From 5a75b1c7eea6172215b7138635ffe97002955fdd Mon Sep 17 00:00:00 2001 From: Shujun Ou Date: Fri, 28 Feb 2020 16:40:13 -0600 Subject: [PATCH] update installations and usages #64 --- EDTA.pl | 2 +- README.md | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/EDTA.pl b/EDTA.pl index d52ca97..49eb026 100755 --- a/EDTA.pl +++ b/EDTA.pl @@ -6,7 +6,7 @@ use Getopt::Long; use Pod::Usage; -my $version = "v1.8.1"; +my $version = "v1.8.2"; #v1.0 05/31/2019 #v1.1 06/05/2019 #v1.2 06/16/2019 diff --git a/README.md b/README.md index 4bb6616..1ce38e8 100644 --- a/README.md +++ b/README.md @@ -38,7 +38,7 @@ For benchmarking of a testing TE library, I have provided the curated TE annotat There are four ways to install EDTA. Please choose one. ### Quick installation using conda (Linux64) - conda install -c bioconda -c anaconda -c conda-forge edta + conda install -c bioconda -c conda-forge edta ### Quick installation using [Singularity](https://sylabs.io/docs/) (good for HPC users) Installation: @@ -58,7 +58,7 @@ Installation: Usage: - docker run kapeel/edta --genome genome.fa [other parameters] + docker run -v $PWD:/in -w /in kapeel/edta --genome genome.fa [other parameters] ### Step by step installation using conda conda create -n EDTA @@ -122,7 +122,7 @@ Optional: ### Divide and conquer *Identify intact elements of a paticular TE type*: -1.Get raw libraries from a genome (specify `-type ltr|tir|helitron` in different runs) +1.Get raw TEs from a genome (specify `-type ltr|tir|helitron` in different runs) perl EDTA_raw.pl [options] --genome [File] The genome FASTA