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The link scared the bah jeesus out of me, which started me in a different direction. It's not quite up to dealing with rhel/centos 5 but it is still a step in the right direction.
Have you started using check_package_updates instead of check_yum? The selinux thing is an issue but if we could move away from it the issue would go away for my parts :)
This policy needs minor adjustments if I remember correctly:
http://codeforthesoul.blogspot.com/2012/02/selinux-policy-to-run-checkyum-with.html
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