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include: - remote: 'https://raw.githubusercontent.com/p2m2/service-rdf-database-deployment/latest/msd-deploy.yml' fetch_info_database: stage: version tags: [bash] only: - tags - main variables: D: https://api.github.com/repos/obophenotype/ncbitaxon/releases/latest script: - echo " ========================================================" - echo " =============== Manage NCBI Taxon =====" - echo " ========================================================" - echo "CATEGORY=taxon" >> build.env - echo "DATABASE=ncbi" >> build.env - RES=$(curl -s $D | jq -r '.assets[] | select(.name|test("ncbitaxon.owl$"))') - FILE=$(echo $RES | jq -r '.browser_download_url') - echo "RDF_INPUT_FILES=$FILE" >> build.env - VERSION=$(echo $RES | jq -r '.updated_at' | egrep -o '[[:digit:]]{4}-[[:digit:]]{2}-[[:digit:]]{2}' | uniq | tail -n1) - echo "VERSION=$VERSION" >> build.env artifacts: reports: dotenv: build.env
wget --spider -nv -r -nd --no-parent -e robots=off -A "$(basename https://github.com/obophenotype/ncbitaxon/releases/download/v2023-02-24/ncbitaxon.owl)" $(dirname https://github.com/obophenotype/ncbitaxon/releases/download/v2023-02-24/ncbitaxon.owl)/ 2>&1 https://github.com/obophenotype/ncbitaxon/releases/download/v2023-02-24/: Remote file does not exist -- broken link!!! Found 1 broken link. https://github.com/obophenotype/ncbitaxon/releases/download/v2023-02-24/
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YAML / Gitlab CI For NCBI Taxon
Test of out.sh in command line
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