Genomic Data Commons

All

84 repositories

gdc-frontend-framework
Public
TypeScript
•
Apache License 2.0
•0•10•0•11•Updated Jan 17, 2025Jan 17, 2025
gdc-sanger-somatic-tool
Public
Support scripts for the sanger somatic workflows
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•2•Updated Jan 16, 2025Jan 16, 2025
gdc-docs
Public
Official repository for GDC User Guides in Markdown format
JavaScript
•
Apache License 2.0
•45•60•0•15•Updated Jan 14, 2025Jan 14, 2025
gdc-models
Public
Git repository centrally stores and serves GDC data models defined in static YAML files
library core
Python
•1•3•4•1•Updated Dec 24, 2024Dec 24, 2024
indexd
Public
Index service server
backend core
Python
•
Apache License 2.0
•20•3•0•10•Updated Dec 24, 2024Dec 24, 2024
variant-filtration-cwl
Public
Workflows for filtering GDC VCFs
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•2•1•0•0•Updated Dec 20, 2024Dec 20, 2024
psqlgraph
Public
Library for graph-like storage in postgresql using sqlalchemy
library core
Python
•
Apache License 2.0
•6•22•5•4•Updated Dec 19, 2024Dec 19, 2024
gdc-ng-models
Public
library core
Python
•
Apache License 2.0
•1•2•0•2•Updated Dec 17, 2024Dec 17, 2024
survivalplot
Public
JavaScript
•4•0•0•8•Updated Dec 12, 2024Dec 12, 2024
boxplot
Public
JavaScript
•1•0•0•9•Updated Dec 12, 2024Dec 12, 2024
bio-colors
Public
JavaScript
•
Apache License 2.0
•1•0•0•2•Updated Dec 12, 2024Dec 12, 2024
qqplot
Public
JavaScript
•1•0•0•10•Updated Dec 12, 2024Dec 12, 2024
webdev_wfui-react
Public
UI library used by the main GDC site
JavaScript
•1•0•0•5•Updated Dec 12, 2024Dec 12, 2024
variant-filtration-tool
Public
Support tools for the GDC Variant Filtration Workflow
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•2•1•0•3•Updated Sep 30, 2024Sep 30, 2024
gdcdictionary
Public
Data dictionary for the GDC
library core
Python
•
Apache License 2.0
•37•50•4•8•Updated Sep 17, 2024Sep 17, 2024
aliquot-maf-tools
Public
Tools for creating and filtering aliquot-level MAFs
docker bioinformatics maf-files workflow-tool
Python
•
Apache License 2.0
•2•4•0•0•Updated Sep 16, 2024Sep 16, 2024
indexclient
Public
Prototype index service client.
library core
Python
•
Apache License 2.0
•2•0•0•1•Updated Sep 12, 2024Sep 12, 2024
gdc-client
Public
GDC Data Transfer Tool
Python
•
Apache License 2.0
•40•148•19•29•Updated Sep 11, 2024Sep 11, 2024
cdisutils
Public
Utility modules for GDC functionality
library core
Python
•2•1•0•14•Updated Aug 12, 2024Aug 12, 2024
gatk4_mutect2_cwl
Public
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•0•0•0•0•Updated Aug 7, 2024Aug 7, 2024
samtools-mpileup-tool
Public
GDC samtools mpileup tool docker
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•1•Updated Aug 6, 2024Aug 6, 2024
samtools-mpileup-cwl
Public
CWL for GDC samtools mpileup
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•1•0•0•0•Updated Aug 5, 2024Aug 5, 2024
gdc-dnaseq-cwl
Public
CWL for GDC DNASeq workflows
bioinformatics workflow cwl
Common Workflow Language
•
Apache License 2.0
•14•22•0•2•Updated Jul 18, 2024Jul 18, 2024
portal-ui
Public archive
GDC Data Portal UI
d3 frontend jest core recompose react redux flow relay
JavaScript
•
Apache License 2.0
•10•18•0•0•Updated Jul 9, 2024Jul 9, 2024
gatk4-mutect2-tool
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Jun 6, 2024Jun 6, 2024
vep-cwl
Public
GDC VEP Variant Annotation Workflow
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•3•0•0•2•Updated Apr 16, 2024Apr 16, 2024
gdc_tosvc_workflow
Public
GDC Tumor-only Somatic Variant Calling Workflow
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•0•0•0•0•Updated Apr 8, 2024Apr 8, 2024
gdc-tosvc-tools
Public
Tools for GDC Tumor-only Somatic Variant Calling Workflow
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•0•Updated Mar 30, 2024Mar 30, 2024
gdcdatamodel
Public
Translation layer between the GDC Data Dictionary and psqlgraph
library core
Python
•
Apache License 2.0
•3•28•5•9•Updated Mar 22, 2024Mar 22, 2024
django
Public
The Web framework for perfectionists with deadlines.
Python
•
BSD 3-Clause "New" or "Revised" License
•32k•0•0•1•Updated Mar 12, 2024Mar 12, 2024