Repositories list

• docker-elk

  Public template
  The Elastic stack (ELK) powered by Docker and Compose.

  Shell

  •

  MIT License

  •0•0•2•1•Updated Nov 26, 2024Nov 26, 2024

• participation-dashboard

  Public
  A flexdashboard that reports participation metrics for the NLP Sandbox

  R

  •

  Apache License 2.0

  •0•0•3•2•Updated Sep 3, 2024Sep 3, 2024

• notebooks

  Public template
  RStudio and JupyterLab notebook environment to interact with the NLP Sandbox ecosystem.

  Jupyter Notebook

  •

  Apache License 2.0

  •2•1•12•2•Updated Jan 19, 2024Jan 19, 2024

• covid-symptom-annotator-example

  Public template
  Example implementation of the NLP Sandbox COVID Symptom Annotator API

  Python

  •

  Apache License 2.0

  •1•0•0•7•Updated Apr 22, 2023Apr 22, 2023

• contact-annotator-example

  Public template
  Example implementation of the NLP Sandbox Contact Annotator API

  Python

  •

  Apache License 2.0

  •0•0•1•6•Updated Apr 22, 2023Apr 22, 2023

• id-annotator-example

  Public template
  Example implementation of the NLP Sandbox ID Annotator API

  Python

  •

  Apache License 2.0

  •0•0•1•6•Updated Apr 22, 2023Apr 22, 2023

• date-annotator-example-java

  Public template
  Example implementation of the NLP Sandbox Date Annotator API for Java

  Java

  •

  Apache License 2.0

  •1•0•0•6•Updated Apr 22, 2023Apr 22, 2023

• person-name-annotator-example

  Public template
  Example implementation of the NLP Sandbox Person Name Annotator API

  nlpapidocker+ 5natural-language-processingannotationapi-servercd2hnlp-sandbox

  Python

  •

  Apache License 2.0

  •1•1•0•6•Updated Apr 21, 2023Apr 21, 2023

• location-annotator-example

  Public template
  Example implementation of the NLP Sandbox Location Annotator API

  nlpdockerbenchmarking+ 10natural-language-processingannotationdocker-composesandboxopenapisage-bionetworksdocker-image+ 3

  Python

  •

  Apache License 2.0

  •1•1•0•6•Updated Apr 21, 2023Apr 21, 2023

• date-annotator-example

  Public template
  Example implementation of the NLP Sandbox Date Annotator API

  nlpbenchmarkingnatural-language-processing+ 6datetimedateapi-servicecd2hsage-bionetworksnlp-sandbox

  Python

  •

  Apache License 2.0

  •4•6•5•8•Updated Apr 21, 2023Apr 21, 2023

• phi-deidentifier-app

  Public
  React client for the NLP Sandbox PHI Deidentifier API

  TypeScript

  •

  Apache License 2.0

  •1•1•11•15•Updated Mar 6, 2023Mar 6, 2023

• phi-deidentifier-example

  Public template
  Example implementation of the NLP Sandbox PHI Deidentifier API

  nlpdockernatural-language-processing+ 5deidentificationdeidentifydeidsage-bionetworksnlp-sandbox

  Python

  •

  Apache License 2.0

  •3•2•10•17•Updated Mar 1, 2023Mar 1, 2023

• date-annotator-stub

  Public
  Python-Flask stub for the NLP Sandbox Date Annotator API

  Python

  •

  Apache License 2.0

  •0•0•1•5•Updated Feb 15, 2023Feb 15, 2023

• nlpsandbox-infra

  Public
  AWS CloudFormation templates for deploying the NLP Sandbox infrastructure

  Apache License 2.0

  •1•0•7•1•Updated Dec 8, 2022Dec 8, 2022

• phi-annotator-example-java

  Public template
  Example implementation of the NLP Sandbox PHI Annotator API for Java

  Java

  •

  Apache License 2.0

  •0•0•0•4•Updated Dec 6, 2022Dec 6, 2022

• nlpsandbox.io

  Public template
  NLPSandbox.io website hosted on Synapse

  nlpproductionsynapse+ 5github-workflowsage-bionetworkswikistagingnlpsandbox

  Apache License 2.0

  •5•3•11•7•Updated Dec 6, 2022Dec 6, 2022

• nlpsandbox-client

  Public
  Python client to interact with the NLP Sandbox

  pythonnlpdocker+ 5clientnatural-language-processingclient-librarycd2hnlp-sandbox

  Python

  •

  Apache License 2.0

  •3•3•6•7•Updated Dec 5, 2022Dec 5, 2022

• nlpsandbox-schemas

  Public
  OpenAPI specifications of the NLP Sandbox services

  Apache License 2.0

  •4•2•15•6•Updated Nov 16, 2022Nov 16, 2022

• phi-annotator-huggingface

  Public template
  BERT NLP Sandbox PHI annotator

  Python

  •

  Apache License 2.0

  •1•1•3•4•Updated Nov 11, 2022Nov 11, 2022

• phi-annotator-neuroner

  Public template
  NeuroNER NLP Sandbox PHI annotator

  Python

  •

  Apache License 2.0

  •2•0•2•5•Updated Nov 11, 2022Nov 11, 2022

• phi-annotator-example

  Public template
  Example implementation of the NLP Sandbox PHI Annotator API

  nlpdockerbenchmarking+ 4docker-composeopenapipython-flasknlp-sandbox

  Python

  •

  Apache License 2.0

  •1•0•4•4•Updated Nov 11, 2022Nov 11, 2022

• data-node

  Public
  Repository of FHIR and annotation resources used to benchmark NLP Sandbox tools

  nlpbenchmarkingdata+ 9annotationrest-apidbfhirclinical-notespatientsclinical-data+ 2

  Python

  •

  Apache License 2.0

  •2•4•12•2•Updated Oct 8, 2022Oct 8, 2022

• nlpsandbox-controller

  Public
  NLP Sandbox CWL workflow and tools

  nlp-sandboxnlp-developersubmission-workflow+ 2orchestrator-workflowsynapse-submission

  Common Workflow Language

  •

  Apache License 2.0

  •2•3•11•1•Updated May 4, 2022May 4, 2022

• phi-annotator-spark-nlp

  Public template
  An implementation of NLP Sandbox PHI Annotator API based on Spark NLP

  pythonbenchmarkingspark+ 8rest-apiopenapispark-nlpnlp-sandboxsage-bionetworksnlpsandboxnlp+ 1

  Python

  •

  Apache License 2.0

  •1•0•2•0•Updated Jan 4, 2022Jan 4, 2022

• i2b2-phi-dataset

  Public archive
  Generation of the i2b2 PHI dataset for the NLP Sandbox

  Dockerfile

  •

  MIT License

  •0•1•0•0•Updated Oct 21, 2021Oct 21, 2021

• test-html-dashboards

  Public
  0•0•0•0•Updated Sep 24, 2021Sep 24, 2021

• support

  Public
  Where NLP Sandbox users can request submission logs, share ideas and report issues.

  Apache License 2.0

  •0•0•0•0•Updated Jul 20, 2021Jul 20, 2021

• nlpsandbox-themes

  Public
  Logo, banner and templates for NLPSandbox.io

  0•0•0•0•Updated Jun 3, 2021Jun 3, 2021

• discord

  Public
  How to configure and use the NLP Sandbox Discord server

  Apache License 2.0

  •0•0•0•0•Updated Feb 28, 2021Feb 28, 2021

• nlpsandbox

  Public
  Home repository

  Apache License 2.0

  •0•0•31•0•Updated Feb 28, 2021Feb 28, 2021