Silas Gifford Honors Thesis

Here is the code, images, and data on the populations of interest in Point Reyes National Seashore.

Basic Info

Using the full images pulled from Google Earth found under Images
Tile these images with Code/Tile_Harbor_Seals.ipynb and Code/Tile_Elephant_Seals.ipynb
Create your own annotations via https://www.robots.ox.ac.uk/~vgg/software/via/app/via_image_annotator.html or use mine found in Data/Harbor_Seal_Anno_csv.csv (a single csv file) and Data/Elephant_Seal_Anno_csv (a folder of csv files).
If you're using your own annotations, use this repo https://github.com/martinzlocha/anchor-optimization/ to get anchor configurations, or use mine at Data/habor_config.ini and Data/elephant_config.ini
Convert annotations into the right format for Retinanet using Code/Harbor_Seal_Annotations_Right_Format.ipynb and Code/Elephant_Seal_Annotations_Right_Format.ipynb
- Please note that this code will give you randomized training, validation, and testing sets. If you want to train/test on specific imagery, you must change the code.
Make sure you have Retinanet installed: https://github.com/fizyr/keras-retinanet
To train on all harbor seal tiles, use Code/Harbor_Seals_Run_Model_Full.ipynb
To train on harbor seal beach-only tiles, use Code/Harbor_Seals_Run_Model_Beach.ipynb
To train on elephant seal beach-only tiles, use Code/Elephant_Seals_Run_Model.ipynb
Use Code/harbor_seal_visual_check.ipynb and Code/harbor_seal_visual_check.ipynb to visualize model output or view model output in Data/model_output