sysbiolux

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36 repositories

GliomaGEM
Public
Glioma metabolic modelling for repurposing of single and combination drugs
paper metabolic-networks
R
•0•0•0•0•Updated Nov 30, 2024Nov 30, 2024
MidbrainOrganoid_Miro1_scMetabMod
Public
Multi-cell population modelling predicts metabolic activity of midbrain organoids
MATLAB
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 27, 2024Nov 27, 2024
Helgueta_et_al_2023
Public
Companion repo for the article by Sergio Helgueta et al.
paper
GNU General Public License v3.0
•0•1•0•0•Updated Nov 5, 2024Nov 5, 2024
FALCON
Public
FALCON: A Toolbox for the Fast Contextualization of Logical Networks
paper signaling-networks
MATLAB
•
GNU General Public License v3.0
•5•4•0•0•Updated Nov 4, 2024Nov 4, 2024
DeepOncoAI
Public
ML cancer drug sensitivity
machine-learning
Python
•0•1•0•0•Updated Nov 4, 2024Nov 4, 2024
Clinical_Biomarker_Detection
Public
DRIVEN-DTU WP13: Biomarker Detection In Clinical Cohort Data Using Machine Learning
machine-learning paper
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Oct 18, 2024Oct 18, 2024
IHEC_metabolism
Public
0•0•0•0•Updated Jul 26, 2024Jul 26, 2024
ISB705MetabolicNetworkModeling
Public
teaching metabolic-networks
HTML
•0•1•0•0•Updated Jul 19, 2024Jul 19, 2024
rFASTCORMICS
Public
paper metabolic-networks
MATLAB
•
GNU Lesser General Public License v3.0
•0•5•1•0•Updated Jul 17, 2024Jul 17, 2024
scFASTCORMICS
Public
paper metabolic-networks
MATLAB
•0•0•0•0•Updated Jul 10, 2024Jul 10, 2024
cobratoolbox_rFASTCORMICS
Public
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
MATLAB
•
Other
•317•0•0•0•Updated Jun 29, 2024Jun 29, 2024
AKR1A1-Deficiency
Public
metabolic-networks
MATLAB
•0•0•0•0•Updated Apr 30, 2024Apr 30, 2024
MedicagoScripts
Public
MATLAB
•1•1•0•0•Updated Apr 2, 2024Apr 2, 2024
IDARE
Public
IDARE - Multiomics Visualisation in Cytoscape
paper cytoscape metabolic-networks
Java
•
GNU Lesser General Public License v3.0
•1•2•0•2•Updated Dec 5, 2023Dec 5, 2023
cobratoolboxrFASTCORMICS
Public
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
MATLAB
•
Other
•317•0•0•0•Updated Nov 30, 2023Nov 30, 2023
NutriHuMiX
Public
paper metabolic-networks
0•0•0•0•Updated Nov 7, 2023Nov 7, 2023
MelanomaPaper
Public
Consensus models of Bintener et al. 2023
paper metabolic-networks
0•0•0•0•Updated Jul 21, 2023Jul 21, 2023
cobratoolbox
Public
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
MATLAB
•
Other
•317•0•0•0•Updated Jul 7, 2023Jul 7, 2023
GomezRamos_et_al_2023
Public
paper
Python
•0•0•0•0•Updated Nov 2, 2022Nov 2, 2022
IDARE-QuickStart
Public
metabolic-networks
0•1•0•0•Updated Jun 27, 2022Jun 27, 2022
GBM_survival
Public
Python
•0•0•0•0•Updated Jun 10, 2022Jun 10, 2022
Biomass_formulation
Public
paper metabolic-networks
MATLAB
•3•1•0•0•Updated Feb 21, 2022Feb 21, 2022
Herbal_drug_prediction
Public
A workflow for ranking herbal drugs using metabolic modeling and flux variability anaylsis.
paper metabolic-networks
R
•
MIT License
•1•1•0•0•Updated Feb 21, 2022Feb 21, 2022
DCcov
Public
Drug repositioning of single and drug combinations using Flux Balance Analysis.
paper metabolic-networks
Jupyter Notebook
•4•5•0•0•Updated Nov 25, 2021Nov 25, 2021
algorecell
Public
AlgoReCell project
MATLAB
•0•1•0•0•Updated Oct 15, 2021Oct 15, 2021
Gui-et-al
Public
paper
0•0•1•0•Updated Sep 5, 2021Sep 5, 2021
Multi-tissue-model
Public
paper metabolic-networks
GNU General Public License v3.0
•1•1•0•0•Updated Jul 15, 2021Jul 15, 2021
TRAIL_IZI_Melanoma
Public
melanoma
R
•
MIT License
•0•0•0•0•Updated Jun 29, 2021Jun 29, 2021
IDAREBarChartsPlugin
Public
A Plugin for IDARE which provides Bar Chart visualisations
Java
•
GNU General Public License v3.0
•0•0•0•0•Updated Mar 24, 2021Mar 24, 2021
IDAREGEOSoftReader
Public
A plugin for IDARE that proivdes a reader for GEO .soft files.
Java
•
GNU General Public License v3.0
•0•0•0•0•Updated Mar 24, 2021Mar 24, 2021