + - physical geography + - social geography + - biochemistry + - social sciences + - oceanography + - natural sciences + - hydrology + identifier: + - type: local + value: msc:m17 + - type: local + value: https://fairsharing.org/1445 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/fgdccsdgm-federal-geographic-data-committee-content-standard-digital-ge + - type: homepage + value: http://www.fgdc.gov/metadata/geospatial-metadata-standards/ + - type: schema + value: https://www.fgdc.gov/schemas/metadata/fgdc-std-001-1998.xsd + - type: schema + value: https://www.fgdc.gov/schemas/metadata/fgdc-std-001.2-2001.xsd + - type: namespace + value: https://www.fgdc.gov/schemas/metadata/ + - type: namespace + value: http://www.fgdc.gov/metadata/csdgm/index_html + subject_areas: + - Biochemistry + - Cartography + - Climatology + - Geography + - Hydrology + - Land use + - Marine biology + - Meteorology + - Oceanography + - Topography + title: FGDC/CSDGM (Federal Geographic Data Committee Content Standard for Digital Geospatial Metadata) + urls: + - msc:m17 + - https://fairsharing.org/1445 + - http://www.dcc.ac.uk/resources/metadata-standards/fgdccsdgm-federal-geographic-data-committee-content-standard-digital-ge + - http://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/base-metadata/v2_0698.pdf + - http://www.fgdc.gov/metadata/geospatial-metadata-standards/ + - https://www.fgdc.gov/schemas/metadata/fgdc-std-001-1998.xsd + - https://www.fgdc.gov/schemas/metadata/fgdc-std-001.2-2001.xsd + - https://www.fgdc.gov/schemas/metadata/ + - http://www.fgdc.gov/metadata/csdgm/index_html + - msc:g13 + - msc:g75 +fits-flexible-image-transport-system: + acronym: + field_of_science: + - astronomy + - astrophysics + - natural sciences + identifier: + - type: local + value: msc:m18 + - type: local + value: https://doi.org/10.25504/FAIRsharing.xvash1 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/fits-flexible-image-transport-system + - type: homepage + value: http://fits.gsfc.nasa.gov/fits_standard.html + subject_areas: + - Astronomy + - Astrophysics + - Sun + title: FITS (Flexible Image Transport System) + urls: + - msc:m18 + - https://doi.org/10.25504/FAIRsharing.xvash1 + - http://www.dcc.ac.uk/resources/metadata-standards/fits-flexible-image-transport-system + - http://fits.gsfc.nasa.gov/fits_standard.html + - http://fits.gsfc.nasa.gov/fits_standard.html + - msc:g9 + - msc:g40 + - msc:g51 + - msc:g60 + - msc:g61 + - msc:g89 + - msc:g95 +fits-world-coordinate-system-wcs: + acronym: + field_of_science: + - astronomy + - astrophysics + - natural sciences + identifier: + - type: local + value: msc:m60 + - type: homepage + value: http://fits.gsfc.nasa.gov/fits_wcs.html + subject_areas: + - Astronomy + - Astrophysics + - Sun + title: FITS World Coordinate System (WCS) + urls: + - msc:m60 + - http://fits.gsfc.nasa.gov/fits_wcs.html + - msc:m18 +gbif-metadata-profile: + acronym: + field_of_science: + - ecology + - zoology + - natural sciences + - biological sciences + - botany + identifier: + - type: local + value: msc:m61 + - type: homepage + value: http://rs.gbif.org/schema/eml-gbif-profile/ + subject_areas: + - Biogeography + - Biological diversity + - Botany + - Ecology + - Zoology + title: GBIF Metadata Profile + urls: + - msc:m61 + - http://rs.gbif.org/schema/eml-gbif-profile/ + - msc:m16 + - http://rs.gbif.org/schema/eml-gbif-profile/1.0.2/eml-gbif-profile.xsd + - http://rs.gbif.org/schema/eml-gbif-profile/1.1/eml-gbif-profile.xsd +genome-metadata: + acronym: + field_of_science: + - genetics + - natural sciences + identifier: + - type: local + value: msc:m19 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/genome-metadata + - type: homepage + value: http://enews.patricbrc.org/faqs/genome-metadata-faqs/ + subject_areas: + - Genetics + title: Genome Metadata + urls: + - msc:m19 + - http://www.dcc.ac.uk/resources/metadata-standards/genome-metadata + - http://enews.patricbrc.org/faqs/genome-metadata-faqs/ +georss-encoding-standard: + acronym: + field_of_science: + - earth and related environmental sciences + - natural sciences + identifier: + - type: local + value: fuji:m1 + - type: local + value: https://fairsharing.org/4663 + - type: homepage + value: http://www.georss.org + - type: namespace + value: http://www.georss.org/georss/ + - type: namespace + value: http://schemas.opengis.net/georss/1.0/ + subject_areas: + - Earth sciences + title: GeoRSS + urls: + - fuji:m1 + - https://fairsharing.org/4663 + - http://www.georss.org + - http://www.georss.org/georss/ + - http://schemas.opengis.net/georss/1.0/ +gesmests-generic-statistical-message-time-series: + acronym: + field_of_science: + - statistics and probability + - economics + - social sciences + - natural sciences + - political sciences + identifier: + - type: local + value: msc:m62 + - type: homepage + value: http://www.ecb.int/stats/services/sdmx/html/index.en.html + subject_areas: + - Economics + - Social policy + - Statistics + title: GESMES/TS (Generic Statistical Message for Time Series) + urls: + - msc:m62 + - http://www.ecb.int/stats/services/sdmx/html/index.en.html + - msc:m38 +gsim-generic-statistical-information-model: + acronym: + field_of_science: + - statistics and probability + - natural sciences + identifier: + - type: local + value: msc:m63 + - type: local + value: https://doi.org/10.25504/FAIRsharing.22bb25 + - type: homepage + value: http://www1.unece.org/stat/platform/display/metis/Generic+Statistical+Information+Model + subject_areas: + - Statistics + title: GSIM (Generic Statistical Information Model) + urls: + - msc:m63 + - https://doi.org/10.25504/FAIRsharing.22bb25 + - http://www1.unece.org/stat/platform/display/metis/Generic+Statistical+Information+Model + - msc:m13 +hispid-herbarium-information-standards-and-protocols-interchange-data: + acronym: + field_of_science: + - botany + - natural sciences + identifier: + - type: local + value: msc:m64 + - type: local + value: https://doi.org/10.25504/FAIRsharing.y49yj6 + - type: homepage + value: http://www.rbg.vic.gov.au/wiki/hiscom/index.php/HISPID_5 + subject_areas: + - Botany + title: HISPID (Herbarium Information Standards and Protocols for Interchange of Data) + urls: + - msc:m64 + - https://doi.org/10.25504/FAIRsharing.y49yj6 + - http://www.rbg.vic.gov.au/wiki/hiscom/index.php/HISPID_5 + - msc:m1 +idf-international-doi-foundation-metadata-kernel: + acronym: + field_of_science: [] + identifier: + - type: local + value: msc:m86 + - type: homepage + value: https://www.doi.org/the-identifier/resources/handbook/doi_kernel_xml_schema/ + - type: schema + value: https://www.doi.org/doi_schemas/DOIMetadataKernel.xsd + - type: namespace + value: http://www.doi.org/2010/DOISchema + subject_areas: + title: IDF (International DOI Foundation) Metadata Kernel + urls: + - msc:m86 + - https://www.doi.org/the-identifier/resources/handbook/doi_kernel_xml_schema/ + - https://www.doi.org/doi_schemas/DOIMetadataKernel.xsd + - http://www.doi.org/2010/DOISchema +imdi-metadata-schema: + acronym: IMDI + field_of_science: + - linguistics + - humanities + identifier: + - type: local + value: fuji:m15 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2cfb88 + - type: namespace + value: http://www.mpi.nl/IMDI/Schema/IMDI + - type: namespace + value: http://www.mpi.nl/IMDI/schemas/xsd/ + - type: schema + value: https://www.mpi.nl/IMDI/Schema/IMDI_3.0.xsd + - type: homepage + value: https://archive.mpi.nl/forums/t/imdi-metadata-information/2933 + subject_areas: + - Humanities + - Linguistics + title: IMDI Metadata Standard + urls: + - fuji:m15 + - https://doi.org/10.25504/FAIRsharing.2cfb88 + - http://www.mpi.nl/IMDI/Schema/IMDI + - http://www.mpi.nl/IMDI/schemas/xsd/ + - https://www.mpi.nl/IMDI/Schema/IMDI_3.0.xsd + - https://archive.mpi.nl/forums/t/imdi-metadata-information/2933 +impex-data-model: + acronym: + field_of_science: + - astronomy + - natural sciences + identifier: + - type: local + value: msc:m65 + - type: homepage + value: http://meetingorganizer.copernicus.org/EPSC2012/EPSC2012-360.pdf + subject_areas: + - Astronomical systems + - Astronomy + - Sun + title: IMPEx Data Model + urls: + - msc:m65 + - http://meetingorganizer.copernicus.org/EPSC2012/EPSC2012-360.pdf + - msc:m39 +inspire-metadata-regulation: + acronym: + field_of_science: + - cartography + - earth and related environmental sciences + - hydrogeology + - climatology + - meteorology + - physical geography + - oceanography + - natural sciences + - hydrology + - glaciology + identifier: + - type: local + value: msc:m66 + - type: local + value: https://doi.org/10.25504/FAIRsharing.nrx5kk + - type: homepage + value: http://inspire.ec.europa.eu/ + - type: namespace + value: http://inspire.ec.europa.eu/schemas/common/1.0/common.xsd + - type: namespace + value: http://inspire.ec.europa.eu/schemas/common/1.0/network.xsd + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Topography + title: INSPIRE Metadata Regulation + urls: + - msc:m66 + - https://doi.org/10.25504/FAIRsharing.nrx5kk + - http://inspire.ec.europa.eu/ + - http://inspire.ec.europa.eu/schemas/common/1.0/common.xsd + - http://inspire.ec.europa.eu/schemas/common/1.0/network.xsd + - msc:m22 +international-virtual-observatory-alliance-technical-specifications: + acronym: IVOA + field_of_science: + - astronomy + - natural sciences + identifier: + - type: local + value: msc:m20 + - type: homepage + value: http://ivoa.net/documents/ + subject_areas: + - Astronomy + title: International Virtual Observatory Alliance Technical Specifications + urls: + - msc:m20 + - http://www.ivoa.net/documents/#specs + - http://ivoa.net/documents/ + - msc:g5 + - msc:g41 + - msc:g93 +isa-tab: + acronym: + field_of_science: + - engineering and technology + - cell metabolism + - genetics + - molecular biology + - biochemistry + - biophysics + - natural sciences + - biological sciences + - cell biology + identifier: + - type: local + value: msc:m21 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/isa-tab + - type: homepage + value: http://isatab.sourceforge.net/format.html + subject_areas: + - Biochemicals + - Biochemistry + - Biophysics + - Biotechnology + - Cell biology + - Genetics + - Metabolism + - Molecular biology + title: ISA-Tab + urls: + - msc:m21 + - http://www.dcc.ac.uk/resources/metadata-standards/isa-tab + - http://isatab.sourceforge.net/docs/ISA-TAB_release-candidate-1_v1.0_24nov08.pdf + - http://isatab.sourceforge.net/format.html + - msc:g50 + - msc:g59 + - msc:g69 + - msc:g76 +isa-tab-nano: + acronym: + field_of_science: + - biological sciences + - engineering and technology + - biochemistry + - natural sciences + identifier: + - type: local + value: msc:m67 + - type: local + value: https://doi.org/10.25504/FAIRsharing.njqq5b + - type: homepage + value: https://wiki.nci.nih.gov/display/ICR/ISA-TAB-Nano#ISA-TAB-Nano-title + subject_areas: + - Biochemicals + - Biotechnology + title: ISA-TAB Nano + urls: + - msc:m67 + - https://doi.org/10.25504/FAIRsharing.njqq5b + - https://wiki.nci.nih.gov/display/ICR/ISA-TAB-Nano#ISA-TAB-Nano-title + - msc:m21 +isaconfig-dixa: + acronym: + field_of_science: + - toxicology + - medical and health sciences + - genetics + - natural sciences + identifier: + - type: local + value: msc:m68 + - type: homepage + value: https://bitbucket.org/kanterae/isaconfig-dixa + subject_areas: + - Genetics + - Toxicology + title: isaconfig-diXa + urls: + - msc:m68 + - https://bitbucket.org/kanterae/isaconfig-dixa + - msc:m21 +iso-19115: + acronym: ISO19115 + field_of_science: + - cartography + - earth and related environmental sciences + - hydrogeology + - climatology + - meteorology + - physical geography + - oceanography + - natural sciences + - hydrology + - geology + - glaciology + identifier: + - type: local + value: msc:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.t7mby9 + - type: homepage + value: http://www.iso.org/iso/catalogue_detail.htm?csnumber=53798 + - type: namespace + value: http://www.isotc211.org/2005/gmd/gmd.xsd + - type: namespace + value: http://www.isotc211.org/2005/gmd + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mds/2.0 + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mds/1.0 + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mdb/2.0 + - type: namespace + value: http://bluenet3.antcrc.utas.edu.au/mcp + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Geology + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Topography + title: ISO 19115 + urls: + - msc:m22 + - https://doi.org/10.25504/FAIRsharing.t7mby9 + - http://standards.iso.org/iso/19115/-3/ + - http://www.iso.org/iso/catalogue_detail.htm?csnumber=53798 + - http://www.isotc211.org/2005/gmd/gmd.xsd + - http://www.isotc211.org/2005/gmd + - http://standards.iso.org/iso/19115/-3/mds/2.0 + - http://standards.iso.org/iso/19115/-3/mds/1.0 + - http://standards.iso.org/iso/19115/-3/mdb/2.0 + - http://bluenet3.antcrc.utas.edu.au/mcp + - msc:g6 + - msc:g8 + - msc:g10 + - msc:g26 + - msc:g33 + - msc:g37 + - msc:g48 + - msc:g49 + - msc:g56 +iso-19115-2-imagery-and-gridded-data: + acronym: + field_of_science: + - cartography + - earth and related environmental sciences + - climatology + - meteorology + - physical geography + - social geography + - social sciences + - oceanography + - natural sciences + - hydrology + - glaciology + identifier: + - type: local + value: msc:m69 + - type: local + value: https://doi.org/10.25504/FAIRsharing.a6b18c + - type: homepage + value: http://www.iso.org/iso/catalogue_detail.htm?csnumber=39229 + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Glaciology + - Hydrology + - Land use + - Meteorology + - Oceanography + - Topography + title: ISO 19115-2 - Imagery and gridded data + urls: + - msc:m69 + - https://doi.org/10.25504/FAIRsharing.a6b18c + - http://www.iso.org/iso/catalogue_detail.htm?csnumber=39229 + - msc:m22 +iso-19115-north-american-profile: + acronym: + field_of_science: + - cartography + - physical geography + - natural sciences + identifier: + - type: local + value: msc:m70 + - type: local + value: https://doi.org/10.25504/FAIRsharing.b4af3c + - type: homepage + value: http://www.fgdc.gov/standards/projects/incits-l1-standards-projects/NAP-Metadata + subject_areas: + - Cartography + - Geography + - Topography + title: ISO 19115 North American Profile + urls: + - msc:m70 + - https://doi.org/10.25504/FAIRsharing.b4af3c + - http://www.fgdc.gov/standards/projects/incits-l1-standards-projects/NAP-Metadata + - msc:m22 +iso-19136: + acronym: + field_of_science: + - cartography + - earth and related environmental sciences + - hydrogeology + - climatology + - meteorology + - physical geography + - oceanography + - natural sciences + - hydrology + - geology + - glaciology + identifier: + - type: local + value: fuji:m3 + - type: local + value: https://doi.org/10.25504/FAIRsharing.d69ee0 + - type: homepage + value: www.iso.org/iso/iso_catalogue/catalogue_tc/catalogue_detail.htm?csnumber=32554 + - type: namespace + value: http://www.opengis.net/gml/3.2 + - type: namespace + value: http://schemas.opengis.net/gml/3.2.1/gml.xsd + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Geology + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Topography + title: Geography Markup Language + urls: + - fuji:m3 + - https://doi.org/10.25504/FAIRsharing.d69ee0 + - https://www.ogc.org/standards/gml + - www.iso.org/iso/iso_catalogue/catalogue_tc/catalogue_detail.htm?csnumber=32554 + - http://www.opengis.net/gml/3.2 + - http://schemas.opengis.net/gml/3.2.1/gml.xsd +ivoa-registry-metdata: + acronym: ivoa-reg + field_of_science: + - astronomy + - natural sciences + identifier: + - type: local + value: fuji:m35 + - type: local + value: https://doi.org/10.25504/FAIRsharing.RycpEU + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/international-virtual-observatory-alliance-technical-specifications + - type: namespace + value: http://www.ivoa.net/xml/VORegistry/v1.0 + - type: namespace + value: http://www.ivoa.net/xml/RegistryInterface/v1.0 + - type: homepage + value: https://www.ivoa.net/Documents/cover/RDFVORegistry-20070920.html + subject_areas: + - Astronomy + title: IVOA Registry Interfaces + urls: + - fuji:m35 + - https://doi.org/10.25504/FAIRsharing.RycpEU + - http://www.dcc.ac.uk/resources/metadata-standards/international-virtual-observatory-alliance-technical-specifications + - https://www.ivoa.net/documents/RegistryInterface/20180723/REC-RegistryInterface-1.1.html + - http://www.ivoa.net/xml/VORegistry/v1.0 + - http://www.ivoa.net/xml/RegistryInterface/v1.0 + - https://www.ivoa.net/Documents/cover/RDFVORegistry-20070920.html +jats-schema: + acronym: jats + field_of_science: + - humanities + - library sciences + identifier: + - type: local + value: fuji:m41 + - type: local + value: https://doi.org/10.25504/FAIRsharing.smr0rh + - type: homepage + value: http://jats.nlm.nih.gov/publishing/ + - type: schema + value: https://jats.nlm.nih.gov/publishing/1.0/xsd/JATS-journalpublishing1.xsd + - type: namespace + value: http://jats.nlm.nih.gov/publishing/1.0 + subject_areas: + - Bibliographic standards + - Information/library standards + title: Journal Publishing Tag Set (Jats) + urls: + - fuji:m41 + - https://doi.org/10.25504/FAIRsharing.smr0rh + - http://jats.nlm.nih.gov/publishing/ + - https://jats.nlm.nih.gov/publishing/1.0/xsd/JATS-journalpublishing1.xsd + - http://jats.nlm.nih.gov/publishing/1.0 +lido-lightweight-information-describing-objects: + acronym: LIDO + field_of_science: + - humanities + identifier: + - type: local + value: fuji:m18 + - type: local + value: https://doi.org/10.25504/FAIRsharing.73558b + - type: schema + value: www.lido-schema.org/schema/latest/lido.xsd + - type: schema + value: www.lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: schema + value: http://www.lido-schema.org/schema/v1.0/lido-v1.0.xsd + - type: schema + value: http://lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: namespace + value: http://www.lido-schema.org + - type: homepage + value: http://www.lido-schema.org + subject_areas: + - Humanities + - Cultural heritage + title: LIDO, Lightweight Information Describing Objects + urls: + - fuji:m18 + - https://doi.org/10.25504/FAIRsharing.73558b + - www.lido-schema.org/schema/latest/lido.xsd + - www.lido-schema.org/schema/v1.1/lido-v1.1.xsd + - http://www.lido-schema.org/schema/v1.0/lido-v1.0.xsd + - http://lido-schema.org/schema/v1.1/lido-v1.1.xsd + - http://www.lido-schema.org + - http://www.lido-schema.org + - https://cidoc.mini.icom.museum/working-groups/lido/lido-overview/about-lido/what-is-lido/ +lom-higher-education-schema: + acronym: LOM + field_of_science: [] + identifier: + - type: local + value: fuji:m24 + - type: local + value: https://fairsharing.org/4664 + - type: homepage + value: http://www.imsglobal.org/metadata/index.html + - type: namespace + value: http://ltsc.ieee.org/xsd/LOMv1p0 + - type: namespace + value: http://ltsc.ieee.org/2002/09/lom-base# + - type: namespace + value: https://www.oerbw.de/hsoerlom + - type: schema + value: http://www.rdn.ac.uk/oai/lom/lom.xsd + - type: schema + value: https://w3id.org/kim/hs-oer-lom-profil/latest/schemas/hs-oer-lom.xsd + subject_areas: + title: Learning Object Metadata (LOM) + urls: + - fuji:m24 + - https://fairsharing.org/4664 + - http://www.imsglobal.org/metadata/index.html + - https://dini-ag-kim.github.io/hs-oer-lom-profil/latest/ + - https://ieeexplore.ieee.org/document/1032843 + - http://ltsc.ieee.org/xsd/LOMv1p0 + - http://ltsc.ieee.org/2002/09/lom-base# + - https://www.oerbw.de/hsoerlom + - http://www.rdn.ac.uk/oai/lom/lom.xsd + - https://w3id.org/kim/hs-oer-lom-profil/latest/schemas/hs-oer-lom.xsd +mage-tab: + acronym: + field_of_science: [] + identifier: + - type: local + value: msc:m87 + - type: local + value: https://fairsharing.org/4680 + - type: homepage + value: https://psidev.info/magetab + subject_areas: + title: MAGE-TAB + urls: + - msc:m87 + - https://fairsharing.org/4680 + - https://psidev.info/magetab +marc-machine-readable-cataloging: + acronym: MARC + field_of_science: + - humanities + - library sciences + - sciences + identifier: + - type: local + value: msc:m88 + - type: local + value: https://doi.org/10.25504/FAIRsharing.217b1b + - type: homepage + value: http://www.loc.gov/marc/ + - type: schema + value: http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - type: schema + value: https://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - type: namespace + value: http://www.loc.gov/MARC21/slim + - type: namespace + value: http://www.ddb.de/professionell/MARC21/plus + subject_areas: + - Multidisciplinary + - Bibliographic standards + - Information/library standards + title: MARC (Machine-Readable Cataloging) + urls: + - msc:m88 + - https://doi.org/10.25504/FAIRsharing.217b1b + - http://www.loc.gov/marc/ + - http://www.loc.gov/marc/bibliographic/ + - http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - https://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - http://www.loc.gov/MARC21/slim + - http://www.ddb.de/professionell/MARC21/plus + - msc:g104 + - msc:g121 +marine-community-profile: + acronym: AODN + field_of_science: + - earth and related environmental sciences + - climatology + - meteorology + - oceanography + - natural sciences + - hydrology + - glaciology + identifier: + - type: local + value: msc:m71 + - type: local + value: https://doi.org/10.25504/FAIRsharing.18b8b4 + - type: homepage + value: http://www.aodc.org.au/index.php?id=37 + - type: namespace + value: http://schemas.aodn.org.au/mcp-2.0 + - type: namespace + value: http://schemas.aodn.org.au + - type: schema + value: http://schemas.aodn.org.au/mcp-2.0/schema.xsd + subject_areas: + - Climatology + - Earth sciences + - Glaciology + - Hydrology + - Meteorology + - Oceanography + title: AODN Marine Community Profile + urls: + - msc:m71 + - https://doi.org/10.25504/FAIRsharing.18b8b4 + - https://mcp-profile-docs.readthedocs.io/en/stable/ + - http://www.aodc.org.au/index.php?id=37 + - http://schemas.aodn.org.au/mcp-2.0 + - http://schemas.aodn.org.au + - http://schemas.aodn.org.au/mcp-2.0/schema.xsd + - msc:m22 +metashare-metadata: + acronym: META-SHARE + field_of_science: + - linguistics + - humanities + identifier: + - type: local + value: fuji:m12 + - type: local + value: https://fairsharing.org/4665 + - type: homepage + value: http://www.meta-share.org/p/93/Documentation#model + - type: namespace + value: http://www.ilsp.gr/META-XMLSchema + - type: namespace + value: http://w3id.org/meta-share/meta-share/ + subject_areas: + - Humanities + - Linguistics + title: Metadata Schema for the Description of Language Resources + urls: + - fuji:m12 + - https://fairsharing.org/4665 + - http://www.meta-share.org/p/93/Documentation#model + - http://www.ilsp.gr/META-XMLSchema + - http://w3id.org/meta-share/meta-share/ +mets-metadata-encoding-and-transmission-standard: + acronym: METS + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m11 + - type: local + value: https://doi.org/10.25504/FAIRsharing.921056 + - type: namespace + value: http://www.loc.gov/METS/ + - type: schema + value: https://www.loc.gov/standards/mets/profile_docs/mets.profile.v1-2.xsd + - type: schema + value: https://www.loc.gov/standards/mets/profile_docs/mets.profile.v2-1.xsd + - type: schema + value: https://www.loc.gov/standards/mets/profile_docs/mets.profile.v2-0.xsd + - type: homepage + value: https://www.loc.gov/standards/mets/mets-profiles.html + subject_areas: + - Multidisciplinary + title: METS - Metadata Encoding and Transmission Standard + urls: + - fuji:m11 + - https://doi.org/10.25504/FAIRsharing.921056 + - http://www.loc.gov/METS/ + - https://www.loc.gov/standards/mets/profile_docs/mets.profile.v1-2.xsd + - https://www.loc.gov/standards/mets/profile_docs/mets.profile.v2-1.xsd + - https://www.loc.gov/standards/mets/profile_docs/mets.profile.v2-0.xsd + - https://www.loc.gov/standards/mets/mets-profiles.html +mibbi-minimum-information-biological-and-biomedical-investigations: + acronym: + field_of_science: + - engineering and technology + - cell metabolism + - genetics + - computer and information sciences + - proteins + - biochemistry + - environmental sciences + - natural sciences + - biological sciences + - cell biology + identifier: + - type: local + value: msc:m23 + - type: local + value: https://fairsharing.org/3518 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/mibbi-minimum-information-biological-and-biomedical-investigations + - type: homepage + value: http://mibbi.sourceforge.net/portal.shtml + subject_areas: + - Biochemistry + - Biology + - Biotechnology + - Cell biology + - Computer applications + - Environmental sciences + - Genetics + - Metabolism + - Proteins + title: MIBBI (Minimum Information for Biological and Biomedical Investigations) + urls: + - msc:m23 + - https://fairsharing.org/3518 + - http://www.dcc.ac.uk/resources/metadata-standards/mibbi-minimum-information-biological-and-biomedical-investigations + - http://mibbi.sourceforge.net/foundry.shtml + - http://mibbi.sourceforge.net/portal.shtml + - msc:g12 + - msc:g15 + - msc:g43 + - msc:g58 + - msc:g76 + - msc:g82 +midas-heritage: + acronym: MIDAS + field_of_science: + - architectural design + - archaeology + - history + - humanities + identifier: + - type: local + value: msc:m24 + - type: local + value: https://doi.org/10.25504/FAIRsharing.q0hgq + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/midas-heritage + - type: homepage + value: http://www.english-heritage.org.uk/publications/midas-heritage/ + - type: namespace + value: http://www.heritage-standards.org/midas/schema/1.0 + subject_areas: + - Archaeology + - Architecture + - Cultural heritage + - Cultural property preservation + - History + title: MIDAS-Heritage + urls: + - msc:m24 + - https://doi.org/10.25504/FAIRsharing.q0hgq + - http://www.dcc.ac.uk/resources/metadata-standards/midas-heritage + - http://www.english-heritage.org.uk/content/publications/publicationsNew/guidelines-standards/midas-heritage/midas-heritage-2012-v1_1.pdf + - https://historicengland.org.uk/images-books/publications/midas-heritage/ + - http://www.english-heritage.org.uk/publications/midas-heritage/ + - http://www.heritage-standards.org/midas/schema/1.0 + - msc:g38 +mods-metadata-object-description-schema: + acronym: MODS + field_of_science: + - humanities + - library sciences + identifier: + - type: local + value: msc:m97 + - type: local + value: https://doi.org/10.25504/FAIRsharing.o67X7e + - type: homepage + value: http://www.loc.gov/standards/mods/ + - type: namespace + value: http://www.loc.gov/mods/v3 + - type: namespace + value: http://www.loc.gov/mods/ + subject_areas: + - Bibliographic standards + - Information/library standards + title: MODS (Metadata Object Description Schema) + urls: + - msc:m97 + - https://doi.org/10.25504/FAIRsharing.o67X7e + - http://www.loc.gov/standards/mods/ + - http://www.loc.gov/mods/v3 + - http://www.loc.gov/mods/ + - msc:m88 + - msc:g104 + - msc:g121 + - http://www.loc.gov/standards/mods/v3/mods-3-3.xsd + - http://www.loc.gov/standards/mods/mods-outline-3-4.html + - http://www.loc.gov/standards/mods/v3/mods-3-4.xsd + - http://www.loc.gov/standards/mods/mods-outline-3-5.html + - http://www.loc.gov/standards/mods/v3/mods-3-5.xsd + - http://www.loc.gov/standards/mods/mods-outline-3-6.html + - http://www.loc.gov/standards/mods/v3/mods-3-6.xsd + - http://www.loc.gov/standards/mods/mods-outline-3-7.html + - http://www.loc.gov/standards/mods/v3/mods-3-7.xsd +museumdat-schema: + acronym: museumdat + field_of_science: + - humanities + identifier: + - type: local + value: fuji:m31 + - type: local + value: https://fairsharing.org/4671 + - type: schema + value: http://museum.zib.de/museumdat/museumdat-v1.0.xsd + - type: homepage + value: http://museum.zib.de/museumdat/ + subject_areas: + - Humanities + - Cultural heritage + title: museumdat + urls: + - fuji:m31 + - https://fairsharing.org/4671 + - http://museum.zib.de/museumdat/museumdat-v1.0.xsd + - http://museum.zib.de/museumdat/ +netcdf-attribute-convention-for-dataset-discovery: + acronym: + field_of_science: [] + identifier: + - type: local + value: msc:m89 + - type: homepage + value: https://wiki.esipfed.org/Category:Attribute_Conventions_Dataset_Discovery + subject_areas: + title: NetCDF Attribute Convention for Dataset Discovery + urls: + - msc:m89 + - https://wiki.esipfed.org/Category:Attribute_Conventions_Dataset_Discovery +nexml: + acronym: + field_of_science: + - biological sciences + - natural sciences + identifier: + - type: local + value: fuji:m45 + - type: local + value: https://doi.org/10.25504/FAIRsharing.knrb06 + - type: homepage + value: http://www.nexusformat.org/ + - type: namespace + value: http://www.nexml.org/2009 + - type: schema + value: http://www.nexml.org/2009 ../xsd/nexml.xsd + subject_areas: + - Biology + title: NeXML + urls: + - fuji:m45 + - https://doi.org/10.25504/FAIRsharing.knrb06 + - http://download.nexusformat.org/doc/html/ref_doc.html + - http://www.nexusformat.org/ + - http://www.nexml.org/2009 + - http://www.nexml.org/2009 ../xsd/nexml.xsd +nexus: + acronym: + field_of_science: + - chemical sciences + - engineering and technology + - crystallography + - materials engineering + - natural sciences + identifier: + - type: local + value: msc:m25 + - type: local + value: https://doi.org/10.25504/FAIRsharing.eq2pdx + - type: homepage + value: http://www.nexusformat.org/ + subject_areas: + - Chemistry + - Crystallography + - Materials engineering + title: NeXus + urls: + - msc:m25 + - https://doi.org/10.25504/FAIRsharing.eq2pdx + - http://download.nexusformat.org/doc/html/ref_doc.html + - http://www.nexusformat.org/ + - msc:g110 +oai-dublin-core-schema: + acronym: oai_dc + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m44 + - type: local + value: https://doi.org/10.25504/FAIRsharing.0417cf + - type: namespace + value: https://resources.bepress.com/OAI/2.0/qualified-dublin-core/ + - type: schema + value: http://www.openarchives.org/OAI/2.0/oai_dc.xsd + - type: namespace + value: http://www.openarchives.org/OAI/2.0/oai_dc/ + - type: namespace + value: http://www.openarchives.org/OAI/2.0/oai_dc + - type: homepage + value: http://www.openarchives.org/OAI/openarchivesprotocol.html#dublincore + subject_areas: + - Multidisciplinary + title: Open Archive Initiative Dublin Core (OAI DC) + urls: + - fuji:m44 + - https://doi.org/10.25504/FAIRsharing.0417cf + - https://resources.bepress.com/OAI/2.0/qualified-dublin-core/ + - http://www.openarchives.org/OAI/2.0/oai_dc.xsd + - http://www.openarchives.org/OAI/2.0/oai_dc/ + - http://www.openarchives.org/OAI/2.0/oai_dc + - http://www.openarchives.org/OAI/openarchivesprotocol.html#dublincore +oai-ore-open-archives-initiative-object-reuse-and-exchange: + acronym: OAI-ORE + field_of_science: + - history + - humanities + - social sciences + - anthropology + - sciences + identifier: + - type: local + value: msc:m26 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3mtaee + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/oai-ore-open-archives-initiative-object-reuse-and-exchange + - type: homepage + value: http://www.openarchives.org/ore/toc + - type: namespace + value: http://www.openarchives.org/ore/terms/ + subject_areas: + - Anthropology + - History + - Multidisciplinary + title: OAI-ORE (Open Archives Initiative Object Reuse and Exchange) + urls: + - msc:m26 + - https://doi.org/10.25504/FAIRsharing.3mtaee + - http://www.dcc.ac.uk/resources/metadata-standards/oai-ore-open-archives-initiative-object-reuse-and-exchange + - http://www.openarchives.org/ore/ + - http://www.openarchives.org/ore/toc + - http://www.openarchives.org/ore/terms/ + - msc:g81 +oai-rdf-schema: + acronym: oai-rdf + field_of_science: [] + identifier: + - type: local + value: fuji:m38 + - type: schema + value: http://www.openarchives.org/OAI/2.0/rdf.xsd + - type: namespace + value: http://www.openarchives.org/OAI/2.0/rdf/ + - type: namespace + value: https://api.aiscr.cz/schema/oai_rdf/ + - type: homepage + value: http://www.openarchives.org/OAI/2.0/rdf/ + subject_areas: + title: OAI-RDF Schema + urls: + - fuji:m38 + - http://www.openarchives.org/OAI/2.0/rdf.xsd + - http://www.openarchives.org/OAI/2.0/rdf/ + - https://api.aiscr.cz/schema/oai_rdf/ + - http://www.openarchives.org/OAI/2.0/rdf/ +observ-om: + acronym: + field_of_science: + - biological sciences + - natural sciences + identifier: + - type: local + value: msc:m27 + - type: local + value: https://fairsharing.org/4682 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/observ-om + - type: homepage + value: http://www.molgenis.org/wiki/ObservStart + subject_areas: + - Biology + title: Observ-OM + urls: + - msc:m27 + - https://fairsharing.org/4682 + - http://www.dcc.ac.uk/resources/metadata-standards/observ-om + - http://www.molgenis.org/wiki/ObservStart + - msc:g21 + - msc:g57 + - msc:g70 + - msc:g96 + - msc:g97 +observations-and-measurements: + acronym: + field_of_science: + - remote sensing + - chemical sciences + - engineering and technology + - meteorology + - natural sciences + - geology + identifier: + - type: local + value: msc:m28 + - type: local + value: https://doi.org/10.25504/FAIRsharing.4ehmy9 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/observations-and-measurements + - type: homepage + value: http://www.opengeospatial.org/standards/om + - type: namespace + value: http://schemas.opengis.net/om/2.0/ + - type: schema + value: https://schemas.opengis.net/om/2.0/observation.xsd + - type: schema + value: https://schemas.opengis.net/om/1.0.0/observation.xsd + - type: namespace + value: http://www.opengis.net/om/1.0 + subject_areas: + - Chemistry + - Geology + - Meteorology + - Remote sensing + title: Observations and Measurements + urls: + - msc:m28 + - https://doi.org/10.25504/FAIRsharing.4ehmy9 + - http://www.dcc.ac.uk/resources/metadata-standards/observations-and-measurements + - http://portal.opengeospatial.org/files/?artifact_id=41579 + - http://www.opengeospatial.org/standards/om + - http://schemas.opengis.net/om/2.0/ + - https://schemas.opengis.net/om/2.0/observation.xsd + - https://schemas.opengis.net/om/1.0.0/observation.xsd + - http://www.opengis.net/om/1.0 + - msc:g54 + - msc:g79 + - msc:g103 +odam-datapackage: + acronym: + field_of_science: [] + identifier: + - type: local + value: 10.25504/FAIRsharing.ld9wne + - type: homepage + value: + subject_areas: + - biochemistry + - molecular-biology + - metabolic-biochemistry + - biomaterials + - bioengineering + title: ODAM Structural Metadata + urls: + - 10.25504/FAIRsharing.ld9wne + - https://inrae.github.io/ODAM/data-preparation/url +olac-metadata: + acronym: OLAC + field_of_science: + - linguistics + - humanities + identifier: + - type: local + value: fuji:m14 + - type: local + value: https://doi.org/10.25504/FAIRsharing.17fbae + - type: namespace + value: http://www.language-archives.org/OLAC/1.1/ + - type: schema + value: http://www.language-archives.org/OLAC/1.1/olac.xsd + - type: homepage + value: http://www.language-archives.org/OLAC + subject_areas: + - Humanities + - Linguistics + title: OLAC metadata + urls: + - fuji:m14 + - https://doi.org/10.25504/FAIRsharing.17fbae + - http://www.language-archives.org/OLAC/1.1/ + - http://www.language-archives.org/OLAC/1.1/olac.xsd + - http://www.language-archives.org/OLAC +ome-tiff-open-microscopy-environment-tiff: + acronym: + field_of_science: + - plant protection + - veterinary sciences + - physiology + - zoology + - medical and health sciences + - natural sciences + - botany + - cell biology + - agricultural sciences + identifier: + - type: local + value: msc:m73 + - type: local + value: https://doi.org/10.25504/FAIRsharing.cq8tg2 + - type: homepage + value: http://www.openmicroscopy.org/site/support/file-formats/ome-tiff + subject_areas: + - Animal diseases + - Cell biology + - Physiology + - Plant diseases + - Plant physiology + - Zoology + title: OME-TIFF (Open Microscopy Environment TIFF) + urls: + - msc:m73 + - https://doi.org/10.25504/FAIRsharing.cq8tg2 + - http://www.openmicroscopy.org/site/support/file-formats/ome-tiff + - msc:m29 +ome-xml-open-microscopy-environment-xml: + acronym: + field_of_science: + - plant protection + - veterinary sciences + - physiology + - zoology + - medical and health sciences + - natural sciences + - botany + - cell biology + - agricultural sciences + identifier: + - type: local + value: msc:m29 + - type: local + value: https://doi.org/10.25504/FAIRsharing.zk8p4g + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ome-xml-open-microscopy-environment-xml + - type: homepage + value: http://www.openmicroscopy.org/site/support/file-formats + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2016-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2015-01 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2013-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2012-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2011-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2010-04 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2010-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2009-09 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2008-09 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2008-02 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2007-06 + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2015-01/ome.xsd + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2013-06/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2012-06/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2011-06/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2010-04/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2010-06/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2009-09/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2008-09/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2008-02/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2007-06/index.html + subject_areas: + - Animal diseases + - Cell biology + - Physiology + - Plant diseases + - Plant physiology + - Zoology + title: OME-XML (Open Microscopy Environment XML) + urls: + - msc:m29 + - https://doi.org/10.25504/FAIRsharing.zk8p4g + - http://www.dcc.ac.uk/resources/metadata-standards/ome-xml-open-microscopy-environment-xml + - http://www.openmicroscopy.org/Schemas/ + - http://www.openmicroscopy.org/site/support/file-formats + - http://www.openmicroscopy.org/Schemas/OME/2016-06 + - http://www.openmicroscopy.org/Schemas/OME/2015-01 + - http://www.openmicroscopy.org/Schemas/OME/2013-06 + - http://www.openmicroscopy.org/Schemas/OME/2012-06 + - http://www.openmicroscopy.org/Schemas/OME/2011-06 + - http://www.openmicroscopy.org/Schemas/OME/2010-04 + - http://www.openmicroscopy.org/Schemas/OME/2010-06 + - http://www.openmicroscopy.org/Schemas/OME/2009-09 + - http://www.openmicroscopy.org/Schemas/OME/2008-09 + - http://www.openmicroscopy.org/Schemas/OME/2008-02 + - http://www.openmicroscopy.org/Schemas/OME/2007-06 + - http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd + - http://www.openmicroscopy.org/Schemas/OME/2015-01/ome.xsd + - http://www.openmicroscopy.org/Schemas/OME/2013-06/index.html + - http://www.openmicroscopy.org/Schemas/OME/2012-06/index.html + - http://www.openmicroscopy.org/Schemas/OME/2011-06/index.html + - http://www.openmicroscopy.org/Schemas/OME/2010-04/index.html + - http://www.openmicroscopy.org/Schemas/OME/2010-06/index.html + - http://www.openmicroscopy.org/Schemas/OME/2009-09/index.html + - http://www.openmicroscopy.org/Schemas/OME/2008-09/index.html + - http://www.openmicroscopy.org/Schemas/OME/2008-02/index.html + - http://www.openmicroscopy.org/Schemas/OME/2007-06/index.html + - msc:g17 + - msc:g62 +onix-metadata-schema: + acronym: onix + field_of_science: + - humanities + - library sciences + identifier: + - type: local + value: fuji:m42 + - type: local + value: https://fairsharing.org/4683 + - type: homepage + value: https://www.editeur.org/8/ONIX/ + - type: namespace + value: http://www.editeur.org/onix/2.1/short + - type: schema + value: http://www.editeur.org/onix/2.1/short/ONIX_BookProduct_Release2.1_short + subject_areas: + - Bibliographic standards + - Information/library standards + title: ONIX for Books Product Information Message + urls: + - fuji:m42 + - https://fairsharing.org/4683 + - https://www.editeur.org/8/ONIX/ + - https://www.editeur.org/files/ONIX%203/APPNOTE%20Describing%20e-books%20in%20ONIX.pdf + - http://www.editeur.org/onix/2.1/short + - http://www.editeur.org/onix/2.1/short/ONIX_BookProduct_Release2.1_short +openaire-guidelines: + acronym: OpenAIRE_G + field_of_science: + - sciences + identifier: + - type: local + value: msc:m92 + - type: local + value: https://doi.org/10.25504/FAIRsharing.123197 + - type: homepage + value: https://guidelines.openaire.eu/ + - type: schema + value: https://www.openaire.eu/schema/repo-lit/4.0/openaire.xsd + - type: namespace + value: http://namespace.openaire.eu/schema/oaire/ + - type: namespace + value: oai_openaire + - type: namespace + value: https://openaire.eu + subject_areas: + - Multidisciplinary + title: OpenAIRE Guidelines + urls: + - msc:m92 + - https://doi.org/10.25504/FAIRsharing.123197 + - https://guidelines.openaire.eu/ + - https://www.openaire.eu/schema/repo-lit/4.0/openaire.xsd + - http://namespace.openaire.eu/schema/oaire/ + - oai_openaire + - https://openaire.eu + - msc:g112 + - msc:m4 + - msc:m11 + - msc:m15 +openaire-research-graph: + acronym: OpenAIRE_RG + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m20 + - type: local + value: https://fairsharing.org/4684 + - type: namespace + value: http://namespace.openaire.eu/oaf + - type: schema + value: https://www.openaire.eu/schema/1.0/oaf-1.0.xsd + - type: homepage + value: https://graph.openaire.eu/ + subject_areas: + - Multidisciplinary + title: OpenAIRE Research Graph + urls: + - fuji:m20 + - https://fairsharing.org/4684 + - http://namespace.openaire.eu/oaf + - https://www.openaire.eu/schema/latest/doc/oaf.html + - https://www.openaire.eu/schema/1.0/oaf-1.0.xsd + - https://graph.openaire.eu/ +opengraph: + acronym: OpenGraph + field_of_science: [] + identifier: + - type: local + value: fuji:m46 + - type: homepage + value: hhttps://ogp.me + - type: namespace + value: https://ogp.me/ns# + subject_areas: + title: The Open Graph protocol metadata format + urls: + - fuji:m46 + - hhttps://ogp.me + - https://ogp.me/ns# +opensearch: + acronym: + field_of_science: [] + identifier: + - type: local + value: fuji:m2 + - type: local + value: https://fairsharing.org/4685 + - type: namespace + value: http://a9.com/-/spec/opensearch/1.1/ + - type: homepage + value: https://github.com/dewitt/opensearch + subject_areas: + title: OpenSearch + urls: + - fuji:m2 + - https://fairsharing.org/4685 + - http://a9.com/-/spec/opensearch/1.1/ + - https://github.com/dewitt/opensearch +openurl-contextobject: + acronym: CTX + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m7 + - type: local + value: https://fairsharing.org/4686 + - type: namespace + value: info:ofi/fmt:xml:xsd:ctx + - type: namespace + value: info:ofi/fmt:kev:mtx:ctx + - type: homepage + value: https://www.oclc.org/research/activities/registry.html + subject_areas: + - Multidisciplinary + title: The OpenURL ContextObject Format + urls: + - fuji:m7 + - https://fairsharing.org/4686 + - info:ofi/fmt:xml:xsd:ctx + - info:ofi/fmt:kev:mtx:ctx + - https://groups.niso.org/apps/group_public/download.php/14833/z39_88_2004_r2010.pdf + - https://www.oclc.org/research/activities/registry.html +pdbx-mmcif: + acronym: + field_of_science: + - chemical sciences + - computer and information sciences + - crystallography + - natural sciences + - physical sciences + - biological sciences + - molecular biology + identifier: + - type: local + value: msc:m30 + - type: local + value: https://doi.org/10.25504/FAIRsharing.fd28en + - type: homepage + value: http://mmcif.wwpdb.org/ + subject_areas: + - Biology + - Chemistry + - Computer applications + - Crystallography + - Molecular biology + - Physics + title: PDBx/mmCIF (Protein Data Bank Exchange Dictionary and the Macromolecular Crystallographic Information Framework) + urls: + - msc:m30 + - https://doi.org/10.25504/FAIRsharing.fd28en + - http://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v40.dic/Index/ + - http://mmcif.wwpdb.org/ + - msc:g22 + - msc:g98 + - msc:g98 +pica-metadata-schema: + acronym: pica + field_of_science: [] + identifier: + - type: local + value: fuji:m37 + - type: local + value: https://fairsharing.org/4688 + - type: namespace + value: info:srw/schema/5/picaXML-v1.0 + - type: namespace + value: http://www.oclcpica.org/xmlns/ppxml-1.0 + - type: schema + value: http://www.oclcpica.org/xml/picaplus.xsd + - type: homepage + value: http://www.oclcpica.org + subject_areas: + title: OCLC PICA XML + urls: + - fuji:m37 + - https://fairsharing.org/4688 + - info:srw/schema/5/picaXML-v1.0 + - http://www.oclcpica.org/xmlns/ppxml-1.0 + - http://www.oclcpica.org/xml/picaplus.xsd + - http://www.oclcpica.org +premis: + acronym: premis + field_of_science: + - sciences + identifier: + - type: local + value: msc:m31 + - type: local + value: https://doi.org/10.25504/FAIRsharing.27a0f4 + - type: homepage + value: http://www.loc.gov/standards/premis/ + - type: namespace + value: http://www.loc.gov/standards/premis + - type: schema + value: https://www.loc.gov/standards/premis/v3/premis-v3-0.xsd + - type: namespace + value: http://www.loc.gov/premis/v3 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-2.xsd + - type: namespace + value: info:lc/xmlns/premis-v2 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-3.xsd + - type: schema + value: https://www.loc.gov/standards/premis/v1/PREMIS-v1-1.xsd + - type: namespace + value: http://www.loc.gov/standards/premis/v1 + subject_areas: + - Multidisciplinary + title: PREMIS + urls: + - msc:m31 + - https://doi.org/10.25504/FAIRsharing.27a0f4 + - http://www.loc.gov/standards/premis/v3/premis-3-0-final.pdf + - http://www.loc.gov/standards/premis/ + - http://www.loc.gov/standards/premis + - https://www.loc.gov/standards/premis/v3/premis-v3-0.xsd + - http://www.loc.gov/premis/v3 + - https://www.loc.gov/standards/premis/v2/premis-v2-2.xsd + - info:lc/xmlns/premis-v2 + - https://www.loc.gov/standards/premis/v2/premis-v2-3.xsd + - https://www.loc.gov/standards/premis/v1/PREMIS-v1-1.xsd + - http://www.loc.gov/standards/premis/v1 + - msc:g104 + - msc:g111 +prism-publishing-industry-standard-metadata: + acronym: PRISM + field_of_science: [] + identifier: + - type: local + value: fuji:m27 + - type: local + value: https://fairsharing.org/4689 + - type: homepage + value: https://www.w3.org/Submission/prism + - type: namespace + value: http://prismstandard.org/namespaces/pam/0.0/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/1.2/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/2.0/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/2.1/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/3.0/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/1.2/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/2.0/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/1.0/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/2.1/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/3.0/ + - type: namespace + value: http://prismstandard.org/namespaces/pim/1.2/ + subject_areas: + title: PRISM Publishing Requirements for Industry Standard Metadata + urls: + - fuji:m27 + - https://fairsharing.org/4689 + - https://www.w3.org/Submission/prism + - http://prismstandard.org/namespaces/pam/0.0/ + - http://prismstandard.org/namespaces/pam/1.2/ + - http://prismstandard.org/namespaces/pam/2.0/ + - http://prismstandard.org/namespaces/pam/2.1/ + - http://prismstandard.org/namespaces/pam/3.0/ + - http://prismstandard.org/namespaces/basic/1.2/ + - http://prismstandard.org/namespaces/basic/2.0/ + - http://prismstandard.org/namespaces/basic/1.0/ + - http://prismstandard.org/namespaces/basic/2.1/ + - http://prismstandard.org/namespaces/basic/3.0/ + - http://prismstandard.org/namespaces/pim/1.2/ +protocol-data-element-definitions: + acronym: + field_of_science: + - clinical medicine + - medical and health sciences + identifier: + - type: local + value: msc:m32 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/protocol-data-element-definitions + - type: local + value: https://doi.org/10.25504/FAIRsharing.7e962d + - type: homepage + value: http://clinicaltrials.gov/ct2/manage-recs/resources + - type: schema + value: https://prsinfo.clinicaltrials.gov/ProtocolRecordSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/prs + - type: schema + value: https://prsinfo.clinicaltrials.gov/RRSUploadSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/rrs + subject_areas: + - Clinical medicine + title: Protocol Data Element Definitions + urls: + - msc:m32 + - http://www.dcc.ac.uk/resources/metadata-standards/protocol-data-element-definitions + - https://doi.org/10.25504/FAIRsharing.7e962d + - http://prsinfo.clinicaltrials.gov/definitions.html + - http://clinicaltrials.gov/ct2/manage-recs/resources + - https://prsinfo.clinicaltrials.gov/ProtocolRecordSchema.xsd + - http://clinicaltrials.gov/prs + - https://prsinfo.clinicaltrials.gov/RRSUploadSchema.xsd + - http://clinicaltrials.gov/rrs + - msc:g105 +prov: + acronym: + field_of_science: + - sciences + identifier: + - type: local + value: msc:m33 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/prov + - type: local + value: https://doi.org/10.25504/FAIRsharing.fe7cda + - type: homepage + value: http://www.w3.org/2001/sw/wiki/PROV + - type: schema + value: http://www.w3.org/ns/prov.xsd + - type: namespace + value: http://www.w3.org/ns/prov# + subject_areas: + - Multidisciplinary + title: PROV + urls: + - msc:m33 + - http://www.dcc.ac.uk/resources/metadata-standards/prov + - https://doi.org/10.25504/FAIRsharing.fe7cda + - http://www.w3.org/TR/prov-overview/ + - http://www.w3.org/2001/sw/wiki/PROV + - http://www.w3.org/ns/prov.xsd + - http://www.w3.org/ns/prov# + - msc:g84 + - msc:g106 +quakeml: + acronym: QuakeML + field_of_science: + - geophysics + - earth and related environmental sciences + - natural sciences + identifier: + - type: local + value: fuji:m9 + - type: local + value: https://fairsharing.org/1444 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/2.0 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.2 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.1 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.0.1 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.0 + - type: homepage + value: https://quake.ethz.ch/quakeml + subject_areas: + - Earth sciences + - Geophysics + title: QuakeML + urls: + - fuji:m9 + - https://fairsharing.org/1444 + - http://quakeml.org/xmlns/quakeml/2.0 + - http://quakeml.org/xmlns/quakeml/1.2 + - http://quakeml.org/xmlns/quakeml/1.1 + - http://quakeml.org/xmlns/quakeml/1.0.1 + - http://quakeml.org/xmlns/quakeml/1.0 + - https://quake.ethz.ch/quakeml + - http://www.quakeml.org/ +qudex-qualitative-data-exchange-format: + acronym: + field_of_science: + - sciences + identifier: + - type: local + value: msc:m34 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/qudex-qualitative-data-exchange-format + - type: local + value: https://doi.org/10.25504/FAIRsharing.d42cb9 + - type: homepage + value: http://www.data-archive.ac.uk/create-manage/projects/qudex?index=1 + - type: schema + value: https://dam.data-archive.ac.uk/standards/qudex_v03_01.xsd + - type: namespace + value: http://www.data-archive.ac.uk/dext/schema/draft + subject_areas: + - Multidisciplinary + title: QuDEx (Qualitative Data Exchange Format) + urls: + - msc:m34 + - http://www.dcc.ac.uk/resources/metadata-standards/qudex-qualitative-data-exchange-format + - https://doi.org/10.25504/FAIRsharing.d42cb9 + - http://data-archive.ac.uk/create-manage/projects/qudex?index=1 + - http://www.data-archive.ac.uk/create-manage/projects/qudex?index=1 + - https://dam.data-archive.ac.uk/standards/qudex_v03_01.xsd + - http://www.data-archive.ac.uk/dext/schema/draft + - msc:g91 +rdf-data-cube-vocabulary: + acronym: + field_of_science: + - statistics and probability + - natural sciences + identifier: + - type: local + value: msc:m35 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/rdf-data-cube-vocabulary + - type: local + value: https://doi.org/10.25504/FAIRsharing.c3b573 + - type: homepage + value: http://www.w3.org/TR/vocab-data-cube/ + - type: namespace + value: http://purl.org/linked-data/cube# + subject_areas: + - Statistics + title: RDF Data Cube Vocabulary + urls: + - msc:m35 + - http://www.dcc.ac.uk/resources/metadata-standards/rdf-data-cube-vocabulary + - https://doi.org/10.25504/FAIRsharing.c3b573 + - http://www.w3.org/TR/vocab-data-cube/ + - http://purl.org/linked-data/cube# + - msc:g65 + - msc:g106 + - msc:g107 +resource-metadata-virtual-observatory: + acronym: + field_of_science: + - astronomy + - natural sciences + identifier: + - type: local + value: msc:m74 + - type: local + value: https://doi.org/10.25504/FAIRsharing.qSULus + - type: homepage + value: http://www.ivoa.net/documents/latest/RM.html + subject_areas: + - Astronomy + title: Resource Metadata for the Virtual Observatory + urls: + - msc:m74 + - https://doi.org/10.25504/FAIRsharing.qSULus + - http://www.ivoa.net/documents/latest/RM.html + - msc:m15 + - msc:m20 +rif-cs-registry-interchange-format-collections-and-services: + acronym: RIF-CS + field_of_science: + - sciences + identifier: + - type: local + value: msc:m98 + - type: local + value: https://doi.org/10.25504/FAIRsharing.reybx2 + - type: homepage + value: https://www.ands.org.au/online-services/rif-cs-schema + - type: schema + value: http://services.ands.org.au/documentation/rifcs/schema/registryObjects.xsd + - type: namespace + value: http://ands.org.au/standards/rif-cs/registryObjects + - type: namespace + value: https://ands.org.au/standards/rif-cs/registryObjects + subject_areas: + - Multidisciplinary + title: RIF-CS (Registry Interchange Format Ć¢ā‚¬ā€œ Collections and Services) + urls: + - msc:m98 + - https://doi.org/10.25504/FAIRsharing.reybx2 + - https://www.ands.org.au/online-services/rif-cs-schema + - http://services.ands.org.au/documentation/rifcs/schemadocs/registryObjects.html + - http://services.ands.org.au/documentation/rifcs/schema/registryObjects.xsd + - http://ands.org.au/standards/rif-cs/registryObjects + - https://ands.org.au/standards/rif-cs/registryObjects + - msc:g118 +rioxx-metadata-application-profile: + acronym: rioxx + field_of_science: + - sciences + identifier: + - type: local + value: fuji:m5 + - type: local + value: https://fairsharing.org/4690 + - type: namespace + value: http://www.rioxx.net/schema/v2.0/rioxx/ + - type: homepage + value: https://www.rioxx.net/ + - type: namespace + value: https://www.rioxx.net/schema/v2.0/rioxxterms/ + - type: namespace + value: http://docs.rioxx.net/schema/v1.0/ + subject_areas: + - Multidisciplinary + title: RIOXX Metadata Application Profile + urls: + - fuji:m5 + - https://fairsharing.org/4690 + - http://www.rioxx.net/schema/v2.0/rioxx/ + - https://www.rioxx.net/ + - https://www.rioxx.net/schema/v2.0/rioxxterms/ + - http://docs.rioxx.net/schema/v1.0/ +ro-crate: + acronym: + field_of_science: + - sciences + identifier: + - type: local + value: https://doi.org/10.25504/FAIRsharing.wUoZKE + - type: local + value: msc:m102 + - type: homepage + value: https://w3id.org/ro/crate + - type: namespace + value: https://w3id.org/ro/crate/1.1/context + - type: namespace + value: https://w3id.org/ro/crate/1.0/context + - type: namespace + value: https://w3id.org/ro/crate/0.2/context + subject_areas: + - Multidisciplinary + title: RO-Crate + urls: + - https://doi.org/10.25504/FAIRsharing.wUoZKE + - msc:m102 + - https://w3id.org/ro/crate/1.1 + - https://w3id.org/ro/crate + - https://w3id.org/ro/crate/1.1/context + - https://w3id.org/ro/crate/1.0/context + - https://w3id.org/ro/crate/0.2/context +schemaorg: + acronym: schemaorg + field_of_science: + - sciences + identifier: + - type: local + value: https://doi.org/10.25504/FAIRsharing.hzdzq8 + - type: local + value: msc:m101 + - type: namespace + value: https://schema.org + - type: namespace + value: http://schema.org + - type: homepage + value: https://schema.org/docs/schemas.html + subject_areas: + - Multidisciplinary + title: Schema.org + urls: + - https://doi.org/10.25504/FAIRsharing.hzdzq8 + - msc:m101 + - https://schema.org + - http://schema.org + - https://schema.org/docs/documents.html + - https://schema.org/docs/schemas.html +scholix-metadata-schema: + acronym: scholix + field_of_science: [] + identifier: + - type: local + value: fuji:m28 + - type: local + value: https://doi.org/10.25504/FAIRsharing.B0d5Kn + - type: homepage + value: http://www.scholix.org/schema + - type: namespace + value: http://www.scholix.org + - type: schema + value: https://github.com/scholix/schema/blob/master/xsd/v3/schema.xsd + - type: schema + value: https://github.com/scholix/schema/blob/master/xsd/v1/scholix.xsd + subject_areas: + title: + urls: + - fuji:m28 + - https://doi.org/10.25504/FAIRsharing.B0d5Kn + - http://www.scholix.org/schema + - http://www.scholix.org + - https://github.com/scholix/schema/blob/master/xsd/v3/schema.xsd + - https://github.com/scholix/schema/blob/master/xsd/v1/scholix.xsd +sdac: + acronym: + field_of_science: + - astronomy + - astrophysics + - natural sciences + identifier: + - type: local + value: msc:m37 + - type: local + value: https://doi.org/10.25504/FAIRsharing.zcjkc7 + - type: homepage + value: http://cds.u-strasbg.fr/doc/catstd.htx + subject_areas: + - Astronomy + - Astrophysics + title: SDAC (Standard for Documentation of Astronomical Catalogues) + urls: + - msc:m37 + - https://doi.org/10.25504/FAIRsharing.zcjkc7 + - http://cds.u-strasbg.fr/doc/catstd.pdf + - http://cds.u-strasbg.fr/doc/catstd.htx + - msc:g16 + - msc:g16 +sdmx-statistical-data-and-metadata-exchange: + acronym: + field_of_science: + - statistics and probability + - economics + - social geography + - social sciences + - demography + - natural sciences + - political sciences + identifier: + - type: local + value: msc:m38 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/sdmx-statistical-data-and-metadata-exchange + - type: local + value: https://doi.org/10.25504/FAIRsharing.cea9zc + - type: homepage + value: http://sdmx.org + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/common + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/registry + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/structure + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/message + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/data + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/ + subject_areas: + - Demography + - Economics + - Human geography + - Social policy + - Statistics + title: SDMX (Statistical Data and Metadata Exchange) + urls: + - msc:m38 + - http://www.dcc.ac.uk/resources/metadata-standards/sdmx-statistical-data-and-metadata-exchange + - https://doi.org/10.25504/FAIRsharing.cea9zc + - http://sdmx.org/?page_id=5008 + - http://sdmx.org + - http://www.sdmx.org/resources/sdmxml/schemas/v3_0/common + - http://www.sdmx.org/resources/sdmxml/schemas/v3_0/registry + - http://www.sdmx.org/resources/sdmxml/schemas/v3_0/structure + - http://www.sdmx.org/resources/sdmxml/schemas/v3_0/message + - http://www.sdmx.org/resources/sdmxml/schemas/v3_0/data + - http://www.sdmx.org/resources/sdmxml/ + - msc:g42 + - msc:g86 +shoreline-metadata-profile: + acronym: + field_of_science: + - hydrology + - oceanography + - natural sciences + identifier: + - type: local + value: msc:m75 + - type: local + value: https://doi.org/10.25504/FAIRsharing.22041b + - type: homepage + value: http://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/shoreline-metadata/ + subject_areas: + - Hydrology + - Oceanography + title: Shoreline Metadata Profile + urls: + - msc:m75 + - https://doi.org/10.25504/FAIRsharing.22041b + - http://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/shoreline-metadata/ + - msc:m17 +snrnasm-isa-tab: + acronym: + field_of_science: + - cell biology + - biochemistry + - natural sciences + identifier: + - type: local + value: msc:m76 + - type: homepage + value: http://snrnasm.bio.unc.edu + subject_areas: + - Biochemistry + - Cell biology + title: SNRNASM ISA-Tab + urls: + - msc:m76 + - http://snrnasm.bio.unc.edu + - msc:m21 +spase-data-model: + acronym: + field_of_science: + - astronomy + - natural sciences + identifier: + - type: local + value: msc:m39 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/spase-data-model + - type: local + value: https://doi.org/10.25504/FAIRsharing.f5d440 + - type: homepage + value: http://www.spase-group.org/data/ + - type: namespace + value: http://www.spase-group.org/data/schema + - type: schema + value: https://spase-group.org/data/schema/spase-1.0.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.1.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.2.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.2.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.2.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.3.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.0.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.1.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.3.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.4.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.6.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.8.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.9.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.5.0.xsd + subject_areas: + - Astronomical systems + - Astronomy + - Sun + title: SPASE Data Model + urls: + - msc:m39 + - http://www.dcc.ac.uk/resources/metadata-standards/spase-data-model + - https://doi.org/10.25504/FAIRsharing.f5d440 + - http://www.spase-group.org/docs/schema/ + - http://www.spase-group.org/data/ + - http://www.spase-group.org/data/schema + - https://spase-group.org/data/schema/spase-1.0.0.xsd + - https://spase-group.org/data/schema/spase-1.1.0.xsd + - https://spase-group.org/data/schema/spase-1.2.0.xsd + - https://spase-group.org/data/schema/spase-1.2.1.xsd + - https://spase-group.org/data/schema/spase-1.2.2.xsd + - https://spase-group.org/data/schema/spase-1.3.0.xsd + - https://spase-group.org/data/schema/spase-2.0.0.xsd + - https://spase-group.org/data/schema/spase-2.1.0.xsd + - https://spase-group.org/data/schema/spase-2.2.0.xsd + - https://spase-group.org/data/schema/spase-2.2.1.xsd + - https://spase-group.org/data/schema/spase-2.2.2.xsd + - https://spase-group.org/data/schema/spase-2.2.3.xsd + - https://spase-group.org/data/schema/spase-2.2.4.xsd + - https://spase-group.org/data/schema/spase-2.2.6.xsd + - https://spase-group.org/data/schema/spase-2.2.8.xsd + - https://spase-group.org/data/schema/spase-2.2.9.xsd + - https://spase-group.org/data/schema/spase-2.3.0.xsd + - https://spase-group.org/data/schema/spase-2.3.1.xsd + - https://spase-group.org/data/schema/spase-2.3.2.xsd + - https://spase-group.org/data/schema/spase-2.4.0.xsd + - https://spase-group.org/data/schema/spase-2.4.1.xsd + - https://spase-group.org/data/schema/spase-2.4.2.xsd + - https://spase-group.org/data/schema/spase-2.5.0.xsd + - msc:g77 + - msc:g87 + - http://www.spase-group.org/data/model/spase-2_2_2.pdf + - http://www.spase-group.org/data/model/spase-2_2_3.pdf + - http://www.spase-group.org/data/model/spase-2_2_4.pdf + - http://www.spase-group.org/data/model/spase-2_2_5.pdf + - http://www.spase-group.org/data/model/spase-2_2_6.pdf + - http://www.spase-group.org/data/model/spase-2_2_7.pdf + - http://www.spase-group.org/data/model/spase-2_2_9.pdf + - http://www.spase-group.org/data/model/spase-2_2_8.pdf +tabular-data-package: + acronym: + field_of_science: + - sciences + identifier: + - type: local + value: msc:m77 + - type: local + value: https://doi.org/10.25504/FAIRsharing.082881 + - type: homepage + value: http://frictionlessdata.io/guides/tabular-data-package/ + subject_areas: + - Multidisciplinary + title: Tabular Data Package + urls: + - msc:m77 + - https://doi.org/10.25504/FAIRsharing.082881 + - http://frictionlessdata.io/guides/tabular-data-package/ + - msc:m10 +tei-text-encoding-initiative-guidelines: + acronym: TEI + field_of_science: + - history + - humanities + - languages and literature + identifier: + - type: local + value: msc:m99 + - type: local + value: https://doi.org/10.25504/FAIRsharing.87b86e + - type: homepage + value: http://www.tei-c.org/Guidelines/P5/ + - type: namespace + value: http://www.tei-c.org/ns/1.0 + subject_areas: + - History + - Languages + title: TEI (Text Encoding Initiative) Guidelines + urls: + - msc:m99 + - https://doi.org/10.25504/FAIRsharing.87b86e + - http://www.tei-c.org/Guidelines/P5/ + - https://www.tei-c.org/release/doc/tei-p5-doc/en/html/index.html + - http://www.tei-c.org/ns/1.0 + - msc:g120 + - 10.5281/zenodo.3459202 + - 10.5281/zenodo.3459220 + - 10.5281/zenodo.3459231 + - 10.5281/zenodo.3549615 + - 10.5281/zenodo.3413524 +tidcc-towards-international-data-commons-crystallography: + acronym: + field_of_science: + - crystallography + - natural sciences + identifier: + - type: local + value: msc:m78 + - type: local + value: https://fairsharing.org/208 + - type: homepage + value: http://wiki.ecrystals.chem.soton.ac.uk/images/9/9d/ECrystals-WP4-PM-Final.pdf + subject_areas: + - Crystallography + title: TIDCC (Towards an International Data Commons for Crystallography) + urls: 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msc:m80 + - https://doi.org/10.25504/FAIRsharing.b49fab + - http://www.agi.org.uk/uk-gemini/ + - msc:m22 +ukeof: + acronym: + field_of_science: + - remote sensing + - engineering and technology + - climatology + - meteorology + - ecology + - soil sciences + - natural sciences + - hydrology + - geology + - biological sciences + identifier: + - type: local + value: msc:m40 + - type: local + value: https://doi.org/10.25504/FAIRsharing.9xytp6 + - type: homepage + value: http://www.ukeof.org.uk/ + - type: schema + value: https://cataloguestaging.ukeof.org.uk/schema/ukeof.1.0.0.xsd + - type: schema + value: https://www.ukeof.org.uk/schema/1/UKEOF_v1.0.xsd + - type: namespace + value: http://www.ukeof.org.uk/schema/1 + subject_areas: + - Biogeography + - Biological diversity + - Climatology + - Ecology + - Geology + - Hydrology + - Meteorology + - Remote sensing + - Soil sciences + title: UKEOF + urls: + - msc:m40 + - https://doi.org/10.25504/FAIRsharing.9xytp6 + - http://schema.ukeof.org.uk/ + - http://www.ukeof.org.uk/ + - https://cataloguestaging.ukeof.org.uk/schema/ukeof.1.0.0.xsd + - https://www.ukeof.org.uk/schema/1/UKEOF_v1.0.xsd + - http://www.ukeof.org.uk/schema/1 + - msc:g37 + - msc:g108 + - msc:g109 + - msc:g115 +usgin-iso-profile: + acronym: + field_of_science: + - earth and related environmental sciences + - natural sciences + identifier: + - type: local + value: msc:m81 + - type: local + value: https://doi.org/10.25504/FAIRsharing.c82136 + - type: homepage + value: http://repository.stategeothermaldata.org/repository/resource/98ddf901b9782a25982e01af3b0bda50/ + subject_areas: + - Earth sciences + title: USGIN (US Geoscience Information Network) Metadata Profile + urls: + - msc:m81 + - https://doi.org/10.25504/FAIRsharing.c82136 + - http://repository.stategeothermaldata.org/repository/resource/98ddf901b9782a25982e01af3b0bda50/ + - http://usgin.github.io/usginspecs/USGIN_ISO_Metadata.htm + - msc:m22 + - msc:g116 + - msc:g116 +varioml: + acronym: + field_of_science: + - genetics + - natural sciences + identifier: + - type: local + value: msc:m82 + - type: local + value: https://doi.org/10.25504/FAIRsharing.pxvkt0 + - type: homepage + value: http://www.ncbi.nlm.nih.gov/pubmed/23031277 + - type: namespace + value: http://varioml.org/xml/1.0 + subject_areas: + - Genetics + title: VarioML + urls: + - msc:m82 + - https://doi.org/10.25504/FAIRsharing.pxvkt0 + - http://www.ncbi.nlm.nih.gov/pubmed/23031277 + - http://varioml.org/xml/1.0 + - msc:m27 +waterml: + acronym: + field_of_science: + - hydrology + - natural sciences + identifier: + - type: local + value: msc:m83 + - type: local + value: https://doi.org/10.25504/FAIRsharing.e07e1b + - type: homepage + value: http://www.opengeospatial.org/standards/waterml + - type: schema + value: https://schemas.opengis.net/waterml/2.0/waterml2.xsd + - type: namespace + value: http://www.opengis.net/waterml/2.0 + subject_areas: + - Hydrology + title: WaterML + urls: + - msc:m83 + - https://doi.org/10.25504/FAIRsharing.e07e1b + - http://www.opengeospatial.org/standards/waterml + - https://schemas.opengis.net/waterml/2.0/waterml2.xsd + - http://www.opengis.net/waterml/2.0 + - msc:m28 +wmo-core-metadata-profile: + acronym: + field_of_science: + - meteorology + - natural sciences + identifier: + - type: local + value: msc:m84 + - type: local + value: https://doi.org/10.25504/FAIRsharing.5e7bdc + - type: homepage + value: https://wis.wmo.int/2012/metadata/ + subject_areas: + - Meteorology + title: WMO Core Metadata Profile + urls: + - msc:m84 + - https://doi.org/10.25504/FAIRsharing.5e7bdc + - https://wis.wmo.int/2012/metadata/ + - msc:m22 +xmetadiss-schema: + acronym: xmetadiss + field_of_science: + - humanities + - library sciences + - sciences + identifier: + - type: local + value: fuji:m43 + - type: schema + value: https://d-nb.info/standards/schema/xmetadissplus.xsd + - type: namespace + value: http://www.d-nb.de/standards/xmetadissplus/ + - type: namespace + value: http://www.d-nb.de/standards/xMetaDiss/ + - type: homepage + value: http://www.d-nb.de/standards/xMetaDiss/ + subject_areas: + - Multidisciplinary + - Bibliographic standards + - Information/library standards + title: XmetaDiss + urls: + - fuji:m43 + - https://d-nb.info/standards/schema/xmetadissplus.xsd + - http://www.d-nb.de/standards/xmetadissplus/ + - http://www.d-nb.de/standards/xMetaDiss/ + - http://www.d-nb.de/standards/xMetaDiss/ + - https://d-nb.info/1260521133/34 +xoai-metadata-format: + acronym: XOAI + field_of_science: [] + identifier: + - type: local + value: fuji:m6 + - type: homepage + value: https://github.com/DSpace/xoai + - type: namespace + value: http://www.lyncode.com/xoai + subject_areas: + title: XOAI, a DSPACE Metadata Format + urls: + - fuji:m6 + - https://github.com/DSpace/xoai + - http://www.lyncode.com/xoai diff --git a/fuji_server/data/metadata_standards_uris.json b/fuji_server/data/metadata_standards_uris.json deleted file mode 100644 index 752abdb6..00000000 --- a/fuji_server/data/metadata_standards_uris.json +++ /dev/null @@ -1,45770 +0,0 @@ -{ - " http://schemas.seadatanet.org/StandardsSoftware/Metadata-formats/SDN2_CSR_ISO19139_5.0.0.xsd": { - "acronym": "CSR", - "field_of_science": [ - "earth and related environmental sciences", - "oceanography", - "glaciology", - "meteorology", - "climatology", - "hydrology", - "natural sciences" - ], - "id": "cruise-summary-reports", - "identifier": [ - { - "type": "local", - "value": "msc:m52" - }, - { - "type": "local", - "value": "https://doi.org/10.25504/FAIRsharing.e36460" - }, - { - "type": "homepage", - "value": "http://www.seadatanet.org/Metadata/CSR" - }, - { - "type": "namespace", - "value": "http://www.seadatanet.org" - }, - { - "type": "schema", - "value": "http://schemas.seadatanet.org/Standards-Software/Metadata-formats/SDN_CSR_ISO19139_5.2.0.xsd" - }, - { - "type": "schema", - "value": 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"identifier": [ - { - "type": "local", - "value": "fuji:m3" - }, - { - "type": "local", - "value": "https://doi.org/10.25504/FAIRsharing.d69ee0" - }, - { - "type": "homepage", - "value": "www.iso.org/iso/iso_catalogue/catalogue_tc/catalogue_detail.htm?csnumber=32554" - }, - { - "type": "namespace", - "value": "http://www.opengis.net/gml/3.2" - }, - { - "type": "namespace", - "value": "http://schemas.opengis.net/gml/3.2.1/gml.xsd" - } - ], - "subject_areas": [ - "Cartography", - "Climatology", - "Earth sciences", - "Geography", - "Geology", - "Glaciology", - "Hydrogeology", - "Hydrology", - "Meteorology", - "Oceanography", - "Topography" - ], - "title": "Geography Markup Language" - }, - "www.lido-schema.org/schema/latest/lido.xsd": { - "acronym": "LIDO", - "field_of_science": [ - "humanities" - ], - "id": "lido-lightweight-information-describing-objects", - "identifier": [ - { - "type": "local", - "value": "fuji:m18" - }, - { - "type": "local", - "value": 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- "type": "schema", - "value": "https://files.dnb.de/Web/xepicur.xsd" - }, - { - "type": "homepage", - "value": "https://wiki.dnb.de/display/URNSERVDOK/xepicur+-+XML-Datentransferformat+zur+Verwaltung+von+URN" - } - ], - "subject_areas": null, - "urls": [ - "urn:nbn:de:1111-2004033116", - " https://files.dnb.de/Web/xepicur.xsd", - "https://wiki.dnb.de/display/URNSERVDOK/xepicur+-+XML-Datentransferformat+zur+Verwaltung+von+URN" - ] - } -} diff --git a/fuji_server/data/metadata_standards_uris.yaml b/fuji_server/data/metadata_standards_uris.yaml new file mode 100644 index 00000000..b0cfb365 --- /dev/null +++ b/fuji_server/data/metadata_standards_uris.yaml @@ -0,0 +1,27331 @@ +' http://schemas.seadatanet.org/StandardsSoftware/Metadata-formats/SDN2_CSR_ISO19139_5.0.0.xsd': + acronym: CSR + field_of_science: + - earth and related environmental sciences + - oceanography + - glaciology + - meteorology + - climatology + - hydrology + - natural sciences + id: cruise-summary-reports + identifier: + - type: local + value: msc:m52 + - type: local + value: https://doi.org/10.25504/FAIRsharing.e36460 + - type: homepage + value: http://www.seadatanet.org/Metadata/CSR + - type: namespace + value: http://www.seadatanet.org + - type: schema + value: http://schemas.seadatanet.org/Standards-Software/Metadata-formats/SDN_CSR_ISO19139_5.2.0.xsd + - type: schema + value: http://schemas.seadatanet.org/StandardsSoftware/Metadata-formats/SDN2_CSR_ISO19139_5.0.0.xsd + subject_areas: + - Climatology + - Earth sciences + - Glaciology + - Hydrology + - Meteorology + - Oceanography + title: Cruise Summary Reports +' https://files.dnb.de/Web/xepicur.xsd': + acronym: epicur + field_of_science: [] + id: epicur-metadata-schema + identifier: + - type: local + value: fuji:m21 + - type: local + value: https://fairsharing.org/4659 + - type: namespace + value: urn:nbn:de:1111-2004033116 + - type: schema + value: https://files.dnb.de/Web/xepicur.xsd + - type: homepage + value: https://wiki.dnb.de/display/URNSERVDOK/xepicur+-+XML-Datentransferformat+zur+Verwaltung+von+URN + subject_areas: + title: xepicur +ABCD (Access to Biological Collection Data): + acronym: ABCD + field_of_science: + - biological sciences + - palaeontology + - genetics + - earth and related environmental sciences + - zoology + - geology + - botany + - natural sciences + id: abcd-access-biological-collection-data + identifier: + - type: local + value: msc:m1 + - type: local + value: https://doi.org/10.25504/FAIRsharing.kr3215 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/abcd-access-biological-collection-data + - type: homepage + value: http://wiki.tdwg.org/ABCD + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_3.0.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/3.0 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.1.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.1 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.06.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.06 + subject_areas: + - Biological diversity + - Botany + - Earth sciences + - Genetics + - Geology + - Palaeontology + - Zoology + urls: + - http://www.tdwg.org/standards/115/ + - http://wiki.tdwg.org/ABCD + - https://abcd.tdwg.org/xml/ABCD_3.0.xsd + - http://www.tdwg.org/schemas/abcd/3.0 + - https://abcd.tdwg.org/xml/ABCD_2.1.xsd + - http://www.tdwg.org/schemas/abcd/2.1 + - https://abcd.tdwg.org/xml/ABCD_2.06.xsd + - http://www.tdwg.org/schemas/abcd/2.06 +ABCDDNA: + acronym: ABCDDNA + field_of_science: + - genetics + - natural sciences + id: abcddna + identifier: + - type: local + value: msc:m42 + - type: local + value: https://doi.org/10.25504/FAIRsharing.7tx4ac + - type: homepage + value: http://www.tdwg.org/standards/640/ + - type: schema + value: http://www.dnabank-network.org/schemas/ABCDDNA/ABCDDNA.xsd + - type: namespace + value: http://www.dnabank-network.org/schemas/ABCDDNA + subject_areas: + - Genetics + urls: + - http://www.tdwg.org/standards/640/ + - http://www.dnabank-network.org/schemas/ABCDDNA/ABCDDNA.xsd + - http://www.dnabank-network.org/schemas/ABCDDNA +ABCDEFG (Access to Biological Collection Databases Extended for Geosciences): + acronym: ABCDEFG + field_of_science: + - palaeontology + - earth and related environmental sciences + - mineralogy + - natural sciences + id: abcdefg-access-biological-collection-databases-extended-geosciences + identifier: + - type: local + value: msc:m43 + - type: local + value: https://fairsharing.org/1396 + - type: homepage + value: http://www.geocase.eu/efg + - type: schema + value: http://www.geocase.eu/sites/geocase.biodiv.naturkundemuseum-berlin.de/documentation/abcdefg.xsd + - type: namespace + value: http://www.synthesys.info/ABCDEFG/1.0 + subject_areas: + - Earth sciences + - Mineralogy + - Palaeontology + urls: + - http://www.geocase.eu/efg + - http://www.geocase.eu/sites/geocase.biodiv.naturkundemuseum-berlin.de/documentation/abcdefg.xsd + - http://www.synthesys.info/ABCDEFG/1.0 +AGLS Metadata Profile: + acronym: AGLS + field_of_science: + - sciences + id: agls-metadata-profile + identifier: + - type: local + value: msc:m44 + - type: local + value: https://fairsharing.org/751 + - type: homepage + value: http://www.agls.gov.au + - type: namespace + value: http://www.agls.gov.au/agls/terms/ + subject_areas: + - Multidisciplinary + urls: + - http://www.agls.gov.au + - http://www.agls.gov.au/agls/terms/ +AGRIS Application Profile: + acronym: AGRIS + field_of_science: + - agricultural sciences + - agriculture + - animal and dairy science + - fisheries + id: agris-application-profile + identifier: + - type: local + value: msc:m45 + - type: local + value: https://doi.org/10.25504/FAIRsharing.32e620 + - type: homepage + value: http://www.fao.org/docrep/008/ae909e/ae909e00.htm + - type: namespace + value: http://www.fao.org/agris + subject_areas: + - Agricultural economics + - Agriculture + - Aquaculture + - Livestock + urls: + - http://www.fao.org/docrep/008/ae909e/ae909e00.htm + - http://www.fao.org/agris +ANZLIC Metadata Profile: + acronym: ANZLIC + field_of_science: + - cartography + - physical geography + - natural sciences + id: anzlic-metadata-profile + identifier: + - type: local + value: msc:m46 + - type: local + value: https://fairsharing.org/820 + - type: homepage + value: https://www.anzlic.gov.au/resources/anzlic-metadata-profile + subject_areas: + - Cartography + - Geography + - Topography + urls: + - https://www.anzlic.gov.au/resources/anzlic-metadata-profile +AODN Marine Community Profile: + acronym: AODN + field_of_science: + - earth and related environmental sciences + - oceanography + - glaciology + - meteorology + - climatology + - hydrology + - natural sciences + id: marine-community-profile + identifier: + - type: local + value: msc:m71 + - type: local + value: https://doi.org/10.25504/FAIRsharing.18b8b4 + - type: homepage + value: http://www.aodc.org.au/index.php?id=37 + - type: namespace + value: http://schemas.aodn.org.au/mcp-2.0 + - type: namespace + value: http://schemas.aodn.org.au + - type: schema + value: http://schemas.aodn.org.au/mcp-2.0/schema.xsd + subject_areas: + - Climatology + - Earth sciences + - Glaciology + - Hydrology + - Meteorology + - Oceanography + urls: + - https://mcp-profile-docs.readthedocs.io/en/stable/ + - http://www.aodc.org.au/index.php?id=37 + - http://schemas.aodn.org.au/mcp-2.0 + - http://schemas.aodn.org.au + - http://schemas.aodn.org.au/mcp-2.0/schema.xsd +ARIADNE Dataset Catalogue Model (ACDM): + acronym: ACDM + field_of_science: + - humanities + - archaeology + id: ariadne-dataset-catalogue-model + identifier: + - type: local + value: fuji:m19 + - type: local + value: https://fairsharing.org/4647 + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - type: namespace + value: http://registry.ariadne-infrastructure.eu/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/ + - type: namespace + value: http://ariadne-registry.dcu.gr/schema-definition + - type: homepage + value: http://ariadne-registry.dcu.gr/ + subject_areas: + - Archaeology + urls: + - http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - http://registry.ariadne-infrastructure.eu/ + - https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - https://www.ariadne-infrastructure.eu/resource/ao/ + - http://ariadne-registry.dcu.gr/schema-definition + - http://ariadne-registry.dcu.gr/ +AVM (Astronomy Visualization Metadata): + acronym: AVM + field_of_science: + - astronomy + - natural sciences + id: avm-astronomy-visualization-metadata + identifier: + - type: local + value: msc:m3 + - type: local + value: https://doi.org/10.25504/FAIRsharing.338ze0 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/avm-astronomy-visualization-metadata + - type: homepage + value: http://www.virtualastronomy.org/avm_metadata.php + - type: namespace + value: http://www.communicatingastronomy.org/avm/1.0/ + subject_areas: + - Astronomy + urls: + - http://www.virtualastronomy.org/avm_metadata.php#2 + - http://www.virtualastronomy.org/avm_metadata.php + - http://www.communicatingastronomy.org/avm/1.0/ +Academic Metadata Format: + acronym: AMF + field_of_science: + - sciences + id: amf-academic-metadata-format + identifier: + - type: local + value: fuji:m25 + - type: local + value: https://fairsharing.org/4646 + - type: namespace + value: http://amf.openlib.org + - type: homepage + value: http://amf.openlib.org + - type: schema + value: http://amf.openlib.org/2001/amf.xsd + subject_areas: + - Multidisciplinary + urls: + - http://openlib.org/home/krichel/ebisu.html + - http://amf.openlib.org + - http://amf.openlib.org + - http://amf.openlib.org/2001/amf.xsd +AgMES (Agricultural Metadata Element Set): + acronym: AgMES + field_of_science: + - agricultural sciences + - agriculture + - animal and dairy science + - fisheries + id: agmes-agricultural-metadata-element-set + identifier: + - type: local + value: msc:m2 + - type: local + value: https://doi.org/10.25504/FAIRsharing.vd694s + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/agmes-agricultural-metadata-element-set + - type: homepage + value: http://aims.fao.org/standards/agmes + - type: namespace + value: http://purl.org/agmes/1.1/ + subject_areas: + - Agricultural economics + - Agriculture + - Aquaculture + - Livestock + urls: + - http://aims.fao.org/es/standards/agmes/namespace-specification + - http://aims.fao.org/standards/agmes + - http://purl.org/agmes/1.1/ + - http://purl.org/agmes/1.1/ +Apple Core: + acronym: aDwC + field_of_science: + - botany + - natural sciences + id: apple-core + identifier: + - type: local + value: msc:m47 + - type: local + value: https://fairsharing.org/726 + - type: homepage + value: http://code.google.com/p/applecore/wiki/Introduction + subject_areas: + - Botany + urls: + - http://code.google.com/p/applecore/wiki/Introduction +Asset Description Metadata Schema (ADMS): + acronym: ADMS + field_of_science: + - political sciences + - social sciences + id: asset-description-metadata-schema-adms + identifier: + - type: local + value: msc:m48 + - type: local + value: https://doi.org/10.25504/FAIRsharing.es2t25 + - type: homepage + value: http://www.w3.org/TR/vocab-adms/ + - type: namespace + value: http://www.w3.org/ns/adms# + subject_areas: + - Social policy + urls: + - http://www.w3.org/TR/vocab-adms/ + - http://www.w3.org/ns/adms# +BibTeX: + acronym: BibTeX + field_of_science: [] + id: bibtex-format + identifier: + - type: local + value: fuji:m34 + - type: local + value: https://doi.org/10.25504/FAIRsharing.bdf2fe + - type: homepage + value: http://www.bibtex.org/ + - type: namespace + value: http://clarin-pl.eu/ns/experimental/bibtex + - type: namespace + value: http://lindat.mff.cuni.cz/ns/experimental/bibtex + - type: namespace + value: http://repository.clarin.dk/ns/experimental/bibtex + subject_areas: + urls: + - http://www.bibtex.org/ + - http://clarin-pl.eu/ns/experimental/bibtex + - http://lindat.mff.cuni.cz/ns/experimental/bibtex + - http://repository.clarin.dk/ns/experimental/bibtex +CARARE metadata schema: + acronym: CARARE + field_of_science: + - architectural design + - humanities + - archaeology + - history + id: carare-metadata-schema + identifier: + - type: local + value: msc:m49 + - type: local + value: https://doi.org/10.25504/FAIRsharing.ba7c93 + - type: homepage + value: https://pro.carare.eu/doku.php?id=support:metadata-schema + - type: namespace + value: http://www.carare.eu/carareSchema + - type: schema + value: https://pro.carare.eu/lib/exe/fetch.php?media=support:carare-v1_0_6_1.xsd + subject_areas: + - Archaeology + - Architecture + - Cultural heritage + - Cultural property preservation + - History + urls: + - https://pro.carare.eu/doku.php?id=support:metadata-schema + - http://www.carare.eu/carareSchema + - https://pro.carare.eu/lib/exe/fetch.php?media=support:carare-v1_0_6_1.xsd +CDWA Lite: + acronym: cdwa-lite + field_of_science: + - humanities + id: cdwa-lite-schema + identifier: + - type: local + value: fuji:m30 + - type: local + value: https://fairsharing.org/4649 + - type: homepage + value: https://www.getty.edu/research/publications/electronic_publications/cdwa/cdwalite.html + - type: namespace + value: https://www.getty.edu/CDWA/CDWALite + - type: schema + value: http://www.getty.edu/CDWA/CDWALite/CDWALite-xsd-public-v1-1.xsd + - type: schema + value: http://www.getty.edu/CDWA/CDWALite/CDWALite-xsd-public-v1-0.xsd + subject_areas: + - Humanities + - Cultural heritage + urls: + - https://www.getty.edu/research/publications/electronic_publications/cdwa/cdwalite.pdf + - https://www.getty.edu/research/publications/electronic_publications/cdwa/cdwalite.html + - https://www.getty.edu/CDWA/CDWALite + - http://www.getty.edu/CDWA/CDWALite/CDWALite-xsd-public-v1-1.xsd + - http://www.getty.edu/CDWA/CDWALite/CDWALite-xsd-public-v1-0.xsd +CEDAR Template Model: + acronym: CEDAR + field_of_science: + - engineering and technology + - agricultural sciences + - medical engineering + - earth and related environmental sciences + - clinical medicine + - social sciences + - medical and health sciences + - public administration + - agriculture + - natural sciences + id: cedar-template-model + identifier: + - type: local + value: msc:m94 + - type: local + value: https://doi.org/10.25504/FAIRsharing.V527H4 + - type: homepage + value: https://more.metadatacenter.org/tools-training/outreach/cedar-template-model + subject_areas: + - Administration + - Agricultural research + - Clinical medicine + - Earth sciences + - Medical information systems + urls: + - https://more.metadatacenter.org/tools-training/outreach/cedar-template-model + - https://more.metadatacenter.org/sites/default/files/artifact/CEDAR%20Template%20Model%20v1.5.0_0.pdf +CERIF (Common European Research Information Format): + acronym: CERIF + field_of_science: + - sciences + id: cerif + identifier: + - type: local + value: msc:m4 + - type: local + value: https://doi.org/10.25504/FAIRsharing.6945dq + - type: homepage + value: http://www.eurocris.org/cerif/main-features-cerif + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.6/CERIF_1.6_2.xsd + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.5/CERIF_1.5_1.xsd + - type: schema + value: https://www.openaire.eu/schema/cris/1.1/openaire-cerif-profile.xsd + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.6-2 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.5-1 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.4-0 + - type: namespace + value: http://www.eurocris.org/ontologies/cerif/1.3# + - type: namespace + value: https://www.openaire.eu/cerif-profile/1.1/ + subject_areas: + - Multidisciplinary + urls: + - http://www.eurocris.org/Uploads/Web%20pages/CERIF-1.6/documentation/MInfo.html + - http://www.eurocris.org/cerif/main-features-cerif + - https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.6/CERIF_1.6_2.xsd + - https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.5/CERIF_1.5_1.xsd + - https://www.openaire.eu/schema/cris/1.1/openaire-cerif-profile.xsd + - urn:xmlns:org:eurocris:cerif-1.6-2 + - urn:xmlns:org:eurocris:cerif-1.5-1 + - urn:xmlns:org:eurocris:cerif-1.4-0 + - http://www.eurocris.org/ontologies/cerif/1.3# + - https://www.openaire.eu/cerif-profile/1.1/ +CESSDA MLI - Council of European Social Science Data Archives Minimum Level of Information: + acronym: + field_of_science: + - demography + - economics + - social geography + - sociology + - social sciences + id: cessda-mli-council-european-social-science-data-archives-minimum-level-inf + identifier: + - type: local + value: msc:m50 + - type: local + value: https://fairsharing.org/4272 + - type: homepage + value: http://www.cessda.org/sharing/managing/3/ + subject_areas: + - Demography + - Economics + - Land use + - Sociology + urls: + - http://www.cessda.org/sharing/managing/3/ +CF (Climate and Forecast) Metadata Conventions: + acronym: CF + field_of_science: + - oceanography + - meteorology + - climatology + - natural sciences + id: cf-climate-and-forecast-metadata-conventions + identifier: + - type: local + value: msc:m5 + - type: local + value: https://doi.org/10.25504/FAIRsharing.f8cd83 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/cf-climate-and-forecast-metadata-conventions + - type: homepage + value: http://cfconventions.org/ + subject_areas: + - Climatology + - Meteorology + - Oceanography + urls: + - http://cfconventions.org/documents.html + - http://cfconventions.org/ +CIF (Crystallographic Information Framework): + acronym: CIF + field_of_science: + - engineering and technology + - chemical sciences + - crystallography + - materials engineering + - natural sciences + id: cif-crystallographic-information-framework + identifier: + - type: local + value: msc:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.zr52g5 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/cif-crystallographic-information-framework + - type: homepage + value: http://www.iucr.org/resources/cif + subject_areas: + - Chemistry + - Crystallography + - Materials engineering + urls: + - http://www.iucr.org/resources/cif/spec + - http://www.iucr.org/resources/cif +CIM (Common Information Model): + acronym: CIM + field_of_science: + - climatology + - natural sciences + id: cim-common-information-model + identifier: + - type: local + value: msc:m7 + - type: local + value: https://doi.org/10.25504/FAIRsharing.k3z4q9 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/cim-common-information-model + - type: homepage + value: https://earthsystemcog.org/projects/es-doc-models/cim + - type: schema + value: https://github.com/ES-DOC/esdoc-cim/blob/v1.10.0/cim.xsd + subject_areas: + - Climatology + urls: + - https://earthsystemcog.org/projects/es-doc-models/cim_versions + - https://earthsystemcog.org/projects/es-doc-models/cim + - https://github.com/ES-DOC/esdoc-cim/blob/v1.10.0/cim.xsd +COARDS Conventions: + acronym: + field_of_science: + - oceanography + - meteorology + - climatology + - natural sciences + id: coards-conventions + identifier: + - type: local + value: msc:m51 + - type: local + value: https://doi.org/10.25504/FAIRsharing.9614ca + - type: homepage + value: http://ferret.wrc.noaa.gov/noaa_coop/coop_cdf_profile.html + subject_areas: + - Climatology + - Meteorology + - Oceanography + urls: + - http://ferret.wrc.noaa.gov/noaa_coop/coop_cdf_profile.html +CSDGM Extensions for Remote Sensing Metadata: + acronym: CSDGM + field_of_science: + - oceanography + - meteorology + - climatology + - hydrology + - natural sciences + id: csdgm-extensions-remote-sensing-metadata + identifier: + - type: local + value: msc:m53 + - type: local + value: https://fairsharing.org/1445 + - type: homepage + value: http://www.fgdc.gov/standards/projects/FGDC-standards-projects/csdgm_rs_ex/MetadataRemoteSensingExtens.pdf + subject_areas: + - Climatology + - Hydrology + - Meteorology + - Oceanography + urls: + - http://www.fgdc.gov/standards/projects/FGDC-standards-projects/csdgm_rs_ex/MetadataRemoteSensingExtens.pdf +CSMD (Core Scientific Metadata Model): + acronym: CSMD + field_of_science: + - engineering and technology + - chemical sciences + - crystallography + - materials engineering + - biochemistry + - natural sciences + id: csmd-cclrc-core-scientific-metadata-model + identifier: + - type: local + value: msc:m8 + - type: local + value: https://doi.org/10.25504/FAIRsharing.30fk89 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/csmd-cclrc-core-scientific-metadata-model + - type: homepage + value: http://icatproject-contrib.github.io/CSMD/ + - type: namespace + value: http://www.purl.org/net/CSMD/4.0# + - type: namespace + value: http://www.escience.clrc.ac.uk/schemas/scientific + subject_areas: + - Biochemistry + - Chemistry + - Crystallography + - Materials engineering + urls: + - http://icatproject-contrib.github.io/CSMD/ + - http://www.purl.org/net/CSMD/4.0# + - http://www.escience.clrc.ac.uk/schemas/scientific +Catalogue Service for the Web: + acronym: CSW + field_of_science: + - cartography + - earth and related environmental sciences + - natural sciences + id: csw-catalogue-schema + identifier: + - type: local + value: fuji:m32 + - type: local + value: https://fairsharing.org/4650 + - type: schema + value: http://schemas.opengis.net/csw/2.0.2/CSW-publication.xsd + - type: namespace + value: http://www.opengis.net/cat/csw/2.0.2 + - type: namespace + value: http://www.opengis.net/cat/csw/3.0 + - type: schema + value: http://schemas.opengis.net/cat/csw/3.0/cswAll.xsd + - type: homepage + value: https://www.ogc.org/standard/cat/ + subject_areas: + - Cartography + - Earth sciences + urls: + - http://schemas.opengis.net/csw/2.0.2/CSW-publication.xsd + - http://www.opengis.net/cat/csw/2.0.2 + - http://www.opengis.net/cat/csw/3.0 + - http://schemas.opengis.net/cat/csw/3.0/cswAll.xsd + - https://www.ogc.org/standard/cat/ +CharDM, Data Model for Astronomical DataSet Characterisation: + acronym: CharDM + field_of_science: [] + id: chardm-astronomical-dataset-characterisation + identifier: + - type: local + value: fuji:m29 + - type: local + value: https://doi.org/10.25504/FAIRsharing.yYjZWb + - type: homepage + value: https://www.ivoa.net/documents/cover/CharacterisationDM-20070530.html + - type: schema + value: http://www.ivoa.net/xml/Characterisation/Characterisation-v1.11.xsd + subject_areas: + urls: + - https://www.ivoa.net/documents/cover/CharacterisationDM-20070530.html + - http://www.ivoa.net/xml/Characterisation/Characterisation-v1.11.xsd +Clarivate Data Citation Index Schema: + acronym: dci + field_of_science: + - library sciences + - humanities + id: clarivate-data-citation-index-schema + identifier: + - type: local + value: fuji:m39 + - type: namespace + value: https://clarivate.com/products/web-of-science/web-science-form/data-citation-index/ + - type: homepage + value: https://clarivate.com/products/scientific-and-academic-research/research-discovery-and-workflow-solutions/webofscience-platform/data-citation-index/ + subject_areas: + - Bibliographic standards + urls: + - https://clarivate.com/products/web-of-science/web-science-form/data-citation-index/ + - https://clarivate.com/products/scientific-and-academic-research/research-discovery-and-workflow-solutions/webofscience-platform/data-citation-index/ +Component MetaData Specification (CMDI): + acronym: CMDI + field_of_science: + - languages and literature + - humanities + - linguistics + id: cmd-component-metadata + identifier: + - type: local + value: fuji:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2e0599 + - type: namespace + value: http://www.clarin.eu/cmd/ + - type: namespace + value: https://www.clarin.eu/cmd/1 + - type: homepage + value: https://www.clarin.eu/content/component-metadata + - type: namespace + value: http://www.clarin.eu/cmd/1 + - type: schema + value: http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - type: schema + value: https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - type: schema + value: https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd + subject_areas: + - Linguistics + - Languages + urls: + - http://www.clarin.eu/cmd/ + - https://www.clarin.eu/cmd/1 + - https://www.clarin.eu/content/component-metadata + - https://pure.mpg.de/pubman/faces/ViewItemOverviewPage.jsp?itemId=item_1480943 + - http://www.clarin.eu/cmd/1 + - http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd +Crossref Schema: + acronym: crossref + field_of_science: + - sciences + id: crossref-schema + identifier: + - type: local + value: fuji:m40 + - type: local + value: https://doi.org/10.25504/FAIRsharing.bbQbSW + - type: homepage + value: http://www.crossref.org/schema + - type: namespace + value: http://www.crossref.org/schema/4.4.0 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.0.xsd + - type: schema + value: https://data.crossref.org/schemas/crossref4.3.7.xsd + - type: namespace + value: http://www.crossref.org/schema/4.3.7 + - type: namespace + value: http://www.crossref.org/schema/4.4.1 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.1.xsd + - type: namespace + value: http://www.crossref.org/schema/4.4.2 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.2.xsd + - type: namespace + value: http://www.crossref.org/schema/4.8.1 + - type: schema + value: https://data.crossref.org/schemas/crossref4.8.1.xsd + - type: namespace + value: http://www.crossref.org/schema/5.3.1 + - type: schema + value: https://data.crossref.org/schemas/crossref5.3.1.xsd + subject_areas: + - Multidisciplinary + urls: + - http://www.crossref.org/schema + - http://www.crossref.org/schema/4.4.0 + - https://data.crossref.org/schemas/crossref4.4.0.xsd + - https://data.crossref.org/schemas/crossref4.3.7.xsd + - http://www.crossref.org/schema/4.3.7 + - http://www.crossref.org/schema/4.4.1 + - https://data.crossref.org/schemas/crossref4.4.1.xsd + - http://www.crossref.org/schema/4.4.2 + - https://data.crossref.org/schemas/crossref4.4.2.xsd + - http://www.crossref.org/schema/4.8.1 + - https://data.crossref.org/schemas/crossref4.8.1.xsd + - http://www.crossref.org/schema/5.3.1 + - https://data.crossref.org/schemas/crossref5.3.1.xsd +Cruise Summary Reports: + acronym: CSR + field_of_science: + - earth and related environmental sciences + - oceanography + - glaciology + - meteorology + - climatology + - hydrology + - natural sciences + id: cruise-summary-reports + identifier: + - type: local + value: msc:m52 + - type: local + value: https://doi.org/10.25504/FAIRsharing.e36460 + - type: homepage + value: http://www.seadatanet.org/Metadata/CSR + - type: namespace + value: http://www.seadatanet.org + - type: schema + value: http://schemas.seadatanet.org/Standards-Software/Metadata-formats/SDN_CSR_ISO19139_5.2.0.xsd + - type: schema + value: http://schemas.seadatanet.org/StandardsSoftware/Metadata-formats/SDN2_CSR_ISO19139_5.0.0.xsd + subject_areas: + - Climatology + - Earth sciences + - Glaciology + - Hydrology + - Meteorology + - Oceanography + urls: + - http://www.seadatanet.org/Metadata/CSR + - http://www.seadatanet.org + - http://schemas.seadatanet.org/Standards-Software/Metadata-formats/SDN_CSR_ISO19139_5.2.0.xsd + - ' http://schemas.seadatanet.org/StandardsSoftware/Metadata-formats/SDN2_CSR_ISO19139_5.0.0.xsd' +DCAT (Data Catalog Vocabulary): + acronym: DCAT + field_of_science: + - sciences + id: dcat-data-catalog-vocabulary + identifier: + - type: local + value: msc:m12 + - type: local + value: https://doi.org/10.25504/FAIRsharing.h4j3qm + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dcat-data-catalog-vocabulary + - type: homepage + value: http://www.w3.org/TR/vocab-dcat/ + - type: homepage + value: https://www.w3.org/2017/dxwg/wiki/Main_Page + - type: namespace + value: http://www.w3.org/ns/dcat# + subject_areas: + - Multidisciplinary + urls: + - https://www.w3.org/TR/vocab-dcat/#class-dataset + - https://www.w3.org/TR/vocab-dcat/#class-catalog + - http://www.w3.org/TR/vocab-dcat/ + - https://www.w3.org/ns/dcat.ttl + - https://www.w3.org/2017/dxwg/wiki/Main_Page + - http://www.w3.org/ns/dcat# +DDI (Data Documentation Initiative): + acronym: DDI + field_of_science: + - public health + - demography + - law + - economics + - statistics and probability + - social geography + - sociology + - social sciences + - history + - medical and health sciences + - political sciences + - humanities + - natural sciences + id: ddi-data-documentation-initiative + identifier: + - type: local + value: msc:m13 + - type: local + value: https://doi.org/10.25504/FAIRsharing.1t5ws6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.EZCpPd + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - type: homepage + value: http://www.ddialliance.org/ + - type: namespace + value: http://www.icpsr.umich.edu/DDI + - type: schema + value: http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - type: namespace + value: ddi:codebook:2_5 + - type: namespace + value: ddi:dataset:3_3 + - type: namespace + value: ddi:dataset:3_2 + - type: namespace + value: ddi:dataset:3_1 + - type: namespace + value: ddi:instance:3_1 + - type: namespace + value: ddi:instance:3_2 + - type: namespace + value: ddi:instance:3_3 + - type: namespace + value: ddi:dataset:3_0 + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd + subject_areas: + - Demography + - Economics + - Health policy + - History + - Human geography + - Land use + - Law + - Politics + - Social policy + - Sociology + - Statistics + urls: + - http://www.ddialliance.org/Specification/ + - http://www.ddialliance.org/ + - http://www.icpsr.umich.edu/DDI + - http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - ddi:codebook:2_5 + - ddi:dataset:3_3 + - ddi:dataset:3_2 + - ddi:dataset:3_1 + - ddi:instance:3_1 + - ddi:instance:3_2 + - ddi:instance:3_3 + - ddi:dataset:3_0 + - https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd +DIF (Directory Interchange Format): + acronym: DIF + field_of_science: + - agricultural sciences + - oceanography + - glaciology + - marine biology + - climatology + - ecology + - meteorology + - hydrology + - biochemistry + - agriculture + - natural sciences + id: dif-directory-interchange-format + identifier: + - type: local + value: msc:m14 + - type: local + value: https://doi.org/10.25504/FAIRsharing.esxaaq + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dif-directory-interchange-format + - type: homepage + value: http://gcmd.nasa.gov/add/difguide/ + - type: schema + value: https://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/dif_v10.2.xsd + - type: schema + value: http://gcmd.nasa.gov/Aboutus/xml/dif/dif.xsd + - type: schema + value: https://git.earthdata.nasa.gov/projects/EMFD/repos/dif-schemas/browse/10.x/dif.xsd + - type: namespace + value: http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/ + - type: namespace + value: http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif + - type: schema + value: http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/dif_v9.4.xsd + subject_areas: + - Agriculture + - Biochemistry + - Climatology + - Ecology + - Glaciology + - Hydrology + - Marine biology + - Meteorology + - Oceanography + urls: + - http://gcmd.nasa.gov/add/difguide/WRITEADIF.pdf + - http://gcmd.nasa.gov/add/difguide/ + - https://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/dif_v10.2.xsd + - http://gcmd.nasa.gov/Aboutus/xml/dif/dif.xsd + - https://git.earthdata.nasa.gov/projects/EMFD/repos/dif-schemas/browse/10.x/dif.xsd + - http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/ + - http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif + - http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/dif_v9.4.xsd +DSpace Intermediate Metadata Format: + acronym: dspace-dim + field_of_science: [] + id: dim-dspace-intermediate-format + identifier: + - type: local + value: fuji:m36 + - type: namespace + value: http://www.dspace.org/xmlns/dspace/dim + - type: homepage + value: https://wiki.lyrasis.org/display/DSPACE/ + subject_areas: + urls: + - http://www.dspace.org/xmlns/dspace/dim + - https://wiki.lyrasis.org/display/DSPACE/ +Darwin Core: + acronym: DwC + field_of_science: + - biological sciences + - palaeontology + - earth and related environmental sciences + - cartography + - oceanography + - marine biology + - zoology + - ecology + - botany + - physical geography + - natural sciences + id: darwin-core + identifier: + - type: local + value: msc:m9 + - type: local + value: https://doi.org/10.25504/FAIRsharing.xvf5y3 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/darwin-core + - type: homepage + value: http://rs.tdwg.org/dwc/index.htm + - type: namespace + value: http://rs.tdwg.org/dwc/terms/ + - type: namespace + value: http://rs.tdwg.org/dwc/iri/ + - type: schema + value: http://rs.tdwg.org/dwc/xsd/tdwg_dwc_simple.xsd + subject_areas: + - Biogeography + - Biological diversity + - Botany + - Cartography + - Earth sciences + - Ecology + - Marine animals + - Oceanography + - Palaeontology + - Physical geography + - Topography + - Zoology + urls: + - http://www.tdwg.org/standards/450 + - http://rs.tdwg.org/dwc/index.htm + - http://rs.tdwg.org/dwc/terms/ + - http://rs.tdwg.org/dwc/iri/ + - http://rs.tdwg.org/dwc/xsd/tdwg_dwc_simple.xsd +Darwin Core Geospatial Extension: + acronym: DwC-S + field_of_science: + - cartography + - biological sciences + - physical geography + - natural sciences + id: darwin-core-geospatial-extension + identifier: + - type: local + value: msc:m54 + - type: local + value: https://doi.org/10.25504/FAIRsharing.76c06d + - type: homepage + value: http://wiki.tdwg.org/twiki/bin/view/DarwinCore/GeospatialExtension + subject_areas: + - Biogeography + - Cartography + - Topography + urls: + - http://wiki.tdwg.org/twiki/bin/view/DarwinCore/GeospatialExtension +Data Package: + acronym: + field_of_science: + - sciences + id: data-package + identifier: + - type: local + value: msc:m10 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3b861d + - type: homepage + value: https://frictionlessdata.io/data-packages/ + subject_areas: + - Multidisciplinary + urls: + - https://frictionlessdata.io/specs/data-package/ + - https://frictionlessdata.io/data-packages/ +DataCite Metadata Schema: + acronym: datacite + field_of_science: + - sciences + id: datacite-metadata-schema + identifier: + - type: local + value: msc:m11 + - type: local + value: https://doi.org/10.25504/FAIRsharing.me4qwe + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/datacite-metadata-schema + - type: homepage + value: http://schema.datacite.org + - type: namespace + value: http://datacite.org/schema/kernel + subject_areas: + - Multidisciplinary + urls: + - http://schema.datacite.org + - http://datacite.org/schema/kernel + - http://schema.datacite.org/meta/kernel-2.1/doc/DataCite-MetadataKernel_v2.2.pdf + - http://schema.datacite.org/meta/kernel-2.1/metadata.xsd + - http://datacite.org/schema/kernel-2.1 + - http://schema.datacite.org/meta/kernel-2.2/doc/DataCite-MetadataKernel_v2.2.pdf + - http://schema.datacite.org/meta/kernel-2.2/metadata.xsd + - http://datacite.org/schema/kernel-2.2 + - http://schema.datacite.org/meta/kernel-3.0/doc/DataCite-MetadataKernel_v3.0.pdf + - http://schema.datacite.org/meta/kernel-3.0/metadata.xsd + - http://datacite.org/schema/kernel-3 + - http://schema.datacite.org/meta/kernel-3.1/doc/DataCite-MetadataKernel_v3.1.pdf + - http://schema.datacite.org/meta/kernel-3.1/metadata.xsd + - http://datacite.org/schema/kernel-3.1 + - http://schema.datacite.org/meta/kernel-4.0/doc/DataCite-MetadataKernel_v4.0.pdf + - http://schema.datacite.org/meta/kernel-4.0/metadata.xsd + - http://datacite.org/schema/kernel-4 +Digital Item Declaration Language (DIDL): + acronym: DIDL + field_of_science: + - sciences + id: didl-digital-item-declaration-language + identifier: + - type: local + value: fuji:m4 + - type: local + value: https://fairsharing.org/4652 + - type: namespace + value: urn:mpeg:mpeg21:2002:02-DIDL-NS + - type: homepage + value: https://www.iso.org/standard/35366.html + subject_areas: + - Multidisciplinary + urls: + - urn:mpeg:mpeg21:2002:02-DIDL-NS + - http://www.dlib.org/dlib/november03/bekaert/11bekaert.html + - https://www.iso.org/standard/35366.html +Dryad Metadata Application Profile: + acronym: + field_of_science: + - sciences + id: dryad-metadata-application-profile + identifier: + - type: local + value: msc:m55 + - type: homepage + value: http://wiki.datadryad.org/Metadata_Profile + - type: namespace + value: http://datadryad.org/metadata/ + - type: schema + value: http://datadryad.org/profile/v3.1/dryad.xsd + - type: schema + value: http://datadryad.org/profile/v3/dryad.xsd + - type: schema + value: http://ils.unc.edu/mrc/dryad/version1_0/dryad_1_0.xsd + subject_areas: + - Multidisciplinary + urls: + - http://wiki.datadryad.org/Metadata_Profile + - http://datadryad.org/metadata/ + - http://datadryad.org/profile/v3.1/dryad.xsd + - http://datadryad.org/profile/v3/dryad.xsd + - http://ils.unc.edu/mrc/dryad/version1_0/dryad_1_0.xsd +Dublin Core: + acronym: DC + field_of_science: + - sciences + id: dublin-core + identifier: + - type: local + value: msc:m15 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3nx7t + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dublin-core + - type: homepage + value: http://dublincore.org + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/dcterms.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/simpledc20021212.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/dc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/dcmitype.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/simpledc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/qualifieddc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/dc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/dcterms.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/dcmitype.xsd + - type: namespace + value: http://purl.org/dc/elements/1.1/ + - type: namespace + value: http://purl.org/dc/terms/ + - type: namespace + value: http://purl.org/dc/dcmitype/ + subject_areas: + - Multidisciplinary + urls: + - http://dublincore.org/specifications/ + - http://dublincore.org + - http://dublincore.org/schemas/xmls/qdc/2008/02/11/dcterms.xsd + - http://dublincore.org/schemas/xmls/simpledc20021212.xsd + - http://dublincore.org/schemas/xmls/qdc/2008/02/11/dc.xsd + - http://dublincore.org/schemas/xmls/qdc/2008/02/11/dcmitype.xsd + - http://dublincore.org/schemas/xmls/qdc/2008/02/11/simpledc.xsd + - http://dublincore.org/schemas/xmls/qdc/2008/02/11/qualifieddc.xsd + - http://dublincore.org/schemas/xmls/qdc/dc.xsd + - http://dublincore.org/schemas/xmls/qdc/dcterms.xsd + - http://dublincore.org/schemas/xmls/qdc/dcmitype.xsd + - http://purl.org/dc/elements/1.1/ + - http://purl.org/dc/terms/ + - http://purl.org/dc/dcmitype/ +DwC Germplasm: + acronym: + field_of_science: + - botany + - natural sciences + id: dwc-germplasm + identifier: + - type: local + value: msc:m56 + - type: local + value: https://doi.org/10.25504/FAIRsharing.hgsFLe + - type: homepage + value: http://code.google.com/p/darwincore-germplasm/ + - type: namespace + value: http://purl.org/germplasm# + - type: namespace + value: http://purl.org/germplasm/germplasmTerm# + subject_areas: + - Botany + urls: + - http://code.google.com/p/darwincore-germplasm/ + - http://purl.org/germplasm# + - http://purl.org/germplasm/germplasmTerm# +EAD (Encoded Archival Description): + acronym: ead + field_of_science: + - humanities + - history + id: ead-encoded-archival-description + identifier: + - type: local + value: msc:m96 + - type: local + value: https://doi.org/10.25504/FAIRsharing.95f59a + - type: homepage + value: https://www.loc.gov/ead/ + - type: namespace + value: urn:isbn:1-931666-22-9 + - type: namespace + value: http://ead3.archivists.org/schema + - type: namespace + value: http://ead3.archivists.org/schema/ + subject_areas: + - History + urls: + - https://www.loc.gov/ead/ + - urn:isbn:1-931666-22-9 + - http://ead3.archivists.org/schema + - http://ead3.archivists.org/schema/ + - https://www.loc.gov/ead/tglib1998/ + - https://www.loc.gov/ead/ag/aghome.html + - https://www.loc.gov/ead/ead.xsd + - ftp://ftp.loc.gov/pub/ead/ead.dtd + - https://www.loc.gov/ead/tglib/ + - https://www.loc.gov/ead/ead3.xsd + - https://www.loc.gov/ead/ead3.dtd + - https://www.loc.gov/ead/EAD3taglib/EAD3.html +EDMED Metadata Profile: + acronym: + field_of_science: + - oceanography + - glaciology + - meteorology + - climatology + - ecology + - hydrology + - environmental sciences + - hydrogeology + - soil sciences + - natural sciences + id: edmed-metadata-profile + identifier: + - type: local + value: msc:m58 + - type: local + value: https://doi.org/10.25504/FAIRsharing.ed7f20 + - type: homepage + value: https://www.bodc.ac.uk/data/information_and_inventories/edmed/ + - type: schema + value: EDMED_sdn_V1.2.xsd + subject_areas: + - Climatology + - Ecology + - Environmental sciences + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Soil sciences + urls: + - https://www.bodc.ac.uk/data/information_and_inventories/edmed/ + - EDMED_sdn_V1.2.xsd +EDMED_sdn_V1.2.xsd: + acronym: + field_of_science: + - oceanography + - glaciology + - meteorology + - climatology + - ecology + - hydrology + - environmental sciences + - hydrogeology + - soil sciences + - natural sciences + id: edmed-metadata-profile + identifier: + - type: local + value: msc:m58 + - type: local + value: https://doi.org/10.25504/FAIRsharing.ed7f20 + - type: homepage + value: https://www.bodc.ac.uk/data/information_and_inventories/edmed/ + - type: schema + value: EDMED_sdn_V1.2.xsd + subject_areas: + - Climatology + - Ecology + - Environmental sciences + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Soil sciences + title: EDMED Metadata Profile +EML (Ecological Metadata Language): + acronym: EML + field_of_science: + - biological sciences + - zoology + - ecology + - botany + - natural sciences + id: eml-ecological-metadata-language + identifier: + - type: local + value: msc:m16 + - type: local + value: https://doi.org/10.25504/FAIRsharing.r3vtvx + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/eml-ecological-metadata-language + - type: homepage + value: https://eml.ecoinformatics.org/ + - type: namespace + value: eml://eml.ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.1 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.1 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.0 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.1 + - type: schema + value: https://eml.ecoinformatics.org/schema/eml_xsd + subject_areas: + - Biological diversity + - Botany + - Ecology + - Zoology + urls: + - https://eml.ecoinformatics.org/ + - https://eml.ecoinformatics.org/schema + - eml://eml.ecoinformatics.org/eml-2.0.0 + - eml://ecoinformatics.org/eml-2.0.0 + - eml://ecoinformatics.org/eml-2.0.1 + - eml://ecoinformatics.org/eml-2.1.0 + - eml://ecoinformatics.org/eml-2.1.1 + - https://eml.ecoinformatics.org/eml-2.2.0 + - https://eml.ecoinformatics.org/eml-2.2.1 + - https://eml.ecoinformatics.org/schema/eml_xsd +EPrints XML: + acronym: EPrints + field_of_science: + - sciences + id: eprints-xml + identifier: + - type: local + value: fuji:m23 + - type: namespace + value: http://eprints.org/ep2/data/2.0 + - type: homepage + value: https://wiki.eprints.org/w/XML_Export_Format + subject_areas: + - Multidisciplinary + urls: + - http://eprints.org/ep2/data/2.0 + - https://wiki.eprints.org/w/XML_Export_Format +ETD-MS an Interoperability Metadata Standard for Electronic Theses and Dissertations: + acronym: ETD-MS + field_of_science: + - sciences + id: etdms-metadata-schema + identifier: + - type: local + value: fuji:m17 + - type: local + value: https://fairsharing.org/4660 + - type: homepage + value: https://ndltd.org/metadata/ + - type: namespace + value: http://www.ndltd.org/standards/metadata/etdms/1.1/ + - type: namespace + value: http://www.ndltd.org/standards/metadata/etdms/1.0/ + - type: schema + value: http://www.ndltd.org/standards/metadata/etdms/1.1/etdms11.xsd + - type: schema + value: http://www.ndltd.org/standards/metadata/etdms/1.1/etdmsdc.xsd + - type: schema + value: http://www.ndltd.org/standards/metadata/etdms/1.1/etdmsdcterms.xsd + - type: schema + value: http://www.ndltd.org/standards/metadata/etdms/1.0/etdms.xsd + - type: namespace + value: http://www.ndltd.org/standards/metadata/etdms/1-0/ + subject_areas: + - Multidisciplinary + urls: + - https://ndltd.org/metadata/ + - http://www.ndltd.org/standards/metadata/etdms/1.1/ + - http://www.ndltd.org/standards/metadata/etdms/1.0/ + - http://www.ndltd.org/standards/metadata/etdms/1.1/etdms11.xsd + - http://www.ndltd.org/standards/metadata/etdms/1.1/etdmsdc.xsd + - http://www.ndltd.org/standards/metadata/etdms/1.1/etdmsdcterms.xsd + - http://www.ndltd.org/standards/metadata/etdms/1.0/etdms.xsd + - http://www.ndltd.org/standards/metadata/etdms/1-0/ +EURISCO Descriptors: + acronym: + field_of_science: [] + id: eurisco-descriptors + identifier: + - type: local + value: msc:m85 + - type: homepage + value: https://www.ecpgr.cgiar.org/resources/germplasm-databases/eurisco-catalogue + subject_areas: + urls: + - http://www.ecpgr.cgiar.org/fileadmin/templates/ecpgr.org/upload/MISC/EURISCO_Descriptors.pdf + - https://www.ecpgr.cgiar.org/resources/germplasm-databases/eurisco-catalogue +Emblem XML-Schema: + acronym: Emblem + field_of_science: + - humanities + id: emblem-metadata-schema + identifier: + - type: local + value: fuji:m16 + - type: local + value: https://fairsharing.org/4654 + - type: homepage + value: http://diglib.hab.de/rules/schema/emblem/ + - type: namespace + value: http://diglib.hab.de/rules/schema/emblem + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-3.xsd + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-2.xsd + subject_areas: + - Humanities + urls: + - http://diglib.hab.de/rules/schema/emblem/ + - http://diglib.hab.de/rules/schema/emblem + - http://diglib.hab.de/rules/schema/emblem/emblem-1-3.xsd + - http://diglib.hab.de/rules/schema/emblem/emblem-1-2.xsd +Europeana Data Model (EDM): + acronym: EDM + field_of_science: + - humanities + id: edm-europeana-data-model + identifier: + - type: local + value: fuji:m33 + - type: local + value: https://fairsharing.org/4653 + - type: homepage + value: https://pro.europeana.eu/page/edm-documentation + - type: namespace + value: http://www.europeana.eu/schemas/edm/ + - type: namespace + value: http://www.europeana.eu/schemas/edm + - type: namespace + value: http://www.europeana.eu/schemas/ese/ + subject_areas: + - Humanities + - Cultural heritage + urls: + - https://pro.europeana.eu/page/edm-documentation + - http://www.europeana.eu/schemas/edm/ + - http://www.europeana.eu/schemas/edm + - http://www.europeana.eu/schemas/ese/ +FGDC/CSDGM (Federal Geographic Data Committee Content Standard for Digital Geospatial Metadata): + acronym: fgdc + field_of_science: + - physical geography + - cartography + - oceanography + - marine biology + - social geography + - climatology + - meteorology + - hydrology + - social sciences + - biochemistry + - natural sciences + id: fgdccsdgm-federal-geographic-data-committee-content-standard-digital-ge + identifier: + - type: local + value: msc:m17 + - type: local + value: https://fairsharing.org/1445 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/fgdccsdgm-federal-geographic-data-committee-content-standard-digital-ge + - type: homepage + value: http://www.fgdc.gov/metadata/geospatial-metadata-standards/ + - type: schema + value: https://www.fgdc.gov/schemas/metadata/fgdc-std-001-1998.xsd + - type: schema + value: https://www.fgdc.gov/schemas/metadata/fgdc-std-001.2-2001.xsd + - type: namespace + value: https://www.fgdc.gov/schemas/metadata/ + - type: namespace + value: http://www.fgdc.gov/metadata/csdgm/index_html + subject_areas: + - Biochemistry + - Cartography + - Climatology + - Geography + - Hydrology + - Land use + - Marine biology + - Meteorology + - Oceanography + - Topography + urls: + - http://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/base-metadata/v2_0698.pdf + - http://www.fgdc.gov/metadata/geospatial-metadata-standards/ + - https://www.fgdc.gov/schemas/metadata/fgdc-std-001-1998.xsd + - https://www.fgdc.gov/schemas/metadata/fgdc-std-001.2-2001.xsd + - https://www.fgdc.gov/schemas/metadata/ + - http://www.fgdc.gov/metadata/csdgm/index_html +FGDC/CSDGM Biological Data Profile: + acronym: + field_of_science: + - biological sciences + - natural sciences + id: fgdccsdgm-biological-data-profile + identifier: + - type: local + value: msc:m59 + - type: homepage + value: http://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/biometadata/biodatap.pdf + subject_areas: + - Biogeography + urls: + - http://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/biometadata/biodatap.pdf +FITS (Flexible Image Transport System): + acronym: + field_of_science: + - astrophysics + - astronomy + - natural sciences + id: fits-flexible-image-transport-system + identifier: + - type: local + value: msc:m18 + - type: local + value: https://doi.org/10.25504/FAIRsharing.xvash1 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/fits-flexible-image-transport-system + - type: homepage + value: http://fits.gsfc.nasa.gov/fits_standard.html + subject_areas: + - Astronomy + - Astrophysics + - Sun + urls: + - http://fits.gsfc.nasa.gov/fits_standard.html + - http://fits.gsfc.nasa.gov/fits_standard.html +FITS World Coordinate System (WCS): + acronym: + field_of_science: + - astrophysics + - astronomy + - natural sciences + id: fits-world-coordinate-system-wcs + identifier: + - type: local + value: msc:m60 + - type: homepage + value: http://fits.gsfc.nasa.gov/fits_wcs.html + subject_areas: + - Astronomy + - Astrophysics + - Sun + urls: + - http://fits.gsfc.nasa.gov/fits_wcs.html +GBIF Metadata Profile: + acronym: + field_of_science: + - biological sciences + - zoology + - ecology + - botany + - natural sciences + id: gbif-metadata-profile + identifier: + - type: local + value: msc:m61 + - type: homepage + value: http://rs.gbif.org/schema/eml-gbif-profile/ + subject_areas: + - Biogeography + - Biological diversity + - Botany + - Ecology + - Zoology + urls: + - http://rs.gbif.org/schema/eml-gbif-profile/ + - http://rs.gbif.org/schema/eml-gbif-profile/1.0.2/eml-gbif-profile.xsd + - http://rs.gbif.org/schema/eml-gbif-profile/1.1/eml-gbif-profile.xsd +GESMES/TS (Generic Statistical Message for Time Series): + acronym: + field_of_science: + - economics + - statistics and probability + - social sciences + - political sciences + - natural sciences + id: gesmests-generic-statistical-message-time-series + identifier: + - type: local + value: msc:m62 + - type: homepage + value: http://www.ecb.int/stats/services/sdmx/html/index.en.html + subject_areas: + - Economics + - Social policy + - Statistics + urls: + - http://www.ecb.int/stats/services/sdmx/html/index.en.html +GSIM (Generic Statistical Information Model): + acronym: + field_of_science: + - statistics and probability + - natural sciences + id: gsim-generic-statistical-information-model + identifier: + - type: local + value: msc:m63 + - type: local + value: https://doi.org/10.25504/FAIRsharing.22bb25 + - type: homepage + value: http://www1.unece.org/stat/platform/display/metis/Generic+Statistical+Information+Model + subject_areas: + - Statistics + urls: + - http://www1.unece.org/stat/platform/display/metis/Generic+Statistical+Information+Model +Genome Metadata: + acronym: + field_of_science: + - genetics + - natural sciences + id: genome-metadata + identifier: + - type: local + value: msc:m19 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/genome-metadata + - type: homepage + value: http://enews.patricbrc.org/faqs/genome-metadata-faqs/ + subject_areas: + - Genetics + urls: + - http://enews.patricbrc.org/faqs/genome-metadata-faqs/ +GeoRSS: + acronym: + field_of_science: + - earth and related environmental sciences + - natural sciences + id: georss-encoding-standard + identifier: + - type: local + value: fuji:m1 + - type: local + value: https://fairsharing.org/4663 + - type: homepage + value: http://www.georss.org + - type: namespace + value: http://www.georss.org/georss/ + - type: namespace + value: http://schemas.opengis.net/georss/1.0/ + subject_areas: + - Earth sciences + urls: + - http://www.georss.org + - http://www.georss.org/georss/ + - http://schemas.opengis.net/georss/1.0/ +Geography Markup Language: + acronym: + field_of_science: + - earth and related environmental sciences + - cartography + - oceanography + - glaciology + - meteorology + - climatology + - geology + - hydrology + - physical geography + - hydrogeology + - natural sciences + id: iso-19136 + identifier: + - type: local + value: fuji:m3 + - type: local + value: https://doi.org/10.25504/FAIRsharing.d69ee0 + - type: homepage + value: www.iso.org/iso/iso_catalogue/catalogue_tc/catalogue_detail.htm?csnumber=32554 + - type: namespace + value: http://www.opengis.net/gml/3.2 + - type: namespace + value: http://schemas.opengis.net/gml/3.2.1/gml.xsd + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Geology + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Topography + urls: + - https://www.ogc.org/standards/gml + - www.iso.org/iso/iso_catalogue/catalogue_tc/catalogue_detail.htm?csnumber=32554 + - http://www.opengis.net/gml/3.2 + - http://schemas.opengis.net/gml/3.2.1/gml.xsd +HISPID (Herbarium Information Standards and Protocols for Interchange of Data): + acronym: + field_of_science: + - botany + - natural sciences + id: hispid-herbarium-information-standards-and-protocols-interchange-data + identifier: + - type: local + value: msc:m64 + - type: local + value: https://doi.org/10.25504/FAIRsharing.y49yj6 + - type: homepage + value: http://www.rbg.vic.gov.au/wiki/hiscom/index.php/HISPID_5 + subject_areas: + - Botany + urls: + - http://www.rbg.vic.gov.au/wiki/hiscom/index.php/HISPID_5 +IDF (International DOI Foundation) Metadata Kernel: + acronym: + field_of_science: [] + id: idf-international-doi-foundation-metadata-kernel + identifier: + - type: local + value: msc:m86 + - type: homepage + value: https://www.doi.org/the-identifier/resources/handbook/doi_kernel_xml_schema/ + - type: schema + value: https://www.doi.org/doi_schemas/DOIMetadataKernel.xsd + - type: namespace + value: http://www.doi.org/2010/DOISchema + subject_areas: + urls: + - https://www.doi.org/the-identifier/resources/handbook/doi_kernel_xml_schema/ + - https://www.doi.org/doi_schemas/DOIMetadataKernel.xsd + - http://www.doi.org/2010/DOISchema +IMDI Metadata Standard: + acronym: IMDI + field_of_science: + - humanities + - linguistics + id: imdi-metadata-schema + identifier: + - type: local + value: fuji:m15 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2cfb88 + - type: namespace + value: http://www.mpi.nl/IMDI/Schema/IMDI + - type: namespace + value: http://www.mpi.nl/IMDI/schemas/xsd/ + - type: schema + value: https://www.mpi.nl/IMDI/Schema/IMDI_3.0.xsd + - type: homepage + value: https://archive.mpi.nl/forums/t/imdi-metadata-information/2933 + subject_areas: + - Humanities + - Linguistics + urls: + - http://www.mpi.nl/IMDI/Schema/IMDI + - http://www.mpi.nl/IMDI/schemas/xsd/ + - https://www.mpi.nl/IMDI/Schema/IMDI_3.0.xsd + - https://archive.mpi.nl/forums/t/imdi-metadata-information/2933 +IMPEx Data Model: + acronym: + field_of_science: + - astronomy + - natural sciences + id: impex-data-model + identifier: + - type: local + value: msc:m65 + - type: homepage + value: http://meetingorganizer.copernicus.org/EPSC2012/EPSC2012-360.pdf + subject_areas: + - Astronomical systems + - Astronomy + - Sun + urls: + - http://meetingorganizer.copernicus.org/EPSC2012/EPSC2012-360.pdf +INSPIRE Metadata Regulation: + acronym: + field_of_science: + - earth and related environmental sciences + - cartography + - oceanography + - glaciology + - meteorology + - climatology + - hydrology + - physical geography + - hydrogeology + - natural sciences + id: inspire-metadata-regulation + identifier: + - type: local + value: msc:m66 + - type: local + value: https://doi.org/10.25504/FAIRsharing.nrx5kk + - type: homepage + value: http://inspire.ec.europa.eu/ + - type: namespace + value: http://inspire.ec.europa.eu/schemas/common/1.0/common.xsd + - type: namespace + value: http://inspire.ec.europa.eu/schemas/common/1.0/network.xsd + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Topography + urls: + - http://inspire.ec.europa.eu/ + - http://inspire.ec.europa.eu/schemas/common/1.0/common.xsd + - http://inspire.ec.europa.eu/schemas/common/1.0/network.xsd +ISA-TAB Nano: + acronym: + field_of_science: + - biochemistry + - biological sciences + - natural sciences + - engineering and technology + id: isa-tab-nano + identifier: + - type: local + value: msc:m67 + - type: local + value: https://doi.org/10.25504/FAIRsharing.njqq5b + - type: homepage + value: https://wiki.nci.nih.gov/display/ICR/ISA-TAB-Nano#ISA-TAB-Nano-title + subject_areas: + - Biochemicals + - Biotechnology + urls: + - https://wiki.nci.nih.gov/display/ICR/ISA-TAB-Nano#ISA-TAB-Nano-title +ISA-Tab: + acronym: + field_of_science: + - engineering and technology + - biological sciences + - genetics + - cell metabolism + - molecular biology + - cell biology + - biochemistry + - biophysics + - natural sciences + id: isa-tab + identifier: + - type: local + value: msc:m21 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/isa-tab + - type: homepage + value: http://isatab.sourceforge.net/format.html + subject_areas: + - Biochemicals + - Biochemistry + - Biophysics + - Biotechnology + - Cell biology + - Genetics + - Metabolism + - Molecular biology + urls: + - http://isatab.sourceforge.net/docs/ISA-TAB_release-candidate-1_v1.0_24nov08.pdf + - http://isatab.sourceforge.net/format.html +ISO 19115: + acronym: ISO19115 + field_of_science: + - earth and related environmental sciences + - cartography + - oceanography + - glaciology + - meteorology + - climatology + - geology + - hydrology + - physical geography + - hydrogeology + - natural sciences + id: iso-19115 + identifier: + - type: local + value: msc:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.t7mby9 + - type: homepage + value: http://www.iso.org/iso/catalogue_detail.htm?csnumber=53798 + - type: namespace + value: http://www.isotc211.org/2005/gmd/gmd.xsd + - type: namespace + value: http://www.isotc211.org/2005/gmd + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mds/2.0 + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mds/1.0 + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mdb/2.0 + - type: namespace + value: http://bluenet3.antcrc.utas.edu.au/mcp + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Geology + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Topography + urls: + - http://standards.iso.org/iso/19115/-3/ + - http://www.iso.org/iso/catalogue_detail.htm?csnumber=53798 + - http://www.isotc211.org/2005/gmd/gmd.xsd + - http://www.isotc211.org/2005/gmd + - http://standards.iso.org/iso/19115/-3/mds/2.0 + - http://standards.iso.org/iso/19115/-3/mds/1.0 + - http://standards.iso.org/iso/19115/-3/mdb/2.0 + - http://bluenet3.antcrc.utas.edu.au/mcp +ISO 19115 North American Profile: + acronym: + field_of_science: + - cartography + - physical geography + - natural sciences + id: iso-19115-north-american-profile + identifier: + - type: local + value: msc:m70 + - type: local + value: https://doi.org/10.25504/FAIRsharing.b4af3c + - type: homepage + value: http://www.fgdc.gov/standards/projects/incits-l1-standards-projects/NAP-Metadata + subject_areas: + - Cartography + - Geography + - Topography + urls: + - http://www.fgdc.gov/standards/projects/incits-l1-standards-projects/NAP-Metadata +ISO 19115-2 - Imagery and gridded data: + acronym: + field_of_science: + - earth and related environmental sciences + - cartography + - oceanography + - glaciology + - social geography + - climatology + - meteorology + - hydrology + - social sciences + - physical geography + - natural sciences + id: iso-19115-2-imagery-and-gridded-data + identifier: + - type: local + value: msc:m69 + - type: local + value: https://doi.org/10.25504/FAIRsharing.a6b18c + - type: homepage + value: http://www.iso.org/iso/catalogue_detail.htm?csnumber=39229 + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Glaciology + - Hydrology + - Land use + - Meteorology + - Oceanography + - Topography + urls: + - http://www.iso.org/iso/catalogue_detail.htm?csnumber=39229 +IVOA Registry Interfaces: + acronym: ivoa-reg + field_of_science: + - astronomy + - natural sciences + id: ivoa-registry-metdata + identifier: + - type: local + value: fuji:m35 + - type: local + value: https://doi.org/10.25504/FAIRsharing.RycpEU + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/international-virtual-observatory-alliance-technical-specifications + - type: namespace + value: http://www.ivoa.net/xml/VORegistry/v1.0 + - type: namespace + value: http://www.ivoa.net/xml/RegistryInterface/v1.0 + - type: homepage + value: https://www.ivoa.net/Documents/cover/RDFVORegistry-20070920.html + subject_areas: + - Astronomy + urls: + - https://www.ivoa.net/documents/RegistryInterface/20180723/REC-RegistryInterface-1.1.html + - http://www.ivoa.net/xml/VORegistry/v1.0 + - http://www.ivoa.net/xml/RegistryInterface/v1.0 + - https://www.ivoa.net/Documents/cover/RDFVORegistry-20070920.html +International Federation of Digital Seismograph Networks StationXML (FDSN StationXML): + acronym: + field_of_science: + - geophysics + - earth and related environmental sciences + - natural sciences + id: fdsn-seismograph + identifier: + - type: local + value: fuji:m8 + - type: local + value: https://fairsharing.org/1434 + - type: namespace + value: http://www.fdsn.org/xml/station/1 + - type: homepage + value: http://www.fdsn.org/xml/station/ + subject_areas: + - Earth sciences + - Geophysics + urls: + - http://www.fdsn.org/xml/station/1 + - http://www.fdsn.org/xml/station/ + - http://docs.fdsn.org/projects/stationxml/en/latest/ +International Virtual Observatory Alliance Technical Specifications: + acronym: IVOA + field_of_science: + - astronomy + - natural sciences + id: international-virtual-observatory-alliance-technical-specifications + identifier: + - type: local + value: msc:m20 + - type: homepage + value: http://ivoa.net/documents/ + subject_areas: + - Astronomy + urls: + - http://www.ivoa.net/documents/#specs + - http://ivoa.net/documents/ +Journal Publishing Tag Set (Jats): + acronym: jats + field_of_science: + - library sciences + - humanities + id: jats-schema + identifier: + - type: local + value: fuji:m41 + - type: local + value: https://doi.org/10.25504/FAIRsharing.smr0rh + - type: homepage + value: http://jats.nlm.nih.gov/publishing/ + - type: schema + value: https://jats.nlm.nih.gov/publishing/1.0/xsd/JATS-journalpublishing1.xsd + - type: namespace + value: http://jats.nlm.nih.gov/publishing/1.0 + subject_areas: + - Bibliographic standards + - Information/library standards + urls: + - http://jats.nlm.nih.gov/publishing/ + - https://jats.nlm.nih.gov/publishing/1.0/xsd/JATS-journalpublishing1.xsd + - http://jats.nlm.nih.gov/publishing/1.0 +LIDO, Lightweight Information Describing Objects: + acronym: LIDO + field_of_science: + - humanities + id: lido-lightweight-information-describing-objects + identifier: + - type: local + value: fuji:m18 + - type: local + value: https://doi.org/10.25504/FAIRsharing.73558b + - type: schema + value: www.lido-schema.org/schema/latest/lido.xsd + - type: schema + value: www.lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: schema + value: http://www.lido-schema.org/schema/v1.0/lido-v1.0.xsd + - type: schema + value: http://lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: namespace + value: http://www.lido-schema.org + - type: homepage + value: http://www.lido-schema.org + subject_areas: + - Humanities + - Cultural heritage + urls: + - www.lido-schema.org/schema/latest/lido.xsd + - www.lido-schema.org/schema/v1.1/lido-v1.1.xsd + - http://www.lido-schema.org/schema/v1.0/lido-v1.0.xsd + - http://lido-schema.org/schema/v1.1/lido-v1.1.xsd + - http://www.lido-schema.org + - http://www.lido-schema.org + - https://cidoc.mini.icom.museum/working-groups/lido/lido-overview/about-lido/what-is-lido/ +Learning Object Metadata (LOM): + acronym: LOM + field_of_science: [] + id: lom-higher-education-schema + identifier: + - type: local + value: fuji:m24 + - type: local + value: https://fairsharing.org/4664 + - type: homepage + value: http://www.imsglobal.org/metadata/index.html + - type: namespace + value: http://ltsc.ieee.org/xsd/LOMv1p0 + - type: namespace + value: http://ltsc.ieee.org/2002/09/lom-base# + - type: namespace + value: https://www.oerbw.de/hsoerlom + - type: schema + value: http://www.rdn.ac.uk/oai/lom/lom.xsd + - type: schema + value: https://w3id.org/kim/hs-oer-lom-profil/latest/schemas/hs-oer-lom.xsd + subject_areas: + urls: + - http://www.imsglobal.org/metadata/index.html + - https://dini-ag-kim.github.io/hs-oer-lom-profil/latest/ + - https://ieeexplore.ieee.org/document/1032843 + - http://ltsc.ieee.org/xsd/LOMv1p0 + - http://ltsc.ieee.org/2002/09/lom-base# + - https://www.oerbw.de/hsoerlom + - http://www.rdn.ac.uk/oai/lom/lom.xsd + - https://w3id.org/kim/hs-oer-lom-profil/latest/schemas/hs-oer-lom.xsd +MAGE-TAB: + acronym: + field_of_science: [] + id: mage-tab + identifier: + - type: local + value: msc:m87 + - type: local + value: https://fairsharing.org/4680 + - type: homepage + value: https://psidev.info/magetab + subject_areas: + urls: + - https://psidev.info/magetab +MARC (Machine-Readable Cataloging): + acronym: MARC + field_of_science: + - humanities + - sciences + - library sciences + id: marc-machine-readable-cataloging + identifier: + - type: local + value: msc:m88 + - type: local + value: https://doi.org/10.25504/FAIRsharing.217b1b + - type: homepage + value: http://www.loc.gov/marc/ + - type: schema + value: http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - type: schema + value: https://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - type: namespace + value: http://www.loc.gov/MARC21/slim + - type: namespace + value: http://www.ddb.de/professionell/MARC21/plus + subject_areas: + - Multidisciplinary + - Bibliographic standards + - Information/library standards + urls: + - http://www.loc.gov/marc/ + - http://www.loc.gov/marc/bibliographic/ + - http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - https://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - http://www.loc.gov/MARC21/slim + - http://www.ddb.de/professionell/MARC21/plus +METS - Metadata Encoding and Transmission Standard: + acronym: METS + field_of_science: + - sciences + id: mets-metadata-encoding-and-transmission-standard + identifier: + - type: local + value: fuji:m11 + - type: local + value: https://doi.org/10.25504/FAIRsharing.921056 + - type: namespace + value: http://www.loc.gov/METS/ + - type: schema + value: https://www.loc.gov/standards/mets/profile_docs/mets.profile.v1-2.xsd + - type: schema + value: https://www.loc.gov/standards/mets/profile_docs/mets.profile.v2-1.xsd + - type: schema + value: https://www.loc.gov/standards/mets/profile_docs/mets.profile.v2-0.xsd + - type: homepage + value: https://www.loc.gov/standards/mets/mets-profiles.html + subject_areas: + - Multidisciplinary + urls: + - http://www.loc.gov/METS/ + - https://www.loc.gov/standards/mets/profile_docs/mets.profile.v1-2.xsd + - https://www.loc.gov/standards/mets/profile_docs/mets.profile.v2-1.xsd + - https://www.loc.gov/standards/mets/profile_docs/mets.profile.v2-0.xsd + - https://www.loc.gov/standards/mets/mets-profiles.html +MIBBI (Minimum Information for Biological and Biomedical Investigations): + acronym: + field_of_science: + - engineering and technology + - biological sciences + - genetics + - cell metabolism + - cell biology + - computer and information sciences + - environmental sciences + - proteins + - biochemistry + - natural sciences + id: mibbi-minimum-information-biological-and-biomedical-investigations + identifier: + - type: local + value: msc:m23 + - type: local + value: https://fairsharing.org/3518 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/mibbi-minimum-information-biological-and-biomedical-investigations + - type: homepage + value: http://mibbi.sourceforge.net/portal.shtml + subject_areas: + - Biochemistry + - Biology + - Biotechnology + - Cell biology + - Computer applications + - Environmental sciences + - Genetics + - Metabolism + - Proteins + urls: + - http://mibbi.sourceforge.net/foundry.shtml + - http://mibbi.sourceforge.net/portal.shtml +MIDAS-Heritage: + acronym: MIDAS + field_of_science: + - architectural design + - humanities + - archaeology + - history + id: midas-heritage + identifier: + - type: local + value: msc:m24 + - type: local + value: https://doi.org/10.25504/FAIRsharing.q0hgq + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/midas-heritage + - type: homepage + value: http://www.english-heritage.org.uk/publications/midas-heritage/ + - type: namespace + value: http://www.heritage-standards.org/midas/schema/1.0 + subject_areas: + - Archaeology + - Architecture + - Cultural heritage + - Cultural property preservation + - History + urls: + - http://www.english-heritage.org.uk/content/publications/publicationsNew/guidelines-standards/midas-heritage/midas-heritage-2012-v1_1.pdf + - https://historicengland.org.uk/images-books/publications/midas-heritage/ + - http://www.english-heritage.org.uk/publications/midas-heritage/ + - http://www.heritage-standards.org/midas/schema/1.0 +MODS (Metadata Object Description Schema): + acronym: MODS + field_of_science: + - library sciences + - humanities + id: mods-metadata-object-description-schema + identifier: + - type: local + value: msc:m97 + - type: local + value: https://doi.org/10.25504/FAIRsharing.o67X7e + - type: homepage + value: http://www.loc.gov/standards/mods/ + - type: namespace + value: http://www.loc.gov/mods/v3 + - type: namespace + value: http://www.loc.gov/mods/ + subject_areas: + - Bibliographic standards + - Information/library standards + urls: + - http://www.loc.gov/standards/mods/ + - http://www.loc.gov/mods/v3 + - http://www.loc.gov/mods/ + - http://www.loc.gov/standards/mods/v3/mods-3-3.xsd + - http://www.loc.gov/standards/mods/mods-outline-3-4.html + - http://www.loc.gov/standards/mods/v3/mods-3-4.xsd + - http://www.loc.gov/standards/mods/mods-outline-3-5.html + - http://www.loc.gov/standards/mods/v3/mods-3-5.xsd + - http://www.loc.gov/standards/mods/mods-outline-3-6.html + - http://www.loc.gov/standards/mods/v3/mods-3-6.xsd + - http://www.loc.gov/standards/mods/mods-outline-3-7.html + - http://www.loc.gov/standards/mods/v3/mods-3-7.xsd +Metadata Schema for the Description of Language Resources: + acronym: META-SHARE + field_of_science: + - humanities + - linguistics + id: metashare-metadata + identifier: + - type: local + value: fuji:m12 + - type: local + value: https://fairsharing.org/4665 + - type: homepage + value: http://www.meta-share.org/p/93/Documentation#model + - type: namespace + value: http://www.ilsp.gr/META-XMLSchema + - type: namespace + value: http://w3id.org/meta-share/meta-share/ + subject_areas: + - Humanities + - Linguistics + urls: + - http://www.meta-share.org/p/93/Documentation#model + - http://www.ilsp.gr/META-XMLSchema + - http://w3id.org/meta-share/meta-share/ +NeXML: + acronym: + field_of_science: + - biological sciences + - natural sciences + id: nexml + identifier: + - type: local + value: fuji:m45 + - type: local + value: https://doi.org/10.25504/FAIRsharing.knrb06 + - type: homepage + value: http://www.nexusformat.org/ + - type: namespace + value: http://www.nexml.org/2009 + - type: schema + value: http://www.nexml.org/2009 ../xsd/nexml.xsd + subject_areas: + - Biology + urls: + - http://download.nexusformat.org/doc/html/ref_doc.html + - http://www.nexusformat.org/ + - http://www.nexml.org/2009 + - http://www.nexml.org/2009 ../xsd/nexml.xsd +NeXus: + acronym: + field_of_science: + - engineering and technology + - chemical sciences + - crystallography + - materials engineering + - natural sciences + id: nexus + identifier: + - type: local + value: msc:m25 + - type: local + value: https://doi.org/10.25504/FAIRsharing.eq2pdx + - type: homepage + value: http://www.nexusformat.org/ + subject_areas: + - Chemistry + - Crystallography + - Materials engineering + urls: + - http://download.nexusformat.org/doc/html/ref_doc.html + - http://www.nexusformat.org/ +NetCDF Attribute Convention for Dataset Discovery: + acronym: + field_of_science: [] + id: netcdf-attribute-convention-for-dataset-discovery + identifier: + - type: local + value: msc:m89 + - type: homepage + value: https://wiki.esipfed.org/Category:Attribute_Conventions_Dataset_Discovery + subject_areas: + urls: + - https://wiki.esipfed.org/Category:Attribute_Conventions_Dataset_Discovery +OAI-ORE (Open Archives Initiative Object Reuse and Exchange): + acronym: OAI-ORE + field_of_science: + - humanities + - social sciences + - history + - anthropology + - sciences + id: oai-ore-open-archives-initiative-object-reuse-and-exchange + identifier: + - type: local + value: msc:m26 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3mtaee + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/oai-ore-open-archives-initiative-object-reuse-and-exchange + - type: homepage + value: http://www.openarchives.org/ore/toc + - type: namespace + value: http://www.openarchives.org/ore/terms/ + subject_areas: + - Anthropology + - History + - Multidisciplinary + urls: + - http://www.openarchives.org/ore/ + - http://www.openarchives.org/ore/toc + - http://www.openarchives.org/ore/terms/ +OAI-RDF Schema: + acronym: oai-rdf + field_of_science: [] + id: oai-rdf-schema + identifier: + - type: local + value: fuji:m38 + - type: schema + value: http://www.openarchives.org/OAI/2.0/rdf.xsd + - type: namespace + value: http://www.openarchives.org/OAI/2.0/rdf/ + - type: namespace + value: https://api.aiscr.cz/schema/oai_rdf/ + - type: homepage + value: http://www.openarchives.org/OAI/2.0/rdf/ + subject_areas: + urls: + - http://www.openarchives.org/OAI/2.0/rdf.xsd + - http://www.openarchives.org/OAI/2.0/rdf/ + - https://api.aiscr.cz/schema/oai_rdf/ + - http://www.openarchives.org/OAI/2.0/rdf/ +OCLC PICA XML: + acronym: pica + field_of_science: [] + id: pica-metadata-schema + identifier: + - type: local + value: fuji:m37 + - type: local + value: https://fairsharing.org/4688 + - type: namespace + value: info:srw/schema/5/picaXML-v1.0 + - type: namespace + value: http://www.oclcpica.org/xmlns/ppxml-1.0 + - type: schema + value: http://www.oclcpica.org/xml/picaplus.xsd + - type: homepage + value: http://www.oclcpica.org + subject_areas: + urls: + - info:srw/schema/5/picaXML-v1.0 + - http://www.oclcpica.org/xmlns/ppxml-1.0 + - http://www.oclcpica.org/xml/picaplus.xsd + - http://www.oclcpica.org +ODAM Structural Metadata: + acronym: + field_of_science: [] + id: odam-datapackage + identifier: + - type: local + value: 10.25504/FAIRsharing.ld9wne + - type: homepage + value: + subject_areas: + - biochemistry + - molecular-biology + - metabolic-biochemistry + - biomaterials + - bioengineering + urls: + - https://inrae.github.io/ODAM/data-preparation/url +OLAC metadata: + acronym: OLAC + field_of_science: + - humanities + - linguistics + id: olac-metadata + identifier: + - type: local + value: fuji:m14 + - type: local + value: https://doi.org/10.25504/FAIRsharing.17fbae + - type: namespace + value: http://www.language-archives.org/OLAC/1.1/ + - type: schema + value: http://www.language-archives.org/OLAC/1.1/olac.xsd + - type: homepage + value: http://www.language-archives.org/OLAC + subject_areas: + - Humanities + - Linguistics + urls: + - http://www.language-archives.org/OLAC/1.1/ + - http://www.language-archives.org/OLAC/1.1/olac.xsd + - http://www.language-archives.org/OLAC +OME-TIFF (Open Microscopy Environment TIFF): + acronym: + field_of_science: + - agricultural sciences + - zoology + - cell biology + - plant protection + - botany + - physiology + - medical and health sciences + - veterinary sciences + - natural sciences + id: ome-tiff-open-microscopy-environment-tiff + identifier: + - type: local + value: msc:m73 + - type: local + value: https://doi.org/10.25504/FAIRsharing.cq8tg2 + - type: homepage + value: http://www.openmicroscopy.org/site/support/file-formats/ome-tiff + subject_areas: + - Animal diseases + - Cell biology + - Physiology + - Plant diseases + - Plant physiology + - Zoology + urls: + - http://www.openmicroscopy.org/site/support/file-formats/ome-tiff +OME-XML (Open Microscopy Environment XML): + acronym: + field_of_science: + - agricultural sciences + - zoology + - cell biology + - plant protection + - botany + - physiology + - medical and health sciences + - veterinary sciences + - natural sciences + id: ome-xml-open-microscopy-environment-xml + identifier: + - type: local + value: msc:m29 + - type: local + value: https://doi.org/10.25504/FAIRsharing.zk8p4g + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ome-xml-open-microscopy-environment-xml + - type: homepage + value: http://www.openmicroscopy.org/site/support/file-formats + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2016-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2015-01 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2013-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2012-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2011-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2010-04 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2010-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2009-09 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2008-09 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2008-02 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2007-06 + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2015-01/ome.xsd + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2013-06/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2012-06/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2011-06/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2010-04/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2010-06/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2009-09/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2008-09/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2008-02/index.html + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2007-06/index.html + subject_areas: + - Animal diseases + - Cell biology + - Physiology + - Plant diseases + - Plant physiology + - Zoology + urls: + - http://www.openmicroscopy.org/Schemas/ + - http://www.openmicroscopy.org/site/support/file-formats + - http://www.openmicroscopy.org/Schemas/OME/2016-06 + - http://www.openmicroscopy.org/Schemas/OME/2015-01 + - http://www.openmicroscopy.org/Schemas/OME/2013-06 + - http://www.openmicroscopy.org/Schemas/OME/2012-06 + - http://www.openmicroscopy.org/Schemas/OME/2011-06 + - http://www.openmicroscopy.org/Schemas/OME/2010-04 + - http://www.openmicroscopy.org/Schemas/OME/2010-06 + - http://www.openmicroscopy.org/Schemas/OME/2009-09 + - http://www.openmicroscopy.org/Schemas/OME/2008-09 + - http://www.openmicroscopy.org/Schemas/OME/2008-02 + - http://www.openmicroscopy.org/Schemas/OME/2007-06 + - http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd + - http://www.openmicroscopy.org/Schemas/OME/2015-01/ome.xsd + - http://www.openmicroscopy.org/Schemas/OME/2013-06/index.html + - http://www.openmicroscopy.org/Schemas/OME/2012-06/index.html + - http://www.openmicroscopy.org/Schemas/OME/2011-06/index.html + - http://www.openmicroscopy.org/Schemas/OME/2010-04/index.html + - http://www.openmicroscopy.org/Schemas/OME/2010-06/index.html + - http://www.openmicroscopy.org/Schemas/OME/2009-09/index.html + - http://www.openmicroscopy.org/Schemas/OME/2008-09/index.html + - http://www.openmicroscopy.org/Schemas/OME/2008-02/index.html + - http://www.openmicroscopy.org/Schemas/OME/2007-06/index.html +ONIX for Books Product Information Message: + acronym: onix + field_of_science: + - library sciences + - humanities + id: onix-metadata-schema + identifier: + - type: local + value: fuji:m42 + - type: local + value: https://fairsharing.org/4683 + - type: homepage + value: https://www.editeur.org/8/ONIX/ + - type: namespace + value: http://www.editeur.org/onix/2.1/short + - type: schema + value: http://www.editeur.org/onix/2.1/short/ONIX_BookProduct_Release2.1_short + subject_areas: + - Bibliographic standards + - Information/library standards + urls: + - https://www.editeur.org/8/ONIX/ + - https://www.editeur.org/files/ONIX%203/APPNOTE%20Describing%20e-books%20in%20ONIX.pdf + - http://www.editeur.org/onix/2.1/short + - http://www.editeur.org/onix/2.1/short/ONIX_BookProduct_Release2.1_short +Observ-OM: + acronym: + field_of_science: + - biological sciences + - natural sciences + id: observ-om + identifier: + - type: local + value: msc:m27 + - type: local + value: https://fairsharing.org/4682 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/observ-om + - type: homepage + value: http://www.molgenis.org/wiki/ObservStart + subject_areas: + - Biology + urls: + - http://www.molgenis.org/wiki/ObservStart +Observations and Measurements: + acronym: + field_of_science: + - engineering and technology + - chemical sciences + - meteorology + - geology + - remote sensing + - natural sciences + id: observations-and-measurements + identifier: + - type: local + value: msc:m28 + - type: local + value: https://doi.org/10.25504/FAIRsharing.4ehmy9 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/observations-and-measurements + - type: homepage + value: http://www.opengeospatial.org/standards/om + - type: namespace + value: http://schemas.opengis.net/om/2.0/ + - type: schema + value: https://schemas.opengis.net/om/2.0/observation.xsd + - type: schema + value: https://schemas.opengis.net/om/1.0.0/observation.xsd + - type: namespace + value: http://www.opengis.net/om/1.0 + subject_areas: + - Chemistry + - Geology + - Meteorology + - Remote sensing + urls: + - http://portal.opengeospatial.org/files/?artifact_id=41579 + - http://www.opengeospatial.org/standards/om + - http://schemas.opengis.net/om/2.0/ + - https://schemas.opengis.net/om/2.0/observation.xsd + - https://schemas.opengis.net/om/1.0.0/observation.xsd + - http://www.opengis.net/om/1.0 +Open Archive Initiative Dublin Core (OAI DC): + acronym: oai_dc + field_of_science: + - sciences + id: oai-dublin-core-schema + identifier: + - type: local + value: fuji:m44 + - type: local + value: https://doi.org/10.25504/FAIRsharing.0417cf + - type: namespace + value: https://resources.bepress.com/OAI/2.0/qualified-dublin-core/ + - type: schema + value: http://www.openarchives.org/OAI/2.0/oai_dc.xsd + - type: namespace + value: http://www.openarchives.org/OAI/2.0/oai_dc/ + - type: namespace + value: http://www.openarchives.org/OAI/2.0/oai_dc + - type: homepage + value: http://www.openarchives.org/OAI/openarchivesprotocol.html#dublincore + subject_areas: + - Multidisciplinary + urls: + - https://resources.bepress.com/OAI/2.0/qualified-dublin-core/ + - http://www.openarchives.org/OAI/2.0/oai_dc.xsd + - http://www.openarchives.org/OAI/2.0/oai_dc/ + - http://www.openarchives.org/OAI/2.0/oai_dc + - http://www.openarchives.org/OAI/openarchivesprotocol.html#dublincore +OpenAIRE Guidelines: + acronym: OpenAIRE_G + field_of_science: + - sciences + id: openaire-guidelines + identifier: + - type: local + value: msc:m92 + - type: local + value: https://doi.org/10.25504/FAIRsharing.123197 + - type: homepage + value: https://guidelines.openaire.eu/ + - type: schema + value: https://www.openaire.eu/schema/repo-lit/4.0/openaire.xsd + - type: namespace + value: http://namespace.openaire.eu/schema/oaire/ + - type: namespace + value: oai_openaire + - type: namespace + value: https://openaire.eu + subject_areas: + - Multidisciplinary + urls: + - https://guidelines.openaire.eu/ + - https://www.openaire.eu/schema/repo-lit/4.0/openaire.xsd + - http://namespace.openaire.eu/schema/oaire/ + - oai_openaire + - https://openaire.eu +OpenAIRE Research Graph: + acronym: OpenAIRE_RG + field_of_science: + - sciences + id: openaire-research-graph + identifier: + - type: local + value: fuji:m20 + - type: local + value: https://fairsharing.org/4684 + - type: namespace + value: http://namespace.openaire.eu/oaf + - type: schema + value: https://www.openaire.eu/schema/1.0/oaf-1.0.xsd + - type: homepage + value: https://graph.openaire.eu/ + subject_areas: + - Multidisciplinary + urls: + - http://namespace.openaire.eu/oaf + - https://www.openaire.eu/schema/latest/doc/oaf.html + - https://www.openaire.eu/schema/1.0/oaf-1.0.xsd + - https://graph.openaire.eu/ +OpenSearch: + acronym: + field_of_science: [] + id: opensearch + identifier: + - type: local + value: fuji:m2 + - type: local + value: https://fairsharing.org/4685 + - type: namespace + value: http://a9.com/-/spec/opensearch/1.1/ + - type: homepage + value: https://github.com/dewitt/opensearch + subject_areas: + urls: + - http://a9.com/-/spec/opensearch/1.1/ + - https://github.com/dewitt/opensearch +PDBx/mmCIF (Protein Data Bank Exchange Dictionary and the Macromolecular Crystallographic Information Framework): + acronym: + field_of_science: + - biological sciences + - chemical sciences + - molecular biology + - physical sciences + - computer and information sciences + - crystallography + - natural sciences + id: pdbx-mmcif + identifier: + - type: local + value: msc:m30 + - type: local + value: https://doi.org/10.25504/FAIRsharing.fd28en + - type: homepage + value: http://mmcif.wwpdb.org/ + subject_areas: + - Biology + - Chemistry + - Computer applications + - Crystallography + - Molecular biology + - Physics + urls: + - http://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v40.dic/Index/ + - http://mmcif.wwpdb.org/ +PREMIS: + acronym: premis + field_of_science: + - sciences + id: premis + identifier: + - type: local + value: msc:m31 + - type: local + value: https://doi.org/10.25504/FAIRsharing.27a0f4 + - type: homepage + value: http://www.loc.gov/standards/premis/ + - type: namespace + value: http://www.loc.gov/standards/premis + - type: schema + value: https://www.loc.gov/standards/premis/v3/premis-v3-0.xsd + - type: namespace + value: http://www.loc.gov/premis/v3 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-2.xsd + - type: namespace + value: info:lc/xmlns/premis-v2 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-3.xsd + - type: schema + value: https://www.loc.gov/standards/premis/v1/PREMIS-v1-1.xsd + - type: namespace + value: http://www.loc.gov/standards/premis/v1 + subject_areas: + - Multidisciplinary + urls: + - http://www.loc.gov/standards/premis/v3/premis-3-0-final.pdf + - http://www.loc.gov/standards/premis/ + - http://www.loc.gov/standards/premis + - https://www.loc.gov/standards/premis/v3/premis-v3-0.xsd + - http://www.loc.gov/premis/v3 + - https://www.loc.gov/standards/premis/v2/premis-v2-2.xsd + - info:lc/xmlns/premis-v2 + - https://www.loc.gov/standards/premis/v2/premis-v2-3.xsd + - https://www.loc.gov/standards/premis/v1/PREMIS-v1-1.xsd + - http://www.loc.gov/standards/premis/v1 +PRISM Publishing Requirements for Industry Standard Metadata: + acronym: PRISM + field_of_science: [] + id: prism-publishing-industry-standard-metadata + identifier: + - type: local + value: fuji:m27 + - type: local + value: https://fairsharing.org/4689 + - type: homepage + value: https://www.w3.org/Submission/prism + - type: namespace + value: http://prismstandard.org/namespaces/pam/0.0/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/1.2/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/2.0/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/2.1/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/3.0/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/1.2/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/2.0/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/1.0/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/2.1/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/3.0/ + - type: namespace + value: http://prismstandard.org/namespaces/pim/1.2/ + subject_areas: + urls: + - https://www.w3.org/Submission/prism + - http://prismstandard.org/namespaces/pam/0.0/ + - http://prismstandard.org/namespaces/pam/1.2/ + - http://prismstandard.org/namespaces/pam/2.0/ + - http://prismstandard.org/namespaces/pam/2.1/ + - http://prismstandard.org/namespaces/pam/3.0/ + - http://prismstandard.org/namespaces/basic/1.2/ + - http://prismstandard.org/namespaces/basic/2.0/ + - http://prismstandard.org/namespaces/basic/1.0/ + - http://prismstandard.org/namespaces/basic/2.1/ + - http://prismstandard.org/namespaces/basic/3.0/ + - http://prismstandard.org/namespaces/pim/1.2/ +PROV: + acronym: + field_of_science: + - sciences + id: prov + identifier: + - type: local + value: msc:m33 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/prov + - type: local + value: https://doi.org/10.25504/FAIRsharing.fe7cda + - type: homepage + value: http://www.w3.org/2001/sw/wiki/PROV + - type: schema + value: http://www.w3.org/ns/prov.xsd + - type: namespace + value: http://www.w3.org/ns/prov# + subject_areas: + - Multidisciplinary + urls: + - http://www.w3.org/TR/prov-overview/ + - http://www.w3.org/2001/sw/wiki/PROV + - http://www.w3.org/ns/prov.xsd + - http://www.w3.org/ns/prov# +Protocol Data Element Definitions: + acronym: + field_of_science: + - medical and health sciences + - clinical medicine + id: protocol-data-element-definitions + identifier: + - type: local + value: msc:m32 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/protocol-data-element-definitions + - type: local + value: https://doi.org/10.25504/FAIRsharing.7e962d + - type: homepage + value: http://clinicaltrials.gov/ct2/manage-recs/resources + - type: schema + value: https://prsinfo.clinicaltrials.gov/ProtocolRecordSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/prs + - type: schema + value: https://prsinfo.clinicaltrials.gov/RRSUploadSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/rrs + subject_areas: + - Clinical medicine + urls: + - http://prsinfo.clinicaltrials.gov/definitions.html + - http://clinicaltrials.gov/ct2/manage-recs/resources + - https://prsinfo.clinicaltrials.gov/ProtocolRecordSchema.xsd + - http://clinicaltrials.gov/prs + - https://prsinfo.clinicaltrials.gov/RRSUploadSchema.xsd + - http://clinicaltrials.gov/rrs +QuDEx (Qualitative Data Exchange Format): + acronym: + field_of_science: + - sciences + id: qudex-qualitative-data-exchange-format + identifier: + - type: local + value: msc:m34 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/qudex-qualitative-data-exchange-format + - type: local + value: https://doi.org/10.25504/FAIRsharing.d42cb9 + - type: homepage + value: http://www.data-archive.ac.uk/create-manage/projects/qudex?index=1 + - type: schema + value: https://dam.data-archive.ac.uk/standards/qudex_v03_01.xsd + - type: namespace + value: http://www.data-archive.ac.uk/dext/schema/draft + subject_areas: + - Multidisciplinary + urls: + - http://data-archive.ac.uk/create-manage/projects/qudex?index=1 + - http://www.data-archive.ac.uk/create-manage/projects/qudex?index=1 + - https://dam.data-archive.ac.uk/standards/qudex_v03_01.xsd + - http://www.data-archive.ac.uk/dext/schema/draft +QuakeML: + acronym: QuakeML + field_of_science: + - geophysics + - earth and related environmental sciences + - natural sciences + id: quakeml + identifier: + - type: local + value: fuji:m9 + - type: local + value: https://fairsharing.org/1444 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/2.0 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.2 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.1 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.0.1 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.0 + - type: homepage + value: https://quake.ethz.ch/quakeml + subject_areas: + - Earth sciences + - Geophysics + urls: + - http://quakeml.org/xmlns/quakeml/2.0 + - http://quakeml.org/xmlns/quakeml/1.2 + - http://quakeml.org/xmlns/quakeml/1.1 + - http://quakeml.org/xmlns/quakeml/1.0.1 + - http://quakeml.org/xmlns/quakeml/1.0 + - https://quake.ethz.ch/quakeml + - http://www.quakeml.org/ +Qualified Dublin Core: + acronym: QDC + field_of_science: + - sciences + id: dublin-core-qualified + identifier: + - type: local + value: fuji:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3nx7t + - type: homepage + value: https://www.dublincore.org/specifications/dublin-core/dcmes-qualifiers/ + - type: namespace + value: urn:dc:qdc:container + - type: namespace + value: figshare:oai:qdc + - type: namespace + value: http://naca.central.cranfield.ac.uk/ethos-oai/2.0/ + - type: namespace + value: http://ora.ox.ac.uk/oai-pmh/metadata-formats/solo_dc + - type: schema + value: https://cocoon.huma-num.fr/schemas/dcq.xsd + - type: namespace + value: http://crdo.risc.cnrs.fr/schemas/dcq/ + - type: namespace + value: http://oai.base-search.net/base_dc/ + - type: namespace + value: http://oai.base-search.net/base_dc + - type: schema + value: http://oai.base-search.net/base_dc/base_dc.xsd + subject_areas: + - Multidisciplinary + urls: + - https://www.dublincore.org/specifications/dublin-core/dcmes-qualifiers/ + - urn:dc:qdc:container + - figshare:oai:qdc + - http://naca.central.cranfield.ac.uk/ethos-oai/2.0/ + - http://ora.ox.ac.uk/oai-pmh/metadata-formats/solo_dc + - https://cocoon.huma-num.fr/schemas/dcq.xsd + - http://crdo.risc.cnrs.fr/schemas/dcq/ + - http://oai.base-search.net/base_dc/ + - http://oai.base-search.net/base_dc + - http://oai.base-search.net/base_dc/base_dc.xsd +RDF Data Cube Vocabulary: + acronym: + field_of_science: + - statistics and probability + - natural sciences + id: rdf-data-cube-vocabulary + identifier: + - type: local + value: msc:m35 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/rdf-data-cube-vocabulary + - type: local + value: https://doi.org/10.25504/FAIRsharing.c3b573 + - type: homepage + value: http://www.w3.org/TR/vocab-data-cube/ + - type: namespace + value: http://purl.org/linked-data/cube# + subject_areas: + - Statistics + urls: + - http://www.w3.org/TR/vocab-data-cube/ + - http://purl.org/linked-data/cube# +RIF-CS (Registry Interchange Format Ć¢ā‚¬ā€œ Collections and Services): + acronym: RIF-CS + field_of_science: + - sciences + id: rif-cs-registry-interchange-format-collections-and-services + identifier: + - type: local + value: msc:m98 + - type: local + value: https://doi.org/10.25504/FAIRsharing.reybx2 + - type: homepage + value: https://www.ands.org.au/online-services/rif-cs-schema + - type: schema + value: http://services.ands.org.au/documentation/rifcs/schema/registryObjects.xsd + - type: namespace + value: http://ands.org.au/standards/rif-cs/registryObjects + - type: namespace + value: https://ands.org.au/standards/rif-cs/registryObjects + subject_areas: + - Multidisciplinary + urls: + - https://www.ands.org.au/online-services/rif-cs-schema + - http://services.ands.org.au/documentation/rifcs/schemadocs/registryObjects.html + - http://services.ands.org.au/documentation/rifcs/schema/registryObjects.xsd + - http://ands.org.au/standards/rif-cs/registryObjects + - https://ands.org.au/standards/rif-cs/registryObjects +RIOXX Metadata Application Profile: + acronym: rioxx + field_of_science: + - sciences + id: rioxx-metadata-application-profile + identifier: + - type: local + value: fuji:m5 + - type: local + value: https://fairsharing.org/4690 + - type: namespace + value: http://www.rioxx.net/schema/v2.0/rioxx/ + - type: homepage + value: https://www.rioxx.net/ + - type: namespace + value: https://www.rioxx.net/schema/v2.0/rioxxterms/ + - type: namespace + value: http://docs.rioxx.net/schema/v1.0/ + subject_areas: + - Multidisciplinary + urls: + - http://www.rioxx.net/schema/v2.0/rioxx/ + - https://www.rioxx.net/ + - https://www.rioxx.net/schema/v2.0/rioxxterms/ + - http://docs.rioxx.net/schema/v1.0/ +RO-Crate: + acronym: + field_of_science: + - sciences + id: ro-crate + identifier: + - type: local + value: https://doi.org/10.25504/FAIRsharing.wUoZKE + - type: local + value: msc:m102 + - type: homepage + value: https://w3id.org/ro/crate + - type: namespace + value: https://w3id.org/ro/crate/1.1/context + - type: namespace + value: https://w3id.org/ro/crate/1.0/context + - type: namespace + value: https://w3id.org/ro/crate/0.2/context + subject_areas: + - Multidisciplinary + urls: + - https://w3id.org/ro/crate/1.1 + - https://w3id.org/ro/crate + - https://w3id.org/ro/crate/1.1/context + - https://w3id.org/ro/crate/1.0/context + - https://w3id.org/ro/crate/0.2/context +Resource Metadata for the Virtual Observatory: + acronym: + field_of_science: + - astronomy + - natural sciences + id: resource-metadata-virtual-observatory + identifier: + - type: local + value: msc:m74 + - type: local + value: https://doi.org/10.25504/FAIRsharing.qSULus + - type: homepage + value: http://www.ivoa.net/documents/latest/RM.html + subject_areas: + - Astronomy + urls: + - http://www.ivoa.net/documents/latest/RM.html +SDAC (Standard for Documentation of Astronomical Catalogues): + acronym: + field_of_science: + - astrophysics + - astronomy + - natural sciences + id: sdac + identifier: + - type: local + value: msc:m37 + - type: local + value: https://doi.org/10.25504/FAIRsharing.zcjkc7 + - type: homepage + value: http://cds.u-strasbg.fr/doc/catstd.htx + subject_areas: + - Astronomy + - Astrophysics + urls: + - http://cds.u-strasbg.fr/doc/catstd.pdf + - http://cds.u-strasbg.fr/doc/catstd.htx +SDMX (Statistical Data and Metadata Exchange): + acronym: + field_of_science: + - demography + - economics + - statistics and probability + - social geography + - social sciences + - political sciences + - natural sciences + id: sdmx-statistical-data-and-metadata-exchange + identifier: + - type: local + value: msc:m38 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/sdmx-statistical-data-and-metadata-exchange + - type: local + value: https://doi.org/10.25504/FAIRsharing.cea9zc + - type: homepage + value: http://sdmx.org + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/common + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/registry + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/structure + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/message + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/data + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/ + subject_areas: + - Demography + - Economics + - Human geography + - Social policy + - Statistics + urls: + - http://sdmx.org/?page_id=5008 + - http://sdmx.org + - http://www.sdmx.org/resources/sdmxml/schemas/v3_0/common + - http://www.sdmx.org/resources/sdmxml/schemas/v3_0/registry + - http://www.sdmx.org/resources/sdmxml/schemas/v3_0/structure + - http://www.sdmx.org/resources/sdmxml/schemas/v3_0/message + - http://www.sdmx.org/resources/sdmxml/schemas/v3_0/data + - http://www.sdmx.org/resources/sdmxml/ +SNRNASM ISA-Tab: + acronym: + field_of_science: + - biochemistry + - cell biology + - natural sciences + id: snrnasm-isa-tab + identifier: + - type: local + value: msc:m76 + - type: homepage + value: http://snrnasm.bio.unc.edu + subject_areas: + - Biochemistry + - Cell biology + urls: + - http://snrnasm.bio.unc.edu +SPASE Data Model: + acronym: + field_of_science: + - astronomy + - natural sciences + id: spase-data-model + identifier: + - type: local + value: msc:m39 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/spase-data-model + - type: local + value: https://doi.org/10.25504/FAIRsharing.f5d440 + - type: homepage + value: http://www.spase-group.org/data/ + - type: namespace + value: http://www.spase-group.org/data/schema + - type: schema + value: https://spase-group.org/data/schema/spase-1.0.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.1.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.2.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.2.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.2.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.3.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.0.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.1.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.3.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.4.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.6.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.8.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.9.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.5.0.xsd + subject_areas: + - Astronomical systems + - Astronomy + - Sun + urls: + - http://www.spase-group.org/docs/schema/ + - http://www.spase-group.org/data/ + - http://www.spase-group.org/data/schema + - https://spase-group.org/data/schema/spase-1.0.0.xsd + - https://spase-group.org/data/schema/spase-1.1.0.xsd + - https://spase-group.org/data/schema/spase-1.2.0.xsd + - https://spase-group.org/data/schema/spase-1.2.1.xsd + - https://spase-group.org/data/schema/spase-1.2.2.xsd + - https://spase-group.org/data/schema/spase-1.3.0.xsd + - https://spase-group.org/data/schema/spase-2.0.0.xsd + - https://spase-group.org/data/schema/spase-2.1.0.xsd + - https://spase-group.org/data/schema/spase-2.2.0.xsd + - https://spase-group.org/data/schema/spase-2.2.1.xsd + - https://spase-group.org/data/schema/spase-2.2.2.xsd + - https://spase-group.org/data/schema/spase-2.2.3.xsd + - https://spase-group.org/data/schema/spase-2.2.4.xsd + - https://spase-group.org/data/schema/spase-2.2.6.xsd + - https://spase-group.org/data/schema/spase-2.2.8.xsd + - https://spase-group.org/data/schema/spase-2.2.9.xsd + - https://spase-group.org/data/schema/spase-2.3.0.xsd + - https://spase-group.org/data/schema/spase-2.3.1.xsd + - https://spase-group.org/data/schema/spase-2.3.2.xsd + - https://spase-group.org/data/schema/spase-2.4.0.xsd + - https://spase-group.org/data/schema/spase-2.4.1.xsd + - https://spase-group.org/data/schema/spase-2.4.2.xsd + - https://spase-group.org/data/schema/spase-2.5.0.xsd + - http://www.spase-group.org/data/model/spase-2_2_2.pdf + - http://www.spase-group.org/data/model/spase-2_2_3.pdf + - http://www.spase-group.org/data/model/spase-2_2_4.pdf + - http://www.spase-group.org/data/model/spase-2_2_5.pdf + - http://www.spase-group.org/data/model/spase-2_2_6.pdf + - http://www.spase-group.org/data/model/spase-2_2_7.pdf + - http://www.spase-group.org/data/model/spase-2_2_9.pdf + - http://www.spase-group.org/data/model/spase-2_2_8.pdf +Schema.org: + acronym: schemaorg + field_of_science: + - sciences + id: schemaorg + identifier: + - type: local + value: https://doi.org/10.25504/FAIRsharing.hzdzq8 + - type: local + value: msc:m101 + - type: namespace + value: https://schema.org + - type: namespace + value: http://schema.org + - type: homepage + value: https://schema.org/docs/schemas.html + subject_areas: + - Multidisciplinary + urls: + - https://schema.org + - http://schema.org + - https://schema.org/docs/documents.html + - https://schema.org/docs/schemas.html +Shoreline Metadata Profile: + acronym: + field_of_science: + - oceanography + - natural sciences + - hydrology + id: shoreline-metadata-profile + identifier: + - type: local + value: msc:m75 + - type: local + value: https://doi.org/10.25504/FAIRsharing.22041b + - type: homepage + value: http://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/shoreline-metadata/ + subject_areas: + - Hydrology + - Oceanography + urls: + - http://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/shoreline-metadata/ +TEI (Text Encoding Initiative) Guidelines: + acronym: TEI + field_of_science: + - humanities + - languages and literature + - history + id: tei-text-encoding-initiative-guidelines + identifier: + - type: local + value: msc:m99 + - type: local + value: https://doi.org/10.25504/FAIRsharing.87b86e + - type: homepage + value: http://www.tei-c.org/Guidelines/P5/ + - type: namespace + value: http://www.tei-c.org/ns/1.0 + subject_areas: + - History + - Languages + urls: + - http://www.tei-c.org/Guidelines/P5/ + - https://www.tei-c.org/release/doc/tei-p5-doc/en/html/index.html + - http://www.tei-c.org/ns/1.0 +TIDCC (Towards an International Data Commons for Crystallography): + acronym: + field_of_science: + - crystallography + - natural sciences + id: tidcc-towards-international-data-commons-crystallography + identifier: + - type: local + value: msc:m78 + - type: local + value: https://fairsharing.org/208 + - type: homepage + value: http://wiki.ecrystals.chem.soton.ac.uk/images/9/9d/ECrystals-WP4-PM-Final.pdf + subject_areas: + - Crystallography + urls: + - http://wiki.ecrystals.chem.soton.ac.uk/images/9/9d/ECrystals-WP4-PM-Final.pdf +Tabular Data Package: + acronym: + field_of_science: + - sciences + id: tabular-data-package + identifier: + - type: local + value: msc:m77 + - type: local + value: https://doi.org/10.25504/FAIRsharing.082881 + - type: homepage + value: http://frictionlessdata.io/guides/tabular-data-package/ + subject_areas: + - Multidisciplinary + urls: + - http://frictionlessdata.io/guides/tabular-data-package/ +The Atom Syndication Format: + acronym: ATOM + field_of_science: + - sciences + id: atom-syndication-format + identifier: + - type: local + value: fuji:m13 + - type: local + value: https://fairsharing.org/4648 + - type: namespace + value: https://www.w3.org/2005/Atom + - type: namespace + value: http://www.w3.org/2005/Atom + - type: homepage + value: https://datatracker.ietf.org/wg/atompub/about/ + subject_areas: + - Multidisciplinary + urls: + - https://www.w3.org/2005/Atom + - http://www.w3.org/2005/Atom + - https://datatracker.ietf.org/wg/atompub/about/ + - https://datatracker.ietf.org/doc/html/rfc4287 +The Open Graph protocol metadata format: + acronym: OpenGraph + field_of_science: [] + id: opengraph + identifier: + - type: local + value: fuji:m46 + - type: homepage + value: https://ogp.me + - type: namespace + value: https://ogp.me/ns# + subject_areas: + urls: + - https://ogp.me + - https://ogp.me/ns# +The OpenURL ContextObject Format: + acronym: CTX + field_of_science: + - sciences + id: openurl-contextobject + identifier: + - type: local + value: fuji:m7 + - type: local + value: https://fairsharing.org/4686 + - type: namespace + value: info:ofi/fmt:xml:xsd:ctx + - type: namespace + value: info:ofi/fmt:kev:mtx:ctx + - type: homepage + value: https://www.oclc.org/research/activities/registry.html + subject_areas: + - Multidisciplinary + urls: + - info:ofi/fmt:xml:xsd:ctx + - info:ofi/fmt:kev:mtx:ctx + - https://groups.niso.org/apps/group_public/download.php/14833/z39_88_2004_r2010.pdf + - https://www.oclc.org/research/activities/registry.html +UK AGMAP (Academic Geospatial Metadata Application Profile): + acronym: + field_of_science: + - cartography + - physical geography + - natural sciences + id: uk-agmap-academic-geospatial-metadata-application-profile + identifier: + - type: local + value: msc:m79 + - type: homepage + value: http://www.gogeo.ac.uk/gogeo/metadata/agmap.htm + subject_areas: + - Cartography + - Geography + - Topography + urls: + - http://www.gogeo.ac.uk/gogeo/metadata/agmap.htm +UK Gemini: + acronym: + field_of_science: + - cartography + - physical geography + - natural sciences + id: uk-gemini + identifier: + - type: local + value: msc:m80 + - type: local + value: https://doi.org/10.25504/FAIRsharing.b49fab + - type: homepage + value: http://www.agi.org.uk/uk-gemini/ + subject_areas: + - Cartography + - Geography + - Topography + urls: + - http://www.agi.org.uk/uk-gemini/ +UKEOF: + acronym: + field_of_science: + - engineering and technology + - biological sciences + - meteorology + - climatology + - ecology + - geology + - hydrology + - remote sensing + - soil sciences + - natural sciences + id: ukeof + identifier: + - type: local + value: msc:m40 + - type: local + value: https://doi.org/10.25504/FAIRsharing.9xytp6 + - type: homepage + value: http://www.ukeof.org.uk/ + - type: schema + value: https://cataloguestaging.ukeof.org.uk/schema/ukeof.1.0.0.xsd + - type: schema + value: https://www.ukeof.org.uk/schema/1/UKEOF_v1.0.xsd + - type: namespace + value: http://www.ukeof.org.uk/schema/1 + subject_areas: + - Biogeography + - Biological diversity + - Climatology + - Ecology + - Geology + - Hydrology + - Meteorology + - Remote sensing + - Soil sciences + urls: + - http://schema.ukeof.org.uk/ + - http://www.ukeof.org.uk/ + - https://cataloguestaging.ukeof.org.uk/schema/ukeof.1.0.0.xsd + - https://www.ukeof.org.uk/schema/1/UKEOF_v1.0.xsd + - http://www.ukeof.org.uk/schema/1 +USGIN (US Geoscience Information Network) Metadata Profile: + acronym: + field_of_science: + - earth and related environmental sciences + - natural sciences + id: usgin-iso-profile + identifier: + - type: local + value: msc:m81 + - type: local + value: https://doi.org/10.25504/FAIRsharing.c82136 + - type: homepage + value: http://repository.stategeothermaldata.org/repository/resource/98ddf901b9782a25982e01af3b0bda50/ + subject_areas: + - Earth sciences + urls: + - http://repository.stategeothermaldata.org/repository/resource/98ddf901b9782a25982e01af3b0bda50/ + - http://usgin.github.io/usginspecs/USGIN_ISO_Metadata.htm +VarioML: + acronym: + field_of_science: + - genetics + - natural sciences + id: varioml + identifier: + - type: local + value: msc:m82 + - type: local + value: https://doi.org/10.25504/FAIRsharing.pxvkt0 + - type: homepage + value: http://www.ncbi.nlm.nih.gov/pubmed/23031277 + - type: namespace + value: http://varioml.org/xml/1.0 + subject_areas: + - Genetics + urls: + - http://www.ncbi.nlm.nih.gov/pubmed/23031277 + - http://varioml.org/xml/1.0 +WMO Core Metadata Profile: + acronym: + field_of_science: + - meteorology + - natural sciences + id: wmo-core-metadata-profile + identifier: + - type: local + value: msc:m84 + - type: local + value: https://doi.org/10.25504/FAIRsharing.5e7bdc + - type: homepage + value: https://wis.wmo.int/2012/metadata/ + subject_areas: + - Meteorology + urls: + - https://wis.wmo.int/2012/metadata/ +WaterML: + acronym: + field_of_science: + - natural sciences + - hydrology + id: waterml + identifier: + - type: local + value: msc:m83 + - type: local + value: https://doi.org/10.25504/FAIRsharing.e07e1b + - type: homepage + value: http://www.opengeospatial.org/standards/waterml + - type: schema + value: https://schemas.opengis.net/waterml/2.0/waterml2.xsd + - type: namespace + value: http://www.opengis.net/waterml/2.0 + subject_areas: + - Hydrology + urls: + - http://www.opengeospatial.org/standards/waterml + - https://schemas.opengis.net/waterml/2.0/waterml2.xsd + - http://www.opengis.net/waterml/2.0 +XOAI, a DSPACE Metadata Format: + acronym: XOAI + field_of_science: [] + id: xoai-metadata-format + identifier: + - type: local + value: fuji:m6 + - type: homepage + value: https://github.com/DSpace/xoai + - type: namespace + value: http://www.lyncode.com/xoai + subject_areas: + urls: + - https://github.com/DSpace/xoai + - http://www.lyncode.com/xoai +XmetaDiss: + acronym: xmetadiss + field_of_science: + - humanities + - sciences + - library sciences + id: xmetadiss-schema + identifier: + - type: local + value: fuji:m43 + - type: schema + value: https://d-nb.info/standards/schema/xmetadissplus.xsd + - type: namespace + value: http://www.d-nb.de/standards/xmetadissplus/ + - type: namespace + value: http://www.d-nb.de/standards/xMetaDiss/ + - type: homepage + value: http://www.d-nb.de/standards/xMetaDiss/ + subject_areas: + - Multidisciplinary + - Bibliographic standards + - Information/library standards + urls: + - https://d-nb.info/standards/schema/xmetadissplus.xsd + - http://www.d-nb.de/standards/xmetadissplus/ + - http://www.d-nb.de/standards/xMetaDiss/ + - http://www.d-nb.de/standards/xMetaDiss/ + - https://d-nb.info/1260521133/34 +dara_v2.2.1_de_en_19112012.xsd: + acronym: da|ra + field_of_science: + - political sciences + - social sciences + - sociology + id: dara-metadata-schema + identifier: + - type: local + value: fuji:m10 + - type: local + value: https://fairsharing.org/4651 + - type: namespace + value: http://da-ra.de/schema/kernel-4 + - type: schema + value: http://da-ra.de/dara/schemadefinitions/dara.xsd + - type: schema + value: dara_v2.2.1_de_en_19112012.xsd + - type: schema + value: http://www.da-ra.de/fileadmin/media/da-ra.de/Technik/dara_v3.1_de_en_18112014.xsd + - type: homepage + value: https://www.da-ra.de/downloads#metadata + subject_areas: + - Social policy + - Sociology + title: da|ra Metadata Schema +da|ra Metadata Schema: + acronym: da|ra + field_of_science: + - political sciences + - social sciences + - sociology + id: dara-metadata-schema + identifier: + - type: local + value: fuji:m10 + - type: local + value: https://fairsharing.org/4651 + - type: namespace + value: http://da-ra.de/schema/kernel-4 + - type: schema + value: http://da-ra.de/dara/schemadefinitions/dara.xsd + - type: schema + value: dara_v2.2.1_de_en_19112012.xsd + - type: schema + value: http://www.da-ra.de/fileadmin/media/da-ra.de/Technik/dara_v3.1_de_en_18112014.xsd + - type: homepage + value: https://www.da-ra.de/downloads#metadata + subject_areas: + - Social policy + - Sociology + urls: + - http://da-ra.de/schema/kernel-4 + - http://da-ra.de/dara/schemadefinitions/dara.xsd + - dara_v2.2.1_de_en_19112012.xsd + - http://www.da-ra.de/fileadmin/media/da-ra.de/Technik/dara_v3.1_de_en_18112014.xsd + - https://www.da-ra.de/downloads#version-3-0 + - https://www.da-ra.de/downloads#metadata +ddi:codebook:2_5: + acronym: DDI + field_of_science: + - public health + - demography + - law + - economics + - statistics and probability + - social geography + - sociology + - social sciences + - history + - medical and health sciences + - political sciences + - humanities + - natural sciences + id: ddi-data-documentation-initiative + identifier: + - type: local + value: msc:m13 + - type: local + value: https://doi.org/10.25504/FAIRsharing.1t5ws6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.EZCpPd + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - type: homepage + value: http://www.ddialliance.org/ + - type: namespace + value: http://www.icpsr.umich.edu/DDI + - type: schema + value: http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - type: namespace + value: ddi:codebook:2_5 + - type: namespace + value: ddi:dataset:3_3 + - type: namespace + value: ddi:dataset:3_2 + - type: namespace + value: ddi:dataset:3_1 + - type: namespace + value: ddi:instance:3_1 + - type: namespace + value: ddi:instance:3_2 + - type: namespace + value: ddi:instance:3_3 + - type: namespace + value: ddi:dataset:3_0 + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd + subject_areas: + - Demography + - Economics + - Health policy + - History + - Human geography + - Land use + - Law + - Politics + - Social policy + - Sociology + - Statistics + title: DDI (Data Documentation Initiative) +ddi:dataset:3_0: + acronym: DDI + field_of_science: + - public health + - demography + - law + - economics + - statistics and probability + - social geography + - sociology + - social sciences + - history + - medical and health sciences + - political sciences + - humanities + - natural sciences + id: ddi-data-documentation-initiative + identifier: + - type: local + value: msc:m13 + - type: local + value: https://doi.org/10.25504/FAIRsharing.1t5ws6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.EZCpPd + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - type: homepage + value: http://www.ddialliance.org/ + - type: namespace + value: http://www.icpsr.umich.edu/DDI + - type: schema + value: http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - type: namespace + value: ddi:codebook:2_5 + - type: namespace + value: ddi:dataset:3_3 + - type: namespace + value: ddi:dataset:3_2 + - type: namespace + value: ddi:dataset:3_1 + - type: namespace + value: ddi:instance:3_1 + - type: namespace + value: ddi:instance:3_2 + - type: namespace + value: ddi:instance:3_3 + - type: namespace + value: ddi:dataset:3_0 + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd + subject_areas: + - Demography + - Economics + - Health policy + - History + - Human geography + - Land use + - Law + - Politics + - Social policy + - Sociology + - Statistics + title: DDI (Data Documentation Initiative) +ddi:dataset:3_1: + acronym: DDI + field_of_science: + - public health + - demography + - law + - economics + - statistics and probability + - social geography + - sociology + - social sciences + - history + - medical and health sciences + - political sciences + - humanities + - natural sciences + id: ddi-data-documentation-initiative + identifier: + - type: local + value: msc:m13 + - type: local + value: https://doi.org/10.25504/FAIRsharing.1t5ws6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.EZCpPd + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - type: homepage + value: http://www.ddialliance.org/ + - type: namespace + value: http://www.icpsr.umich.edu/DDI + - type: schema + value: http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - type: namespace + value: ddi:codebook:2_5 + - type: namespace + value: ddi:dataset:3_3 + - type: namespace + value: ddi:dataset:3_2 + - type: namespace + value: ddi:dataset:3_1 + - type: namespace + value: ddi:instance:3_1 + - type: namespace + value: ddi:instance:3_2 + - type: namespace + value: ddi:instance:3_3 + - type: namespace + value: ddi:dataset:3_0 + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd + subject_areas: + - Demography + - Economics + - Health policy + - History + - Human geography + - Land use + - Law + - Politics + - Social policy + - Sociology + - Statistics + title: DDI (Data Documentation Initiative) +ddi:dataset:3_2: + acronym: DDI + field_of_science: + - public health + - demography + - law + - economics + - statistics and probability + - social geography + - sociology + - social sciences + - history + - medical and health sciences + - political sciences + - humanities + - natural sciences + id: ddi-data-documentation-initiative + identifier: + - type: local + value: msc:m13 + - type: local + value: https://doi.org/10.25504/FAIRsharing.1t5ws6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.EZCpPd + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - type: homepage + value: http://www.ddialliance.org/ + - type: namespace + value: http://www.icpsr.umich.edu/DDI + - type: schema + value: http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - type: namespace + value: ddi:codebook:2_5 + - type: namespace + value: ddi:dataset:3_3 + - type: namespace + value: ddi:dataset:3_2 + - type: namespace + value: ddi:dataset:3_1 + - type: namespace + value: ddi:instance:3_1 + - type: namespace + value: ddi:instance:3_2 + - type: namespace + value: ddi:instance:3_3 + - type: namespace + value: ddi:dataset:3_0 + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd + subject_areas: + - Demography + - Economics + - Health policy + - History + - Human geography + - Land use + - Law + - Politics + - Social policy + - Sociology + - Statistics + title: DDI (Data Documentation Initiative) +ddi:dataset:3_3: + acronym: DDI + field_of_science: + - public health + - demography + - law + - economics + - statistics and probability + - social geography + - sociology + - social sciences + - history + - medical and health sciences + - political sciences + - humanities + - natural sciences + id: ddi-data-documentation-initiative + identifier: + - type: local + value: msc:m13 + - type: local + value: https://doi.org/10.25504/FAIRsharing.1t5ws6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.EZCpPd + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - type: homepage + value: http://www.ddialliance.org/ + - type: namespace + value: http://www.icpsr.umich.edu/DDI + - type: schema + value: http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - type: namespace + value: ddi:codebook:2_5 + - type: namespace + value: ddi:dataset:3_3 + - type: namespace + value: ddi:dataset:3_2 + - type: namespace + value: ddi:dataset:3_1 + - type: namespace + value: ddi:instance:3_1 + - type: namespace + value: ddi:instance:3_2 + - type: namespace + value: ddi:instance:3_3 + - type: namespace + value: ddi:dataset:3_0 + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd + subject_areas: + - Demography + - Economics + - Health policy + - History + - Human geography + - Land use + - Law + - Politics + - Social policy + - Sociology + - Statistics + title: DDI (Data Documentation Initiative) +ddi:instance:3_1: + acronym: DDI + field_of_science: + - public health + - demography + - law + - economics + - statistics and probability + - social geography + - sociology + - social sciences + - history + - medical and health sciences + - political sciences + - humanities + - natural sciences + id: ddi-data-documentation-initiative + identifier: + - type: local + value: msc:m13 + - type: local + value: https://doi.org/10.25504/FAIRsharing.1t5ws6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.EZCpPd + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - type: homepage + value: http://www.ddialliance.org/ + - type: namespace + value: http://www.icpsr.umich.edu/DDI + - type: schema + value: http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - type: namespace + value: ddi:codebook:2_5 + - type: namespace + value: ddi:dataset:3_3 + - type: namespace + value: ddi:dataset:3_2 + - type: namespace + value: ddi:dataset:3_1 + - type: namespace + value: ddi:instance:3_1 + - type: namespace + value: ddi:instance:3_2 + - type: namespace + value: ddi:instance:3_3 + - type: namespace + value: ddi:dataset:3_0 + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd + subject_areas: + - Demography + - Economics + - Health policy + - History + - Human geography + - Land use + - Law + - Politics + - Social policy + - Sociology + - Statistics + title: DDI (Data Documentation Initiative) +ddi:instance:3_2: + acronym: DDI + field_of_science: + - public health + - demography + - law + - economics + - statistics and probability + - social geography + - sociology + - social sciences + - history + - medical and health sciences + - political sciences + - humanities + - natural sciences + id: ddi-data-documentation-initiative + identifier: + - type: local + value: msc:m13 + - type: local + value: https://doi.org/10.25504/FAIRsharing.1t5ws6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.EZCpPd + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - type: homepage + value: http://www.ddialliance.org/ + - type: namespace + value: http://www.icpsr.umich.edu/DDI + - type: schema + value: http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - type: namespace + value: ddi:codebook:2_5 + - type: namespace + value: ddi:dataset:3_3 + - type: namespace + value: ddi:dataset:3_2 + - type: namespace + value: ddi:dataset:3_1 + - type: namespace + value: ddi:instance:3_1 + - type: namespace + value: ddi:instance:3_2 + - type: namespace + value: ddi:instance:3_3 + - type: namespace + value: ddi:dataset:3_0 + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd + subject_areas: + - Demography + - Economics + - Health policy + - History + - Human geography + - Land use + - Law + - Politics + - Social policy + - Sociology + - Statistics + title: DDI (Data Documentation Initiative) +ddi:instance:3_3: + acronym: DDI + field_of_science: + - public health + - demography + - law + - economics + - statistics and probability + - social geography + - sociology + - social sciences + - history + - medical and health sciences + - political sciences + - humanities + - natural sciences + id: ddi-data-documentation-initiative + identifier: + - type: local + value: msc:m13 + - type: local + value: https://doi.org/10.25504/FAIRsharing.1t5ws6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.EZCpPd + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - type: homepage + value: http://www.ddialliance.org/ + - type: namespace + value: http://www.icpsr.umich.edu/DDI + - type: schema + value: http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - type: namespace + value: ddi:codebook:2_5 + - type: namespace + value: ddi:dataset:3_3 + - type: namespace + value: ddi:dataset:3_2 + - type: namespace + value: ddi:dataset:3_1 + - type: namespace + value: ddi:instance:3_1 + - type: namespace + value: ddi:instance:3_2 + - type: namespace + value: ddi:instance:3_3 + - type: namespace + value: ddi:dataset:3_0 + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Codebook/2.1/XMLSchema/codebook.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.2/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.1/XMLSchema/instance.xsd + - type: schema + value: https://ddialliance.org/Specification/DDI-Lifecycle/3.0/XMLSchema/instance.xsd + subject_areas: + - Demography + - Economics + - Health policy + - History + - Human geography + - Land use + - Law + - Politics + - Social policy + - Sociology + - Statistics + title: DDI (Data Documentation Initiative) +eBank UK Metadata Application Profile: + acronym: + field_of_science: + - crystallography + - natural sciences + id: ebank-uk-metadata-application-profile + identifier: + - type: local + value: msc:m57 + - type: local + value: https://doi.org/10.25504/FAIRsharing.ad4856 + - type: homepage + value: http://ecrystals.chem.soton.ac.uk + - type: schema + value: http://naca.central.cranfield.ac.uk/ethos-oai/2.0/uketd_dc.xsd + - type: namespace + value: http://naca.central.cranfield.ac.uk/ethos-oai/uketd_dc/ + subject_areas: + - Crystallography + urls: + - http://ecrystals.chem.soton.ac.uk + - http://naca.central.cranfield.ac.uk/ethos-oai/2.0/uketd_dc.xsd + - http://naca.central.cranfield.ac.uk/ethos-oai/uketd_dc/ +eml://ecoinformatics.org/eml-2.0.0: + acronym: EML + field_of_science: + - biological sciences + - zoology + - ecology + - botany + - natural sciences + id: eml-ecological-metadata-language + identifier: + - type: local + value: msc:m16 + - type: local + value: https://doi.org/10.25504/FAIRsharing.r3vtvx + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/eml-ecological-metadata-language + - type: homepage + value: https://eml.ecoinformatics.org/ + - type: namespace + value: eml://eml.ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.1 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.1 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.0 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.1 + - type: schema + value: https://eml.ecoinformatics.org/schema/eml_xsd + subject_areas: + - Biological diversity + - Botany + - Ecology + - Zoology + title: EML (Ecological Metadata Language) +eml://ecoinformatics.org/eml-2.0.1: + acronym: EML + field_of_science: + - biological sciences + - zoology + - ecology + - botany + - natural sciences + id: eml-ecological-metadata-language + identifier: + - type: local + value: msc:m16 + - type: local + value: https://doi.org/10.25504/FAIRsharing.r3vtvx + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/eml-ecological-metadata-language + - type: homepage + value: https://eml.ecoinformatics.org/ + - type: namespace + value: eml://eml.ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.1 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.1 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.0 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.1 + - type: schema + value: https://eml.ecoinformatics.org/schema/eml_xsd + subject_areas: + - Biological diversity + - Botany + - Ecology + - Zoology + title: EML (Ecological Metadata Language) +eml://ecoinformatics.org/eml-2.1.0: + acronym: EML + field_of_science: + - biological sciences + - zoology + - ecology + - botany + - natural sciences + id: eml-ecological-metadata-language + identifier: + - type: local + value: msc:m16 + - type: local + value: https://doi.org/10.25504/FAIRsharing.r3vtvx + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/eml-ecological-metadata-language + - type: homepage + value: https://eml.ecoinformatics.org/ + - type: namespace + value: eml://eml.ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.1 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.1 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.0 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.1 + - type: schema + value: https://eml.ecoinformatics.org/schema/eml_xsd + subject_areas: + - Biological diversity + - Botany + - Ecology + - Zoology + title: EML (Ecological Metadata Language) +eml://ecoinformatics.org/eml-2.1.1: + acronym: EML + field_of_science: + - biological sciences + - zoology + - ecology + - botany + - natural sciences + id: eml-ecological-metadata-language + identifier: + - type: local + value: msc:m16 + - type: local + value: https://doi.org/10.25504/FAIRsharing.r3vtvx + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/eml-ecological-metadata-language + - type: homepage + value: https://eml.ecoinformatics.org/ + - type: namespace + value: eml://eml.ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.1 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.1 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.0 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.1 + - type: schema + value: https://eml.ecoinformatics.org/schema/eml_xsd + subject_areas: + - Biological diversity + - Botany + - Ecology + - Zoology + title: EML (Ecological Metadata Language) +eml://eml.ecoinformatics.org/eml-2.0.0: + acronym: EML + field_of_science: + - biological sciences + - zoology + - ecology + - botany + - natural sciences + id: eml-ecological-metadata-language + identifier: + - type: local + value: msc:m16 + - type: local + value: https://doi.org/10.25504/FAIRsharing.r3vtvx + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/eml-ecological-metadata-language + - type: homepage + value: https://eml.ecoinformatics.org/ + - type: namespace + value: eml://eml.ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.0.1 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.0 + - type: namespace + value: eml://ecoinformatics.org/eml-2.1.1 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.0 + - type: namespace + value: https://eml.ecoinformatics.org/eml-2.2.1 + - type: schema + value: https://eml.ecoinformatics.org/schema/eml_xsd + subject_areas: + - Biological diversity + - Botany + - Ecology + - Zoology + title: EML (Ecological Metadata Language) +figshare:oai:qdc: + acronym: QDC + field_of_science: + - sciences + id: dublin-core-qualified + identifier: + - type: local + value: fuji:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3nx7t + - type: homepage + value: https://www.dublincore.org/specifications/dublin-core/dcmes-qualifiers/ + - type: namespace + value: urn:dc:qdc:container + - type: namespace + value: figshare:oai:qdc + - type: namespace + value: http://naca.central.cranfield.ac.uk/ethos-oai/2.0/ + - type: namespace + value: http://ora.ox.ac.uk/oai-pmh/metadata-formats/solo_dc + - type: schema + value: https://cocoon.huma-num.fr/schemas/dcq.xsd + - type: namespace + value: http://crdo.risc.cnrs.fr/schemas/dcq/ + - type: namespace + value: http://oai.base-search.net/base_dc/ + - type: namespace + value: http://oai.base-search.net/base_dc + - type: schema + value: http://oai.base-search.net/base_dc/base_dc.xsd + subject_areas: + - Multidisciplinary + title: Qualified Dublin Core +ftp://ftp.loc.gov/pub/ead/ead.dtd: + acronym: ead + field_of_science: + - humanities + - history + id: ead-encoded-archival-description + identifier: + - type: local + value: msc:m96 + - type: local + value: https://doi.org/10.25504/FAIRsharing.95f59a + - type: homepage + value: https://www.loc.gov/ead/ + - type: namespace + value: urn:isbn:1-931666-22-9 + - type: namespace + value: http://ead3.archivists.org/schema + - type: namespace + value: http://ead3.archivists.org/schema/ + subject_areas: + - History + title: EAD (Encoded Archival Description) +https://ogp.me: + acronym: OpenGraph + field_of_science: [] + id: opengraph + identifier: + - type: local + value: fuji:m46 + - type: homepage + value: https://ogp.me + - type: namespace + value: https://ogp.me/ns# + subject_areas: + title: The Open Graph protocol metadata format +http://a9.com/-/spec/opensearch/1.1/: + acronym: + field_of_science: [] + id: opensearch + identifier: + - type: local + value: fuji:m2 + - type: local + value: https://fairsharing.org/4685 + - type: namespace + value: http://a9.com/-/spec/opensearch/1.1/ + - type: homepage + value: https://github.com/dewitt/opensearch + subject_areas: + title: OpenSearch +http://aims.fao.org/es/standards/agmes/namespace-specification: + acronym: AgMES + field_of_science: + - agricultural sciences + - agriculture + - animal and dairy science + - fisheries + id: agmes-agricultural-metadata-element-set + identifier: + - type: local + value: msc:m2 + - type: local + value: https://doi.org/10.25504/FAIRsharing.vd694s + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/agmes-agricultural-metadata-element-set + - type: homepage + value: http://aims.fao.org/standards/agmes + - type: namespace + value: http://purl.org/agmes/1.1/ + subject_areas: + - Agricultural economics + - Agriculture + - Aquaculture + - Livestock + title: AgMES (Agricultural Metadata Element Set) +http://aims.fao.org/standards/agmes: + acronym: AgMES + field_of_science: + - agricultural sciences + - agriculture + - animal and dairy science + - fisheries + id: agmes-agricultural-metadata-element-set + identifier: + - type: local + value: msc:m2 + - type: local + value: https://doi.org/10.25504/FAIRsharing.vd694s + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/agmes-agricultural-metadata-element-set + - type: homepage + value: http://aims.fao.org/standards/agmes + - type: namespace + value: http://purl.org/agmes/1.1/ + subject_areas: + - Agricultural economics + - Agriculture + - Aquaculture + - Livestock + title: AgMES (Agricultural Metadata Element Set) +http://amf.openlib.org: + acronym: AMF + field_of_science: + - sciences + id: amf-academic-metadata-format + identifier: + - type: local + value: fuji:m25 + - type: local + value: https://fairsharing.org/4646 + - type: namespace + value: http://amf.openlib.org + - type: homepage + value: http://amf.openlib.org + - type: schema + value: http://amf.openlib.org/2001/amf.xsd + subject_areas: + - Multidisciplinary + title: Academic Metadata Format +http://amf.openlib.org/2001/amf.xsd: + acronym: AMF + field_of_science: + - sciences + id: amf-academic-metadata-format + identifier: + - type: local + value: fuji:m25 + - type: local + value: https://fairsharing.org/4646 + - type: namespace + value: http://amf.openlib.org + - type: homepage + value: http://amf.openlib.org + - type: schema + value: http://amf.openlib.org/2001/amf.xsd + subject_areas: + - Multidisciplinary + title: Academic Metadata Format +http://ands.org.au/standards/rif-cs/registryObjects: + acronym: RIF-CS + field_of_science: + - sciences + id: rif-cs-registry-interchange-format-collections-and-services + identifier: + - type: local + value: msc:m98 + - type: local + value: https://doi.org/10.25504/FAIRsharing.reybx2 + - type: homepage + value: https://www.ands.org.au/online-services/rif-cs-schema + - type: schema + value: http://services.ands.org.au/documentation/rifcs/schema/registryObjects.xsd + - type: namespace + value: http://ands.org.au/standards/rif-cs/registryObjects + - type: namespace + value: https://ands.org.au/standards/rif-cs/registryObjects + subject_areas: + - Multidisciplinary + title: RIF-CS (Registry Interchange Format Ć¢ā‚¬ā€œ Collections and Services) +http://ariadne-registry.dcu.gr/: + acronym: ACDM + field_of_science: + - humanities + - archaeology + id: ariadne-dataset-catalogue-model + identifier: + - type: local + value: fuji:m19 + - type: local + value: https://fairsharing.org/4647 + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - type: namespace + value: http://registry.ariadne-infrastructure.eu/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/ + - type: namespace + value: http://ariadne-registry.dcu.gr/schema-definition + - type: homepage + value: http://ariadne-registry.dcu.gr/ + subject_areas: + - Archaeology + title: ARIADNE Dataset Catalogue Model (ACDM) +http://ariadne-registry.dcu.gr/schema-definition: + acronym: ACDM + field_of_science: + - humanities + - archaeology + id: ariadne-dataset-catalogue-model + identifier: + - type: local + value: fuji:m19 + - type: local + value: https://fairsharing.org/4647 + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - type: namespace + value: http://registry.ariadne-infrastructure.eu/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/ + - type: namespace + value: http://ariadne-registry.dcu.gr/schema-definition + - type: homepage + value: http://ariadne-registry.dcu.gr/ + subject_areas: + - Archaeology + title: ARIADNE Dataset Catalogue Model (ACDM) +http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd: + acronym: ACDM + field_of_science: + - humanities + - archaeology + id: ariadne-dataset-catalogue-model + identifier: + - type: local + value: fuji:m19 + - type: local + value: https://fairsharing.org/4647 + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - type: namespace + value: http://registry.ariadne-infrastructure.eu/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/ + - type: namespace + value: http://ariadne-registry.dcu.gr/schema-definition + - type: homepage + value: http://ariadne-registry.dcu.gr/ + subject_areas: + - Archaeology + title: ARIADNE Dataset Catalogue Model (ACDM) +http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd: + acronym: ACDM + field_of_science: + - humanities + - archaeology + id: ariadne-dataset-catalogue-model + identifier: + - type: local + value: fuji:m19 + - type: local + value: https://fairsharing.org/4647 + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - type: namespace + value: http://registry.ariadne-infrastructure.eu/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/ + - type: namespace + value: http://ariadne-registry.dcu.gr/schema-definition + - type: homepage + value: http://ariadne-registry.dcu.gr/ + subject_areas: + - Archaeology + title: ARIADNE Dataset Catalogue Model (ACDM) +http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd: + acronym: ACDM + field_of_science: + - humanities + - archaeology + id: ariadne-dataset-catalogue-model + identifier: + - type: local + value: fuji:m19 + - type: local + value: https://fairsharing.org/4647 + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - type: namespace + value: http://registry.ariadne-infrastructure.eu/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/ + - type: namespace + value: http://ariadne-registry.dcu.gr/schema-definition + - type: homepage + value: http://ariadne-registry.dcu.gr/ + subject_areas: + - Archaeology + title: ARIADNE Dataset Catalogue Model (ACDM) +http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd: + acronym: ACDM + field_of_science: + - humanities + - archaeology + id: ariadne-dataset-catalogue-model + identifier: + - type: local + value: fuji:m19 + - type: local + value: https://fairsharing.org/4647 + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - type: namespace + value: http://registry.ariadne-infrastructure.eu/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/ + - type: namespace + value: http://ariadne-registry.dcu.gr/schema-definition + - type: homepage + value: http://ariadne-registry.dcu.gr/ + subject_areas: + - Archaeology + title: ARIADNE Dataset Catalogue Model (ACDM) +http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd: + acronym: ACDM + field_of_science: + - humanities + - archaeology + id: ariadne-dataset-catalogue-model + identifier: + - type: local + value: fuji:m19 + - type: local + value: https://fairsharing.org/4647 + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - type: namespace + value: http://registry.ariadne-infrastructure.eu/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/ + - type: namespace + value: http://ariadne-registry.dcu.gr/schema-definition + - type: homepage + value: http://ariadne-registry.dcu.gr/ + subject_areas: + - Archaeology + title: ARIADNE Dataset Catalogue Model (ACDM) +http://bluenet3.antcrc.utas.edu.au/mcp: + acronym: ISO19115 + field_of_science: + - earth and related environmental sciences + - cartography + - oceanography + - glaciology + - meteorology + - climatology + - geology + - hydrology + - physical geography + - hydrogeology + - natural sciences + id: iso-19115 + identifier: + - type: local + value: msc:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.t7mby9 + - type: homepage + value: http://www.iso.org/iso/catalogue_detail.htm?csnumber=53798 + - type: namespace + value: http://www.isotc211.org/2005/gmd/gmd.xsd + - type: namespace + value: http://www.isotc211.org/2005/gmd + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mds/2.0 + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mds/1.0 + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mdb/2.0 + - type: namespace + value: http://bluenet3.antcrc.utas.edu.au/mcp + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Geology + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Topography + title: ISO 19115 +http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd: + acronym: CMDI + field_of_science: + - languages and literature + - humanities + - linguistics + id: cmd-component-metadata + identifier: + - type: local + value: fuji:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2e0599 + - type: namespace + value: http://www.clarin.eu/cmd/ + - type: namespace + value: https://www.clarin.eu/cmd/1 + - type: homepage + value: https://www.clarin.eu/content/component-metadata + - type: namespace + value: http://www.clarin.eu/cmd/1 + - type: schema + value: http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - type: schema + value: https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - type: schema + value: https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd + subject_areas: + - Linguistics + - Languages + title: Component MetaData Specification (CMDI) +http://cds.u-strasbg.fr/doc/catstd.htx: + acronym: + field_of_science: + - astrophysics + - astronomy + - natural sciences + id: sdac + identifier: + - type: local + value: msc:m37 + - type: local + value: https://doi.org/10.25504/FAIRsharing.zcjkc7 + - type: homepage + value: http://cds.u-strasbg.fr/doc/catstd.htx + subject_areas: + - Astronomy + - Astrophysics + title: SDAC (Standard for Documentation of Astronomical Catalogues) +http://cds.u-strasbg.fr/doc/catstd.pdf: + acronym: + field_of_science: + - astrophysics + - astronomy + - natural sciences + id: sdac + identifier: + - type: local + value: msc:m37 + - type: local + value: https://doi.org/10.25504/FAIRsharing.zcjkc7 + - type: homepage + value: http://cds.u-strasbg.fr/doc/catstd.htx + subject_areas: + - Astronomy + - Astrophysics + title: SDAC (Standard for Documentation of Astronomical Catalogues) +http://cfconventions.org/: + acronym: CF + field_of_science: + - oceanography + - meteorology + - climatology + - natural sciences + id: cf-climate-and-forecast-metadata-conventions + identifier: + - type: local + value: msc:m5 + - type: local + value: https://doi.org/10.25504/FAIRsharing.f8cd83 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/cf-climate-and-forecast-metadata-conventions + - type: homepage + value: http://cfconventions.org/ + subject_areas: + - Climatology + - Meteorology + - Oceanography + title: CF (Climate and Forecast) Metadata Conventions +http://cfconventions.org/documents.html: + acronym: CF + field_of_science: + - oceanography + - meteorology + - climatology + - natural sciences + id: cf-climate-and-forecast-metadata-conventions + identifier: + - type: local + value: msc:m5 + - type: local + value: https://doi.org/10.25504/FAIRsharing.f8cd83 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/cf-climate-and-forecast-metadata-conventions + - type: homepage + value: http://cfconventions.org/ + subject_areas: + - Climatology + - Meteorology + - Oceanography + title: CF (Climate and Forecast) Metadata Conventions +http://clarin-pl.eu/ns/experimental/bibtex: + acronym: BibTeX + field_of_science: [] + id: bibtex-format + identifier: + - type: local + value: fuji:m34 + - type: local + value: https://doi.org/10.25504/FAIRsharing.bdf2fe + - type: homepage + value: http://www.bibtex.org/ + - type: namespace + value: http://clarin-pl.eu/ns/experimental/bibtex + - type: namespace + value: http://lindat.mff.cuni.cz/ns/experimental/bibtex + - type: namespace + value: http://repository.clarin.dk/ns/experimental/bibtex + subject_areas: + title: BibTeX +http://clinicaltrials.gov/ct2/manage-recs/resources: + acronym: + field_of_science: + - medical and health sciences + - clinical medicine + id: protocol-data-element-definitions + identifier: + - type: local + value: msc:m32 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/protocol-data-element-definitions + - type: local + value: https://doi.org/10.25504/FAIRsharing.7e962d + - type: homepage + value: http://clinicaltrials.gov/ct2/manage-recs/resources + - type: schema + value: https://prsinfo.clinicaltrials.gov/ProtocolRecordSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/prs + - type: schema + value: https://prsinfo.clinicaltrials.gov/RRSUploadSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/rrs + subject_areas: + - Clinical medicine + title: Protocol Data Element Definitions +http://clinicaltrials.gov/prs: + acronym: + field_of_science: + - medical and health sciences + - clinical medicine + id: protocol-data-element-definitions + identifier: + - type: local + value: msc:m32 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/protocol-data-element-definitions + - type: local + value: https://doi.org/10.25504/FAIRsharing.7e962d + - type: homepage + value: http://clinicaltrials.gov/ct2/manage-recs/resources + - type: schema + value: https://prsinfo.clinicaltrials.gov/ProtocolRecordSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/prs + - type: schema + value: https://prsinfo.clinicaltrials.gov/RRSUploadSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/rrs + subject_areas: + - Clinical medicine + title: Protocol Data Element Definitions +http://clinicaltrials.gov/rrs: + acronym: + field_of_science: + - medical and health sciences + - clinical medicine + id: protocol-data-element-definitions + identifier: + - type: local + value: msc:m32 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/protocol-data-element-definitions + - type: local + value: https://doi.org/10.25504/FAIRsharing.7e962d + - type: homepage + value: http://clinicaltrials.gov/ct2/manage-recs/resources + - type: schema + value: https://prsinfo.clinicaltrials.gov/ProtocolRecordSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/prs + - type: schema + value: https://prsinfo.clinicaltrials.gov/RRSUploadSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/rrs + subject_areas: + - Clinical medicine + title: Protocol Data Element Definitions +http://code.google.com/p/applecore/wiki/Introduction: + acronym: aDwC + field_of_science: + - botany + - natural sciences + id: apple-core + identifier: + - type: local + value: msc:m47 + - type: local + value: https://fairsharing.org/726 + - type: homepage + value: http://code.google.com/p/applecore/wiki/Introduction + subject_areas: + - Botany + title: Apple Core +http://code.google.com/p/darwincore-germplasm/: + acronym: + field_of_science: + - botany + - natural sciences + id: dwc-germplasm + identifier: + - type: local + value: msc:m56 + - type: local + value: https://doi.org/10.25504/FAIRsharing.hgsFLe + - type: homepage + value: http://code.google.com/p/darwincore-germplasm/ + - type: namespace + value: http://purl.org/germplasm# + - type: namespace + value: http://purl.org/germplasm/germplasmTerm# + subject_areas: + - Botany + title: DwC Germplasm +http://crdo.risc.cnrs.fr/schemas/dcq/: + acronym: QDC + field_of_science: + - sciences + id: dublin-core-qualified + identifier: + - type: local + value: fuji:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3nx7t + - type: homepage + value: https://www.dublincore.org/specifications/dublin-core/dcmes-qualifiers/ + - type: namespace + value: urn:dc:qdc:container + - type: namespace + value: figshare:oai:qdc + - type: namespace + value: http://naca.central.cranfield.ac.uk/ethos-oai/2.0/ + - type: namespace + value: http://ora.ox.ac.uk/oai-pmh/metadata-formats/solo_dc + - type: schema + value: https://cocoon.huma-num.fr/schemas/dcq.xsd + - type: namespace + value: http://crdo.risc.cnrs.fr/schemas/dcq/ + - type: namespace + value: http://oai.base-search.net/base_dc/ + - type: namespace + value: http://oai.base-search.net/base_dc + - type: schema + value: http://oai.base-search.net/base_dc/base_dc.xsd + subject_areas: + - Multidisciplinary + title: Qualified Dublin Core +http://da-ra.de/dara/schemadefinitions/dara.xsd: + acronym: da|ra + field_of_science: + - political sciences + - social sciences + - sociology + id: dara-metadata-schema + identifier: + - type: local + value: fuji:m10 + - type: local + value: https://fairsharing.org/4651 + - type: namespace + value: http://da-ra.de/schema/kernel-4 + - type: schema + value: http://da-ra.de/dara/schemadefinitions/dara.xsd + - type: schema + value: dara_v2.2.1_de_en_19112012.xsd + - type: schema + value: http://www.da-ra.de/fileadmin/media/da-ra.de/Technik/dara_v3.1_de_en_18112014.xsd + - type: homepage + value: https://www.da-ra.de/downloads#metadata + subject_areas: + - Social policy + - Sociology + title: da|ra Metadata Schema +http://da-ra.de/schema/kernel-4: + acronym: da|ra + field_of_science: + - political sciences + - social sciences + - sociology + id: dara-metadata-schema + identifier: + - type: local + value: fuji:m10 + - type: local + value: https://fairsharing.org/4651 + - type: namespace + value: http://da-ra.de/schema/kernel-4 + - type: schema + value: http://da-ra.de/dara/schemadefinitions/dara.xsd + - type: schema + value: dara_v2.2.1_de_en_19112012.xsd + - type: schema + value: http://www.da-ra.de/fileadmin/media/da-ra.de/Technik/dara_v3.1_de_en_18112014.xsd + - type: homepage + value: https://www.da-ra.de/downloads#metadata + subject_areas: + - Social policy + - Sociology + title: da|ra Metadata Schema +http://data-archive.ac.uk/create-manage/projects/qudex?index=1: + acronym: + field_of_science: + - sciences + id: qudex-qualitative-data-exchange-format + identifier: + - type: local + value: msc:m34 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/qudex-qualitative-data-exchange-format + - type: local + value: https://doi.org/10.25504/FAIRsharing.d42cb9 + - type: homepage + value: http://www.data-archive.ac.uk/create-manage/projects/qudex?index=1 + - type: schema + value: https://dam.data-archive.ac.uk/standards/qudex_v03_01.xsd + - type: namespace + value: http://www.data-archive.ac.uk/dext/schema/draft + subject_areas: + - Multidisciplinary + title: QuDEx (Qualitative Data Exchange Format) +http://datacite.org/schema/kernel: + acronym: datacite + field_of_science: + - sciences + id: datacite-metadata-schema + identifier: + - type: local + value: msc:m11 + - type: local + value: https://doi.org/10.25504/FAIRsharing.me4qwe + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/datacite-metadata-schema + - type: homepage + value: http://schema.datacite.org + - type: namespace + value: http://datacite.org/schema/kernel + subject_areas: + - Multidisciplinary + title: DataCite Metadata Schema +http://datacite.org/schema/kernel-2.1: + acronym: datacite + field_of_science: + - sciences + id: datacite-metadata-schema + identifier: + - type: local + value: msc:m11 + - type: local + value: https://doi.org/10.25504/FAIRsharing.me4qwe + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/datacite-metadata-schema + - type: homepage + value: http://schema.datacite.org + - type: namespace + value: http://datacite.org/schema/kernel + subject_areas: + - Multidisciplinary + title: DataCite Metadata Schema +http://datacite.org/schema/kernel-2.2: + acronym: datacite + field_of_science: + - sciences + id: datacite-metadata-schema + identifier: + - type: local + value: msc:m11 + - type: local + value: https://doi.org/10.25504/FAIRsharing.me4qwe + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/datacite-metadata-schema + - type: homepage + value: http://schema.datacite.org + - type: namespace + value: http://datacite.org/schema/kernel + subject_areas: + - Multidisciplinary + title: DataCite Metadata Schema +http://datacite.org/schema/kernel-3: + acronym: datacite + field_of_science: + - sciences + id: datacite-metadata-schema + identifier: + - type: local + value: msc:m11 + - type: local + value: https://doi.org/10.25504/FAIRsharing.me4qwe + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/datacite-metadata-schema + - type: homepage + value: http://schema.datacite.org + - type: namespace + value: http://datacite.org/schema/kernel + subject_areas: + - Multidisciplinary + title: DataCite Metadata Schema +http://datacite.org/schema/kernel-3.1: + acronym: datacite + field_of_science: + - sciences + id: datacite-metadata-schema + identifier: + - type: local + value: msc:m11 + - type: local + value: https://doi.org/10.25504/FAIRsharing.me4qwe + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/datacite-metadata-schema + - type: homepage + value: http://schema.datacite.org + - type: namespace + value: http://datacite.org/schema/kernel + subject_areas: + - Multidisciplinary + title: DataCite Metadata Schema +http://datacite.org/schema/kernel-4: + acronym: datacite + field_of_science: + - sciences + id: datacite-metadata-schema + identifier: + - type: local + value: msc:m11 + - type: local + value: https://doi.org/10.25504/FAIRsharing.me4qwe + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/datacite-metadata-schema + - type: homepage + value: http://schema.datacite.org + - type: namespace + value: http://datacite.org/schema/kernel + subject_areas: + - Multidisciplinary + title: DataCite Metadata Schema +http://datadryad.org/metadata/: + acronym: + field_of_science: + - sciences + id: dryad-metadata-application-profile + identifier: + - type: local + value: msc:m55 + - type: homepage + value: http://wiki.datadryad.org/Metadata_Profile + - type: namespace + value: http://datadryad.org/metadata/ + - type: schema + value: http://datadryad.org/profile/v3.1/dryad.xsd + - type: schema + value: http://datadryad.org/profile/v3/dryad.xsd + - type: schema + value: http://ils.unc.edu/mrc/dryad/version1_0/dryad_1_0.xsd + subject_areas: + - Multidisciplinary + title: Dryad Metadata Application Profile +http://datadryad.org/profile/v3.1/dryad.xsd: + acronym: + field_of_science: + - sciences + id: dryad-metadata-application-profile + identifier: + - type: local + value: msc:m55 + - type: homepage + value: http://wiki.datadryad.org/Metadata_Profile + - type: namespace + value: http://datadryad.org/metadata/ + - type: schema + value: http://datadryad.org/profile/v3.1/dryad.xsd + - type: schema + value: http://datadryad.org/profile/v3/dryad.xsd + - type: schema + value: http://ils.unc.edu/mrc/dryad/version1_0/dryad_1_0.xsd + subject_areas: + - Multidisciplinary + title: Dryad Metadata Application Profile +http://datadryad.org/profile/v3/dryad.xsd: + acronym: + field_of_science: + - sciences + id: dryad-metadata-application-profile + identifier: + - type: local + value: msc:m55 + - type: homepage + value: http://wiki.datadryad.org/Metadata_Profile + - type: namespace + value: http://datadryad.org/metadata/ + - type: schema + value: http://datadryad.org/profile/v3.1/dryad.xsd + - type: schema + value: http://datadryad.org/profile/v3/dryad.xsd + - type: schema + value: http://ils.unc.edu/mrc/dryad/version1_0/dryad_1_0.xsd + subject_areas: + - Multidisciplinary + title: Dryad Metadata Application Profile +http://diglib.hab.de/rules/schema/emblem: + acronym: Emblem + field_of_science: + - humanities + id: emblem-metadata-schema + identifier: + - type: local + value: fuji:m16 + - type: local + value: https://fairsharing.org/4654 + - type: homepage + value: http://diglib.hab.de/rules/schema/emblem/ + - type: namespace + value: http://diglib.hab.de/rules/schema/emblem + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-3.xsd + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-2.xsd + subject_areas: + - Humanities + title: Emblem XML-Schema +http://diglib.hab.de/rules/schema/emblem/: + acronym: Emblem + field_of_science: + - humanities + id: emblem-metadata-schema + identifier: + - type: local + value: fuji:m16 + - type: local + value: https://fairsharing.org/4654 + - type: homepage + value: http://diglib.hab.de/rules/schema/emblem/ + - type: namespace + value: http://diglib.hab.de/rules/schema/emblem + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-3.xsd + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-2.xsd + subject_areas: + - Humanities + title: Emblem XML-Schema +http://diglib.hab.de/rules/schema/emblem/emblem-1-2.xsd: + acronym: Emblem + field_of_science: + - humanities + id: emblem-metadata-schema + identifier: + - type: local + value: fuji:m16 + - type: local + value: https://fairsharing.org/4654 + - type: homepage + value: http://diglib.hab.de/rules/schema/emblem/ + - type: namespace + value: http://diglib.hab.de/rules/schema/emblem + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-3.xsd + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-2.xsd + subject_areas: + - Humanities + title: Emblem XML-Schema +http://diglib.hab.de/rules/schema/emblem/emblem-1-3.xsd: + acronym: Emblem + field_of_science: + - humanities + id: emblem-metadata-schema + identifier: + - type: local + value: fuji:m16 + - type: local + value: https://fairsharing.org/4654 + - type: homepage + value: http://diglib.hab.de/rules/schema/emblem/ + - type: namespace + value: http://diglib.hab.de/rules/schema/emblem + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-3.xsd + - type: schema + value: http://diglib.hab.de/rules/schema/emblem/emblem-1-2.xsd + subject_areas: + - Humanities + title: Emblem XML-Schema +http://docs.fdsn.org/projects/stationxml/en/latest/: + acronym: + field_of_science: + - geophysics + - earth and related environmental sciences + - natural sciences + id: fdsn-seismograph + identifier: + - type: local + value: fuji:m8 + - type: local + value: https://fairsharing.org/1434 + - type: namespace + value: http://www.fdsn.org/xml/station/1 + - type: homepage + value: http://www.fdsn.org/xml/station/ + subject_areas: + - Earth sciences + - Geophysics + title: International Federation of Digital Seismograph Networks StationXML (FDSN StationXML) +http://docs.rioxx.net/schema/v1.0/: + acronym: rioxx + field_of_science: + - sciences + id: rioxx-metadata-application-profile + identifier: + - type: local + value: fuji:m5 + - type: local + value: https://fairsharing.org/4690 + - type: namespace + value: http://www.rioxx.net/schema/v2.0/rioxx/ + - type: homepage + value: https://www.rioxx.net/ + - type: namespace + value: https://www.rioxx.net/schema/v2.0/rioxxterms/ + - type: namespace + value: http://docs.rioxx.net/schema/v1.0/ + subject_areas: + - Multidisciplinary + title: RIOXX Metadata Application Profile +http://download.nexusformat.org/doc/html/ref_doc.html: + acronym: + field_of_science: + - engineering and technology + - chemical sciences + - crystallography + - materials engineering + - natural sciences + id: nexus + identifier: + - type: local + value: msc:m25 + - type: local + value: https://doi.org/10.25504/FAIRsharing.eq2pdx + - type: homepage + value: http://www.nexusformat.org/ + subject_areas: + - Chemistry + - Crystallography + - Materials engineering + title: NeXus +http://dublincore.org: + acronym: DC + field_of_science: + - sciences + id: dublin-core + identifier: + - type: local + value: msc:m15 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3nx7t + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dublin-core + - type: homepage + value: http://dublincore.org + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/dcterms.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/simpledc20021212.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/dc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/dcmitype.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/simpledc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/2008/02/11/qualifieddc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/dc.xsd + - type: schema + value: http://dublincore.org/schemas/xmls/qdc/dcterms.xsd + - type: schema + value: 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local + value: msc:m101 + - type: namespace + value: https://schema.org + - type: namespace + value: http://schema.org + - type: homepage + value: https://schema.org/docs/schemas.html + subject_areas: + - Multidisciplinary + title: Schema.org +http://schema.ukeof.org.uk/: + acronym: + field_of_science: + - engineering and technology + - biological sciences + - meteorology + - climatology + - ecology + - geology + - hydrology + - remote sensing + - soil sciences + - natural sciences + id: ukeof + identifier: + - type: local + value: msc:m40 + - type: local + value: https://doi.org/10.25504/FAIRsharing.9xytp6 + - type: homepage + value: http://www.ukeof.org.uk/ + - type: schema + value: https://cataloguestaging.ukeof.org.uk/schema/ukeof.1.0.0.xsd + - type: schema + value: https://www.ukeof.org.uk/schema/1/UKEOF_v1.0.xsd + - type: namespace + value: http://www.ukeof.org.uk/schema/1 + subject_areas: + - Biogeography + - Biological diversity + - Climatology + - Ecology + - Geology + - 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title: ISO 19115 +http://standards.iso.org/iso/19115/-3/mds/2.0: + acronym: ISO19115 + field_of_science: + - earth and related environmental sciences + - cartography + - oceanography + - glaciology + - meteorology + - climatology + - geology + - hydrology + - physical geography + - hydrogeology + - natural sciences + id: iso-19115 + identifier: + - type: local + value: msc:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.t7mby9 + - type: homepage + value: http://www.iso.org/iso/catalogue_detail.htm?csnumber=53798 + - type: namespace + value: http://www.isotc211.org/2005/gmd/gmd.xsd + - type: namespace + value: http://www.isotc211.org/2005/gmd + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mds/2.0 + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mds/1.0 + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mdb/2.0 + - type: namespace + value: http://bluenet3.antcrc.utas.edu.au/mcp + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Geology + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Topography + title: ISO 19115 +http://usgin.github.io/usginspecs/USGIN_ISO_Metadata.htm: + acronym: + field_of_science: + - earth and related environmental sciences + - natural sciences + id: usgin-iso-profile + identifier: + - type: local + value: msc:m81 + - type: local + value: https://doi.org/10.25504/FAIRsharing.c82136 + - type: homepage + value: http://repository.stategeothermaldata.org/repository/resource/98ddf901b9782a25982e01af3b0bda50/ + subject_areas: + - Earth sciences + title: USGIN (US Geoscience Information Network) Metadata Profile +http://varioml.org/xml/1.0: + acronym: + field_of_science: + - genetics + - natural sciences + id: varioml + identifier: + - type: local + value: msc:m82 + - type: local + value: https://doi.org/10.25504/FAIRsharing.pxvkt0 + - type: homepage + value: http://www.ncbi.nlm.nih.gov/pubmed/23031277 + - type: namespace + value: http://varioml.org/xml/1.0 + subject_areas: + - Genetics + title: VarioML +http://w3id.org/meta-share/meta-share/: + acronym: META-SHARE + field_of_science: + - humanities + - linguistics + id: metashare-metadata + identifier: + - type: local + value: fuji:m12 + - type: local + value: https://fairsharing.org/4665 + - type: homepage + value: http://www.meta-share.org/p/93/Documentation#model + - type: namespace + value: http://www.ilsp.gr/META-XMLSchema + - type: namespace + value: http://w3id.org/meta-share/meta-share/ + subject_areas: + - Humanities + - Linguistics + title: Metadata Schema for the Description of Language Resources +http://wiki.datadryad.org/Metadata_Profile: + acronym: + field_of_science: + - sciences + id: dryad-metadata-application-profile + identifier: + - type: local + value: msc:m55 + - type: homepage + value: http://wiki.datadryad.org/Metadata_Profile + - type: namespace + value: http://datadryad.org/metadata/ + - type: schema + value: http://datadryad.org/profile/v3.1/dryad.xsd + - type: schema + value: http://datadryad.org/profile/v3/dryad.xsd + - type: schema + value: http://ils.unc.edu/mrc/dryad/version1_0/dryad_1_0.xsd + subject_areas: + - Multidisciplinary + title: Dryad Metadata Application Profile +http://wiki.ecrystals.chem.soton.ac.uk/images/9/9d/ECrystals-WP4-PM-Final.pdf: + acronym: + field_of_science: + - crystallography + - natural sciences + id: tidcc-towards-international-data-commons-crystallography + identifier: + - type: local + value: msc:m78 + - type: local + value: https://fairsharing.org/208 + - type: homepage + value: http://wiki.ecrystals.chem.soton.ac.uk/images/9/9d/ECrystals-WP4-PM-Final.pdf + subject_areas: + - Crystallography + title: TIDCC (Towards an International Data Commons for Crystallography) +http://wiki.tdwg.org/ABCD: + acronym: ABCD + field_of_science: + - biological sciences + - palaeontology + - genetics + - earth and related environmental sciences + - zoology + - geology + - botany + - natural sciences + id: abcd-access-biological-collection-data + identifier: + - type: local + value: msc:m1 + - type: local + value: https://doi.org/10.25504/FAIRsharing.kr3215 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/abcd-access-biological-collection-data + - type: homepage + value: http://wiki.tdwg.org/ABCD + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_3.0.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/3.0 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.1.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.1 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.06.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.06 + subject_areas: + - Biological diversity + - Botany + - Earth sciences + - Genetics + - Geology + - Palaeontology + - Zoology + title: ABCD (Access to Biological Collection Data) +http://wiki.tdwg.org/twiki/bin/view/DarwinCore/GeospatialExtension: + acronym: DwC-S + field_of_science: + - cartography + - biological sciences + - physical geography + - natural sciences + id: darwin-core-geospatial-extension + identifier: + - type: local + value: msc:m54 + - type: local + value: https://doi.org/10.25504/FAIRsharing.76c06d + - type: homepage + value: http://wiki.tdwg.org/twiki/bin/view/DarwinCore/GeospatialExtension + subject_areas: + - Biogeography + - Cartography + - Topography + title: Darwin Core Geospatial Extension +http://www.agi.org.uk/uk-gemini/: + acronym: + field_of_science: + - cartography + - physical geography + - natural sciences + id: uk-gemini + identifier: + - type: local + value: msc:m80 + - type: local + value: https://doi.org/10.25504/FAIRsharing.b49fab + - type: homepage + value: http://www.agi.org.uk/uk-gemini/ + subject_areas: + - Cartography + - Geography + - Topography + title: UK Gemini +http://www.agls.gov.au: + acronym: AGLS + field_of_science: + - sciences + id: agls-metadata-profile + identifier: + - type: local + value: msc:m44 + - type: local + value: https://fairsharing.org/751 + - type: homepage + value: http://www.agls.gov.au + - type: namespace + value: http://www.agls.gov.au/agls/terms/ + subject_areas: + - Multidisciplinary + title: AGLS Metadata Profile +http://www.agls.gov.au/agls/terms/: + acronym: AGLS + field_of_science: + - sciences + id: agls-metadata-profile + identifier: + - type: local + value: msc:m44 + - type: local + value: https://fairsharing.org/751 + - type: homepage + value: http://www.agls.gov.au + - type: namespace + value: http://www.agls.gov.au/agls/terms/ + subject_areas: + - Multidisciplinary + title: AGLS Metadata Profile +http://www.aodc.org.au/index.php?id=37: + acronym: AODN + field_of_science: + - earth and related environmental sciences + - oceanography + - glaciology + - meteorology + - climatology + - hydrology + - natural sciences + id: marine-community-profile + identifier: + - type: local + value: msc:m71 + - type: local + value: https://doi.org/10.25504/FAIRsharing.18b8b4 + - type: homepage + value: http://www.aodc.org.au/index.php?id=37 + - type: namespace + value: http://schemas.aodn.org.au/mcp-2.0 + - type: namespace + value: http://schemas.aodn.org.au + - type: schema + value: http://schemas.aodn.org.au/mcp-2.0/schema.xsd + subject_areas: + - Climatology + - Earth sciences + - Glaciology + - Hydrology + - Meteorology + - Oceanography + title: AODN Marine Community Profile +http://www.bibtex.org/: + acronym: BibTeX + field_of_science: [] + id: bibtex-format + identifier: + - type: local + value: fuji:m34 + - type: local + value: https://doi.org/10.25504/FAIRsharing.bdf2fe + - type: homepage + value: http://www.bibtex.org/ + - type: namespace + value: http://clarin-pl.eu/ns/experimental/bibtex + - type: namespace + value: http://lindat.mff.cuni.cz/ns/experimental/bibtex + - type: namespace + value: http://repository.clarin.dk/ns/experimental/bibtex + subject_areas: + title: BibTeX +http://www.carare.eu/carareSchema: + acronym: CARARE + field_of_science: + - architectural design + - humanities + - archaeology + - history + id: carare-metadata-schema + identifier: + - type: local + value: msc:m49 + - type: local + value: https://doi.org/10.25504/FAIRsharing.ba7c93 + - type: homepage + value: https://pro.carare.eu/doku.php?id=support:metadata-schema + - type: namespace + value: http://www.carare.eu/carareSchema + - type: schema + value: https://pro.carare.eu/lib/exe/fetch.php?media=support:carare-v1_0_6_1.xsd + subject_areas: + - Archaeology + - Architecture + - Cultural heritage + - Cultural property preservation + - History + title: CARARE metadata schema +http://www.cessda.org/sharing/managing/3/: + acronym: + field_of_science: + - demography + - economics + - social geography + - sociology + - social sciences + id: cessda-mli-council-european-social-science-data-archives-minimum-level-inf + identifier: + - type: local + value: msc:m50 + - type: local + value: https://fairsharing.org/4272 + - type: homepage + value: http://www.cessda.org/sharing/managing/3/ + subject_areas: + - Demography + - Economics + - Land use + - Sociology + title: CESSDA MLI - Council of European Social Science Data Archives Minimum Level of Information +http://www.clarin.eu/cmd/: + acronym: CMDI + field_of_science: + - languages and literature + - humanities + - linguistics + id: cmd-component-metadata + identifier: + - type: local + value: fuji:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2e0599 + - type: namespace + value: http://www.clarin.eu/cmd/ + - type: namespace + value: https://www.clarin.eu/cmd/1 + - type: homepage + value: https://www.clarin.eu/content/component-metadata + - type: namespace + value: http://www.clarin.eu/cmd/1 + - type: schema + value: http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - type: schema + value: https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - type: schema + value: https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd + subject_areas: + - Linguistics + - Languages + title: Component MetaData Specification (CMDI) +http://www.clarin.eu/cmd/1: + acronym: CMDI + field_of_science: + - languages and literature + - humanities + - linguistics + id: cmd-component-metadata + identifier: + - type: local + value: fuji:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2e0599 + - type: namespace + value: http://www.clarin.eu/cmd/ + - type: namespace + value: https://www.clarin.eu/cmd/1 + - type: homepage + value: https://www.clarin.eu/content/component-metadata + - type: namespace + value: http://www.clarin.eu/cmd/1 + - type: schema + value: http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - type: schema + value: https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - type: schema + value: https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd + subject_areas: + - Linguistics + - Languages + title: Component MetaData Specification (CMDI) +http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484: + acronym: CMDI + field_of_science: + - languages and literature + - humanities + - linguistics + id: cmd-component-metadata + identifier: + - type: local + value: fuji:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2e0599 + - type: namespace + value: http://www.clarin.eu/cmd/ + - type: namespace + value: https://www.clarin.eu/cmd/1 + - type: homepage + value: https://www.clarin.eu/content/component-metadata + - type: namespace + value: http://www.clarin.eu/cmd/1 + - type: schema + value: http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - type: schema + value: https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - type: schema + value: https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd + subject_areas: + - Linguistics + - Languages + title: Component MetaData Specification (CMDI) +http://www.communicatingastronomy.org/avm/1.0/: + acronym: AVM + field_of_science: + - astronomy + - natural sciences + id: avm-astronomy-visualization-metadata + identifier: + - type: local + value: msc:m3 + - type: local + value: https://doi.org/10.25504/FAIRsharing.338ze0 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/avm-astronomy-visualization-metadata + - type: homepage + value: http://www.virtualastronomy.org/avm_metadata.php + - type: namespace + value: http://www.communicatingastronomy.org/avm/1.0/ + subject_areas: + - Astronomy + title: AVM (Astronomy Visualization Metadata) +http://www.crossref.org/schema: + acronym: crossref + field_of_science: + - sciences + id: crossref-schema + identifier: + - type: local + value: fuji:m40 + - type: local + value: https://doi.org/10.25504/FAIRsharing.bbQbSW + - type: homepage + value: http://www.crossref.org/schema + - type: namespace + value: http://www.crossref.org/schema/4.4.0 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.0.xsd + - type: schema + value: https://data.crossref.org/schemas/crossref4.3.7.xsd + - type: namespace + value: http://www.crossref.org/schema/4.3.7 + - type: namespace + value: http://www.crossref.org/schema/4.4.1 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.1.xsd + - type: namespace + value: http://www.crossref.org/schema/4.4.2 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.2.xsd + - type: namespace + value: http://www.crossref.org/schema/4.8.1 + - type: schema + value: https://data.crossref.org/schemas/crossref4.8.1.xsd + - type: namespace + value: http://www.crossref.org/schema/5.3.1 + - type: schema + value: https://data.crossref.org/schemas/crossref5.3.1.xsd + subject_areas: + - Multidisciplinary + title: Crossref Schema +http://www.crossref.org/schema/4.3.7: + acronym: crossref + field_of_science: + - sciences + id: crossref-schema + identifier: + - type: local + value: fuji:m40 + - type: local + value: https://doi.org/10.25504/FAIRsharing.bbQbSW + - type: homepage + value: http://www.crossref.org/schema + - type: namespace + value: http://www.crossref.org/schema/4.4.0 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.0.xsd + - type: schema + 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type: homepage + value: http://www.crossref.org/schema + - type: namespace + value: http://www.crossref.org/schema/4.4.0 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.0.xsd + - type: schema + value: https://data.crossref.org/schemas/crossref4.3.7.xsd + - type: namespace + value: http://www.crossref.org/schema/4.3.7 + - type: namespace + value: http://www.crossref.org/schema/4.4.1 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.1.xsd + - type: namespace + value: http://www.crossref.org/schema/4.4.2 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.2.xsd + - type: namespace + value: http://www.crossref.org/schema/4.8.1 + - type: schema + value: https://data.crossref.org/schemas/crossref4.8.1.xsd + - type: namespace + value: http://www.crossref.org/schema/5.3.1 + - type: schema + value: https://data.crossref.org/schemas/crossref5.3.1.xsd + subject_areas: + - Multidisciplinary + title: Crossref Schema +http://www.crossref.org/schema/4.4.1: + acronym: crossref + field_of_science: + - sciences + id: crossref-schema + identifier: + - type: local + value: fuji:m40 + - type: local + value: https://doi.org/10.25504/FAIRsharing.bbQbSW + - type: homepage + value: http://www.crossref.org/schema + - type: namespace + value: http://www.crossref.org/schema/4.4.0 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.0.xsd + - type: schema + value: https://data.crossref.org/schemas/crossref4.3.7.xsd + - type: namespace + value: http://www.crossref.org/schema/4.3.7 + - type: namespace + value: http://www.crossref.org/schema/4.4.1 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.1.xsd + - type: namespace + value: http://www.crossref.org/schema/4.4.2 + - type: schema + value: https://data.crossref.org/schemas/crossref4.4.2.xsd + - type: namespace + value: http://www.crossref.org/schema/4.8.1 + - type: schema + value: 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Visualization Metadata) +http://www.dcc.ac.uk/resources/metadata-standards/cf-climate-and-forecast-metadata-conventions: + acronym: CF + field_of_science: + - oceanography + - meteorology + - climatology + - natural sciences + identifier: cf-climate-and-forecast-metadata-conventions + ids: + - type: local + value: msc:m5 + - type: local + value: https://doi.org/10.25504/FAIRsharing.f8cd83 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/cf-climate-and-forecast-metadata-conventions + - type: homepage + value: http://cfconventions.org/ + subject_areas: + - Climatology + - Meteorology + - Oceanography + title: CF (Climate and Forecast) Metadata Conventions +http://www.dcc.ac.uk/resources/metadata-standards/cif-crystallographic-information-framework: + acronym: CIF + field_of_science: + - engineering and technology + - chemical sciences + - crystallography + - materials engineering + - natural sciences + identifier: cif-crystallographic-information-framework + 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Zoology + title: Darwin Core +http://www.dcc.ac.uk/resources/metadata-standards/datacite-metadata-schema: + acronym: datacite + field_of_science: + - sciences + identifier: datacite-metadata-schema + ids: + - type: local + value: msc:m11 + - type: local + value: https://doi.org/10.25504/FAIRsharing.me4qwe + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/datacite-metadata-schema + - type: homepage + value: http://schema.datacite.org + - type: namespace + value: http://datacite.org/schema/kernel + subject_areas: + - Multidisciplinary + title: DataCite Metadata Schema +http://www.dcc.ac.uk/resources/metadata-standards/dcat-data-catalog-vocabulary: + acronym: DCAT + field_of_science: + - sciences + identifier: dcat-data-catalog-vocabulary + ids: + - type: local + value: msc:m12 + - type: local + value: https://doi.org/10.25504/FAIRsharing.h4j3qm + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dcat-data-catalog-vocabulary + - type: 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Biochemistry + - Biology + - Biotechnology + - Cell biology + - Computer applications + - Environmental sciences + - Genetics + - Metabolism + - Proteins + title: MIBBI (Minimum Information for Biological and Biomedical Investigations) +http://www.dcc.ac.uk/resources/metadata-standards/midas-heritage: + acronym: MIDAS + field_of_science: + - architectural design + - humanities + - archaeology + - history + identifier: midas-heritage + ids: + - type: local + value: msc:m24 + - type: local + value: https://doi.org/10.25504/FAIRsharing.q0hgq + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/midas-heritage + - type: homepage + value: http://www.english-heritage.org.uk/publications/midas-heritage/ + - type: namespace + value: http://www.heritage-standards.org/midas/schema/1.0 + subject_areas: + - Archaeology + - Architecture + - Cultural heritage + - Cultural property preservation + - History + title: MIDAS-Heritage +http://www.dcc.ac.uk/resources/metadata-standards/oai-ore-open-archives-initiative-object-reuse-and-exchange: + acronym: OAI-ORE + field_of_science: + - humanities + - social sciences + - history + - anthropology + - sciences + identifier: oai-ore-open-archives-initiative-object-reuse-and-exchange + ids: + - type: local + value: msc:m26 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3mtaee + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/oai-ore-open-archives-initiative-object-reuse-and-exchange + - type: homepage + value: http://www.openarchives.org/ore/toc + - type: namespace + value: http://www.openarchives.org/ore/terms/ + subject_areas: + - Anthropology + - History + - Multidisciplinary + title: OAI-ORE (Open Archives Initiative Object Reuse and Exchange) +http://www.dcc.ac.uk/resources/metadata-standards/observ-om: + acronym: + field_of_science: + - biological sciences + - natural sciences + identifier: observ-om + ids: + - type: local + value: msc:m27 + - type: local + value: https://fairsharing.org/4682 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/observ-om + - type: homepage + value: http://www.molgenis.org/wiki/ObservStart + subject_areas: + - Biology + title: Observ-OM +http://www.dcc.ac.uk/resources/metadata-standards/observations-and-measurements: + acronym: + field_of_science: + - engineering and technology + - chemical sciences + - meteorology + - geology + - remote sensing + - natural sciences + identifier: observations-and-measurements + ids: + - type: local + value: msc:m28 + - type: local + value: https://doi.org/10.25504/FAIRsharing.4ehmy9 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/observations-and-measurements + - type: homepage + value: http://www.opengeospatial.org/standards/om + - type: namespace + value: http://schemas.opengis.net/om/2.0/ + - type: schema + value: https://schemas.opengis.net/om/2.0/observation.xsd + - type: schema + value: https://schemas.opengis.net/om/1.0.0/observation.xsd + - type: namespace + value: http://www.opengis.net/om/1.0 + subject_areas: + - Chemistry + - Geology + - Meteorology + - Remote sensing + title: Observations and Measurements +http://www.dcc.ac.uk/resources/metadata-standards/ome-xml-open-microscopy-environment-xml: + acronym: + field_of_science: + - agricultural sciences + - zoology + - cell biology + - plant protection + - botany + - physiology + - medical and health sciences + - veterinary sciences + - natural sciences + identifier: ome-xml-open-microscopy-environment-xml + ids: + - type: local + value: msc:m29 + - type: local + value: https://doi.org/10.25504/FAIRsharing.zk8p4g + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ome-xml-open-microscopy-environment-xml + - type: homepage + value: http://www.openmicroscopy.org/site/support/file-formats + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2016-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2015-01 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2013-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2012-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2011-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2010-04 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2010-06 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2009-09 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2008-09 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2008-02 + - type: namespace + value: http://www.openmicroscopy.org/Schemas/OME/2007-06 + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd + - type: schema + value: http://www.openmicroscopy.org/Schemas/OME/2015-01/ome.xsd + - type: schema + value: 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+http://www.dcc.ac.uk/resources/metadata-standards/protocol-data-element-definitions: + acronym: + field_of_science: + - medical and health sciences + - clinical medicine + identifier: protocol-data-element-definitions + ids: + - type: local + value: msc:m32 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/protocol-data-element-definitions + - type: local + value: https://doi.org/10.25504/FAIRsharing.7e962d + - type: homepage + value: http://clinicaltrials.gov/ct2/manage-recs/resources + - type: schema + value: https://prsinfo.clinicaltrials.gov/ProtocolRecordSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/prs + - type: schema + value: https://prsinfo.clinicaltrials.gov/RRSUploadSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/rrs + subject_areas: + - Clinical medicine + title: Protocol Data Element Definitions +http://www.dcc.ac.uk/resources/metadata-standards/prov: + acronym: + field_of_science: + - sciences + identifier: 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and probability + - social geography + - social sciences + - political sciences + - natural sciences + identifier: sdmx-statistical-data-and-metadata-exchange + ids: + - type: local + value: msc:m38 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/sdmx-statistical-data-and-metadata-exchange + - type: local + value: https://doi.org/10.25504/FAIRsharing.cea9zc + - type: homepage + value: http://sdmx.org + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/common + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/registry + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/structure + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/message + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/schemas/v3_0/data + - type: namespace + value: http://www.sdmx.org/resources/sdmxml/ + subject_areas: + - Demography + - Economics + - Human geography + 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MIDAS-Heritage +http://www.icpsr.umich.edu/DDI: + acronym: DDI + field_of_science: + - public health + - demography + - law + - economics + - statistics and probability + - social geography + - sociology + - social sciences + - history + - medical and health sciences + - political sciences + - humanities + - natural sciences + id: ddi-data-documentation-initiative + identifier: + - type: local + value: msc:m13 + - type: local + value: https://doi.org/10.25504/FAIRsharing.1t5ws6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.EZCpPd + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative + - type: homepage + value: http://www.ddialliance.org/ + - type: namespace + value: http://www.icpsr.umich.edu/DDI + - type: schema + value: http://www.ddialliance.org/DDI/schema/ddi3.1/dataset.xsd + - type: namespace + value: ddi:codebook:2_5 + - type: namespace + value: ddi:dataset:3_3 + - type: namespace + value: ddi:dataset:3_2 + - 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+ - Sociology + - Statistics + title: DDI (Data Documentation Initiative) +http://www.ilsp.gr/META-XMLSchema: + acronym: META-SHARE + field_of_science: + - humanities + - linguistics + id: metashare-metadata + identifier: + - type: local + value: fuji:m12 + - type: local + value: https://fairsharing.org/4665 + - type: homepage + value: http://www.meta-share.org/p/93/Documentation#model + - type: namespace + value: http://www.ilsp.gr/META-XMLSchema + - type: namespace + value: http://w3id.org/meta-share/meta-share/ + subject_areas: + - Humanities + - Linguistics + title: Metadata Schema for the Description of Language Resources +http://www.imsglobal.org/metadata/index.html: + acronym: LOM + field_of_science: [] + id: lom-higher-education-schema + identifier: + - type: local + value: fuji:m24 + - type: local + value: https://fairsharing.org/4664 + - type: homepage + value: http://www.imsglobal.org/metadata/index.html + - type: namespace + value: http://ltsc.ieee.org/xsd/LOMv1p0 + - type: namespace + value: http://ltsc.ieee.org/2002/09/lom-base# + - type: namespace + value: https://www.oerbw.de/hsoerlom + - type: schema + value: http://www.rdn.ac.uk/oai/lom/lom.xsd + - type: schema + value: https://w3id.org/kim/hs-oer-lom-profil/latest/schemas/hs-oer-lom.xsd + subject_areas: + title: Learning Object Metadata (LOM) +http://www.iso.org/iso/catalogue_detail.htm?csnumber=39229: + acronym: + field_of_science: + - earth and related environmental sciences + - cartography + - oceanography + - glaciology + - social geography + - climatology + - meteorology + - hydrology + - social sciences + - physical geography + - natural sciences + id: iso-19115-2-imagery-and-gridded-data + identifier: + - type: local + value: msc:m69 + - type: local + value: https://doi.org/10.25504/FAIRsharing.a6b18c + - type: homepage + value: http://www.iso.org/iso/catalogue_detail.htm?csnumber=39229 + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Glaciology + - Hydrology + - Land use + - Meteorology + - Oceanography + - Topography + title: ISO 19115-2 - Imagery and gridded data +http://www.iso.org/iso/catalogue_detail.htm?csnumber=53798: + acronym: ISO19115 + field_of_science: + - earth and related environmental sciences + - cartography + - oceanography + - glaciology + - meteorology + - climatology + - geology + - hydrology + - physical geography + - hydrogeology + - natural sciences + id: iso-19115 + identifier: + - type: local + value: msc:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.t7mby9 + - type: homepage + value: http://www.iso.org/iso/catalogue_detail.htm?csnumber=53798 + - type: namespace + value: http://www.isotc211.org/2005/gmd/gmd.xsd + - type: namespace + value: http://www.isotc211.org/2005/gmd + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mds/2.0 + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mds/1.0 + - type: namespace + value: http://standards.iso.org/iso/19115/-3/mdb/2.0 + - type: namespace + value: http://bluenet3.antcrc.utas.edu.au/mcp + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Geology + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Topography + title: ISO 19115 +http://www.isotc211.org/2005/gmd: + acronym: ISO19115 + field_of_science: + - earth and related environmental sciences + - cartography + - oceanography + - glaciology + - meteorology + - climatology + - geology + - hydrology + - physical geography + - hydrogeology + - natural sciences + id: iso-19115 + identifier: + - type: local + value: msc:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.t7mby9 + - type: homepage + value: http://www.iso.org/iso/catalogue_detail.htm?csnumber=53798 + - type: namespace + value: http://www.isotc211.org/2005/gmd/gmd.xsd + - type: namespace + value: http://www.isotc211.org/2005/gmd + - type: namespace + value: 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value: http://www.dcc.ac.uk/resources/metadata-standards/cif-crystallographic-information-framework + - type: homepage + value: http://www.iucr.org/resources/cif + subject_areas: + - Chemistry + - Crystallography + - Materials engineering + title: CIF (Crystallographic Information Framework) +http://www.iucr.org/resources/cif/spec: + acronym: CIF + field_of_science: + - engineering and technology + - chemical sciences + - crystallography + - materials engineering + - natural sciences + id: cif-crystallographic-information-framework + identifier: + - type: local + value: msc:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.zr52g5 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/cif-crystallographic-information-framework + - type: homepage + value: http://www.iucr.org/resources/cif + subject_areas: + - Chemistry + - Crystallography + - Materials engineering + title: CIF (Crystallographic Information Framework) 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identifier: + - type: local + value: fuji:m29 + - type: local + value: https://doi.org/10.25504/FAIRsharing.yYjZWb + - type: homepage + value: https://www.ivoa.net/documents/cover/CharacterisationDM-20070530.html + - type: schema + value: http://www.ivoa.net/xml/Characterisation/Characterisation-v1.11.xsd + subject_areas: + title: CharDM, Data Model for Astronomical DataSet Characterisation +http://www.ivoa.net/xml/RegistryInterface/v1.0: + acronym: ivoa-reg + field_of_science: + - astronomy + - natural sciences + id: ivoa-registry-metdata + identifier: + - type: local + value: fuji:m35 + - type: local + value: https://doi.org/10.25504/FAIRsharing.RycpEU + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/international-virtual-observatory-alliance-technical-specifications + - type: namespace + value: http://www.ivoa.net/xml/VORegistry/v1.0 + - type: namespace + value: http://www.ivoa.net/xml/RegistryInterface/v1.0 + - type: homepage + value: https://www.ivoa.net/Documents/cover/RDFVORegistry-20070920.html + subject_areas: + - Astronomy + title: IVOA Registry Interfaces +http://www.ivoa.net/xml/VORegistry/v1.0: + acronym: ivoa-reg + field_of_science: + - astronomy + - natural sciences + id: ivoa-registry-metdata + identifier: + - type: local + value: fuji:m35 + - type: local + value: https://doi.org/10.25504/FAIRsharing.RycpEU + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/international-virtual-observatory-alliance-technical-specifications + - type: namespace + value: http://www.ivoa.net/xml/VORegistry/v1.0 + - type: namespace + value: http://www.ivoa.net/xml/RegistryInterface/v1.0 + - type: homepage + value: https://www.ivoa.net/Documents/cover/RDFVORegistry-20070920.html + subject_areas: + - Astronomy + title: IVOA Registry Interfaces +http://www.language-archives.org/OLAC: + acronym: OLAC + field_of_science: + - humanities + - linguistics + id: olac-metadata + identifier: + - type: local + value: fuji:m14 + - type: local + value: https://doi.org/10.25504/FAIRsharing.17fbae + - type: namespace + value: http://www.language-archives.org/OLAC/1.1/ + - type: schema + value: http://www.language-archives.org/OLAC/1.1/olac.xsd + - type: homepage + value: http://www.language-archives.org/OLAC + subject_areas: + - Humanities + - Linguistics + title: OLAC metadata +http://www.language-archives.org/OLAC/1.1/: + acronym: OLAC + field_of_science: + - humanities + - linguistics + id: olac-metadata + identifier: + - type: local + value: fuji:m14 + - type: local + value: https://doi.org/10.25504/FAIRsharing.17fbae + - type: namespace + value: http://www.language-archives.org/OLAC/1.1/ + - type: schema + value: http://www.language-archives.org/OLAC/1.1/olac.xsd + - type: homepage + value: http://www.language-archives.org/OLAC + subject_areas: + - Humanities + - Linguistics + title: OLAC metadata +http://www.language-archives.org/OLAC/1.1/olac.xsd: + acronym: OLAC + field_of_science: + - humanities + - linguistics + id: olac-metadata + identifier: + - type: local + value: fuji:m14 + - type: local + value: https://doi.org/10.25504/FAIRsharing.17fbae + - type: namespace + value: http://www.language-archives.org/OLAC/1.1/ + - type: schema + value: http://www.language-archives.org/OLAC/1.1/olac.xsd + - type: homepage + value: http://www.language-archives.org/OLAC + subject_areas: + - Humanities + - Linguistics + title: OLAC metadata +http://www.lido-schema.org: + acronym: LIDO + field_of_science: + - humanities + id: lido-lightweight-information-describing-objects + identifier: + - type: local + value: fuji:m18 + - type: local + value: https://doi.org/10.25504/FAIRsharing.73558b + - type: schema + value: www.lido-schema.org/schema/latest/lido.xsd + - type: schema + value: www.lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: schema + value: http://www.lido-schema.org/schema/v1.0/lido-v1.0.xsd + - type: schema + value: http://lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: namespace + value: http://www.lido-schema.org + - type: homepage + value: http://www.lido-schema.org + subject_areas: + - Humanities + - Cultural heritage + title: LIDO, Lightweight Information Describing Objects +http://www.lido-schema.org/schema/v1.0/lido-v1.0.xsd: + acronym: LIDO + field_of_science: + - humanities + id: lido-lightweight-information-describing-objects + identifier: + - type: local + value: fuji:m18 + - type: local + value: https://doi.org/10.25504/FAIRsharing.73558b + - type: schema + value: www.lido-schema.org/schema/latest/lido.xsd + - type: schema + value: www.lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: schema + value: http://www.lido-schema.org/schema/v1.0/lido-v1.0.xsd + - type: schema + value: http://lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: namespace + value: http://www.lido-schema.org + - type: homepage + value: http://www.lido-schema.org + subject_areas: + - Humanities + - Cultural heritage + title: LIDO, Lightweight Information Describing Objects +http://www.loc.gov/MARC21/slim: + acronym: MARC + field_of_science: + - humanities + - sciences + - library sciences + id: marc-machine-readable-cataloging + identifier: + - type: local + value: msc:m88 + - type: local + value: https://doi.org/10.25504/FAIRsharing.217b1b + - type: homepage + value: http://www.loc.gov/marc/ + - type: schema + value: http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - type: schema + value: https://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - type: namespace + value: http://www.loc.gov/MARC21/slim + - type: namespace + value: http://www.ddb.de/professionell/MARC21/plus + subject_areas: + - Multidisciplinary + - Bibliographic standards + - Information/library standards + title: MARC (Machine-Readable Cataloging) +http://www.loc.gov/METS/: + acronym: METS + field_of_science: + - sciences + id: mets-metadata-encoding-and-transmission-standard + identifier: + - type: local + value: fuji:m11 + - type: local + value: 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Multidisciplinary + - Bibliographic standards + - Information/library standards + title: MARC (Machine-Readable Cataloging) +http://www.loc.gov/mods/: + acronym: MODS + field_of_science: + - library sciences + - humanities + id: mods-metadata-object-description-schema + identifier: + - type: local + value: msc:m97 + - type: local + value: https://doi.org/10.25504/FAIRsharing.o67X7e + - type: homepage + value: http://www.loc.gov/standards/mods/ + - type: namespace + value: http://www.loc.gov/mods/v3 + - type: namespace + value: http://www.loc.gov/mods/ + subject_areas: + - Bibliographic standards + - Information/library standards + title: MODS (Metadata Object Description Schema) +http://www.loc.gov/mods/v3: + acronym: MODS + field_of_science: + - library sciences + - humanities + id: mods-metadata-object-description-schema + identifier: + - type: local + value: msc:m97 + - type: local + value: https://doi.org/10.25504/FAIRsharing.o67X7e + - type: homepage + value: 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https://www.loc.gov/standards/premis/v1/PREMIS-v1-1.xsd + - type: namespace + value: http://www.loc.gov/standards/premis/v1 + subject_areas: + - Multidisciplinary + title: PREMIS +http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd: + acronym: MARC + field_of_science: + - humanities + - sciences + - library sciences + id: marc-machine-readable-cataloging + identifier: + - type: local + value: msc:m88 + - type: local + value: https://doi.org/10.25504/FAIRsharing.217b1b + - type: homepage + value: http://www.loc.gov/marc/ + - type: schema + value: http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - type: schema + value: https://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd + - type: namespace + value: http://www.loc.gov/MARC21/slim + - type: namespace + value: http://www.ddb.de/professionell/MARC21/plus + subject_areas: + - Multidisciplinary + - Bibliographic standards + - Information/library standards + title: MARC (Machine-Readable Cataloging) 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namespace + value: http://www.loc.gov/mods/ + subject_areas: + - Bibliographic standards + - Information/library standards + title: MODS (Metadata Object Description Schema) +http://www.loc.gov/standards/mods/mods-outline-3-5.html: + acronym: MODS + field_of_science: + - library sciences + - humanities + id: mods-metadata-object-description-schema + identifier: + - type: local + value: msc:m97 + - type: local + value: https://doi.org/10.25504/FAIRsharing.o67X7e + - type: homepage + value: http://www.loc.gov/standards/mods/ + - type: namespace + value: http://www.loc.gov/mods/v3 + - type: namespace + value: http://www.loc.gov/mods/ + subject_areas: + - Bibliographic standards + - Information/library standards + title: MODS (Metadata Object Description Schema) +http://www.loc.gov/standards/mods/mods-outline-3-6.html: + acronym: MODS + field_of_science: + - library sciences + - humanities + id: mods-metadata-object-description-schema + identifier: + - type: local + value: msc:m97 + - type: local + value: https://doi.org/10.25504/FAIRsharing.o67X7e + - type: homepage + value: http://www.loc.gov/standards/mods/ + - type: namespace + value: http://www.loc.gov/mods/v3 + - type: namespace + value: http://www.loc.gov/mods/ + subject_areas: + - Bibliographic standards + - Information/library standards + title: MODS (Metadata Object Description Schema) +http://www.loc.gov/standards/mods/mods-outline-3-7.html: + acronym: MODS + field_of_science: + - library sciences + - humanities + id: mods-metadata-object-description-schema + identifier: + - type: local + value: msc:m97 + - type: local + value: https://doi.org/10.25504/FAIRsharing.o67X7e + - type: homepage + value: http://www.loc.gov/standards/mods/ + - type: namespace + value: http://www.loc.gov/mods/v3 + - type: namespace + value: http://www.loc.gov/mods/ + subject_areas: + - Bibliographic standards + - Information/library standards + title: MODS (Metadata Object Description Schema) +http://www.loc.gov/standards/mods/v3/mods-3-3.xsd: + acronym: MODS + field_of_science: + - library sciences + - humanities + id: mods-metadata-object-description-schema + identifier: + - type: local + value: msc:m97 + - type: local + value: https://doi.org/10.25504/FAIRsharing.o67X7e + - type: homepage + value: http://www.loc.gov/standards/mods/ + - type: namespace + value: http://www.loc.gov/mods/v3 + - type: namespace + value: http://www.loc.gov/mods/ + subject_areas: + - Bibliographic standards + - Information/library standards + title: MODS (Metadata Object Description Schema) +http://www.loc.gov/standards/mods/v3/mods-3-4.xsd: + acronym: MODS + field_of_science: + - library sciences + - humanities + id: mods-metadata-object-description-schema + identifier: + - type: local + value: msc:m97 + - type: local + value: https://doi.org/10.25504/FAIRsharing.o67X7e + - type: homepage + value: http://www.loc.gov/standards/mods/ + - type: namespace + value: http://www.loc.gov/mods/v3 + - type: namespace + value: http://www.loc.gov/mods/ + subject_areas: + - Bibliographic standards + - Information/library standards + title: MODS (Metadata Object Description Schema) +http://www.loc.gov/standards/mods/v3/mods-3-5.xsd: + acronym: MODS + field_of_science: + - library sciences + - humanities + id: mods-metadata-object-description-schema + identifier: + - type: local + value: msc:m97 + - type: local + value: https://doi.org/10.25504/FAIRsharing.o67X7e + - type: homepage + value: http://www.loc.gov/standards/mods/ + - type: namespace + value: http://www.loc.gov/mods/v3 + - type: namespace + value: http://www.loc.gov/mods/ + subject_areas: + - Bibliographic standards + - Information/library standards + title: MODS (Metadata Object Description Schema) +http://www.loc.gov/standards/mods/v3/mods-3-6.xsd: + acronym: MODS + field_of_science: + - library sciences + - humanities + id: mods-metadata-object-description-schema + identifier: + - type: local + value: msc:m97 + - type: 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premis + field_of_science: + - sciences + id: premis + identifier: + - type: local + value: msc:m31 + - type: local + value: https://doi.org/10.25504/FAIRsharing.27a0f4 + - type: homepage + value: http://www.loc.gov/standards/premis/ + - type: namespace + value: http://www.loc.gov/standards/premis + - type: schema + value: https://www.loc.gov/standards/premis/v3/premis-v3-0.xsd + - type: namespace + value: http://www.loc.gov/premis/v3 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-2.xsd + - type: namespace + value: info:lc/xmlns/premis-v2 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-3.xsd + - type: schema + value: https://www.loc.gov/standards/premis/v1/PREMIS-v1-1.xsd + - type: namespace + value: http://www.loc.gov/standards/premis/v1 + subject_areas: + - Multidisciplinary + title: PREMIS +http://www.loc.gov/standards/premis/: + acronym: premis + field_of_science: + - sciences + id: premis + identifier: + - type: local + value: msc:m31 + - type: local + value: https://doi.org/10.25504/FAIRsharing.27a0f4 + - type: homepage + value: http://www.loc.gov/standards/premis/ + - type: namespace + value: http://www.loc.gov/standards/premis + - type: schema + value: https://www.loc.gov/standards/premis/v3/premis-v3-0.xsd + - type: namespace + value: http://www.loc.gov/premis/v3 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-2.xsd + - type: namespace + value: info:lc/xmlns/premis-v2 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-3.xsd + - type: schema + value: https://www.loc.gov/standards/premis/v1/PREMIS-v1-1.xsd + - type: namespace + value: http://www.loc.gov/standards/premis/v1 + subject_areas: + - Multidisciplinary + title: PREMIS +http://www.loc.gov/standards/premis/v1: + acronym: premis + field_of_science: + - sciences + id: premis + identifier: + - type: local + value: msc:m31 + - type: local + value: https://doi.org/10.25504/FAIRsharing.27a0f4 + - type: homepage + value: http://www.loc.gov/standards/premis/ + - type: namespace + value: http://www.loc.gov/standards/premis + - type: schema + value: https://www.loc.gov/standards/premis/v3/premis-v3-0.xsd + - type: namespace + value: http://www.loc.gov/premis/v3 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-2.xsd + - type: namespace + value: info:lc/xmlns/premis-v2 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-3.xsd + - type: schema + value: https://www.loc.gov/standards/premis/v1/PREMIS-v1-1.xsd + - type: namespace + value: http://www.loc.gov/standards/premis/v1 + subject_areas: + - Multidisciplinary + title: PREMIS +http://www.loc.gov/standards/premis/v3/premis-3-0-final.pdf: + acronym: premis + field_of_science: + - sciences + id: premis + identifier: + - type: local + value: msc:m31 + - type: local + value: https://doi.org/10.25504/FAIRsharing.27a0f4 + - type: homepage + value: http://www.loc.gov/standards/premis/ + - 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acronym: META-SHARE + field_of_science: + - humanities + - linguistics + id: metashare-metadata + identifier: + - type: local + value: fuji:m12 + - type: local + value: https://fairsharing.org/4665 + - type: homepage + value: http://www.meta-share.org/p/93/Documentation#model + - type: namespace + value: http://www.ilsp.gr/META-XMLSchema + - type: namespace + value: http://w3id.org/meta-share/meta-share/ + subject_areas: + - Humanities + - Linguistics + title: Metadata Schema for the Description of Language Resources +http://www.molgenis.org/wiki/ObservStart: + acronym: + field_of_science: + - biological sciences + - natural sciences + id: observ-om + identifier: + - type: local + value: msc:m27 + - type: local + value: https://fairsharing.org/4682 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/observ-om + - type: homepage + value: http://www.molgenis.org/wiki/ObservStart + subject_areas: + - Biology + title: Observ-OM +http://www.mpi.nl/IMDI/Schema/IMDI: + acronym: IMDI + field_of_science: + - humanities + - linguistics + id: imdi-metadata-schema + identifier: + - type: local + value: fuji:m15 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2cfb88 + - type: namespace + value: http://www.mpi.nl/IMDI/Schema/IMDI + - type: namespace + value: http://www.mpi.nl/IMDI/schemas/xsd/ + - type: schema + value: https://www.mpi.nl/IMDI/Schema/IMDI_3.0.xsd + - type: homepage + value: https://archive.mpi.nl/forums/t/imdi-metadata-information/2933 + subject_areas: + - Humanities + - Linguistics + title: IMDI Metadata Standard +http://www.mpi.nl/IMDI/schemas/xsd/: + acronym: IMDI + field_of_science: + - humanities + - linguistics + id: imdi-metadata-schema + identifier: + - type: local + value: fuji:m15 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2cfb88 + - type: namespace + value: http://www.mpi.nl/IMDI/Schema/IMDI + - type: namespace + value: http://www.mpi.nl/IMDI/schemas/xsd/ + - type: schema + value: https://www.mpi.nl/IMDI/Schema/IMDI_3.0.xsd + - type: homepage + value: https://archive.mpi.nl/forums/t/imdi-metadata-information/2933 + subject_areas: + - Humanities + - Linguistics + title: IMDI Metadata Standard +http://www.ncbi.nlm.nih.gov/pubmed/23031277: + acronym: + field_of_science: + - genetics + - natural sciences + id: varioml + identifier: + - type: local + value: msc:m82 + - type: local + value: https://doi.org/10.25504/FAIRsharing.pxvkt0 + - type: homepage + value: http://www.ncbi.nlm.nih.gov/pubmed/23031277 + - type: namespace + value: http://varioml.org/xml/1.0 + subject_areas: + - Genetics + title: VarioML +http://www.ndltd.org/standards/metadata/etdms/1-0/: + acronym: ETD-MS + field_of_science: + - sciences + id: etdms-metadata-schema + identifier: + - type: local + value: fuji:m17 + - type: local + value: https://fairsharing.org/4660 + - type: homepage + value: https://ndltd.org/metadata/ + - type: namespace + value: http://www.ndltd.org/standards/metadata/etdms/1.1/ 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http://www.ukeof.org.uk/schema/1 + subject_areas: + - Biogeography + - Biological diversity + - Climatology + - Ecology + - Geology + - Hydrology + - Meteorology + - Remote sensing + - Soil sciences + title: UKEOF +http://www.virtualastronomy.org/avm_metadata.php: + acronym: AVM + field_of_science: + - astronomy + - natural sciences + id: avm-astronomy-visualization-metadata + identifier: + - type: local + value: msc:m3 + - type: local + value: https://doi.org/10.25504/FAIRsharing.338ze0 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/avm-astronomy-visualization-metadata + - type: homepage + value: http://www.virtualastronomy.org/avm_metadata.php + - type: namespace + value: http://www.communicatingastronomy.org/avm/1.0/ + subject_areas: + - Astronomy + title: AVM (Astronomy Visualization Metadata) +http://www.virtualastronomy.org/avm_metadata.php#2: + acronym: AVM + field_of_science: + - astronomy + - natural sciences + id: avm-astronomy-visualization-metadata + identifier: + - type: local + value: msc:m3 + - type: local + value: https://doi.org/10.25504/FAIRsharing.338ze0 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/avm-astronomy-visualization-metadata + - type: homepage + value: http://www.virtualastronomy.org/avm_metadata.php + - type: namespace + value: http://www.communicatingastronomy.org/avm/1.0/ + subject_areas: + - Astronomy + title: AVM (Astronomy Visualization Metadata) +http://www.w3.org/2001/sw/wiki/PROV: + acronym: + field_of_science: + - sciences + id: prov + identifier: + - type: local + value: msc:m33 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/prov + - type: local + value: https://doi.org/10.25504/FAIRsharing.fe7cda + - type: homepage + value: http://www.w3.org/2001/sw/wiki/PROV + - type: schema + value: http://www.w3.org/ns/prov.xsd + - type: namespace + value: http://www.w3.org/ns/prov# + subject_areas: + - Multidisciplinary + title: PROV +http://www.w3.org/2005/Atom: + acronym: ATOM + field_of_science: + - sciences + id: atom-syndication-format + identifier: + - type: local + value: fuji:m13 + - type: local + value: https://fairsharing.org/4648 + - type: namespace + value: https://www.w3.org/2005/Atom + - type: namespace + value: http://www.w3.org/2005/Atom + - type: homepage + value: https://datatracker.ietf.org/wg/atompub/about/ + subject_areas: + - Multidisciplinary + title: The Atom Syndication Format +http://www.w3.org/TR/prov-overview/: + acronym: + field_of_science: + - sciences + id: prov + identifier: + - type: local + value: msc:m33 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/prov + - type: local + value: https://doi.org/10.25504/FAIRsharing.fe7cda + - type: homepage + value: http://www.w3.org/2001/sw/wiki/PROV + - type: schema + value: http://www.w3.org/ns/prov.xsd + - type: namespace + value: http://www.w3.org/ns/prov# + subject_areas: + - Multidisciplinary + title: PROV +http://www.w3.org/TR/vocab-adms/: + acronym: ADMS + field_of_science: + - political sciences + - social sciences + id: asset-description-metadata-schema-adms + identifier: + - type: local + value: msc:m48 + - type: local + value: https://doi.org/10.25504/FAIRsharing.es2t25 + - type: homepage + value: http://www.w3.org/TR/vocab-adms/ + - type: namespace + value: http://www.w3.org/ns/adms# + subject_areas: + - Social policy + title: Asset Description Metadata Schema (ADMS) +http://www.w3.org/TR/vocab-data-cube/: + acronym: + field_of_science: + - statistics and probability + - natural sciences + id: rdf-data-cube-vocabulary + identifier: + - type: local + value: msc:m35 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/rdf-data-cube-vocabulary + - type: local + value: https://doi.org/10.25504/FAIRsharing.c3b573 + - type: homepage + value: http://www.w3.org/TR/vocab-data-cube/ + - type: namespace + value: http://purl.org/linked-data/cube# + subject_areas: + - Statistics + title: RDF Data Cube Vocabulary +http://www.w3.org/TR/vocab-dcat/: + acronym: DCAT + field_of_science: + - sciences + id: dcat-data-catalog-vocabulary + identifier: + - type: local + value: msc:m12 + - type: local + value: https://doi.org/10.25504/FAIRsharing.h4j3qm + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dcat-data-catalog-vocabulary + - type: homepage + value: http://www.w3.org/TR/vocab-dcat/ + - type: homepage + value: https://www.w3.org/2017/dxwg/wiki/Main_Page + - type: namespace + value: http://www.w3.org/ns/dcat# + subject_areas: + - Multidisciplinary + title: DCAT (Data Catalog Vocabulary) +http://www.w3.org/ns/adms#: + acronym: ADMS + field_of_science: + - political sciences + - social sciences + id: asset-description-metadata-schema-adms + identifier: + - type: local + value: msc:m48 + - type: local + value: https://doi.org/10.25504/FAIRsharing.es2t25 + - type: homepage + value: http://www.w3.org/TR/vocab-adms/ + - type: namespace + value: http://www.w3.org/ns/adms# + subject_areas: + - Social policy + title: Asset Description Metadata Schema (ADMS) +http://www.w3.org/ns/dcat#: + acronym: DCAT + field_of_science: + - sciences + id: dcat-data-catalog-vocabulary + identifier: + - type: local + value: msc:m12 + - type: local + value: https://doi.org/10.25504/FAIRsharing.h4j3qm + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dcat-data-catalog-vocabulary + - type: homepage + value: http://www.w3.org/TR/vocab-dcat/ + - type: homepage + value: https://www.w3.org/2017/dxwg/wiki/Main_Page + - type: namespace + value: http://www.w3.org/ns/dcat# + subject_areas: + - Multidisciplinary + title: DCAT (Data Catalog Vocabulary) +http://www.w3.org/ns/prov#: + acronym: + field_of_science: + - sciences + id: prov + identifier: + - type: local + value: msc:m33 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/prov + - type: local + value: https://doi.org/10.25504/FAIRsharing.fe7cda + - type: homepage + value: http://www.w3.org/2001/sw/wiki/PROV + - type: schema + value: http://www.w3.org/ns/prov.xsd + - type: namespace + value: http://www.w3.org/ns/prov# + subject_areas: + - Multidisciplinary + title: PROV +http://www.w3.org/ns/prov.xsd: + acronym: + field_of_science: + - sciences + id: prov + identifier: + - type: local + value: msc:m33 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/prov + - type: local + value: https://doi.org/10.25504/FAIRsharing.fe7cda + - type: homepage + value: http://www.w3.org/2001/sw/wiki/PROV + - type: schema + value: http://www.w3.org/ns/prov.xsd + - type: namespace + value: http://www.w3.org/ns/prov# + subject_areas: + - Multidisciplinary + title: PROV +http://www1.unece.org/stat/platform/display/metis/Generic+Statistical+Information+Model: + acronym: + field_of_science: + - statistics and probability + - natural sciences + id: gsim-generic-statistical-information-model + identifier: + - type: local + value: msc:m63 + - type: local + value: https://doi.org/10.25504/FAIRsharing.22bb25 + - type: homepage + value: http://www1.unece.org/stat/platform/display/metis/Generic+Statistical+Information+Model + subject_areas: + - Statistics + title: GSIM (Generic Statistical Information Model) +https://abcd.tdwg.org/xml/ABCD_2.06.xsd: + acronym: ABCD + field_of_science: + - biological sciences + - palaeontology + - genetics + - earth and related environmental sciences + - zoology + - geology + - botany + - natural sciences + id: abcd-access-biological-collection-data + identifier: + - type: local + value: msc:m1 + - type: local + value: https://doi.org/10.25504/FAIRsharing.kr3215 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/abcd-access-biological-collection-data + - type: homepage + value: http://wiki.tdwg.org/ABCD + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_3.0.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/3.0 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.1.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.1 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.06.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.06 + subject_areas: + - Biological diversity + - Botany + - Earth sciences + - Genetics + - Geology + - Palaeontology + - Zoology + title: ABCD (Access to Biological Collection Data) +https://abcd.tdwg.org/xml/ABCD_2.1.xsd: + acronym: ABCD + field_of_science: + - biological sciences + - palaeontology + - genetics + - earth and related environmental sciences + - zoology + - geology + - botany + - natural sciences + id: abcd-access-biological-collection-data + identifier: + - type: local + value: msc:m1 + - type: local + value: https://doi.org/10.25504/FAIRsharing.kr3215 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/abcd-access-biological-collection-data + - type: homepage + value: http://wiki.tdwg.org/ABCD + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_3.0.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/3.0 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.1.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.1 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.06.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.06 + subject_areas: + - Biological diversity + - Botany + - Earth sciences + - Genetics + - Geology + - Palaeontology + - Zoology + title: ABCD (Access to Biological Collection Data) +https://abcd.tdwg.org/xml/ABCD_3.0.xsd: + acronym: ABCD + field_of_science: + - biological sciences + - palaeontology + - genetics + - earth and related environmental sciences + - zoology + - geology + - botany + - natural sciences + id: abcd-access-biological-collection-data + identifier: + - type: local + value: msc:m1 + - type: local + value: https://doi.org/10.25504/FAIRsharing.kr3215 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/abcd-access-biological-collection-data + - type: homepage + value: http://wiki.tdwg.org/ABCD + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_3.0.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/3.0 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.1.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.1 + - type: schema + value: https://abcd.tdwg.org/xml/ABCD_2.06.xsd + - type: namespace + value: http://www.tdwg.org/schemas/abcd/2.06 + subject_areas: + - Biological diversity + - Botany + - Earth sciences + - Genetics + - Geology + - Palaeontology + - Zoology + title: ABCD (Access to Biological Collection Data) +https://ands.org.au/standards/rif-cs/registryObjects: + acronym: RIF-CS + field_of_science: + - sciences + id: rif-cs-registry-interchange-format-collections-and-services + identifier: + - type: local + value: msc:m98 + - type: local + value: https://doi.org/10.25504/FAIRsharing.reybx2 + - type: homepage + value: https://www.ands.org.au/online-services/rif-cs-schema + - type: schema + value: http://services.ands.org.au/documentation/rifcs/schema/registryObjects.xsd + - type: namespace + value: http://ands.org.au/standards/rif-cs/registryObjects + - type: namespace + value: https://ands.org.au/standards/rif-cs/registryObjects + subject_areas: + - Multidisciplinary + title: RIF-CS (Registry Interchange Format Ć¢ā‚¬ā€œ Collections and Services) +https://api.aiscr.cz/schema/oai_rdf/: + acronym: oai-rdf + field_of_science: [] + id: oai-rdf-schema + identifier: + - type: local + value: fuji:m38 + - type: schema + value: http://www.openarchives.org/OAI/2.0/rdf.xsd + - type: namespace + value: http://www.openarchives.org/OAI/2.0/rdf/ + - type: namespace + value: https://api.aiscr.cz/schema/oai_rdf/ + - type: homepage + value: http://www.openarchives.org/OAI/2.0/rdf/ + subject_areas: + title: OAI-RDF Schema +https://archive.mpi.nl/forums/t/imdi-metadata-information/2933: + acronym: IMDI + field_of_science: + - humanities + - linguistics + id: imdi-metadata-schema + identifier: + - type: local + value: fuji:m15 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2cfb88 + - type: namespace + value: http://www.mpi.nl/IMDI/Schema/IMDI + - type: namespace + value: http://www.mpi.nl/IMDI/schemas/xsd/ + - type: schema + value: https://www.mpi.nl/IMDI/Schema/IMDI_3.0.xsd + - type: homepage + value: https://archive.mpi.nl/forums/t/imdi-metadata-information/2933 + subject_areas: + - Humanities + - Linguistics + title: IMDI Metadata Standard +https://bitbucket.org/kanterae/isaconfig-dixa: + acronym: + field_of_science: + - medical and health sciences + - genetics + - natural sciences + - toxicology + id: isaconfig-dixa + identifier: + - type: local + value: msc:m68 + - type: homepage + value: https://bitbucket.org/kanterae/isaconfig-dixa + subject_areas: + - Genetics + - Toxicology + title: isaconfig-diXa +https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd: + acronym: CMDI + field_of_science: + - languages and literature + - humanities + - linguistics + id: cmd-component-metadata + identifier: + - type: local + value: fuji:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2e0599 + - type: namespace + value: http://www.clarin.eu/cmd/ + - type: namespace + value: https://www.clarin.eu/cmd/1 + - type: homepage + value: https://www.clarin.eu/content/component-metadata + - type: namespace + value: http://www.clarin.eu/cmd/1 + - type: schema + value: http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - type: schema + value: https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - type: schema + value: https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd + subject_areas: + - Linguistics + - Languages + title: Component MetaData Specification (CMDI) +https://cataloguestaging.ukeof.org.uk/schema/ukeof.1.0.0.xsd: + acronym: + field_of_science: + - engineering and technology + - biological sciences + - meteorology + - climatology + - ecology + - geology + - hydrology + - remote sensing + - soil sciences + - natural sciences + id: ukeof + identifier: + - type: local + value: msc:m40 + - type: local + value: https://doi.org/10.25504/FAIRsharing.9xytp6 + - type: homepage + value: http://www.ukeof.org.uk/ + - type: schema + value: https://cataloguestaging.ukeof.org.uk/schema/ukeof.1.0.0.xsd + - type: schema + value: https://www.ukeof.org.uk/schema/1/UKEOF_v1.0.xsd + - type: namespace + value: http://www.ukeof.org.uk/schema/1 + subject_areas: + - Biogeography + - Biological diversity + - Climatology + - Ecology + - Geology + - Hydrology + - Meteorology + - Remote sensing + - Soil sciences + title: UKEOF +https://cidoc.mini.icom.museum/working-groups/lido/lido-overview/about-lido/what-is-lido/: + acronym: LIDO + field_of_science: + - humanities + id: lido-lightweight-information-describing-objects + identifier: + - type: local + value: fuji:m18 + - type: local + value: https://doi.org/10.25504/FAIRsharing.73558b + - type: schema + value: www.lido-schema.org/schema/latest/lido.xsd + - type: schema + value: www.lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: schema + value: http://www.lido-schema.org/schema/v1.0/lido-v1.0.xsd + - type: schema + value: http://lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: namespace + value: http://www.lido-schema.org + - type: homepage + value: http://www.lido-schema.org + subject_areas: + - Humanities + - Cultural heritage + title: LIDO, Lightweight Information Describing Objects +? https://clarivate.com/products/scientific-and-academic-research/research-discovery-and-workflow-solutions/webofscience-platform/data-citation-index/ +: acronym: dci + field_of_science: + - library sciences + - humanities + id: clarivate-data-citation-index-schema + identifier: + - type: local + value: fuji:m39 + - type: namespace + value: https://clarivate.com/products/web-of-science/web-science-form/data-citation-index/ + - type: homepage + value: https://clarivate.com/products/scientific-and-academic-research/research-discovery-and-workflow-solutions/webofscience-platform/data-citation-index/ + subject_areas: + - Bibliographic standards + title: Clarivate Data Citation Index Schema +https://clarivate.com/products/web-of-science/web-science-form/data-citation-index/: + acronym: dci + field_of_science: + - library sciences + - humanities + id: clarivate-data-citation-index-schema + identifier: + - type: local + value: fuji:m39 + - type: namespace + value: https://clarivate.com/products/web-of-science/web-science-form/data-citation-index/ + - type: homepage + value: https://clarivate.com/products/scientific-and-academic-research/research-discovery-and-workflow-solutions/webofscience-platform/data-citation-index/ + subject_areas: + - Bibliographic standards + title: Clarivate Data Citation Index Schema +https://cocoon.huma-num.fr/schemas/dcq.xsd: + acronym: QDC + field_of_science: + - sciences + id: dublin-core-qualified + identifier: + - type: local + value: fuji:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3nx7t + - type: homepage + value: https://www.dublincore.org/specifications/dublin-core/dcmes-qualifiers/ + - type: namespace + value: urn:dc:qdc:container + - type: namespace + value: figshare:oai:qdc + - type: namespace + value: http://naca.central.cranfield.ac.uk/ethos-oai/2.0/ + - type: namespace + value: http://ora.ox.ac.uk/oai-pmh/metadata-formats/solo_dc 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protocol-data-element-definitions + identifier: + - type: local + value: msc:m32 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/protocol-data-element-definitions + - type: local + value: https://doi.org/10.25504/FAIRsharing.7e962d + - type: homepage + value: http://clinicaltrials.gov/ct2/manage-recs/resources + - type: schema + value: https://prsinfo.clinicaltrials.gov/ProtocolRecordSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/prs + - type: schema + value: https://prsinfo.clinicaltrials.gov/RRSUploadSchema.xsd + - type: namespace + value: http://clinicaltrials.gov/rrs + subject_areas: + - Clinical medicine + title: Protocol Data Element Definitions +https://prsinfo.clinicaltrials.gov/RRSUploadSchema.xsd: + acronym: + field_of_science: + - medical and health sciences + - clinical medicine + id: protocol-data-element-definitions + identifier: + - type: local + value: msc:m32 + - type: local + value: 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and literature + - humanities + - linguistics + id: cmd-component-metadata + identifier: + - type: local + value: fuji:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2e0599 + - type: namespace + value: http://www.clarin.eu/cmd/ + - type: namespace + value: https://www.clarin.eu/cmd/1 + - type: homepage + value: https://www.clarin.eu/content/component-metadata + - type: namespace + value: http://www.clarin.eu/cmd/1 + - type: schema + value: http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - type: schema + value: https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - type: schema + value: https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd + subject_areas: + - Linguistics + - Languages + title: Component MetaData Specification (CMDI) +https://quake.ethz.ch/quakeml: + acronym: QuakeML + field_of_science: + - geophysics + - earth and related environmental sciences + - natural sciences + id: quakeml + identifier: + - type: local + value: fuji:m9 + - type: local + value: https://fairsharing.org/1444 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/2.0 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.2 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.1 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.0.1 + - type: namespace + value: http://quakeml.org/xmlns/quakeml/1.0 + - type: homepage + value: https://quake.ethz.ch/quakeml + subject_areas: + - Earth sciences + - Geophysics + title: QuakeML +https://resources.bepress.com/OAI/2.0/qualified-dublin-core/: + acronym: oai_dc + field_of_science: + - sciences + id: oai-dublin-core-schema + identifier: + - type: local + value: fuji:m44 + - type: local + value: https://doi.org/10.25504/FAIRsharing.0417cf + - type: namespace + value: https://resources.bepress.com/OAI/2.0/qualified-dublin-core/ + - type: schema + value: http://www.openarchives.org/OAI/2.0/oai_dc.xsd + - type: namespace + value: http://www.openarchives.org/OAI/2.0/oai_dc/ + - type: namespace + value: http://www.openarchives.org/OAI/2.0/oai_dc + - type: homepage + value: http://www.openarchives.org/OAI/openarchivesprotocol.html#dublincore + subject_areas: + - Multidisciplinary + title: Open Archive Initiative Dublin Core (OAI DC) +https://schema.org: + acronym: schemaorg + field_of_science: + - sciences + id: schemaorg + identifier: + - type: local + value: https://doi.org/10.25504/FAIRsharing.hzdzq8 + - type: local + value: msc:m101 + - type: namespace + value: https://schema.org + - type: namespace + value: http://schema.org + - type: homepage + value: https://schema.org/docs/schemas.html + subject_areas: + - Multidisciplinary + title: Schema.org 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technology + - chemical sciences + - meteorology + - geology + - remote sensing + - natural sciences + id: observations-and-measurements + identifier: + - type: local + value: msc:m28 + - type: local + value: https://doi.org/10.25504/FAIRsharing.4ehmy9 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/observations-and-measurements + - type: homepage + value: http://www.opengeospatial.org/standards/om + - type: namespace + value: http://schemas.opengis.net/om/2.0/ + - type: schema + value: https://schemas.opengis.net/om/2.0/observation.xsd + - type: schema + value: https://schemas.opengis.net/om/1.0.0/observation.xsd + - type: namespace + value: http://www.opengis.net/om/1.0 + subject_areas: + - Chemistry + - Geology + - Meteorology + - Remote sensing + title: Observations and Measurements +https://schemas.opengis.net/om/2.0/observation.xsd: + acronym: + field_of_science: + - engineering and technology + - chemical sciences + - meteorology + - geology + - remote sensing + - natural sciences + id: observations-and-measurements + identifier: + - type: local + value: msc:m28 + - type: local + value: https://doi.org/10.25504/FAIRsharing.4ehmy9 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/observations-and-measurements + - type: homepage + value: http://www.opengeospatial.org/standards/om + - type: namespace + value: http://schemas.opengis.net/om/2.0/ + - type: schema + value: https://schemas.opengis.net/om/2.0/observation.xsd + - type: schema + value: https://schemas.opengis.net/om/1.0.0/observation.xsd + - type: namespace + value: http://www.opengis.net/om/1.0 + subject_areas: + - Chemistry + - Geology + - Meteorology + - Remote sensing + title: Observations and Measurements +https://schemas.opengis.net/waterml/2.0/waterml2.xsd: + acronym: + field_of_science: + - natural sciences + - hydrology + id: waterml + identifier: + - type: local + value: msc:m83 + - type: local + value: 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schema + value: https://spase-group.org/data/schema/spase-2.4.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.5.0.xsd + subject_areas: + - Astronomical systems + - Astronomy + - Sun + title: SPASE Data Model +https://spase-group.org/data/schema/spase-2.4.2.xsd: + acronym: + field_of_science: + - astronomy + - natural sciences + id: spase-data-model + identifier: + - type: local + value: msc:m39 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/spase-data-model + - type: local + value: https://doi.org/10.25504/FAIRsharing.f5d440 + - type: homepage + value: http://www.spase-group.org/data/ + - type: namespace + value: http://www.spase-group.org/data/schema + - type: schema + value: https://spase-group.org/data/schema/spase-1.0.0.xsd + - type: schema + value: 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schema + value: https://spase-group.org/data/schema/spase-2.2.8.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.9.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.5.0.xsd + subject_areas: + - Astronomical systems + - Astronomy + - Sun + title: SPASE Data Model +https://spase-group.org/data/schema/spase-2.5.0.xsd: + acronym: + field_of_science: + - astronomy + - natural sciences + id: spase-data-model + identifier: + - type: local + value: msc:m39 + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/spase-data-model + - type: local + value: https://doi.org/10.25504/FAIRsharing.f5d440 + - type: homepage + value: http://www.spase-group.org/data/ + - type: namespace + value: http://www.spase-group.org/data/schema + - type: schema + value: https://spase-group.org/data/schema/spase-1.0.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.1.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.2.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.2.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.2.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-1.3.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.0.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.1.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.3.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.4.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.6.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.8.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.2.9.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.3.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.0.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.1.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.4.2.xsd + - type: schema + value: https://spase-group.org/data/schema/spase-2.5.0.xsd + subject_areas: + - Astronomical systems + - Astronomy + - Sun + title: SPASE Data Model +https://w3id.org/kim/hs-oer-lom-profil/latest/schemas/hs-oer-lom.xsd: + acronym: LOM + field_of_science: [] + id: lom-higher-education-schema + identifier: + - type: local + value: fuji:m24 + - type: local + value: https://fairsharing.org/4664 + - type: homepage + value: http://www.imsglobal.org/metadata/index.html + - type: namespace + value: http://ltsc.ieee.org/xsd/LOMv1p0 + - type: namespace + value: http://ltsc.ieee.org/2002/09/lom-base# + - type: namespace + value: https://www.oerbw.de/hsoerlom + - type: schema + value: http://www.rdn.ac.uk/oai/lom/lom.xsd + - type: schema + value: https://w3id.org/kim/hs-oer-lom-profil/latest/schemas/hs-oer-lom.xsd + subject_areas: + title: Learning Object Metadata (LOM) +https://w3id.org/ro/crate: + acronym: + field_of_science: + - sciences + id: ro-crate + identifier: + - type: local + value: https://doi.org/10.25504/FAIRsharing.wUoZKE + - type: local + value: msc:m102 + - type: homepage + value: https://w3id.org/ro/crate + - type: namespace + value: https://w3id.org/ro/crate/1.1/context + - type: namespace + value: https://w3id.org/ro/crate/1.0/context + - type: namespace + value: https://w3id.org/ro/crate/0.2/context + subject_areas: + - Multidisciplinary + title: RO-Crate +https://w3id.org/ro/crate/0.2/context: + acronym: + field_of_science: + - sciences + id: ro-crate + identifier: + - type: local + value: https://doi.org/10.25504/FAIRsharing.wUoZKE + - type: local + value: msc:m102 + - type: homepage + value: https://w3id.org/ro/crate + - type: namespace + value: https://w3id.org/ro/crate/1.1/context + - type: namespace + value: https://w3id.org/ro/crate/1.0/context + - type: namespace + value: https://w3id.org/ro/crate/0.2/context + subject_areas: + - Multidisciplinary + title: RO-Crate +https://w3id.org/ro/crate/1.0/context: + acronym: + field_of_science: + - sciences + id: ro-crate + identifier: + - type: local + value: https://doi.org/10.25504/FAIRsharing.wUoZKE + - type: local + value: msc:m102 + - type: homepage + value: https://w3id.org/ro/crate + - type: namespace + value: https://w3id.org/ro/crate/1.1/context + - type: namespace + value: https://w3id.org/ro/crate/1.0/context + - type: namespace + value: https://w3id.org/ro/crate/0.2/context + subject_areas: + - Multidisciplinary + title: RO-Crate +https://w3id.org/ro/crate/1.1: + acronym: + field_of_science: + - sciences + id: ro-crate + identifier: + - type: local + value: https://doi.org/10.25504/FAIRsharing.wUoZKE + - type: local + value: msc:m102 + - type: homepage + value: https://w3id.org/ro/crate + - type: namespace + value: https://w3id.org/ro/crate/1.1/context + - type: namespace + value: https://w3id.org/ro/crate/1.0/context + - type: namespace + value: https://w3id.org/ro/crate/0.2/context + subject_areas: + - Multidisciplinary + title: RO-Crate +https://w3id.org/ro/crate/1.1/context: + acronym: + field_of_science: + - sciences + id: ro-crate + identifier: + - type: local + value: https://doi.org/10.25504/FAIRsharing.wUoZKE + - type: local + value: msc:m102 + - type: homepage + value: https://w3id.org/ro/crate + - type: namespace + value: https://w3id.org/ro/crate/1.1/context + - type: namespace + value: https://w3id.org/ro/crate/1.0/context + - type: namespace + value: https://w3id.org/ro/crate/0.2/context + subject_areas: + - Multidisciplinary + title: RO-Crate +https://wiki.dnb.de/display/URNSERVDOK/xepicur+-+XML-Datentransferformat+zur+Verwaltung+von+URN: + acronym: epicur + field_of_science: [] + id: epicur-metadata-schema + identifier: + - type: local + value: fuji:m21 + - type: local + value: https://fairsharing.org/4659 + - type: namespace + value: urn:nbn:de:1111-2004033116 + - type: schema + value: https://files.dnb.de/Web/xepicur.xsd + - type: homepage + value: https://wiki.dnb.de/display/URNSERVDOK/xepicur+-+XML-Datentransferformat+zur+Verwaltung+von+URN + subject_areas: + title: xepicur +https://wiki.eprints.org/w/XML_Export_Format: + acronym: EPrints + field_of_science: + - sciences + id: eprints-xml + identifier: + - type: local + value: fuji:m23 + - type: namespace + value: http://eprints.org/ep2/data/2.0 + - type: homepage + value: https://wiki.eprints.org/w/XML_Export_Format + subject_areas: + - Multidisciplinary + title: EPrints XML +https://wiki.esipfed.org/Category:Attribute_Conventions_Dataset_Discovery: + acronym: + field_of_science: [] + id: netcdf-attribute-convention-for-dataset-discovery + identifier: + - type: local + value: msc:m89 + - type: homepage + value: https://wiki.esipfed.org/Category:Attribute_Conventions_Dataset_Discovery + subject_areas: + title: NetCDF Attribute Convention for Dataset Discovery +https://wiki.lyrasis.org/display/DSPACE/: + acronym: dspace-dim + field_of_science: [] + id: dim-dspace-intermediate-format + identifier: + - type: local + value: fuji:m36 + - type: namespace + value: http://www.dspace.org/xmlns/dspace/dim + - type: homepage + value: https://wiki.lyrasis.org/display/DSPACE/ + subject_areas: + title: DSpace Intermediate Metadata Format +https://wiki.nci.nih.gov/display/ICR/ISA-TAB-Nano#ISA-TAB-Nano-title: + acronym: + field_of_science: + - biochemistry + - biological sciences + - natural sciences + - engineering and technology + id: isa-tab-nano + identifier: + - type: local + value: msc:m67 + - type: local + value: https://doi.org/10.25504/FAIRsharing.njqq5b + - type: homepage + value: https://wiki.nci.nih.gov/display/ICR/ISA-TAB-Nano#ISA-TAB-Nano-title + subject_areas: + - Biochemicals + - Biotechnology + title: ISA-TAB Nano +https://wis.wmo.int/2012/metadata/: + acronym: + field_of_science: + - meteorology + - natural sciences + id: wmo-core-metadata-profile + identifier: + - type: local + value: msc:m84 + - type: local + value: https://doi.org/10.25504/FAIRsharing.5e7bdc + - type: homepage + value: https://wis.wmo.int/2012/metadata/ + subject_areas: + - Meteorology + title: WMO Core Metadata Profile +https://www.ands.org.au/online-services/rif-cs-schema: + acronym: RIF-CS + field_of_science: + - sciences + id: rif-cs-registry-interchange-format-collections-and-services + identifier: + - type: local + value: msc:m98 + - type: local + value: https://doi.org/10.25504/FAIRsharing.reybx2 + - type: homepage + value: https://www.ands.org.au/online-services/rif-cs-schema + - type: schema + value: http://services.ands.org.au/documentation/rifcs/schema/registryObjects.xsd + - type: namespace + value: http://ands.org.au/standards/rif-cs/registryObjects + - type: namespace + value: https://ands.org.au/standards/rif-cs/registryObjects + subject_areas: + - Multidisciplinary + title: RIF-CS (Registry Interchange Format Ć¢ā‚¬ā€œ Collections and Services) +https://www.anzlic.gov.au/resources/anzlic-metadata-profile: + acronym: ANZLIC + field_of_science: + - cartography + - physical geography + - natural sciences + id: anzlic-metadata-profile + identifier: + - type: local + value: msc:m46 + - type: local + value: https://fairsharing.org/820 + - type: homepage + value: https://www.anzlic.gov.au/resources/anzlic-metadata-profile + subject_areas: + - Cartography + - Geography + - Topography + title: ANZLIC Metadata Profile +https://www.ariadne-infrastructure.eu/resource/ao/: + acronym: ACDM + field_of_science: + - humanities + - archaeology + id: ariadne-dataset-catalogue-model + identifier: + - type: local + value: fuji:m19 + - type: local + value: https://fairsharing.org/4647 + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - type: namespace + value: http://registry.ariadne-infrastructure.eu/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/ + - type: namespace + value: http://ariadne-registry.dcu.gr/schema-definition + - type: homepage + value: http://ariadne-registry.dcu.gr/ + subject_areas: + - Archaeology + title: ARIADNE Dataset Catalogue Model (ACDM) +https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/: + acronym: ACDM + field_of_science: + - humanities + - archaeology + id: ariadne-dataset-catalogue-model + identifier: + - type: local + value: fuji:m19 + - type: local + value: https://fairsharing.org/4647 + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.7/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.8/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/6.9/acdm.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema_definition/sample_ariadne_xml.xsd + - type: schema + value: http://ariadne-registry.dcu.gr/schema-definition/sample_ariadne_xml.xsd + - type: namespace + value: http://registry.ariadne-infrastructure.eu/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/cat/1.1/ + - type: namespace + value: https://www.ariadne-infrastructure.eu/resource/ao/ + - type: namespace + value: http://ariadne-registry.dcu.gr/schema-definition + - type: homepage + value: http://ariadne-registry.dcu.gr/ + subject_areas: + - Archaeology + title: ARIADNE Dataset Catalogue Model (ACDM) +https://www.bodc.ac.uk/data/information_and_inventories/edmed/: + acronym: + field_of_science: + - oceanography + - glaciology + - meteorology + - climatology + - ecology + - hydrology + - environmental sciences + - hydrogeology + - soil sciences + - natural sciences + id: edmed-metadata-profile + identifier: + - type: local + value: msc:m58 + - type: local + value: https://doi.org/10.25504/FAIRsharing.ed7f20 + - type: homepage + value: https://www.bodc.ac.uk/data/information_and_inventories/edmed/ + - type: schema + value: EDMED_sdn_V1.2.xsd + subject_areas: + - Climatology + - Ecology + - Environmental sciences + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Soil sciences + title: EDMED Metadata Profile +https://www.clarin.eu/cmd/1: + acronym: CMDI + field_of_science: + - languages and literature + - humanities + - linguistics + id: cmd-component-metadata + identifier: + - type: local + value: fuji:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2e0599 + - type: namespace + value: http://www.clarin.eu/cmd/ + - type: namespace + value: https://www.clarin.eu/cmd/1 + - type: homepage + value: https://www.clarin.eu/content/component-metadata + - type: namespace + value: http://www.clarin.eu/cmd/1 + - type: schema + value: http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - type: schema + value: https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - type: schema + value: https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd + subject_areas: + - Linguistics + - Languages + title: Component MetaData Specification (CMDI) +https://www.clarin.eu/content/component-metadata: + acronym: CMDI + field_of_science: + - languages and literature + - humanities + - linguistics + id: cmd-component-metadata + identifier: + - type: local + value: fuji:m6 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2e0599 + - type: namespace + value: http://www.clarin.eu/cmd/ + - type: namespace + value: https://www.clarin.eu/cmd/1 + - type: homepage + value: https://www.clarin.eu/content/component-metadata + - type: namespace + value: http://www.clarin.eu/cmd/1 + - type: schema + value: http://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/profiles/clarin.eu:cr1:p_1290431694484/xsd + - type: schema + value: https://infra.clarin.eu/CMDI/1.x/xsd/cmd-envelop.xsd + - type: schema + value: http://www.clarin.eu/cmd/1/profiles/clarin.eu:cr1:p_1290431694484 + - type: schema + value: https://catalog.clarin.eu/ds/ComponentRegistry/rest/registry/1.x/profiles/clarin.eu:cr1:p_1290431694484/xsd + subject_areas: + - Linguistics + - Languages + title: Component MetaData Specification (CMDI) +https://www.da-ra.de/downloads#metadata: + acronym: da|ra + field_of_science: + - political sciences + 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schema + value: https://www.loc.gov/standards/premis/v1/PREMIS-v1-1.xsd + - type: namespace + value: http://www.loc.gov/standards/premis/v1 + subject_areas: + - Multidisciplinary + title: PREMIS +https://www.loc.gov/standards/premis/v3/premis-v3-0.xsd: + acronym: premis + field_of_science: + - sciences + id: premis + identifier: + - type: local + value: msc:m31 + - type: local + value: https://doi.org/10.25504/FAIRsharing.27a0f4 + - type: homepage + value: http://www.loc.gov/standards/premis/ + - type: namespace + value: http://www.loc.gov/standards/premis + - type: schema + value: https://www.loc.gov/standards/premis/v3/premis-v3-0.xsd + - type: namespace + value: http://www.loc.gov/premis/v3 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-2.xsd + - type: namespace + value: info:lc/xmlns/premis-v2 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-3.xsd + - type: schema + value: https://www.loc.gov/standards/premis/v1/PREMIS-v1-1.xsd + - type: namespace + value: http://www.loc.gov/standards/premis/v1 + subject_areas: + - Multidisciplinary + title: PREMIS +https://www.mpi.nl/IMDI/Schema/IMDI_3.0.xsd: + acronym: IMDI + field_of_science: + - humanities + - linguistics + id: imdi-metadata-schema + identifier: + - type: local + value: fuji:m15 + - type: local + value: https://doi.org/10.25504/FAIRsharing.2cfb88 + - type: namespace + value: http://www.mpi.nl/IMDI/Schema/IMDI + - type: namespace + value: http://www.mpi.nl/IMDI/schemas/xsd/ + - type: schema + value: https://www.mpi.nl/IMDI/Schema/IMDI_3.0.xsd + - type: homepage + value: https://archive.mpi.nl/forums/t/imdi-metadata-information/2933 + subject_areas: + - Humanities + - Linguistics + title: IMDI Metadata Standard +https://www.oclc.org/research/activities/registry.html: + acronym: CTX + field_of_science: + - sciences + id: openurl-contextobject + identifier: + - type: local + value: fuji:m7 + - type: local + value: https://fairsharing.org/4686 + - type: namespace + value: info:ofi/fmt:xml:xsd:ctx + - type: namespace + value: info:ofi/fmt:kev:mtx:ctx + - type: homepage + value: https://www.oclc.org/research/activities/registry.html + subject_areas: + - Multidisciplinary + title: The OpenURL ContextObject Format +https://www.oerbw.de/hsoerlom: + acronym: LOM + field_of_science: [] + id: lom-higher-education-schema + identifier: + - type: local + value: fuji:m24 + - type: local + value: https://fairsharing.org/4664 + - type: homepage + value: http://www.imsglobal.org/metadata/index.html + - type: namespace + value: http://ltsc.ieee.org/xsd/LOMv1p0 + - type: namespace + value: http://ltsc.ieee.org/2002/09/lom-base# + - type: namespace + value: https://www.oerbw.de/hsoerlom + - type: schema + value: http://www.rdn.ac.uk/oai/lom/lom.xsd + - type: schema + value: https://w3id.org/kim/hs-oer-lom-profil/latest/schemas/hs-oer-lom.xsd + subject_areas: + title: Learning Object Metadata (LOM) +https://www.ogc.org/standard/cat/: + acronym: CSW + field_of_science: + - cartography + - earth and related environmental sciences + - natural sciences + id: csw-catalogue-schema + identifier: + - type: local + value: fuji:m32 + - type: local + value: https://fairsharing.org/4650 + - type: schema + value: http://schemas.opengis.net/csw/2.0.2/CSW-publication.xsd + - type: namespace + value: http://www.opengis.net/cat/csw/2.0.2 + - type: namespace + value: http://www.opengis.net/cat/csw/3.0 + - type: schema + value: http://schemas.opengis.net/cat/csw/3.0/cswAll.xsd + - type: homepage + value: https://www.ogc.org/standard/cat/ + subject_areas: + - Cartography + - Earth sciences + title: Catalogue Service for the Web +https://www.ogc.org/standards/gml: + acronym: + field_of_science: + - earth and related environmental sciences + - cartography + - oceanography + - glaciology + - meteorology + - climatology + - geology + - hydrology + - physical geography + - hydrogeology + - natural sciences + id: iso-19136 + identifier: + - type: local + value: fuji:m3 + - type: local + value: https://doi.org/10.25504/FAIRsharing.d69ee0 + - type: homepage + value: www.iso.org/iso/iso_catalogue/catalogue_tc/catalogue_detail.htm?csnumber=32554 + - type: namespace + value: http://www.opengis.net/gml/3.2 + - type: namespace + value: http://schemas.opengis.net/gml/3.2.1/gml.xsd + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Geology + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Topography + title: Geography Markup Language +https://www.openaire.eu/cerif-profile/1.1/: + acronym: CERIF + field_of_science: + - sciences + id: cerif + identifier: + - type: local + value: msc:m4 + - type: local + value: https://doi.org/10.25504/FAIRsharing.6945dq + - type: homepage + value: http://www.eurocris.org/cerif/main-features-cerif + - type: schema + value: 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- type: schema + value: https://www.openaire.eu/schema/1.0/oaf-1.0.xsd + - type: homepage + value: https://graph.openaire.eu/ + subject_areas: + - Multidisciplinary + title: OpenAIRE Research Graph +https://www.openaire.eu/schema/cris/1.1/openaire-cerif-profile.xsd: + acronym: CERIF + field_of_science: + - sciences + id: cerif + identifier: + - type: local + value: msc:m4 + - type: local + value: https://doi.org/10.25504/FAIRsharing.6945dq + - type: homepage + value: http://www.eurocris.org/cerif/main-features-cerif + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.6/CERIF_1.6_2.xsd + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.5/CERIF_1.5_1.xsd + - type: schema + value: https://www.openaire.eu/schema/cris/1.1/openaire-cerif-profile.xsd + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.6-2 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.5-1 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.4-0 + - type: namespace + value: http://www.eurocris.org/ontologies/cerif/1.3# + - type: namespace + value: https://www.openaire.eu/cerif-profile/1.1/ + subject_areas: + - Multidisciplinary + title: CERIF (Common European Research Information Format) +https://www.openaire.eu/schema/latest/doc/oaf.html: + acronym: OpenAIRE_RG + field_of_science: + - sciences + id: openaire-research-graph + identifier: + - type: local + value: fuji:m20 + - type: local + value: https://fairsharing.org/4684 + - type: namespace + value: http://namespace.openaire.eu/oaf + - type: schema + value: https://www.openaire.eu/schema/1.0/oaf-1.0.xsd + - type: homepage + value: https://graph.openaire.eu/ + subject_areas: + - Multidisciplinary + title: OpenAIRE Research Graph +https://www.openaire.eu/schema/repo-lit/4.0/openaire.xsd: + acronym: OpenAIRE_G + field_of_science: + - sciences + id: openaire-guidelines + identifier: + - type: local + value: msc:m92 + - type: local + value: https://doi.org/10.25504/FAIRsharing.123197 + - type: homepage + value: https://guidelines.openaire.eu/ + - type: schema + value: https://www.openaire.eu/schema/repo-lit/4.0/openaire.xsd + - type: namespace + value: http://namespace.openaire.eu/schema/oaire/ + - type: namespace + value: oai_openaire + - type: namespace + value: https://openaire.eu + subject_areas: + - Multidisciplinary + title: OpenAIRE Guidelines +https://www.rioxx.net/: + acronym: rioxx + field_of_science: + - sciences + id: rioxx-metadata-application-profile + identifier: + - type: local + value: fuji:m5 + - type: local + value: https://fairsharing.org/4690 + - type: namespace + value: http://www.rioxx.net/schema/v2.0/rioxx/ + - type: homepage + value: https://www.rioxx.net/ + - type: namespace + value: https://www.rioxx.net/schema/v2.0/rioxxterms/ + - type: namespace + value: http://docs.rioxx.net/schema/v1.0/ + subject_areas: + - Multidisciplinary + title: RIOXX Metadata Application Profile +https://www.rioxx.net/schema/v2.0/rioxxterms/: + acronym: rioxx + field_of_science: + - sciences + id: rioxx-metadata-application-profile + identifier: + - type: local + value: fuji:m5 + - type: local + value: https://fairsharing.org/4690 + - type: namespace + value: http://www.rioxx.net/schema/v2.0/rioxx/ + - type: homepage + value: https://www.rioxx.net/ + - type: namespace + value: https://www.rioxx.net/schema/v2.0/rioxxterms/ + - type: namespace + value: http://docs.rioxx.net/schema/v1.0/ + subject_areas: + - Multidisciplinary + title: RIOXX Metadata Application Profile +https://www.tei-c.org/release/doc/tei-p5-doc/en/html/index.html: + acronym: TEI + field_of_science: + - humanities + - languages and literature + - history + id: tei-text-encoding-initiative-guidelines + identifier: + - type: local + value: msc:m99 + - type: local + value: https://doi.org/10.25504/FAIRsharing.87b86e + - type: homepage + value: http://www.tei-c.org/Guidelines/P5/ + - type: namespace + value: http://www.tei-c.org/ns/1.0 + subject_areas: + - History + - Languages + title: TEI (Text Encoding Initiative) Guidelines +https://www.ukeof.org.uk/schema/1/UKEOF_v1.0.xsd: + acronym: + field_of_science: + - engineering and technology + - biological sciences + - meteorology + - climatology + - ecology + - geology + - hydrology + - remote sensing + - soil sciences + - natural sciences + id: ukeof + identifier: + - type: local + value: msc:m40 + - type: local + value: https://doi.org/10.25504/FAIRsharing.9xytp6 + - type: homepage + value: http://www.ukeof.org.uk/ + - type: schema + value: https://cataloguestaging.ukeof.org.uk/schema/ukeof.1.0.0.xsd + - type: schema + value: https://www.ukeof.org.uk/schema/1/UKEOF_v1.0.xsd + - type: namespace + value: http://www.ukeof.org.uk/schema/1 + subject_areas: + - Biogeography + - Biological diversity + - Climatology + - Ecology + - Geology + - Hydrology + - Meteorology + - Remote sensing + - Soil sciences + title: UKEOF +https://www.w3.org/2005/Atom: + acronym: ATOM + field_of_science: + - sciences + id: atom-syndication-format + identifier: + - type: local + value: fuji:m13 + - type: local + value: https://fairsharing.org/4648 + - type: namespace + value: https://www.w3.org/2005/Atom + - type: namespace + value: http://www.w3.org/2005/Atom + - type: homepage + value: https://datatracker.ietf.org/wg/atompub/about/ + subject_areas: + - Multidisciplinary + title: The Atom Syndication Format +https://www.w3.org/2017/dxwg/wiki/Main_Page: + acronym: DCAT + field_of_science: + - sciences + id: dcat-data-catalog-vocabulary + identifier: + - type: local + value: msc:m12 + - type: local + value: https://doi.org/10.25504/FAIRsharing.h4j3qm + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dcat-data-catalog-vocabulary + - type: homepage + value: http://www.w3.org/TR/vocab-dcat/ + - type: homepage + value: https://www.w3.org/2017/dxwg/wiki/Main_Page + - type: namespace + value: http://www.w3.org/ns/dcat# + subject_areas: + - Multidisciplinary + title: DCAT (Data Catalog Vocabulary) +https://www.w3.org/Submission/prism: + acronym: PRISM + field_of_science: [] + id: prism-publishing-industry-standard-metadata + identifier: + - type: local + value: fuji:m27 + - type: local + value: https://fairsharing.org/4689 + - type: homepage + value: https://www.w3.org/Submission/prism + - type: namespace + value: http://prismstandard.org/namespaces/pam/0.0/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/1.2/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/2.0/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/2.1/ + - type: namespace + value: http://prismstandard.org/namespaces/pam/3.0/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/1.2/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/2.0/ + - type: namespace + value: http://prismstandard.org/namespaces/basic/1.0/ + 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field_of_science: + - sciences + id: dcat-data-catalog-vocabulary + identifier: + - type: local + value: msc:m12 + - type: local + value: https://doi.org/10.25504/FAIRsharing.h4j3qm + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dcat-data-catalog-vocabulary + - type: homepage + value: http://www.w3.org/TR/vocab-dcat/ + - type: homepage + value: https://www.w3.org/2017/dxwg/wiki/Main_Page + - type: namespace + value: http://www.w3.org/ns/dcat# + subject_areas: + - Multidisciplinary + title: DCAT (Data Catalog Vocabulary) +https://www.w3.org/ns/dcat.ttl: + acronym: DCAT + field_of_science: + - sciences + id: dcat-data-catalog-vocabulary + identifier: + - type: local + value: msc:m12 + - type: local + value: https://doi.org/10.25504/FAIRsharing.h4j3qm + - type: local + value: http://www.dcc.ac.uk/resources/metadata-standards/dcat-data-catalog-vocabulary + - type: homepage + value: http://www.w3.org/TR/vocab-dcat/ + - type: homepage + value: https://www.w3.org/2017/dxwg/wiki/Main_Page + - type: namespace + value: http://www.w3.org/ns/dcat# + subject_areas: + - Multidisciplinary + title: DCAT (Data Catalog Vocabulary) +info:lc/xmlns/premis-v2: + acronym: premis + field_of_science: + - sciences + id: premis + identifier: + - type: local + value: msc:m31 + - type: local + value: https://doi.org/10.25504/FAIRsharing.27a0f4 + - type: homepage + value: http://www.loc.gov/standards/premis/ + - type: namespace + value: http://www.loc.gov/standards/premis + - type: schema + value: https://www.loc.gov/standards/premis/v3/premis-v3-0.xsd + - type: namespace + value: http://www.loc.gov/premis/v3 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-2.xsd + - type: namespace + value: info:lc/xmlns/premis-v2 + - type: schema + value: https://www.loc.gov/standards/premis/v2/premis-v2-3.xsd + - type: schema + value: https://www.loc.gov/standards/premis/v1/PREMIS-v1-1.xsd + - type: namespace + value: http://www.loc.gov/standards/premis/v1 + subject_areas: + - Multidisciplinary + title: PREMIS +info:ofi/fmt:kev:mtx:ctx: + acronym: CTX + field_of_science: + - sciences + id: openurl-contextobject + identifier: + - type: local + value: fuji:m7 + - type: local + value: https://fairsharing.org/4686 + - type: namespace + value: info:ofi/fmt:xml:xsd:ctx + - type: namespace + value: info:ofi/fmt:kev:mtx:ctx + - type: homepage + value: https://www.oclc.org/research/activities/registry.html + subject_areas: + - Multidisciplinary + title: The OpenURL ContextObject Format +info:ofi/fmt:xml:xsd:ctx: + acronym: CTX + field_of_science: + - sciences + id: openurl-contextobject + identifier: + - type: local + value: fuji:m7 + - type: local + value: https://fairsharing.org/4686 + - type: namespace + value: info:ofi/fmt:xml:xsd:ctx + - type: namespace + value: info:ofi/fmt:kev:mtx:ctx + - type: homepage + value: https://www.oclc.org/research/activities/registry.html + subject_areas: + - Multidisciplinary + title: The OpenURL ContextObject Format +info:srw/schema/5/picaXML-v1.0: + acronym: pica + field_of_science: [] + id: pica-metadata-schema + identifier: + - type: local + value: fuji:m37 + - type: local + value: https://fairsharing.org/4688 + - type: namespace + value: info:srw/schema/5/picaXML-v1.0 + - type: namespace + value: http://www.oclcpica.org/xmlns/ppxml-1.0 + - type: schema + value: http://www.oclcpica.org/xml/picaplus.xsd + - type: homepage + value: http://www.oclcpica.org + subject_areas: + title: OCLC PICA XML +isaconfig-diXa: + acronym: + field_of_science: + - medical and health sciences + - genetics + - natural sciences + - toxicology + id: isaconfig-dixa + identifier: + - type: local + value: msc:m68 + - type: homepage + value: https://bitbucket.org/kanterae/isaconfig-dixa + subject_areas: + - Genetics + - Toxicology + urls: + - https://bitbucket.org/kanterae/isaconfig-dixa +museumdat: + acronym: museumdat + field_of_science: + - humanities + id: museumdat-schema + identifier: + - type: local + value: fuji:m31 + - type: local + value: https://fairsharing.org/4671 + - type: schema + value: http://museum.zib.de/museumdat/museumdat-v1.0.xsd + - type: homepage + value: http://museum.zib.de/museumdat/ + subject_areas: + - Humanities + - Cultural heritage + urls: + - http://museum.zib.de/museumdat/museumdat-v1.0.xsd + - http://museum.zib.de/museumdat/ +'null': + acronym: scholix + field_of_science: [] + id: scholix-metadata-schema + identifier: + - type: local + value: fuji:m28 + - type: local + value: https://doi.org/10.25504/FAIRsharing.B0d5Kn + - type: homepage + value: http://www.scholix.org/schema + - type: namespace + value: http://www.scholix.org + - type: schema + value: https://github.com/scholix/schema/blob/master/xsd/v3/schema.xsd + - type: schema + value: https://github.com/scholix/schema/blob/master/xsd/v1/scholix.xsd + subject_areas: + urls: + - http://www.scholix.org/schema + - http://www.scholix.org + - https://github.com/scholix/schema/blob/master/xsd/v3/schema.xsd + - https://github.com/scholix/schema/blob/master/xsd/v1/scholix.xsd +oai_openaire: + acronym: OpenAIRE_G + field_of_science: + - sciences + id: openaire-guidelines + identifier: + - type: local + value: msc:m92 + - type: local + value: https://doi.org/10.25504/FAIRsharing.123197 + - type: homepage + value: https://guidelines.openaire.eu/ + - type: schema + value: https://www.openaire.eu/schema/repo-lit/4.0/openaire.xsd + - type: namespace + value: http://namespace.openaire.eu/schema/oaire/ + - type: namespace + value: oai_openaire + - type: namespace + value: https://openaire.eu + subject_areas: + - Multidisciplinary + title: OpenAIRE Guidelines +urn:dc:qdc:container: + acronym: QDC + field_of_science: + - sciences + id: dublin-core-qualified + identifier: + - type: local + value: fuji:m22 + - type: local + value: https://doi.org/10.25504/FAIRsharing.3nx7t + - type: homepage + value: https://www.dublincore.org/specifications/dublin-core/dcmes-qualifiers/ + - type: namespace + value: urn:dc:qdc:container + - type: namespace + value: figshare:oai:qdc + - type: namespace + value: http://naca.central.cranfield.ac.uk/ethos-oai/2.0/ + - type: namespace + value: http://ora.ox.ac.uk/oai-pmh/metadata-formats/solo_dc + - type: schema + value: https://cocoon.huma-num.fr/schemas/dcq.xsd + - type: namespace + value: http://crdo.risc.cnrs.fr/schemas/dcq/ + - type: namespace + value: http://oai.base-search.net/base_dc/ + - type: namespace + value: http://oai.base-search.net/base_dc + - type: schema + value: http://oai.base-search.net/base_dc/base_dc.xsd + subject_areas: + - Multidisciplinary + title: Qualified Dublin Core +urn:isbn:1-931666-22-9: + acronym: ead + field_of_science: + - humanities + - history + id: ead-encoded-archival-description + identifier: + - type: local + value: msc:m96 + - type: local + value: https://doi.org/10.25504/FAIRsharing.95f59a + - type: homepage + value: https://www.loc.gov/ead/ + - type: namespace + value: urn:isbn:1-931666-22-9 + - type: namespace + value: http://ead3.archivists.org/schema + - type: namespace + value: http://ead3.archivists.org/schema/ + subject_areas: + - History + title: EAD (Encoded Archival Description) +urn:mpeg:mpeg21:2002:02-DIDL-NS: + acronym: DIDL + field_of_science: + - sciences + id: didl-digital-item-declaration-language + identifier: + - type: local + value: fuji:m4 + - type: local + value: https://fairsharing.org/4652 + - type: namespace + value: urn:mpeg:mpeg21:2002:02-DIDL-NS + - type: homepage + value: https://www.iso.org/standard/35366.html + subject_areas: + - Multidisciplinary + title: Digital Item Declaration Language (DIDL) +urn:nbn:de:1111-2004033116: + acronym: epicur + field_of_science: [] + id: epicur-metadata-schema + identifier: + - type: local + value: fuji:m21 + - type: local + value: https://fairsharing.org/4659 + - type: namespace + value: urn:nbn:de:1111-2004033116 + - type: schema + value: https://files.dnb.de/Web/xepicur.xsd + - type: homepage + value: https://wiki.dnb.de/display/URNSERVDOK/xepicur+-+XML-Datentransferformat+zur+Verwaltung+von+URN + subject_areas: + title: xepicur +urn:xmlns:org:eurocris:cerif-1.4-0: + acronym: CERIF + field_of_science: + - sciences + id: cerif + identifier: + - type: local + value: msc:m4 + - type: local + value: https://doi.org/10.25504/FAIRsharing.6945dq + - type: homepage + value: http://www.eurocris.org/cerif/main-features-cerif + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.6/CERIF_1.6_2.xsd + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.5/CERIF_1.5_1.xsd + - type: schema + value: https://www.openaire.eu/schema/cris/1.1/openaire-cerif-profile.xsd + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.6-2 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.5-1 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.4-0 + - type: namespace + value: http://www.eurocris.org/ontologies/cerif/1.3# + - type: namespace + value: https://www.openaire.eu/cerif-profile/1.1/ + subject_areas: + - Multidisciplinary + title: CERIF (Common European Research Information Format) +urn:xmlns:org:eurocris:cerif-1.5-1: + acronym: CERIF + field_of_science: + - sciences + id: cerif + identifier: + - type: local + value: msc:m4 + - type: local + value: https://doi.org/10.25504/FAIRsharing.6945dq + - type: homepage + value: http://www.eurocris.org/cerif/main-features-cerif + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.6/CERIF_1.6_2.xsd + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.5/CERIF_1.5_1.xsd + - type: schema + value: https://www.openaire.eu/schema/cris/1.1/openaire-cerif-profile.xsd + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.6-2 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.5-1 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.4-0 + - type: namespace + value: http://www.eurocris.org/ontologies/cerif/1.3# + - type: namespace + value: https://www.openaire.eu/cerif-profile/1.1/ + subject_areas: + - Multidisciplinary + title: CERIF (Common European Research Information Format) +urn:xmlns:org:eurocris:cerif-1.6-2: + acronym: CERIF + field_of_science: + - sciences + id: cerif + identifier: + - type: local + value: msc:m4 + - type: local + value: https://doi.org/10.25504/FAIRsharing.6945dq + - type: homepage + value: http://www.eurocris.org/cerif/main-features-cerif + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.6/CERIF_1.6_2.xsd + - type: schema + value: https://www.eurocris.org/Uploads/Web%20pages/CERIF-1.5/CERIF_1.5_1.xsd + - type: schema + value: https://www.openaire.eu/schema/cris/1.1/openaire-cerif-profile.xsd + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.6-2 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.5-1 + - type: namespace + value: urn:xmlns:org:eurocris:cerif-1.4-0 + - type: namespace + value: http://www.eurocris.org/ontologies/cerif/1.3# + - type: namespace + value: https://www.openaire.eu/cerif-profile/1.1/ + subject_areas: + - Multidisciplinary + title: CERIF (Common European Research Information Format) +www.iso.org/iso/iso_catalogue/catalogue_tc/catalogue_detail.htm?csnumber=32554: + acronym: + field_of_science: + - earth and related environmental sciences + - cartography + - oceanography + - glaciology + - meteorology + - climatology + - geology + - hydrology + - physical geography + - hydrogeology + - natural sciences + id: iso-19136 + identifier: + - type: local + value: fuji:m3 + - type: local + value: https://doi.org/10.25504/FAIRsharing.d69ee0 + - type: homepage + value: www.iso.org/iso/iso_catalogue/catalogue_tc/catalogue_detail.htm?csnumber=32554 + - type: namespace + value: http://www.opengis.net/gml/3.2 + - type: namespace + value: http://schemas.opengis.net/gml/3.2.1/gml.xsd + subject_areas: + - Cartography + - Climatology + - Earth sciences + - Geography + - Geology + - Glaciology + - Hydrogeology + - Hydrology + - Meteorology + - Oceanography + - Topography + title: Geography Markup Language +www.lido-schema.org/schema/latest/lido.xsd: + acronym: LIDO + field_of_science: + - humanities + id: lido-lightweight-information-describing-objects + identifier: + - type: local + value: fuji:m18 + - type: local + value: https://doi.org/10.25504/FAIRsharing.73558b + - type: schema + value: www.lido-schema.org/schema/latest/lido.xsd + - type: schema + value: www.lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: schema + value: http://www.lido-schema.org/schema/v1.0/lido-v1.0.xsd + - type: schema + value: http://lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: namespace + value: http://www.lido-schema.org + - type: homepage + value: http://www.lido-schema.org + subject_areas: + - Humanities + - Cultural heritage + title: LIDO, Lightweight Information Describing Objects +www.lido-schema.org/schema/v1.1/lido-v1.1.xsd: + acronym: LIDO + field_of_science: + - humanities + id: lido-lightweight-information-describing-objects + identifier: + - type: local + value: fuji:m18 + - type: local + value: https://doi.org/10.25504/FAIRsharing.73558b + - type: schema + value: www.lido-schema.org/schema/latest/lido.xsd + - type: schema + value: www.lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: schema + value: http://www.lido-schema.org/schema/v1.0/lido-v1.0.xsd + - type: schema + value: http://lido-schema.org/schema/v1.1/lido-v1.1.xsd + - type: namespace + value: http://www.lido-schema.org + - type: homepage + value: http://www.lido-schema.org + subject_areas: + - Humanities + - Cultural heritage + title: LIDO, Lightweight Information Describing Objects +xepicur: + acronym: epicur + field_of_science: [] + id: epicur-metadata-schema + identifier: + - type: local + value: fuji:m21 + - type: local + value: https://fairsharing.org/4659 + - type: namespace + value: urn:nbn:de:1111-2004033116 + - type: schema + value: https://files.dnb.de/Web/xepicur.xsd + - type: homepage + value: https://wiki.dnb.de/display/URNSERVDOK/xepicur+-+XML-Datentransferformat+zur+Verwaltung+von+URN + subject_areas: + urls: + - urn:nbn:de:1111-2004033116 + - ' https://files.dnb.de/Web/xepicur.xsd' + - https://wiki.dnb.de/display/URNSERVDOK/xepicur+-+XML-Datentransferformat+zur+Verwaltung+von+URN diff --git a/fuji_server/data/open_formats.json b/fuji_server/data/open_formats.json deleted file mode 100644 index 68c8f486..00000000 --- a/fuji_server/data/open_formats.json +++ /dev/null @@ -1,78 +0,0 @@ -{ - "application/CCP4-mtz-freerflag": "Generic", - "application/CCP4-mtz-map": "Generic", - "application/CCP4-mtz-observed": "Generic", - "application/CCP4-mtz-phases": "Generic", - "application/CCP4-unmerged-experimental": "Generic", - "application/dbase": "Generic", - "application/dbf": "Generic", - "application/dicom": "Generic", - "application/fits": "Generic", - "application/geo+json": "Generic", - "application/mathml+xml": "Generic", - "application/netcdf": "Generic", - "application/sbml+xml": "Generic", - "application/sla": "Generic", - "application/vnd.wolfram.cdf": "Generic", - "application/vnd.wolfram.cdf.text": "Generic", - "application/wmo-grib2": "Generic", - "application/x-3ds": "Generic", - "application/x-cdf": "Generic", - "application/x-grib": "Generic", - "application/x-hdf": "Generic", - "application/x-hdf5": "Generic", - "application/x-netcdf": "Generic", - "chemical/seq-aa-fasta": "Generic", - "chemical/seq-na-fasta": "Generic", - "chemical/seq-na-fastq": "Generic", - "chemical/seq-na-genbank": "Generic", - "chemical/seq-na-sff": "Generic", - "chemical/x-cactus": "Generic", - "chemical/x-cactus-ascii": "Generic", - "chemical/x-cdx": "Generic", - "chemical/x-cdxml": "Generic", - "chemical/x-cerius": "Generic", - "chemical/x-chem3d": "Generic", - "chemical/x-cif": "Generic", - "chemical/x-cmdf": "Generic", - "chemical/x-cml": "Generic", - "chemical/x-crossfire": "Generic", - "chemical/x-cube": "Generic", - "chemical/x-daylight-smiles": "Generic", - "chemical/x-embl-dl-nucleotide": "Generic", - "chemical/x-galactic-spc": "Generic", - "chemical/x-gamess-input": "Generic", - "chemical/x-gaussian-checkpoint": "Generic", - "chemical/x-gaussian-log": "Generic", - "chemical/x-gcg8-sequence": "Generic", - "chemical/x-hin": "Generic", - "chemical/x-isostar": "Generic", - "chemical/x-jcamp-dx": "Generic", - "chemical/x-kinemage": "Generic", - "chemical/x-macmolecule": "Generic", - "chemical/x-macromodel-input": "Generic", - "chemical/x-mdl-molfile": "Generic", - "chemical/x-mdl-rdfile": "Generic", - "chemical/x-mdl-rxnfile": "Generic", - "chemical/x-mdl-sdfile": "Generic", - "chemical/x-mdl-tgf": "Generic", - "chemical/x-mmcif": "Generic", - "chemical/x-mol2": "Generic", - "chemical/x-molconn-Z": "Generic", - "chemical/x-pdb": "Generic", - "chemical/x-swissprot": "Generic", - "chemical/x-vamas-iso14976": "Generic", - "chemical/x-xtel": "Generic", - "hemical/x-alchemy": "Generic", - "image/dicom-rle": "Generic", - "image/fits": "Generic", - "image/x-3ds": "Generic", - "model/mesh": "Generic", - "model/vnd.collada+xml": "Generic", - "text/mathml": "Generic", - "text/x-bed": "Generic", - "text/x-fasta": "Generic", - "text/x-gff3": "Generic", - "text/x-nh": "Generic", - "text/x-stockholm-alignment": "Generic" -} diff --git a/fuji_server/data/open_formats.yaml b/fuji_server/data/open_formats.yaml new file mode 100644 index 00000000..d5715474 --- /dev/null +++ b/fuji_server/data/open_formats.yaml @@ -0,0 +1,76 @@ +application/CCP4-mtz-freerflag: Generic +application/CCP4-mtz-map: Generic +application/CCP4-mtz-observed: Generic +application/CCP4-mtz-phases: Generic +application/CCP4-unmerged-experimental: Generic +application/dbase: Generic +application/dbf: Generic +application/dicom: Generic +application/fits: Generic +application/geo+json: Generic +application/mathml+xml: Generic +application/netcdf: Generic +application/sbml+xml: Generic +application/sla: Generic +application/vnd.wolfram.cdf: Generic +application/vnd.wolfram.cdf.text: Generic +application/wmo-grib2: Generic +application/x-3ds: Generic +application/x-cdf: Generic +application/x-grib: Generic +application/x-hdf: Generic +application/x-hdf5: Generic +application/x-netcdf: Generic +chemical/seq-aa-fasta: Generic +chemical/seq-na-fasta: Generic +chemical/seq-na-fastq: Generic +chemical/seq-na-genbank: Generic +chemical/seq-na-sff: Generic +chemical/x-cactus: Generic +chemical/x-cactus-ascii: Generic +chemical/x-cdx: Generic +chemical/x-cdxml: Generic +chemical/x-cerius: Generic +chemical/x-chem3d: Generic +chemical/x-cif: Generic +chemical/x-cmdf: Generic +chemical/x-cml: Generic +chemical/x-crossfire: Generic +chemical/x-cube: Generic +chemical/x-daylight-smiles: Generic +chemical/x-embl-dl-nucleotide: Generic +chemical/x-galactic-spc: Generic +chemical/x-gamess-input: Generic +chemical/x-gaussian-checkpoint: Generic +chemical/x-gaussian-log: Generic +chemical/x-gcg8-sequence: Generic +chemical/x-hin: Generic +chemical/x-isostar: Generic +chemical/x-jcamp-dx: Generic +chemical/x-kinemage: Generic +chemical/x-macmolecule: Generic +chemical/x-macromodel-input: Generic +chemical/x-mdl-molfile: Generic +chemical/x-mdl-rdfile: Generic +chemical/x-mdl-rxnfile: Generic +chemical/x-mdl-sdfile: Generic +chemical/x-mdl-tgf: Generic +chemical/x-mmcif: Generic +chemical/x-mol2: Generic +chemical/x-molconn-Z: Generic +chemical/x-pdb: Generic +chemical/x-swissprot: Generic +chemical/x-vamas-iso14976: Generic +chemical/x-xtel: Generic +hemical/x-alchemy: Generic +image/dicom-rle: Generic +image/fits: Generic +image/x-3ds: Generic +model/mesh: Generic +model/vnd.collada+xml: Generic +text/mathml: Generic +text/x-bed: Generic +text/x-fasta: Generic +text/x-gff3: Generic +text/x-nh: Generic +text/x-stockholm-alignment: Generic diff --git a/fuji_server/data/repodois.yaml b/fuji_server/data/repodois.yaml index 594c844d..db9707e2 100644 --- a/fuji_server/data/repodois.yaml +++ b/fuji_server/data/repodois.yaml @@ -33,7 +33,7 @@ bl.lincoln: https://doi.org/10.17616/R3MZ01 bl.lshtm: https://doi.org/10.17616/R3705V bl.mendeley: https://doi.org/10.17616/R3DD11 bl.nhm: https://doi.org/10.17616/R3PS7K -bl.oxdb: https://doi.org/10.17616/R3504V +bl.oxdb: https://doi.org/10.17616/R3Q056 bl.reading: https://doi.org/10.17616/R3D075 bl.salford: https://doi.org/10.17616/R31D20 bl.shef: https://doi.org/10.17616/R3P64K @@ -45,6 +45,7 @@ bl.uclan: https://doi.org/10.17616/R38D3J bl.ucld: https://doi.org/10.17616/R34F41 bl.uel: https://doi.org/10.17616/R3V48Z bl.ukda: https://doi.org/10.17616/R3088K +bmbf.hirzqt: https://doi.org/10.17616/R3CK9G brown.bdr: https://doi.org/10.17616/R3193B brvz.rdr: https://doi.org/10.17616/R31NJN5S caltech.data: https://doi.org/10.17616/R3SW99 @@ -55,6 +56,7 @@ cern.hepdata: https://doi.org/10.17616/R30W2H cern.inspire: https://doi.org/10.17616/R3JC9Z cern.zenodo: https://doi.org/10.17616/R3QP53 clarin.clarin: https://doi.org/10.17616/R3RP5D +cngb.cga: https://doi.org/10.17616/R31NJMGL cngb.gigadb: https://doi.org/10.17616/R3TG83 cnic.sciencedb: https://doi.org/10.17616/R31NJMNT concor.kcydcu: https://doi.org/10.17616/R3FJ70 @@ -110,6 +112,7 @@ fzj.b2share: https://doi.org/10.17616/R3VK72 fzj.tereno: https://doi.org/10.17616/R39G9T gbif.ec: https://doi.org/10.17616/R31NJNFS gbif.gbif: https://doi.org/10.17616/R3J014 +gdcc.consorcio: https://doi.org/10.17616/R3S668 gdcc.csuc: https://doi.org/10.17616/R31NJMYF gdcc.harvard-dv: https://doi.org/10.17616/R3C880 gdcc.harvard-sbgr: https://doi.org/10.17616/R3N92J @@ -152,7 +155,7 @@ inist.otelo: https://doi.org/10.17616/R3F19K inist.resif: https://doi.org/10.17616/R37Q06 iris.iris: https://doi.org/10.17616/R3X607 ist.rex: https://doi.org/10.17616/R3877B -ivuw.dadosipb: https://doi.org/10.17616/R31NJN3K +itesm.ojevlu: https://doi.org/10.17616/R31NJNF0 ivuw.ipbdados: https://doi.org/10.17616/R31NJN3K jbru.bbees: https://doi.org/10.17616/R31NJNEN jcvi.eivbwb: https://doi.org/10.17616/R30P93 diff --git a/fuji_server/data/standard_uri_protocols.json b/fuji_server/data/standard_uri_protocols.json deleted file mode 100644 index 3637fbfa..00000000 --- a/fuji_server/data/standard_uri_protocols.json +++ /dev/null @@ -1,50 +0,0 @@ -{ - "amqp": { - "name": "Advanced Message Queuing Protocol" - }, - "coap": { - "name": "Constrained Application Protocol" - }, - "coaps": { - "name": "Constrained Application Protocol Secure" - }, - "ftp": { - "name": "File Transfer Protocol" - }, - "http": { - "name": "Hyper Text Transfer Protocol" - }, - "https": { - "name": "Hyper Text Transfer Protocol Secure" - }, - "mqtt": { - "name": "Message Queuing Telemetry Transport" - }, - "rtsp": { - "name": "Real Time Streaming Protocol" - }, - "rtspu": { - "name": "Real Time Streaming Protocol" - }, - "sftp": { - "name": "Secure File Transfer Protocol" - }, - "shttp": { - "name": "Secure Hypertext Transfer Protocol" - }, - "ssh": { - "name": "Secure Shell" - }, - "svn": { - "name": "Subversion" - }, - "telnet": { - "name": "Telnet" - }, - "ws": { - "name": "WebSocket" - }, - "wss": { - "name": "WebSocket Secure" - } -} diff --git a/fuji_server/data/standard_uri_protocols.yaml b/fuji_server/data/standard_uri_protocols.yaml new file mode 100644 index 00000000..8779b93e --- /dev/null +++ b/fuji_server/data/standard_uri_protocols.yaml @@ -0,0 +1,32 @@ +amqp: + name: Advanced Message Queuing Protocol +coap: + name: Constrained Application Protocol +coaps: + name: Constrained Application Protocol Secure +ftp: + name: File Transfer Protocol +http: + name: Hyper Text Transfer Protocol +https: + name: Hyper Text Transfer Protocol Secure +mqtt: + name: Message Queuing Telemetry Transport +rtsp: + name: Real Time Streaming Protocol +rtspu: + name: Real Time Streaming Protocol +sftp: + name: Secure File Transfer Protocol +shttp: + name: Secure Hypertext Transfer Protocol +ssh: + name: Secure Shell +svn: + name: Subversion +telnet: + name: Telnet +ws: + name: WebSocket +wss: + name: WebSocket Secure