diff --git a/src/Command/CheckSystemCommand.php b/src/Command/CheckSystemCommand.php
index 1cf89d6e..0eb3afc7 100644
--- a/src/Command/CheckSystemCommand.php
+++ b/src/Command/CheckSystemCommand.php
@@ -44,8 +44,8 @@ protected function execute(InputInterface $input, OutputInterface $output){
 		/** @var  \Owncloud\Updater\Utils\AppManager  $occRunner */
 		$appManager = $this->container['utils.appmanager'];
 		$registry->set(
-			'shippedApps',
-			$appManager->getShippedApps()
+			'notShippedApps',
+			$appManager->getNotShippedApps()
 		);
 		$occRunner = $this->container['utils.occrunner'];
 
diff --git a/src/Command/EnableNotShippedAppsCommand.php b/src/Command/EnableNotShippedAppsCommand.php
index 4e05adc3..fca61b0c 100644
--- a/src/Command/EnableNotShippedAppsCommand.php
+++ b/src/Command/EnableNotShippedAppsCommand.php
@@ -36,11 +36,31 @@ protected function configure(){
 	}
 
 	protected function execute(InputInterface $input, OutputInterface $output){
+		/** @var \Owncloud\Updater\Utils\Locator $locator */
+		$locator = $this->container['utils.locator'];
+		/** @var \Owncloud\Updater\Utils\Checkpoint $checkpoint */
+		$checkpoint = $this->container['utils.checkpoint'];
+		/** @var \Owncloud\Updater\Utils\FilesystemHelper $fsHelper */
+		$fsHelper = $this->container['utils.filesystemhelper'];
+
 		$registry = $this->container['utils.registry'];
+
+		$notShippedApps = $registry->get('notShippedApps');
+		$notShippedApps = is_array($notShippedApps) ? $notShippedApps : [];
+
+		$lastCheckpointId = $checkpoint->getLastCheckpointId();
+		$lastCheckpointPath = $checkpoint->getCheckpointPath($lastCheckpointId);
+		if ($lastCheckpointId){
+			$oldSourcesDir = $locator->getOwnCloudRootPath();
+			foreach ($notShippedApps as $notShippedApp) {
+				$fsHelper->copyr($lastCheckpointPath . '/apps/' . $notShippedApp, $oldSourcesDir . '/apps/' . $notShippedApp, false);
+			}
+		}
+
+		/** @var \Owncloud\Updater\Utils\AppManager $appManager */
 		$appManager = $registry->get('appManager');
 		if (!is_null($appManager)){
 			$appManager->reenableNotShippedApps($output);
 		}
 	}
-
 }
diff --git a/src/Utils/AppManager.php b/src/Utils/AppManager.php
index 421f0b04..5168f5e9 100644
--- a/src/Utils/AppManager.php
+++ b/src/Utils/AppManager.php
@@ -100,6 +100,12 @@ public function getAllApps(){
 		return $allApps;
 	}
 
+	public function getNotShippedApps(){
+		$shippedApps = $this->occRunner->runJson('app:list --shipped false');
+		$allApps = array_merge(array_keys($shippedApps['enabled']), array_keys($shippedApps['disabled']));
+		return $allApps;
+	}
+
 	public function getShippedApps(){
 		$shippedApps = $this->occRunner->runJson('app:list --shipped true');
 		$allApps = array_merge(array_keys($shippedApps['enabled']), array_keys($shippedApps['disabled']));