diff --git a/docs/pages/4_assembly_qc.md b/docs/pages/4_assembly_qc.md index acfe46e..af67c0b 100644 --- a/docs/pages/4_assembly_qc.md +++ b/docs/pages/4_assembly_qc.md @@ -256,14 +256,13 @@ Let's try this out on the _E. coli_ Verkko assembly. First we need a Meryl datab cd ~/obss_2023/genome_assembly cd assembly_qc/merqury ``` - If you use 'ls', youll be able to see the assembly and the reads. - + Let's grab the Verkko assembly we created earlier. ``` + .... + Now we can run Mercury! ``` - module purge - module load Merqury - sbatch --account nesi02659 --job-name=meryl --time=00:15:00 --cpus-per-task 8 --mem=24G -p milan --wrap="meryl count k=30 memory=24 threads=8 hifi.fastq.gz output read-db.meryl" + meryl count k=30 memory=4 threads=2 hifi.fastq.gz output read-db.meryl ``` ??? note "`--wrap` ???"