Open Problems in Single-Cell Analysis

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30 packages

control_methods/no_denoising
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

125
control_methods/shuffle_integration_by_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

123
control_methods/shuffle_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

119
methods/liger
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

118
project/sync_resources
Published Aug 27, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

117
control_methods/embed_cell_types_jittered
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

114
control_methods/no_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

110
methods/combat
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

109
methods/scanvi
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

108
methods/scvi
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

107
methods/bbknn
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

106
datasets/normalization/log_cp
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

104
control_methods/no_integration_batch
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

104
control_methods/embed_cell_types
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

104
methods/guanlab_dengkw_pm
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

104
control_methods/positive_control
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

102
methods/batchelor_fastmnn
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

102
methods/xgboost
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

101
project/create_component
Published Aug 27, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

99
methods/scanvi_scarches
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

99
methods/scanvi
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

99
methods/scalex
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

94
methods/harmonypy
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

93
methods/knnr_py
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

92
methods/harmony
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

89
methods/knnr_r
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

88
data_processors/process_dataset
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

85
control_methods/random_predict
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

82
methods/lm
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

81
methods/singler
Published Sep 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

79