Reproducible Healthcare Simulations in Python and R

All

31 repositories

stars_wp1_summary
Public
Summary of the eight computational reproducibility assessments conducted as part of STARS Work Package 1. These assessed discrete-event simulation papers with models in Python and R.
TeX
•
Creative Commons Attribution 4.0 International
•0•1•0•0•Updated Nov 28, 2024Nov 28, 2024
stars-treat-simmer-quarto-wasm
Public
WASM deployed implementation of https://github.com/pythonhealthdatascience/stars-treat-simmer using Quarto Live
Lua
•
MIT License
•0•0•0•0•Updated Nov 27, 2024Nov 27, 2024
stars-eom-rcc
Public
Modifications to the "Exeter Oncology Model: Renal Cell Carcinoma edition (EOM-RCC)" as part of STARS work package 3.
r reproducible-research open-science reproducible-science nice reproducibility oncology cost-effectiveness partitioned-survival-model health-technology-assessment
R
•
MIT License
•2•3•0•0•Updated Nov 25, 2024Nov 25, 2024
stars-reproduce-wood-2021
Public
Assessing the computational reproducibility of Wood et al. 2021 as part of STARS.
r simulation reproducible-research open-science reproducibility nhs intensive-care triage discrete-event-simulation covid-19
TeX
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 21, 2024Nov 21, 2024
stars-reproduce-hernandez-2015
Public
Assessing the computational reproducibility of Hernandez et al. 2015 as part of STARS.
python r simulation reproducible-research open-science reproducible-science discrete-event-simulation quarto
TeX
•
MIT License
•0•0•0•0•Updated Nov 21, 2024Nov 21, 2024
stars-reproduce-johnson-2021
Public
Assessing the computational reproducibility of Johnson et al. 2021 as part of STARS.
r simulation reproducible-research open-science reproducibility discrete-event-simulation quarto copd
R
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 21, 2024Nov 21, 2024
stars-reproduce-anagnostou-2022
Public
Assessing the computational reproducibility of Anagnostou et al. 2022 as part of STARS.
python simulation reproducible-research icu open-science reproducibility nhs intensive-care simpy discrete-event-simulation
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Nov 21, 2024Nov 21, 2024
stars-reproduce-kim-2021
Public
Assessing the computational reproducibility of Kim et al. 2021 as part of STARS.
r simulation reproducible-research open-science screening reproducibility nhs discrete-event-simulation quarto aneurysm
R
•
GNU Lesser General Public License v3.0
•0•2•0•0•Updated Nov 21, 2024Nov 21, 2024
stars-reproduce-lim-2020
Public
Assessing the computational reproducibility of Lim et al. 2020 as part of STARS.
python simulation reproducible-research numpy pandas open-science reproducibility discrete-event-simulation quarto covid-19
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Nov 21, 2024Nov 21, 2024
stars-reproduce-shoaib-2022
Public
Assessing the computational reproducibility of Shoaib and Ramamohan 2022 as part of STARS.
python simulation reproducible-research open-science india reproducibility discrete-event-simulation quarto salabim
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Nov 21, 2024Nov 21, 2024
stars-reproduce-huang-2019
Public
Assessing the computational reproducibility of Huang et al. 2019 as part of STARS.
r simulation reproducible-research open-science reproducibility discrete-event-simulation quarto simmer
TeX
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 21, 2024Nov 21, 2024
stars-shiny-simmer
Public
WORK IN PROGRESS: An example R shiny interface to a simmer DES model.
JavaScript
•
MIT License
•0•3•0•0•Updated Nov 19, 2024Nov 19, 2024
stress_update
Public
A review and update of the Strengthening the Reporting of Empirical Simulation Studies guidelines for DES, SD, and ABS.
Jupyter Notebook
•
MIT License
•0•1•0•0•Updated Nov 1, 2024Nov 1, 2024
stars-ciw-example
Public
A treatment simulation model implemented in CiW
open-science healthcare reproducibility discrete-event-simulation model-reuse ciw shiny-python
Python
•
GNU General Public License v3.0
•2•1•0•0•Updated Oct 23, 2024Oct 23, 2024
intro-open-sim
Public
An introduction to building open Descrete-Event Simulation (DES) in Python
Jupyter Notebook
•
MIT License
•0•2•0•0•Updated Oct 22, 2024Oct 22, 2024
stars_wp3_summary
Public
Reflections from prospective and retrospective application of the STARS framework
TeX
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Oct 22, 2024Oct 22, 2024
stars-streamlit-example
Public
STARS Project: deploying a python DES model using streamlit
reproducible-research open-science healthcare simpy discrete-event-simulation streamlit model-reuse
Python
•
MIT License
•3•0•1•0•Updated Oct 15, 2024Oct 15, 2024
stars-stlite-example
Public
STARS Project: deploying a python DES model using stlite
Python
•
MIT License
•3•1•0•0•Updated Oct 14, 2024Oct 14, 2024
.github
Public
GitHub profile
MIT License
•0•0•0•0•Updated Oct 10, 2024Oct 10, 2024
introductory_foss_sim_tutorial_paper
Public
Building Discrete-Event Simulation Models in Free and Open Source Software: An Introductory Tutorial (paper)
TeX
•0•1•0•0•Updated Oct 7, 2024Oct 7, 2024
stars-simpy-example-docs
Public
STARS Project: Example `simpy` model documentation using JupyterBook, GitHub Pages, and STRESS
documentation reproducible-research reporting open-science simpy discrete-event-simulation model-reuse jupyterbook
Jupyter Notebook
•
MIT License
•2•1•2•0•Updated Oct 7, 2024Oct 7, 2024
stars-treat-sim
Public
Implementation of python package for Nelson's (2013) treatment centre model
Python
•
MIT License
•0•0•4•0•Updated Oct 3, 2024Oct 3, 2024
stars-simpy-jupterlite
Public template
A template for Discrete-Event Simulation (DES) repositories that use JupyerLite and xeus-python to enable reproducible environments and models
Jupyter Notebook
•
MIT License
•0•3•0•0•Updated Oct 2, 2024Oct 2, 2024
jackson-network-jupyterlite
Public
Jupyter Notebook
•0•0•0•0•Updated Sep 30, 2024Sep 30, 2024
stars_reproduction_template
Public template
Template repository for assessing the computational reproducibility of simulation studies on STARS
template simulation reproducibility
TeX
•
MIT License
•0•1•0•0•Updated Aug 20, 2024Aug 20, 2024
stars-logo
Public
STARS branding
Creative Commons Attribution 4.0 International
•0•2•1•0•Updated Aug 19, 2024Aug 19, 2024
stars-treat-simmer
Public
R Simmer implemention of the treatment simulation model
open-source reproducible-research health open-science r-language computer-simulation discrete-event-simulation simmer open-modelling
R
•
Other
•0•2•0•0•Updated Jul 22, 2024Jul 22, 2024
pythonhealthdatascience.r-universe.dev
Public
R universe management for STARS
MIT License
•0•0•0•0•Updated Jul 20, 2024Jul 20, 2024
stars_reproduction_protocol
Public
Syncs with Overleaf Latex protocol on simulation reproduction
protocol reproducibility preregistration
TeX
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Jun 20, 2024Jun 20, 2024
stars-reproduce-allen-2020
Public
Test-run of our reproducibility protocol on Allen et al. 2020: "A simulation modelling toolkit for organising outpatient dialysis services during the COVID-19 pandemic"
reproducible-research python3 open-science healthcare reproduction discrete-event-simulation chronic-kidney-disease quarto simpy-library dialysis
Jupyter Notebook
•
MIT License
•0•2•0•0•Updated Jun 19, 2024Jun 19, 2024