OpenMendel

All

37 repositories

MendelImpute.jl
Public
OpenMendel package for haplotyping and imputation
Julia
•
Other
•1•24•2•3•Updated Dec 13, 2024Dec 13, 2024
TrajGWAS.jl
Public
Julia
•
MIT License
•1•13•9•2•Updated Dec 13, 2024Dec 13, 2024
QuasiCopula.jl
Public
A Flexible Quasi-Copula Distribution for Statistical Modeling
Julia
•
MIT License
•1•1•1•8•Updated Dec 13, 2024Dec 13, 2024
HaploADMIXTURE.jl
Public
Julia
•
MIT License
•0•2•0•1•Updated Dec 13, 2024Dec 13, 2024
OrdinalMultinomialModels.jl
Public
ordered multinomial models
proportional-hazard-test proportional-odds-regression
Julia
•
MIT License
•2•11•2•0•Updated Dec 13, 2024Dec 13, 2024
OpenADMIXTURE.jl
Public
Julia
•
MIT License
•1•7•2•1•Updated Dec 13, 2024Dec 13, 2024
PGENFiles.jl
Public
Julia
•
MIT License
•1•3•0•1•Updated Dec 13, 2024Dec 13, 2024
OrdinalGWAS.jl
Public
Genome-wide association studies (GWAS) for ordered categorical phenotypes
gwas proportional-odds-regression ordered-multinomial-models
Julia
•
MIT License
•7•21•5•1•Updated Dec 13, 2024Dec 13, 2024
BGEN.jl
Public
Julia
•
MIT License
•0•10•3•3•Updated Dec 13, 2024Dec 13, 2024
SnpArrays.jl
Public
Compressed storage for SNP data
plink openmendel snps julia
Julia
•
Other
•9•44•23•5•Updated Dec 13, 2024Dec 13, 2024
VCFTools.jl
Public
Julia utilities for handling VCF files
vcf julia
Julia
•
Other
•4•18•5•2•Updated Apr 2, 2024Apr 2, 2024
GeneticVariantBase.jl
Public
Julia
•
MIT License
•1•2•0•0•Updated Jan 5, 2024Jan 5, 2024
MendelIHT.jl
Public
Iterative hard thresholding for l0 penalized regression
gwas sparsity regression model-selection multivariate glm genetic-algorithms multivariate-regression sparse-linear-solver julia
Julia
•
Other
•4•22•5•0•Updated Sep 15, 2023Sep 15, 2023
WiSER.jl
Public
Within-subject variance estimation by robust regression (WiSER)
Julia
•
MIT License
•1•8•1•1•Updated Aug 20, 2023Aug 20, 2023
TraitSimulation.jl
Public
Simulate phenotypes from any GLM model
Julia
•
Other
•1•3•1•7•Updated Jun 5, 2023Jun 5, 2023
VarianceComponentModels.jl
Public
Utilities for fitting and testing variance component models
variance-component gcta genetic-heritability julia openmendel
Julia
•
Other
•5•8•4•3•Updated Sep 9, 2022Sep 9, 2022
MendelPlots.jl
Public
Julia package for plotting results from GWAS
manhattan-plot qqplot gwas julia
Julia
•
MIT License
•2•10•2•0•Updated Sep 8, 2022Sep 8, 2022
ADMIXTURE.jl
Public
Julia wrapper of the ADMIXTURE program for estimating ancestry
admixture openmendel
Julia
•
MIT License
•0•6•1•0•Updated Sep 8, 2022Sep 8, 2022
OpenMendel.github.io
Public
The main website for the OpenMendel project.
2•12•2•0•Updated Jul 24, 2022Jul 24, 2022
MendelBase.jl
Public
MendelBase contains the base functions of OpenMendel.
Julia
•
MIT License
•3•5•0•2•Updated Jul 24, 2022Jul 24, 2022
MendelGeneticCounseling.jl
Public
This analysis option performs risk calculations for genetic counseling problems.
Julia
•
MIT License
•2•2•0•2•Updated Jul 24, 2022Jul 24, 2022
Tutorials
Public
Basic OpenMendel tutorials
tutorial openmendel
HTML
•
Other
•6•11•1•2•Updated Jul 24, 2022Jul 24, 2022
MendelSearch.jl
Public
MendelSearch is a program for function optimization. Search permits bounds and linear constraints to be imposed on parameters and, in statistical applications, computes asymptotic standard errors and correlations of parameter estimates.
Julia
•
MIT License
•1•2•0•2•Updated Jul 24, 2022Jul 24, 2022
MendelTwoPointLinkage.jl
Public
This analysis option performs two-point linkage analysis.
Julia
•
MIT License
•1•2•1•0•Updated Jul 24, 2022Jul 24, 2022
MendelLocationScores.jl
Public
This analysis option maps a trait via the method of Location Scores, i.e., multipoint linkage analysis.
Julia
•
MIT License
•1•2•0•0•Updated Jul 24, 2022Jul 24, 2022
MendelKinship.jl
Public
This analysis option computes kinship and other identity coefficients.
Julia
•
MIT License
•1•1•3•0•Updated Jul 24, 2022Jul 24, 2022
ClassicMendel
Public
Official Mendel package distribution
Other
•0•2•1•0•Updated Jul 24, 2022Jul 24, 2022
MendelGWAS.jl
Public
This package performs standard Genome-wide Association Studies.
Julia
•
MIT License
•2•5•7•1•Updated Jul 24, 2022Jul 24, 2022
ASHG-OpenMendelWorkshop-2020-Oct
Public
OpenMendel tutorials for ASHG Workshop
HTML
•
MIT License
•0•7•1•0•Updated Oct 26, 2020Oct 26, 2020
LangeSymposium-ProgrammingWorkshop-20202022
Public
OpenMendel tutorials for Lange's Symposium Programming Workshop
ucla lange-symposium openmendel-tutorials
HTML
•
MIT License
•1•5•1•0•Updated Feb 22, 2020Feb 22, 2020